AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004897

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004897.t1 MTR_8g077990 80.352 738 57 8 1 695 1 693 0.0 1005
MS.gene004897.t1 MTR_1g076600 96.040 101 4 0 595 695 55 155 2.68e-67 218
MS.gene004897.t1 MTR_7g029435 94.565 92 5 0 604 695 1 92 7.65e-58 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004897.t1 AT5G41020 55.124 283 126 1 410 692 302 583 1.33e-112 352

Find 134 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGGAGGGGAGGTGTAAT+TGG 0.255934 1.4:+62910438 MS.gene004897:CDS
TCAATAAATTCCAGCTCTTC+AGG 0.282279 1.4:-62910464 None:intergenic
AACAAATGATCCACCATATT+GGG 0.286872 1.4:+62910948 MS.gene004897:CDS
GAAGATCAAAGCAGCTGTTT+TGG 0.293853 1.4:+62910259 MS.gene004897:CDS
ACATTGCTTTCGGACATATA+TGG 0.300898 1.4:-62909060 None:intergenic
CATTGAGCAGGTGGAAGTTC+TGG 0.301208 1.4:+62910991 MS.gene004897:CDS
GTCACTATACTCCTTAAGTT+TGG 0.317240 1.4:-62909847 None:intergenic
TTGATCTTCTCATCTTCTTC+GGG 0.322099 1.4:-62910245 None:intergenic
TTTGATCTTCTCATCTTCTT+CGG 0.324153 1.4:-62910246 None:intergenic
GAACAAATGATCCACCATAT+TGG 0.329038 1.4:+62910947 MS.gene004897:CDS
GATAAACGCTTTATATGCTT+TGG 0.342448 1.4:+62910847 MS.gene004897:CDS
TATATAGATTCTCATGGTTT+GGG 0.357329 1.4:+62910284 MS.gene004897:CDS
GTATATAGATTCTCATGGTT+TGG 0.365976 1.4:+62910283 MS.gene004897:CDS
TTATGTGTGCCTTCTTCACT+TGG 0.367399 1.4:-62909540 None:intergenic
TCATCATCTTCACATTCATT+TGG 0.373205 1.4:-62909774 None:intergenic
GGAGGCAATTGGTCACAAAT+TGG 0.375244 1.4:+62910724 MS.gene004897:CDS
TCTCTATCTTTCAACAGGTT+AGG 0.380269 1.4:-62911028 None:intergenic
ACTCCTAACTCTGCACATAA+TGG 0.384709 1.4:+62910134 MS.gene004897:CDS
GTTCCATTATGTGCAGAGTT+AGG 0.391649 1.4:-62910137 None:intergenic
GAGGGCAGTAGCCGACGCTT+TGG 0.393084 1.4:+62910517 MS.gene004897:CDS
TGGCTGCATGCTCCCCAATA+TGG 0.395764 1.4:-62910961 None:intergenic
CAGATCAGCTACATTGCTTT+CGG 0.400572 1.4:-62909070 None:intergenic
CTCTATCTTTCAACAGGTTA+GGG 0.404823 1.4:-62911027 None:intergenic
CATTGGTTGCTAGTGGTGAT+TGG 0.407410 1.4:+62910801 MS.gene004897:CDS
GGGAGACGAAGGTCTTGATA+TGG 0.410993 1.4:+62910304 MS.gene004897:CDS
AGGCCTCTCTATCTTTCAAC+AGG 0.417278 1.4:-62911033 None:intergenic
AGAAGCAATGAAGGTGATAA+TGG 0.417384 1.4:+62909297 MS.gene004897:CDS
TTCCAACAGCCTCTAACCTC+GGG 0.421209 1.4:-62910347 None:intergenic
GTTTCATTATGTGCACAGTT+AGG 0.421260 1.4:-62910113 None:intergenic
TAGCCCTCTCGAGCAGATCT+AGG 0.424550 1.4:-62910649 None:intergenic
GTTGCGAGATAATATTTGTT+GGG 0.434220 1.4:+62910703 MS.gene004897:CDS
AAATTACACCCCGAGGTTAG+AGG 0.442409 1.4:+62910338 MS.gene004897:CDS
ACGCTGTAATGAGGCCTCTC+AGG 0.445935 1.4:-62910389 None:intergenic
GTTTCATTACGTGCACAGTT+AGG 0.446203 1.4:-62909981 None:intergenic
AGGGCAGTAGCCGACGCTTT+GGG 0.446431 1.4:+62910518 MS.gene004897:CDS
GCTGCATGGAGGAGGTAGAC+TGG 0.446516 1.4:+62910876 MS.gene004897:CDS
CTAAACGCAAACAAGTAACT+TGG 0.447239 1.4:+62910162 MS.gene004897:CDS
TGCTCATGCTTTGTTAGAAA+GGG 0.448940 1.4:+62910421 MS.gene004897:CDS
GTGCTCATGCTTTGTTAGAA+AGG 0.460254 1.4:+62910420 MS.gene004897:CDS
AATATTTGTTGGGAGGCAAT+TGG 0.463198 1.4:+62910713 MS.gene004897:CDS
TTTCCAACAGCCTCTAACCT+CGG 0.465967 1.4:-62910348 None:intergenic
GTCACTGAAGTTAATGATGA+AGG 0.477306 1.4:+62909909 MS.gene004897:CDS
TGCTTTGGATGCTTGCTGCA+TGG 0.479442 1.4:+62910862 MS.gene004897:CDS
TAGAAGCAATGGAGGTGAAG+AGG 0.484300 1.4:+62909671 MS.gene004897:CDS
ACGGCTTATTGCGTGGGAAA+AGG 0.484774 1.4:+62910216 MS.gene004897:CDS
AAGAAGCAGAAATTAATTGA+AGG 0.487991 1.4:+62909621 MS.gene004897:CDS
TGTTGCGAGATAATATTTGT+TGG 0.489321 1.4:+62910702 MS.gene004897:CDS
GTCAGTGAAGTTAATGATCA+AGG 0.490585 1.4:+62910041 MS.gene004897:CDS
GGATGCTTGCTGCATGGAGG+AGG 0.492182 1.4:+62910868 MS.gene004897:CDS
AAGAAGAAACCAAGTGAAGA+AGG 0.493411 1.4:+62909531 MS.gene004897:CDS
AAGTGAAGAAAGTAAACATA+AGG 0.498172 1.4:+62909734 MS.gene004897:CDS
TGAAGGTGATAATGGCGAGC+AGG 0.499793 1.4:+62909305 MS.gene004897:CDS
TAATTGGACACCTGAAGAGC+TGG 0.502587 1.4:+62910454 MS.gene004897:CDS
GAGTGAGAAAAGCAAACATA+AGG 0.503511 1.4:+62909356 MS.gene004897:CDS
TCAGCATCACCTTCATTGCC+AGG 0.508437 1.4:-62910005 None:intergenic
ATAGGTCTGGTGATGTATGC+AGG 0.510035 1.4:+62910915 MS.gene004897:CDS
TGTAATGACTTTAGAAGCAA+TGG 0.511180 1.4:+62909660 MS.gene004897:CDS
AACAACTTTAGAAGCAATGA+AGG 0.512264 1.4:+62909288 MS.gene004897:CDS
AATTGAGGAAGCCAAACTTA+AGG 0.514474 1.4:+62909836 MS.gene004897:CDS
AGTGACATTATAAGCAATGA+AGG 0.517478 1.4:+62909864 MS.gene004897:CDS
TTTGGGTAAAAGTCGAGATC+AGG 0.519802 1.4:+62910535 MS.gene004897:CDS
GAAGAAGAAGAAACTAATTG+AGG 0.520193 1.4:+62909821 MS.gene004897:CDS
AGCCAAGTCATTCATTGAGC+AGG 0.521908 1.4:+62910979 MS.gene004897:CDS
AATCTACTTGAGCATAGGTC+TGG 0.523977 1.4:+62910902 MS.gene004897:CDS
CTGCATGGAGGAGGTAGACT+GGG 0.526890 1.4:+62910877 MS.gene004897:CDS
AAAAGCAATAAAAGTGAAGA+TGG 0.528970 1.4:+62909102 MS.gene004897:CDS
CGAGCAATTAACATCAGCAT+TGG 0.533412 1.4:+62910784 MS.gene004897:CDS
AAGAAGCGGAAGCTAGTTGA+AGG 0.534153 1.4:+62909246 MS.gene004897:CDS
TTGGAGTATATAGATTCTCA+TGG 0.535104 1.4:+62910278 MS.gene004897:CDS
AAGTGAAGAAGGCACACATA+AGG 0.535379 1.4:+62909542 MS.gene004897:CDS
ACCCCGAGGTTAGAGGCTGT+TGG 0.535419 1.4:+62910345 MS.gene004897:CDS
AAAAGTGAAGATGGCGAGCA+AGG 0.538269 1.4:+62909111 MS.gene004897:CDS
CATATATGGATCACCTCCAT+TGG 0.545409 1.4:-62909046 None:intergenic
CGGTTATACACGCTGTAATG+AGG 0.545833 1.4:-62910398 None:intergenic
CATATAAAGCGTTTATCAAG+CGG 0.546556 1.4:-62910841 None:intergenic
AATCACAGGTTTGTTGTCAA+AGG 0.550299 1.4:-62911053 None:intergenic
ACGAGCAACATGGATCTAGT+TGG 0.551620 1.4:+62910495 MS.gene004897:CDS
AACTTGGGCTGATGAGGTGG+AGG 0.553676 1.4:+62910178 MS.gene004897:CDS
GTTTATCAAGCGGAAGTCAT+CGG 0.557461 1.4:-62910831 None:intergenic
ACAAGTAACTTGGGCTGATG+AGG 0.559174 1.4:+62910172 MS.gene004897:CDS
TGTTGTGACGGCTTATTGCG+TGG 0.561335 1.4:+62910209 MS.gene004897:CDS
AGAAGCAATGGAGGTGAAGA+GGG 0.566382 1.4:+62909672 MS.gene004897:CDS
AATGAAACTCCTGGCAATGA+AGG 0.566619 1.4:+62909996 MS.gene004897:CDS
TGTGCACGTAATGAAACTCC+TGG 0.570515 1.4:+62909987 MS.gene004897:CDS
CATGCTTTGTTAGAAAGGGA+GGG 0.573971 1.4:+62910425 MS.gene004897:CDS
AGTAACTTGGGCTGATGAGG+TGG 0.573985 1.4:+62910175 MS.gene004897:CDS
TCATGCTTTGTTAGAAAGGG+AGG 0.576855 1.4:+62910424 MS.gene004897:CDS
TAGAAACCTCAACAAATCAC+AGG 0.579568 1.4:-62911067 None:intergenic
GAAGGTGATAATGGCGAGCA+GGG 0.580967 1.4:+62909306 MS.gene004897:CDS
ATGCTTTGTTAGAAAGGGAG+GGG 0.581640 1.4:+62910426 MS.gene004897:CDS
CACCTGCTCAATGAATGACT+TGG 0.584077 1.4:-62910981 None:intergenic
AACAAACCTGTGATTTGTTG+AGG 0.586181 1.4:+62911061 MS.gene004897:CDS
AGCAACATGGATCTAGTTGG+AGG 0.586815 1.4:+62910498 MS.gene004897:CDS
GCGAGATAATATTTGTTGGG+AGG 0.587211 1.4:+62910706 MS.gene004897:CDS
GAGGAGAAGTTATGTTGTGA+CGG 0.589001 1.4:+62910197 MS.gene004897:CDS
ACATCAGCATTGGTTGCTAG+TGG 0.590714 1.4:+62910794 MS.gene004897:CDS
AGAAGCAATGATGATGAAGA+TGG 0.598793 1.4:+62909483 MS.gene004897:CDS
GACGACGAGGGTGAAACCAA+TGG 0.599409 1.4:+62909030 MS.gene004897:CDS
CTGCATGCTCCCCAATATGG+TGG 0.600862 1.4:-62910958 None:intergenic
TAAACGCAAACAAGTAACTT+GGG 0.603412 1.4:+62910163 MS.gene004897:CDS
TGAAGGAAACACACTTGAGG+AGG 0.607482 1.4:+62909263 MS.gene004897:CDS
AAACCTAGATCTGCTCGAGA+GGG 0.608007 1.4:+62910646 MS.gene004897:CDS
TAAACCTAGATCTGCTCGAG+AGG 0.609475 1.4:+62910645 MS.gene004897:CDS
TTGATCATTAACTTCACTGA+CGG 0.613157 1.4:-62910039 None:intergenic
AATTGAAGGAAGCACACTGA+AGG 0.616212 1.4:+62909446 MS.gene004897:CDS
GGGACAATCTACTTGAGCAT+AGG 0.618965 1.4:+62910897 MS.gene004897:CDS
TAACCTGTTGAAAGATAGAG+AGG 0.620502 1.4:+62911030 MS.gene004897:CDS
ACAAATGATCCACCATATTG+GGG 0.622830 1.4:+62910949 MS.gene004897:CDS
TCTCATGGTTTGGGAGACGA+AGG 0.623440 1.4:+62910293 MS.gene004897:CDS
CAAGTCATTCATTGAGCAGG+TGG 0.627450 1.4:+62910982 MS.gene004897:CDS
GAAAAGACCTACGAGCAACA+TGG 0.630731 1.4:+62910485 MS.gene004897:CDS
TTTCTAACAAAGCATGAGCA+CGG 0.633278 1.4:-62910418 None:intergenic
GTGATGTATGCAGGAAACGA+TGG 0.636494 1.4:+62910924 MS.gene004897:CDS
GAGATCAGGTAAAAGATGCA+TGG 0.640257 1.4:+62910549 MS.gene004897:CDS
GTTGTGACGGCTTATTGCGT+GGG 0.642851 1.4:+62910210 MS.gene004897:CDS
GCAACATGGATCTAGTTGGA+GGG 0.643237 1.4:+62910499 MS.gene004897:CDS
TTTGGATGCTTGCTGCATGG+AGG 0.643384 1.4:+62910865 MS.gene004897:CDS
AATGAATGTGAAGATGATGA+TGG 0.645642 1.4:+62909777 MS.gene004897:CDS
ACTAGATCCATGTTGCTCGT+AGG 0.645688 1.4:-62910492 None:intergenic
TGATGTATGCAGGAAACGAT+GGG 0.648956 1.4:+62910925 MS.gene004897:CDS
AATGACTTTAGAAGCAATGG+AGG 0.658645 1.4:+62909663 MS.gene004897:CDS
CTTTGTTAGAAAGGGAGGGG+AGG 0.659450 1.4:+62910429 MS.gene004897:CDS
GAAGGAAACACACTTGAGGA+GGG 0.660891 1.4:+62909264 MS.gene004897:CDS
AAAAGGACATTGGTCCCAAG+AGG 0.666914 1.4:+62910598 MS.gene004897:CDS
AAATGTCAAATTACACCCCG+AGG 0.668903 1.4:+62910331 MS.gene004897:CDS
CAAAAGAACTGAAGACGACG+AGG 0.676138 1.4:+62909017 MS.gene004897:CDS
TGTGAAGATGATGATGGCCA+AGG 0.683186 1.4:+62909783 MS.gene004897:CDS
AAATGTGAAGCTAACAACCA+AGG 0.685022 1.4:+62909402 MS.gene004897:CDS
TCCAACAGCCTCTAACCTCG+GGG 0.692890 1.4:-62910346 None:intergenic
AATGATTGTGAAGATGACCA+AGG 0.698674 1.4:+62909585 MS.gene004897:CDS
AGTTGAAGGAAACACACTTG+AGG 0.699110 1.4:+62909260 MS.gene004897:CDS
AAAAGAACTGAAGACGACGA+GGG 0.720222 1.4:+62909018 MS.gene004897:CDS
GAATGTGAAGATGATGACCA+CGG 0.736913 1.4:+62909210 MS.gene004897:CDS
GACGAGGGTGAAACCAATGG+AGG 0.742823 1.4:+62909033 MS.gene004897:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACCAAAACAAAAAA+AGG + chr1.4:62910581-62910600 MS.gene004897:CDS 15.0%
!!! TTGTTTTGGTATATTTTAAT+CGG - chr1.4:62910577-62910596 None:intergenic 15.0%
! AAAAGCAATAAAAGTGAAGA+TGG + chr1.4:62909102-62909121 MS.gene004897:CDS 25.0%
! AAGAAGCAGAAATTAATTGA+AGG + chr1.4:62909621-62909640 MS.gene004897:CDS 25.0%
! AAGTGAAGAAAGTAAACATA+AGG + chr1.4:62909734-62909753 MS.gene004897:CDS 25.0%
! ATGAAAAAGAAGCTAATTGA+AGG + chr1.4:62909432-62909451 MS.gene004897:CDS 25.0%
! CCTTATAAAAAATCACAACA+TGG + chr1.4:62910677-62910696 MS.gene004897:CDS 25.0%
! TATATAGATTCTCATGGTTT+GGG + chr1.4:62910284-62910303 MS.gene004897:CDS 25.0%
!!! ATAAATTTTGATACTCCTCT+TGG - chr1.4:62910616-62910635 None:intergenic 25.0%
!!! ATCTTCACTTTTATTGCTTT+TGG - chr1.4:62909103-62909122 None:intergenic 25.0%
!!! CCATGTTGTGATTTTTTATA+AGG - chr1.4:62910680-62910699 None:intergenic 25.0%
!!! TAAATTTTGATACTCCTCTT+GGG - chr1.4:62910615-62910634 None:intergenic 25.0%
AACAAATGATCCACCATATT+GGG + chr1.4:62910948-62910967 MS.gene004897:CDS 30.0%
AATGAATGTGAAGATGATGA+TGG + chr1.4:62909207-62909226 MS.gene004897:CDS 30.0%
AGTGACATTATAAGCAATGA+AGG + chr1.4:62909864-62909883 MS.gene004897:CDS 30.0%
CCAAAACAAAAAAAGGACAT+TGG + chr1.4:62910588-62910607 MS.gene004897:CDS 30.0%
GAAAGAAGATGAAAAAGAAG+CGG + chr1.4:62909232-62909251 MS.gene004897:CDS 30.0%
GAAGAAGAAGAAACTAATTG+AGG + chr1.4:62909821-62909840 MS.gene004897:CDS 30.0%
GATAAACGCTTTATATGCTT+TGG + chr1.4:62910847-62910866 MS.gene004897:CDS 30.0%
GGGAAAGAAGAAAAAGAAAA+AGG + chr1.4:62909326-62909345 MS.gene004897:CDS 30.0%
GTATATAGATTCTCATGGTT+TGG + chr1.4:62910283-62910302 MS.gene004897:CDS 30.0%
GTTGCGAGATAATATTTGTT+GGG + chr1.4:62910703-62910722 MS.gene004897:CDS 30.0%
TAAACGCAAACAAGTAACTT+GGG + chr1.4:62910163-62910182 MS.gene004897:CDS 30.0%
TCATCATCTTCACATTCATT+TGG - chr1.4:62909207-62909226 None:intergenic 30.0%
TGTTGCGAGATAATATTTGT+TGG + chr1.4:62910702-62910721 MS.gene004897:CDS 30.0%
TTGATCATTAACTTCACTGA+CGG - chr1.4:62910042-62910061 None:intergenic 30.0%
TTGGAGTATATAGATTCTCA+TGG + chr1.4:62910278-62910297 MS.gene004897:CDS 30.0%
TTTGATCTTCTCATCTTCTT+CGG - chr1.4:62910249-62910268 None:intergenic 30.0%
! AACAACTTTAGAAGCAATGA+AGG + chr1.4:62909288-62909307 MS.gene004897:CDS 30.0%
! CATATAAAGCGTTTATCAAG+CGG - chr1.4:62910844-62910863 None:intergenic 30.0%
! TCTTCTTCATTTTCTTTCCT+TGG - chr1.4:62909803-62909822 None:intergenic 30.0%
! TGTAATGACTTTAGAAGCAA+TGG + chr1.4:62909660-62909679 MS.gene004897:CDS 30.0%
!! CTTTTATTGCTTTTGGTCAA+AGG - chr1.4:62909096-62909115 None:intergenic 30.0%
!! TCTTTTTCATCTTCTTTCCT+TGG - chr1.4:62909422-62909441 None:intergenic 30.0%
!! TCTTTTTCGTCTTTTTTCCT+TGG - chr1.4:62909605-62909624 None:intergenic 30.0%
!!! CCAATGTCCTTTTTTTGTTT+TGG - chr1.4:62910591-62910610 None:intergenic 30.0%
!!! GTTCTTTTGTTTTTCTTGCT+CGG - chr1.4:62909006-62909025 None:intergenic 30.0%
AAATGTGAAGCTAACAACCA+AGG + chr1.4:62909402-62909421 MS.gene004897:CDS 35.0%
AAGAAGAAACCAAGTGAAGA+AGG + chr1.4:62909531-62909550 MS.gene004897:CDS 35.0%
AATGATTGTGAAGATGACCA+AGG + chr1.4:62909585-62909604 MS.gene004897:CDS 35.0%
AATTGAGGAAGCCAAACTTA+AGG + chr1.4:62909836-62909855 MS.gene004897:CDS 35.0%
ACAAATGATCCACCATATTG+GGG + chr1.4:62910949-62910968 MS.gene004897:CDS 35.0%
ACATTGCTTTCGGACATATA+TGG - chr1.4:62909063-62909082 None:intergenic 35.0%
AGAAGCAATGAAGGTGATAA+TGG + chr1.4:62909297-62909316 MS.gene004897:CDS 35.0%
CTAAACGCAAACAAGTAACT+TGG + chr1.4:62910162-62910181 MS.gene004897:CDS 35.0%
CTCTATCTTTCAACAGGTTA+GGG - chr1.4:62911030-62911049 None:intergenic 35.0%
GAACAAATGATCCACCATAT+TGG + chr1.4:62910947-62910966 MS.gene004897:CDS 35.0%
GAGTGAGAAAAGCAAACATA+AGG + chr1.4:62909356-62909375 MS.gene004897:CDS 35.0%
GTCACTATACTCCTTAAGTT+TGG - chr1.4:62909850-62909869 None:intergenic 35.0%
GTCACTGAAGTTAATGATGA+AGG + chr1.4:62909909-62909928 MS.gene004897:CDS 35.0%
GTCAGTGAAGTTAATGATCA+AGG + chr1.4:62910041-62910060 MS.gene004897:CDS 35.0%
GTTTCATTATGTGCACAGTT+AGG - chr1.4:62910116-62910135 None:intergenic 35.0%
TAACCTGTTGAAAGATAGAG+AGG + chr1.4:62911030-62911049 MS.gene004897:CDS 35.0%
TCAATAAATTCCAGCTCTTC+AGG - chr1.4:62910467-62910486 None:intergenic 35.0%
TCTCTATCTTTCAACAGGTT+AGG - chr1.4:62911031-62911050 None:intergenic 35.0%
TTGATCTTCTCATCTTCTTC+GGG - chr1.4:62910248-62910267 None:intergenic 35.0%
TTTCTAACAAAGCATGAGCA+CGG - chr1.4:62910421-62910440 None:intergenic 35.0%
! AATATTTGTTGGGAGGCAAT+TGG + chr1.4:62910713-62910732 MS.gene004897:CDS 35.0%
! AATGACTTTAGAAGCAATGG+AGG + chr1.4:62909663-62909682 MS.gene004897:CDS 35.0%
! AGAAGCAATGATGATGAAGA+TGG + chr1.4:62909483-62909502 MS.gene004897:CDS 35.0%
! TGCTCATGCTTTGTTAGAAA+GGG + chr1.4:62910421-62910440 MS.gene004897:CDS 35.0%
!! AATCACAGGTTTGTTGTCAA+AGG - chr1.4:62911056-62911075 None:intergenic 35.0%
!! TCTTTTTCATCTTCTTTCCG+TGG - chr1.4:62909230-62909249 None:intergenic 35.0%
AAAAGAACTGAAGACGACGA+GGG + chr1.4:62909018-62909037 MS.gene004897:CDS 40.0%
AAATGTCAAATTACACCCCG+AGG + chr1.4:62910331-62910350 MS.gene004897:CDS 40.0%
AATCTACTTGAGCATAGGTC+TGG + chr1.4:62910902-62910921 MS.gene004897:CDS 40.0%
AATGAAACTCCTGGCAATGA+AGG + chr1.4:62909996-62910015 MS.gene004897:CDS 40.0%
ACTCCTAACTCTGCACATAA+TGG + chr1.4:62910134-62910153 MS.gene004897:CDS 40.0%
AGTTGAAGGAAACACACTTG+AGG + chr1.4:62909260-62909279 MS.gene004897:CDS 40.0%
CAGATCAGCTACATTGCTTT+CGG - chr1.4:62909073-62909092 None:intergenic 40.0%
CATATATGGATCACCTCCAT+TGG - chr1.4:62909049-62909068 None:intergenic 40.0%
CGAGCAATTAACATCAGCAT+TGG + chr1.4:62910784-62910803 MS.gene004897:CDS 40.0%
GAATGTGAAGATGATGACCA+CGG + chr1.4:62909210-62909229 MS.gene004897:CDS 40.0%
GAGATCAGGTAAAAGATGCA+TGG + chr1.4:62910549-62910568 MS.gene004897:CDS 40.0%
GAGGAGAAGTTATGTTGTGA+CGG + chr1.4:62910197-62910216 MS.gene004897:CDS 40.0%
GTTCCATTATGTGCAGAGTT+AGG - chr1.4:62910140-62910159 None:intergenic 40.0%
GTTTATCAAGCGGAAGTCAT+CGG - chr1.4:62910834-62910853 None:intergenic 40.0%
GTTTCATTACGTGCACAGTT+AGG - chr1.4:62909984-62910003 None:intergenic 40.0%
TGATGTATGCAGGAAACGAT+GGG + chr1.4:62910925-62910944 MS.gene004897:CDS 40.0%
TTATGTGTGCCTTCTTCACT+TGG - chr1.4:62909543-62909562 None:intergenic 40.0%
TTTGGGTAAAAGTCGAGATC+AGG + chr1.4:62910535-62910554 MS.gene004897:CDS 40.0%
! AAGTGAAGAAGGCACACATA+AGG + chr1.4:62909542-62909561 MS.gene004897:CDS 40.0%
! AATTGAAGGAAGCACACTGA+AGG + chr1.4:62909446-62909465 MS.gene004897:CDS 40.0%
! ATGCTTTGTTAGAAAGGGAG+GGG + chr1.4:62910426-62910445 MS.gene004897:CDS 40.0%
! CATGCTTTGTTAGAAAGGGA+GGG + chr1.4:62910425-62910444 MS.gene004897:CDS 40.0%
! GAAGATCAAAGCAGCTGTTT+TGG + chr1.4:62910259-62910278 MS.gene004897:CDS 40.0%
! GCGAGATAATATTTGTTGGG+AGG + chr1.4:62910706-62910725 MS.gene004897:CDS 40.0%
! GTGCTCATGCTTTGTTAGAA+AGG + chr1.4:62910420-62910439 MS.gene004897:CDS 40.0%
! TCATGCTTTGTTAGAAAGGG+AGG + chr1.4:62910424-62910443 MS.gene004897:CDS 40.0%
AAAAGGACATTGGTCCCAAG+AGG + chr1.4:62910598-62910617 MS.gene004897:CDS 45.0%
AAAAGTGAAGATGGCGAGCA+AGG + chr1.4:62909111-62909130 MS.gene004897:CDS 45.0%
AAACCTAGATCTGCTCGAGA+GGG + chr1.4:62910646-62910665 MS.gene004897:CDS 45.0%
AAATTACACCCCGAGGTTAG+AGG + chr1.4:62910338-62910357 MS.gene004897:CDS 45.0%
AAGAAGCGGAAGCTAGTTGA+AGG + chr1.4:62909246-62909265 MS.gene004897:CDS 45.0%
ACAAGTAACTTGGGCTGATG+AGG + chr1.4:62910172-62910191 MS.gene004897:CDS 45.0%
ACGAGCAACATGGATCTAGT+TGG + chr1.4:62910495-62910514 MS.gene004897:CDS 45.0%
ACTAGATCCATGTTGCTCGT+AGG - chr1.4:62910495-62910514 None:intergenic 45.0%
AGAAGCAATGGAGGTGAAGA+GGG + chr1.4:62909672-62909691 MS.gene004897:CDS 45.0%
AGCAACATGGATCTAGTTGG+AGG + chr1.4:62910498-62910517 MS.gene004897:CDS 45.0%
AGCCAAGTCATTCATTGAGC+AGG + chr1.4:62910979-62910998 MS.gene004897:CDS 45.0%
AGGCCTCTCTATCTTTCAAC+AGG - chr1.4:62911036-62911055 None:intergenic 45.0%
CAAAAGAACTGAAGACGACG+AGG + chr1.4:62909017-62909036 MS.gene004897:CDS 45.0%
CAAGTCATTCATTGAGCAGG+TGG + chr1.4:62910982-62911001 MS.gene004897:CDS 45.0%
CACCTGCTCAATGAATGACT+TGG - chr1.4:62910984-62911003 None:intergenic 45.0%
CGGTTATACACGCTGTAATG+AGG - chr1.4:62910401-62910420 None:intergenic 45.0%
GAAAAGACCTACGAGCAACA+TGG + chr1.4:62910485-62910504 MS.gene004897:CDS 45.0%
GAAGGAAACACACTTGAGGA+GGG + chr1.4:62909264-62909283 MS.gene004897:CDS 45.0%
GCAACATGGATCTAGTTGGA+GGG + chr1.4:62910499-62910518 MS.gene004897:CDS 45.0%
GGAGGCAATTGGTCACAAAT+TGG + chr1.4:62910724-62910743 MS.gene004897:CDS 45.0%
GGGACAATCTACTTGAGCAT+AGG + chr1.4:62910897-62910916 MS.gene004897:CDS 45.0%
GTGATGTATGCAGGAAACGA+TGG + chr1.4:62910924-62910943 MS.gene004897:CDS 45.0%
TAAACCTAGATCTGCTCGAG+AGG + chr1.4:62910645-62910664 MS.gene004897:CDS 45.0%
TAATTGGACACCTGAAGAGC+TGG + chr1.4:62910454-62910473 MS.gene004897:CDS 45.0%
TAGAAGCAATGGAGGTGAAG+AGG + chr1.4:62909671-62909690 MS.gene004897:CDS 45.0%
TGAAGGAAACACACTTGAGG+AGG + chr1.4:62909263-62909282 MS.gene004897:CDS 45.0%
TGTGCACGTAATGAAACTCC+TGG + chr1.4:62909987-62910006 MS.gene004897:CDS 45.0%
TTTCCAACAGCCTCTAACCT+CGG - chr1.4:62910351-62910370 None:intergenic 45.0%
! ATAGGTCTGGTGATGTATGC+AGG + chr1.4:62910915-62910934 MS.gene004897:CDS 45.0%
! CATTGGTTGCTAGTGGTGAT+TGG + chr1.4:62910801-62910820 MS.gene004897:CDS 45.0%
! GTGCATTTTGCTGCAAGAAG+TGG + chr1.4:62910759-62910778 MS.gene004897:CDS 45.0%
! TCGACTTTTACCCAAAGCGT+CGG - chr1.4:62910531-62910550 None:intergenic 45.0%
! TCGCAAAAAGCATACCTGAG+AGG + chr1.4:62910375-62910394 MS.gene004897:CDS 45.0%
!! ACATCAGCATTGGTTGCTAG+TGG + chr1.4:62910794-62910813 MS.gene004897:CDS 45.0%
!! TGTGAAGATGATGATGGCCA+AGG + chr1.4:62909783-62909802 MS.gene004897:CDS 45.0%
ACGGCTTATTGCGTGGGAAA+AGG + chr1.4:62910216-62910235 MS.gene004897:CDS 50.0%
AGTAACTTGGGCTGATGAGG+TGG + chr1.4:62910175-62910194 MS.gene004897:CDS 50.0%
CATTGAGCAGGTGGAAGTTC+TGG + chr1.4:62910991-62911010 MS.gene004897:CDS 50.0%
CTTTGTTAGAAAGGGAGGGG+AGG + chr1.4:62910429-62910448 MS.gene004897:CDS 50.0%
GGGAGACGAAGGTCTTGATA+TGG + chr1.4:62910304-62910323 MS.gene004897:CDS 50.0%
GTTGTGACGGCTTATTGCGT+GGG + chr1.4:62910210-62910229 MS.gene004897:CDS 50.0%
TCAGCATCACCTTCATTGCC+AGG - chr1.4:62910008-62910027 None:intergenic 50.0%
TGTTGTGACGGCTTATTGCG+TGG + chr1.4:62910209-62910228 MS.gene004897:CDS 50.0%
TTCCAACAGCCTCTAACCTC+GGG - chr1.4:62910350-62910369 None:intergenic 50.0%
! AAAGGGAGGGGAGGTGTAAT+TGG + chr1.4:62910438-62910457 MS.gene004897:CDS 50.0%
! TCTCATGGTTTGGGAGACGA+AGG + chr1.4:62910293-62910312 MS.gene004897:CDS 50.0%
! TGCTTTGGATGCTTGCTGCA+TGG + chr1.4:62910862-62910881 MS.gene004897:CDS 50.0%
! TTTGGATGCTTGCTGCATGG+AGG + chr1.4:62910865-62910884 MS.gene004897:CDS 50.0%
!! GAAGGTGATAATGGCGAGCA+GGG + chr1.4:62909306-62909325 MS.gene004897:CDS 50.0%
!! TGAAGGTGATAATGGCGAGC+AGG + chr1.4:62909305-62909324 MS.gene004897:CDS 50.0%
AACTTGGGCTGATGAGGTGG+AGG + chr1.4:62910178-62910197 MS.gene004897:CDS 55.0%
ACGCTGTAATGAGGCCTCTC+AGG - chr1.4:62910392-62910411 None:intergenic 55.0%
CTGCATGCTCCCCAATATGG+TGG - chr1.4:62910961-62910980 None:intergenic 55.0%
CTGCATGGAGGAGGTAGACT+GGG + chr1.4:62910877-62910896 MS.gene004897:CDS 55.0%
GACGACGAGGGTGAAACCAA+TGG + chr1.4:62909030-62909049 MS.gene004897:CDS 55.0%
GACGAGGGTGAAACCAATGG+AGG + chr1.4:62909033-62909052 MS.gene004897:CDS 55.0%
TAGCCCTCTCGAGCAGATCT+AGG - chr1.4:62910652-62910671 None:intergenic 55.0%
TCCAACAGCCTCTAACCTCG+GGG - chr1.4:62910349-62910368 None:intergenic 55.0%
TGGCTGCATGCTCCCCAATA+TGG - chr1.4:62910964-62910983 None:intergenic 55.0%
ACCCCGAGGTTAGAGGCTGT+TGG + chr1.4:62910345-62910364 MS.gene004897:CDS 60.0%
AGGGCAGTAGCCGACGCTTT+GGG + chr1.4:62910518-62910537 MS.gene004897:CDS 60.0%
GCTGCATGGAGGAGGTAGAC+TGG + chr1.4:62910876-62910895 MS.gene004897:CDS 60.0%
! GGATGCTTGCTGCATGGAGG+AGG + chr1.4:62910868-62910887 MS.gene004897:CDS 60.0%
GAGGGCAGTAGCCGACGCTT+TGG + chr1.4:62910517-62910536 MS.gene004897:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 62908994 62911081 62908994 ID=MS.gene004897
chr1.4 mRNA 62908994 62911081 62908994 ID=MS.gene004897.t1;Parent=MS.gene004897
chr1.4 exon 62908994 62911081 62908994 ID=MS.gene004897.t1.exon1;Parent=MS.gene004897.t1
chr1.4 CDS 62908994 62911081 62908994 ID=cds.MS.gene004897.t1;Parent=MS.gene004897.t1
Gene Sequence

>MS.gene004897

ATGAAGACTCCGAGCAAGAAAAACAAAAGAACTGAAGACGACGAGGGTGAAACCAATGGAGGTGATCCATATATGTCCGAAAGCAATGTAGCTGATCTGCCTTTGACCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAGAAACTGAGTGAAGAAAGCAATCATAAGAAGTATAATGAGTTCAAAAGCAATGAATGTGAAGATGATGACCACGGAAAGAAGATGAAAAAGAAGCGGAAGCTAGTTGAAGGAAACACACTTGAGGAGGGTAACAACTTTAGAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGGAAAAATTGAGTGAGAAAAGCAAACATAAGGAGTATAACGAGTTCAAAAGTAACAAATGTGAAGCTAACAACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAGCACACTGAAGGAATGTAACGACTTTAGAAGCAATGATGATGAAGATGGTGAGCGAGAGAAAAAGATGAAGAAAAAGAAGAAACCAAGTGAAGAAGGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGATTGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCAGAAATTAATTGAAGGAAACACACTTAATGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGAGGGTAAGCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCAAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAGAAGAAGAAACTAATTGAGGAAGCCAAACTTAAGGAGTATAGTGACATTATAAGCAATGAAGGTGATACTGATACTTGTTTCTCTGTCACTGAAGTTAATGATGAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGATAGTTACAAGCGAGTCTCCTAACTGTGCACGTAATGAAACTCCTGGCAATGAAGGTGATGCTGATGCTTGTTTCTCCGTCAGTGAAGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTAACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAGGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACACCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTGGAGTATATAGATTCTCATGGTTTGGGAGACGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCCGAGGTTAGAGGCTGTTGGAAAGAAATCGCAAAAAGCATACCTGAGAGGCCTCATTACAGCGTGTATAACCGTGCTCATGCTTTGTTAGAAAGGGAGGGGAGGTGTAATTGGACACCTGAAGAGCTGGAATTTATTGAAAAGACCTACGAGCAACATGGATCTAGTTGGAGGGCAGTAGCCGACGCTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCATGGCGCCGATTAAAATATACCAAAACAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTCGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTACGAGCAATTAACATCAGCATTGGTTGCTAGTGGTGATTGGTGTGATACCGATGACTTCCGCTTGATAAACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTATGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCAGCCAAGTCATTCATTGAGCAGGTGGAAGTTCTGGCAAAGAGATTCTGCCCTAACCTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA
Protein sequence

>MS.gene004897.t1

MKTPSKKNKRTEDDEGETNGGDPYMSESNVADLPLTKSNKSEDGEQGKKKKKKKKKLSEESNHKKYNEFKSNECEDDDHGKKMKKKRKLVEGNTLEEGNNFRSNEGDNGEQGKKKKKKEKLSEKSKHKEYNEFKSNKCEANNQGKKMKKKLIEGSTLKECNDFRSNDDEDGEREKKMKKKKKPSEEGTHKEYSEFKSNDCEDDQGKKTKKKQKLIEGNTLNECNDFRSNGGEEGKQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKKKKLIEEAKLKEYSDIISNEGDTDTCFSVTEVNDEGKKMKKKKKAKIVTSESPNCARNETPGNEGDADACFSVSEVNDQGKKMKKKKKAKTVTSESPNCAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTPEEDEKIKAAVLEYIDSHGLGDEGLDMVLNVKLHPEVRGCWKEIAKSIPERPHYSVYNRAHALLEREGRCNWTPEELEFIEKTYEQHGSSWRAVADALGKSRDQVKDAWRRLKYTKTKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSALVASGDWCDTDDFRLINALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC