AlfalfaGEDB | MS.gene004897

M. sativa cultivar XinJiangDaYe / MS.gene004897

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34 PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004897.t1	RHN45016.1	92.3	310	24	0	386	695	420	729	7.00E-174	620.9
MS.gene004897.t1	RHN45016.1	89.2	37	4	0	1	37	1	37	1.80E-07	68.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004897.t1	O14108	22.8	219	129	5	416	602	251	461	2.2e-06	55.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004897.t1	A0A396GV57	92.3	310	24	0	386	695	420	729	5.1e-174	620.9
MS.gene004897.t1	A0A396GV57	89.2	37	4	0	1	37	1	37	1.3e-07	68.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene004897.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004897.t1	MTR_8g077990	80.352	738	57	8	1	695	1	693	0.0	1005
MS.gene004897.t1	MTR_1g076600	96.040	101	4	0	595	695	55	155	2.68e-67	218
MS.gene004897.t1	MTR_7g029435	94.565	92	5	0	604	695	1	92	7.65e-58	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004897.t1	AT5G41020	55.124	283	126	1	410	692	302	583	1.33e-112	352

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Find 134 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACTGAAGACGACGA+GGG	0.720222	1.4:+62909018	MS.gene004897:CDS
AAAAGCAATAAAAGTGAAGA+TGG	0.528970	1.4:+62909102	MS.gene004897:CDS
AAAAGGACATTGGTCCCAAG+AGG	0.666914	1.4:+62910598	MS.gene004897:CDS
AAAAGTGAAGATGGCGAGCA+AGG	0.538269	1.4:+62909111	MS.gene004897:CDS
AAACCTAGATCTGCTCGAGA+GGG	0.608007	1.4:+62910646	MS.gene004897:CDS
AAAGGGAGGGGAGGTGTAAT+TGG	0.255934	1.4:+62910438	MS.gene004897:CDS
AAATGTCAAATTACACCCCG+AGG	0.668903	1.4:+62910331	MS.gene004897:CDS
AAATGTGAAGCTAACAACCA+AGG	0.685022	1.4:+62909402	MS.gene004897:CDS
AAATTACACCCCGAGGTTAG+AGG	0.442409	1.4:+62910338	MS.gene004897:CDS
AACAAACCTGTGATTTGTTG+AGG	0.586181	1.4:+62911061	MS.gene004897:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGATCCACCATATT+GGG	+	chr1.4:62910948-62910967	MS.gene004897:CDS	30.0%
AATGAATGTGAAGATGATGA+TGG	+	chr1.4:62909207-62909226	MS.gene004897:CDS	30.0%
AGTGACATTATAAGCAATGA+AGG	+	chr1.4:62909864-62909883	MS.gene004897:CDS	30.0%
CCAAAACAAAAAAAGGACAT+TGG	+	chr1.4:62910588-62910607	MS.gene004897:CDS	30.0%
GAAAGAAGATGAAAAAGAAG+CGG	+	chr1.4:62909232-62909251	MS.gene004897:CDS	30.0%
GAAGAAGAAGAAACTAATTG+AGG	+	chr1.4:62909821-62909840	MS.gene004897:CDS	30.0%
GATAAACGCTTTATATGCTT+TGG	+	chr1.4:62910847-62910866	MS.gene004897:CDS	30.0%
GGGAAAGAAGAAAAAGAAAA+AGG	+	chr1.4:62909326-62909345	MS.gene004897:CDS	30.0%
GTATATAGATTCTCATGGTT+TGG	+	chr1.4:62910283-62910302	MS.gene004897:CDS	30.0%
GTTGCGAGATAATATTTGTT+GGG	+	chr1.4:62910703-62910722	MS.gene004897:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	62908994	62911081	62908994	ID=MS.gene004897
chr1.4	mRNA	62908994	62911081	62908994	ID=MS.gene004897.t1;Parent=MS.gene004897
chr1.4	exon	62908994	62911081	62908994	ID=MS.gene004897.t1.exon1;Parent=MS.gene004897.t1
chr1.4	CDS	62908994	62911081	62908994	ID=cds.MS.gene004897.t1;Parent=MS.gene004897.t1

Gene Sequence

>MS.gene004897

ATGAAGACTCCGAGCAAGAAAAACAAAAGAACTGAAGACGACGAGGGTGAAACCAATGGAGGTGATCCATATATGTCCGAAAGCAATGTAGCTGATCTGCCTTTGACCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAGAAACTGAGTGAAGAAAGCAATCATAAGAAGTATAATGAGTTCAAAAGCAATGAATGTGAAGATGATGACCACGGAAAGAAGATGAAAAAGAAGCGGAAGCTAGTTGAAGGAAACACACTTGAGGAGGGTAACAACTTTAGAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGGAAAAATTGAGTGAGAAAAGCAAACATAAGGAGTATAACGAGTTCAAAAGTAACAAATGTGAAGCTAACAACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAGCACACTGAAGGAATGTAACGACTTTAGAAGCAATGATGATGAAGATGGTGAGCGAGAGAAAAAGATGAAGAAAAAGAAGAAACCAAGTGAAGAAGGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGATTGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCAGAAATTAATTGAAGGAAACACACTTAATGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGAGGGTAAGCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCAAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAGAAGAAGAAACTAATTGAGGAAGCCAAACTTAAGGAGTATAGTGACATTATAAGCAATGAAGGTGATACTGATACTTGTTTCTCTGTCACTGAAGTTAATGATGAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGATAGTTACAAGCGAGTCTCCTAACTGTGCACGTAATGAAACTCCTGGCAATGAAGGTGATGCTGATGCTTGTTTCTCCGTCAGTGAAGTTAATGATCAAGGCAAAAAGATGAAGAAAAAAAAGAAAGCAAAGACAGTAACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAGGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACACCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTGGAGTATATAGATTCTCATGGTTTGGGAGACGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCCGAGGTTAGAGGCTGTTGGAAAGAAATCGCAAAAAGCATACCTGAGAGGCCTCATTACAGCGTGTATAACCGTGCTCATGCTTTGTTAGAAAGGGAGGGGAGGTGTAATTGGACACCTGAAGAGCTGGAATTTATTGAAAAGACCTACGAGCAACATGGATCTAGTTGGAGGGCAGTAGCCGACGCTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCATGGCGCCGATTAAAATATACCAAAACAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTCGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTACGAGCAATTAACATCAGCATTGGTTGCTAGTGGTGATTGGTGTGATACCGATGACTTCCGCTTGATAAACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTATGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCAGCCAAGTCATTCATTGAGCAGGTGGAAGTTCTGGCAAAGAGATTCTGCCCTAACCTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>MS.gene004897.t1

MKTPSKKNKRTEDDEGETNGGDPYMSESNVADLPLTKSNKSEDGEQGKKKKKKKKKLSEESNHKKYNEFKSNECEDDDHGKKMKKKRKLVEGNTLEEGNNFRSNEGDNGEQGKKKKKKEKLSEKSKHKEYNEFKSNKCEANNQGKKMKKKLIEGSTLKECNDFRSNDDEDGEREKKMKKKKKPSEEGTHKEYSEFKSNDCEDDQGKKTKKKQKLIEGNTLNECNDFRSNGGEEGKQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKKKKLIEEAKLKEYSDIISNEGDTDTCFSVTEVNDEGKKMKKKKKAKIVTSESPNCARNETPGNEGDADACFSVSEVNDQGKKMKKKKKAKTVTSESPNCAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTPEEDEKIKAAVLEYIDSHGLGDEGLDMVLNVKLHPEVRGCWKEIAKSIPERPHYSVYNRAHALLEREGRCNWTPEELEFIEKTYEQHGSSWRAVADALGKSRDQVKDAWRRLKYTKTKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSALVASGDWCDTDDFRLINALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC