AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00491

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00491.t1 MTR_1g018090 91.218 353 26 3 1 352 1 349 0.0 599
MS.gene00491.t1 MTR_1g018090 91.875 320 21 3 1 319 1 316 0.0 524
MS.gene00491.t1 MTR_3g103030 49.737 380 119 12 1 368 1 320 1.72e-97 293
MS.gene00491.t1 MTR_5g005110 52.821 195 78 5 179 363 120 310 5.34e-51 173
MS.gene00491.t1 MTR_1g106460 51.579 190 69 5 189 363 143 324 6.61e-49 168
MS.gene00491.t1 MTR_1g106470 51.124 178 81 3 190 365 111 284 7.14e-47 161
MS.gene00491.t1 MTR_1g106480 55.000 120 21 2 276 365 38 154 8.22e-34 123
MS.gene00491.t1 MTR_5g079500 65.000 60 21 0 286 345 227 286 1.95e-22 96.7
MS.gene00491.t1 MTR_5g005110 45.270 148 67 5 179 316 120 263 1.68e-21 93.2
MS.gene00491.t1 MTR_4g131160 52.564 78 37 0 263 340 182 259 1.27e-19 89.7
MS.gene00491.t1 MTR_4g131160 52.564 78 37 0 263 340 185 262 1.27e-19 89.7
MS.gene00491.t1 MTR_8g093500 66.071 56 19 0 286 341 123 178 1.29e-18 85.1
MS.gene00491.t1 MTR_3g101810 62.963 54 20 0 286 339 180 233 8.93e-18 82.8
MS.gene00491.t1 MTR_1g106470 41.221 131 71 3 190 318 111 237 5.89e-17 79.7
MS.gene00491.t1 MTR_7g069590 56.364 55 24 0 284 338 33 87 9.83e-17 77.0
MS.gene00491.t1 MTR_1g080890 56.923 65 28 0 276 340 192 256 1.06e-16 80.9
MS.gene00491.t1 MTR_1g106460 39.860 143 61 5 189 315 143 276 1.08e-16 79.7
MS.gene00491.t1 MTR_4g070320 40.517 116 62 3 230 340 94 207 5.08e-15 75.9
MS.gene00491.t1 MTR_4g033295 57.576 66 27 1 276 340 117 182 3.76e-14 70.9
MS.gene00491.t1 MTR_4g033295 55.224 67 29 1 276 341 117 183 4.04e-14 70.5
MS.gene00491.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 9.94e-14 72.4
MS.gene00491.t1 MTR_3g116770 38.136 118 67 3 226 340 141 255 1.02e-13 72.4
MS.gene00491.t1 MTR_5g037250 34.307 137 70 3 224 340 40 176 6.37e-13 68.2
MS.gene00491.t1 MTR_1g019240 35.354 99 59 1 261 354 64 162 8.23e-13 68.2
MS.gene00491.t1 MTR_5g048860 35.915 142 75 4 215 340 288 429 1.31e-12 69.3
MS.gene00491.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.66e-12 68.9
MS.gene00491.t1 MTR_8g065740 34.247 146 81 4 201 340 233 369 1.72e-12 68.9
MS.gene00491.t1 MTR_8g012290 52.308 65 30 1 277 340 291 355 1.74e-12 68.9
MS.gene00491.t1 MTR_1g084980 45.455 66 36 0 275 340 460 525 1.87e-12 68.9
MS.gene00491.t1 MTR_7g053410 52.308 65 30 1 277 340 317 381 2.05e-12 68.6
MS.gene00491.t1 MTR_7g053410 53.125 64 29 1 278 340 318 381 2.07e-12 68.6
MS.gene00491.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.36e-12 68.2
MS.gene00491.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.45e-12 68.2
MS.gene00491.t1 MTR_8g062240 49.231 65 32 1 277 340 151 215 2.46e-12 67.0
MS.gene00491.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.63e-12 68.2
MS.gene00491.t1 MTR_1g017350 50.769 65 31 1 277 340 260 324 2.70e-12 68.2
MS.gene00491.t1 MTR_1g052470 54.545 66 29 1 276 340 297 362 3.73e-12 67.4
MS.gene00491.t1 MTR_1g069155 39.506 81 47 1 275 355 315 393 4.48e-12 67.8
MS.gene00491.t1 MTR_3g449770 36.364 99 50 3 279 369 311 404 4.57e-12 67.4
MS.gene00491.t1 MTR_3g498825 52.308 65 30 1 277 340 147 211 8.44e-12 65.9
MS.gene00491.t1 MTR_4g065870 53.030 66 30 1 276 340 354 419 8.58e-12 66.6
MS.gene00491.t1 MTR_8g099880 49.231 65 32 1 277 340 145 209 1.88e-11 65.1
MS.gene00491.t1 MTR_7g092540 55.556 63 27 1 278 339 244 306 2.33e-11 64.3
MS.gene00491.t1 MTR_1g116790 50.000 68 33 1 276 342 264 331 2.88e-11 64.3
MS.gene00491.t1 MTR_5g017040 42.188 64 37 0 290 353 118 181 3.38e-11 64.3
MS.gene00491.t1 MTR_7g092510 42.308 78 44 1 264 340 160 237 8.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00491.t1 AT2G14760 86.316 95 13 0 271 365 231 325 7.26e-54 181
MS.gene00491.t1 AT1G27740 63.514 148 45 3 220 367 119 257 9.25e-54 178
MS.gene00491.t1 AT4G33880 79.612 103 21 0 258 360 247 349 3.96e-53 179
MS.gene00491.t1 AT2G14760 75.926 108 13 1 271 365 231 338 3.89e-50 171
MS.gene00491.t1 AT5G43175 56.463 147 63 1 221 367 77 222 1.31e-46 159
MS.gene00491.t1 AT1G66470 54.255 94 38 2 253 345 174 263 5.61e-25 103
MS.gene00491.t1 AT5G37800 56.667 90 34 2 257 345 184 269 7.77e-25 103
MS.gene00491.t1 AT2G24260 56.410 78 31 1 266 340 21 98 8.67e-21 90.9
MS.gene00491.t1 AT4G30980 46.465 99 47 2 244 340 99 193 1.50e-20 91.3
MS.gene00491.t1 AT4G30980 46.465 99 47 2 244 340 147 241 2.14e-20 91.7
MS.gene00491.t1 AT2G24260 56.410 78 31 1 266 340 124 201 2.95e-20 91.3
MS.gene00491.t1 AT3G21330 62.500 56 21 0 284 339 276 331 6.84e-18 84.7
MS.gene00491.t1 AT5G58010 56.923 65 28 0 276 340 98 162 1.28e-17 82.8
MS.gene00491.t1 AT5G01305 51.515 66 29 1 274 336 31 96 9.30e-17 77.8
MS.gene00491.t1 AT4G00120 46.970 66 34 1 286 351 121 185 9.55e-16 75.5
MS.gene00491.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.52e-15 75.1
MS.gene00491.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.52e-15 75.1
MS.gene00491.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.54e-15 75.1
MS.gene00491.t1 AT5G50915 51.724 87 38 4 278 361 137 222 4.54e-15 75.1
MS.gene00491.t1 AT1G18400 53.846 65 29 1 277 340 145 209 7.27e-14 71.2
MS.gene00491.t1 AT1G18400 54.688 64 28 1 278 340 146 209 1.28e-13 70.5
MS.gene00491.t1 AT2G18300 31.875 160 92 4 185 340 103 249 1.63e-13 71.2
MS.gene00491.t1 AT2G18300 31.875 160 92 4 185 340 103 249 1.93e-13 70.9
MS.gene00491.t1 AT1G26260 36.364 132 74 3 212 340 112 236 1.98e-13 70.9
MS.gene00491.t1 AT1G35460 54.545 66 29 1 276 340 180 245 2.23e-13 70.1
MS.gene00491.t1 AT1G26260 36.424 151 86 4 195 340 120 265 2.23e-13 71.2
MS.gene00491.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.35e-13 71.2
MS.gene00491.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.35e-13 71.2
MS.gene00491.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.35e-13 71.2
MS.gene00491.t1 AT1G26260 36.424 151 86 4 195 340 142 287 2.35e-13 71.2
MS.gene00491.t1 AT2G18300 31.875 160 92 4 185 340 103 249 2.63e-13 70.9
MS.gene00491.t1 AT1G25330 46.341 82 43 1 277 357 104 185 4.33e-13 68.6
MS.gene00491.t1 AT4G09180 52.941 68 31 1 276 342 183 250 4.40e-13 68.9
MS.gene00491.t1 AT3G07340 34.337 166 83 5 189 340 169 322 4.51e-13 70.5
MS.gene00491.t1 AT1G73830 40.187 107 60 2 247 352 117 220 4.77e-13 68.9
MS.gene00491.t1 AT1G73830 40.187 107 60 2 247 352 117 220 4.83e-13 68.9
MS.gene00491.t1 AT3G07340 34.337 166 83 5 189 340 169 322 4.87e-13 70.5
MS.gene00491.t1 AT2G42280 55.385 65 28 1 276 339 278 342 2.21e-12 68.2
MS.gene00491.t1 AT1G59640 49.231 65 32 1 277 340 136 200 2.51e-12 67.0
MS.gene00491.t1 AT3G23690 37.168 113 54 2 245 340 143 255 2.78e-12 67.8
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G09530 37.864 103 58 2 253 349 307 409 2.87e-12 68.2
MS.gene00491.t1 AT1G51140 52.308 65 30 1 276 339 303 367 3.86e-12 67.4
MS.gene00491.t1 AT5G48560 52.308 65 30 1 277 340 301 365 3.88e-12 67.8
MS.gene00491.t1 AT5G48560 53.125 64 29 1 278 340 302 365 4.43e-12 67.4
MS.gene00491.t1 AT4G34530 50.769 65 31 1 277 340 172 236 5.60e-12 66.6
MS.gene00491.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.75e-12 67.0
MS.gene00491.t1 AT1G10120 51.562 64 30 1 278 340 207 270 5.75e-12 67.0
MS.gene00491.t1 AT1G59640 49.231 65 32 1 277 340 136 200 7.11e-12 66.2
MS.gene00491.t1 AT4G00050 41.463 82 43 2 263 344 96 172 1.06e-11 65.5
MS.gene00491.t1 AT2G42280 54.688 64 28 1 276 338 278 341 1.35e-11 65.5
MS.gene00491.t1 AT1G68920 50.769 65 31 1 277 340 302 366 1.61e-11 65.9
MS.gene00491.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.63e-11 65.9
MS.gene00491.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.63e-11 65.9
MS.gene00491.t1 AT1G68920 50.769 65 31 1 277 340 303 367 1.63e-11 65.9
MS.gene00491.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.09e-11 65.5
MS.gene00491.t1 AT4G00050 41.463 82 43 2 263 344 198 274 2.17e-11 65.1
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.45e-11 64.7
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.45e-11 64.7
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.45e-11 64.7
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 278 341 3.45e-11 64.7
MS.gene00491.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.82e-11 63.9
MS.gene00491.t1 AT4G28790 39.560 91 52 2 264 354 260 347 3.88e-11 64.7
MS.gene00491.t1 AT4G36540 47.692 65 33 1 277 340 141 205 3.90e-11 63.9
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.17e-11 64.3
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.17e-11 64.3
MS.gene00491.t1 AT2G20180 46.875 64 34 0 277 340 207 270 4.17e-11 64.3
MS.gene00491.t1 AT2G46970 32.967 91 56 1 276 361 222 312 5.60e-11 63.9
MS.gene00491.t1 AT2G46970 32.967 91 56 1 276 361 191 281 5.89e-11 63.9
MS.gene00491.t1 AT2G46970 32.967 91 56 1 276 361 200 290 6.52e-11 63.9
MS.gene00491.t1 AT4G36930 39.189 74 45 0 284 357 198 271 6.94e-11 63.5

Find 52 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATTACAATCTCATTA+AGG 0.173245 1.3:-4713887 None:intergenic
TGCAAGTGATGATCATATTT+TGG 0.179137 1.3:+4713935 MS.gene00491:CDS
GATCAAAATTCACTTCTTCT+AGG 0.206106 1.3:+4713585 MS.gene00491:CDS
GAGAAATATAGTTAGAGTTT+TGG 0.293615 1.3:-4713707 None:intergenic
TACCCTTGCATATAGACTTT+GGG 0.321694 1.3:-4714495 None:intergenic
AAGAAATCCCATTCTCCTTC+AGG 0.327986 1.3:-4713510 None:intergenic
TTCCATTACAATCTCATTAA+GGG 0.348435 1.3:-4713886 None:intergenic
TATGCACCACTTGCTTATAA+TGG 0.352026 1.3:+4715049 MS.gene00491:CDS
TGGTTATAATACTCAAATAA+TGG 0.360333 1.3:+4713965 MS.gene00491:CDS
ATCAAAATTCACTTCTTCTA+GGG 0.385839 1.3:+4713586 MS.gene00491:CDS
ATTAATAATAGAGGATCAAA+TGG 0.401696 1.3:+4714356 MS.gene00491:CDS
CCTTCAGGGAAAGTACCTAT+AGG 0.408509 1.3:-4713495 None:intergenic
GGAACTACTCTCAACTCAAA+TGG 0.413988 1.3:+4714437 MS.gene00491:CDS
TTACCCTTGCATATAGACTT+TGG 0.415798 1.3:-4714496 None:intergenic
TACTTTCCCTGAAGGAGAAT+GGG 0.424302 1.3:+4713503 MS.gene00491:CDS
TGCTTGGTGTGAAGATCAAC+AGG 0.425932 1.3:-4713990 None:intergenic
TTATTTACTAGTACTTGATC+AGG 0.442578 1.3:-4713798 None:intergenic
AGTTGCAAATGCAGCTCAAA+AGG 0.443724 1.3:+4714015 MS.gene00491:CDS
AATATTACCTTTGTTCCGTT+CGG 0.447590 1.3:-4714688 None:intergenic
CTGCATTTGCAACTCATGCT+TGG 0.451532 1.3:-4714006 None:intergenic
ATCCCTTAATGAGATTGTAA+TGG 0.463322 1.3:+4713884 MS.gene00491:CDS
CTTCTTCTAGGGGAAAATGA+TGG 0.464779 1.3:+4713597 MS.gene00491:CDS
ACAGAAGAGATTAATAATAG+AGG 0.477922 1.3:+4714347 MS.gene00491:CDS
GAACTACTCTCAACTCAAAT+GGG 0.480885 1.3:+4714438 MS.gene00491:CDS
GCTTATAATGGACTTGACCT+TGG 0.488445 1.3:+4715061 MS.gene00491:CDS
AATGCTTCTCAAGAAAATAG+TGG 0.493032 1.3:+4714413 MS.gene00491:CDS
GTACTTTCCCTGAAGGAGAA+TGG 0.496433 1.3:+4713502 MS.gene00491:CDS
TTATAGAATATGGAACCTAT+AGG 0.524720 1.3:+4713480 None:intergenic
ACCCTTGCATATAGACTTTG+GGG 0.534775 1.3:-4714494 None:intergenic
ATCCCCAAAGTCTATATGCA+AGG 0.542852 1.3:+4714492 MS.gene00491:CDS
AGAAATCCCATTCTCCTTCA+GGG 0.544452 1.3:-4713509 None:intergenic
ATTTCAATTATATAGGGCCA+AGG 0.547971 1.3:+4714263 MS.gene00491:intron
TCAAAATTCACTTCTTCTAG+GGG 0.551527 1.3:+4713587 MS.gene00491:CDS
TGAGGTTGAGATTGAGTCCA+AGG 0.556070 1.3:-4715078 None:intergenic
GAAAGTTGCTAACAATGAAG+AGG 0.569015 1.3:+4714319 MS.gene00491:CDS
ATTACAATCTCATTAAGGGA+TGG 0.572980 1.3:-4713882 None:intergenic
GAAACTTGATGTGATAGAAG+TGG 0.575721 1.3:+4714037 MS.gene00491:CDS
TATAAGTACAATGCTTGAAG+AGG 0.587398 1.3:+4714830 MS.gene00491:CDS
TATATCTTTGAAGCTCATAG+TGG 0.590762 1.3:-4715112 None:intergenic
GAAAATGATGGATTGAACAA+TGG 0.593371 1.3:+4713609 MS.gene00491:CDS
TCCCCAAAGTCTATATGCAA+GGG 0.597305 1.3:+4714493 MS.gene00491:CDS
TCTTGTACCGAACGGAACAA+AGG 0.602216 1.3:+4714681 MS.gene00491:CDS
CTCTAGTAGCAACATTTCTG+AGG 0.611763 1.3:+4714385 MS.gene00491:CDS
CCTATAGGTACTTTCCCTGA+AGG 0.620831 1.3:+4713495 MS.gene00491:CDS
AATTTCAGCAGTGCAAAATG+TGG 0.624595 1.3:-4713640 None:intergenic
TTACAAAATCTTGTACCGAA+CGG 0.632772 1.3:+4714673 MS.gene00491:CDS
AAGGATGCATGAAAATTGCA+AGG 0.634976 1.3:+4714282 MS.gene00491:CDS
ACTTGATGTGATAGAAGTGG+AGG 0.635683 1.3:+4714040 MS.gene00491:CDS
GGGAAGACAAGAGCTAGTAG+AGG 0.635890 1.3:+4714458 MS.gene00491:CDS
TCAAGTCCATTATAAGCAAG+TGG 0.638289 1.3:-4715055 None:intergenic
GCTTCTCAAGAAAATAGTGG+AGG 0.669375 1.3:+4714416 MS.gene00491:CDS
ATAGTGGTAGAGAACTGTTG+AGG 0.720764 1.3:-4715096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATACTTTTTTTATT+TGG + chr1.3:4714605-4714624 MS.gene00491:intron 10.0%
!!! TTTTGTTTTAATATTGAAAT+TGG + chr1.3:4714725-4714744 MS.gene00491:intron 10.0%
!! ATTAATAATAGAGGATCAAA+TGG + chr1.3:4714356-4714375 MS.gene00491:CDS 20.0%
!! TGGTTATAATACTCAAATAA+TGG + chr1.3:4713965-4713984 MS.gene00491:CDS 20.0%
!!! GTCGTTATTTCAATTATATA+GGG + chr1.3:4714257-4714276 MS.gene00491:intron 20.0%
!!! TGTTTTAATATTGAAATTGG+TGG + chr1.3:4714728-4714747 MS.gene00491:intron 20.0%
!!! TTGTTAATTTTTTCTTCAAC+AGG - chr1.3:4714068-4714087 None:intergenic 20.0%
! AAGAGAATTAATTTCATGGA+TGG + chr1.3:4714793-4714812 MS.gene00491:intron 25.0%
! ACAATAGGAGACATTATATA+TGG + chr1.3:4714898-4714917 MS.gene00491:intron 25.0%
! ACAGAAGAGATTAATAATAG+AGG + chr1.3:4714347-4714366 MS.gene00491:CDS 25.0%
! ATAAAATTGATCACCATATC+CGG - chr1.3:4714219-4714238 None:intergenic 25.0%
! ATCAAAATTCACTTCTTCTA+GGG + chr1.3:4713586-4713605 MS.gene00491:CDS 25.0%
! GTACAAGAGAATTAATTTCA+TGG + chr1.3:4714789-4714808 MS.gene00491:intron 25.0%
! TTATTTACTAGTACTTGATC+AGG - chr1.3:4713801-4713820 None:intergenic 25.0%
! TTCCATTACAATCTCATTAA+GGG - chr1.3:4713889-4713908 None:intergenic 25.0%
!! ATTTTGTTGCTAGTAAGATT+AGG - chr1.3:4714151-4714170 None:intergenic 25.0%
!! ATTTTTACAGACTCAAATCA+AGG + chr1.3:4714869-4714888 MS.gene00491:CDS 25.0%
!! CGTCGTTATTTCAATTATAT+AGG + chr1.3:4714256-4714275 MS.gene00491:intron 25.0%
!! GAGAAATATAGTTAGAGTTT+TGG - chr1.3:4713710-4713729 None:intergenic 25.0%
!! TATATCCAATGATTTTTGCA+TGG + chr1.3:4713833-4713852 MS.gene00491:CDS 25.0%
!!! GATCATATTTTGGAGAAAAA+TGG + chr1.3:4713945-4713964 MS.gene00491:CDS 25.0%
AAATCAAGGTAAAGCACAAT+AGG + chr1.3:4714883-4714902 MS.gene00491:intron 30.0%
AATATTACCTTTGTTCCGTT+CGG - chr1.3:4714691-4714710 None:intergenic 30.0%
AATGCTTCTCAAGAAAATAG+TGG + chr1.3:4714413-4714432 MS.gene00491:CDS 30.0%
ATCCCTTAATGAGATTGTAA+TGG + chr1.3:4713884-4713903 MS.gene00491:CDS 30.0%
ATTACAATCTCATTAAGGGA+TGG - chr1.3:4713885-4713904 None:intergenic 30.0%
ATTTCAATTATATAGGGCCA+AGG + chr1.3:4714263-4714282 MS.gene00491:intron 30.0%
CTTCCATTACAATCTCATTA+AGG - chr1.3:4713890-4713909 None:intergenic 30.0%
GATCAAAATTCACTTCTTCT+AGG + chr1.3:4713585-4713604 MS.gene00491:CDS 30.0%
TATAAGTACAATGCTTGAAG+AGG + chr1.3:4714830-4714849 MS.gene00491:CDS 30.0%
TCAAAATTCACTTCTTCTAG+GGG + chr1.3:4713587-4713606 MS.gene00491:CDS 30.0%
TTACAAAATCTTGTACCGAA+CGG + chr1.3:4714673-4714692 MS.gene00491:CDS 30.0%
! TGCAAGTGATGATCATATTT+TGG + chr1.3:4713935-4713954 MS.gene00491:CDS 30.0%
! TTTTCATGCGACAAATTCAT+TGG + chr1.3:4714753-4714772 MS.gene00491:intron 30.0%
!! GAAAATGATGGATTGAACAA+TGG + chr1.3:4713609-4713628 MS.gene00491:CDS 30.0%
AAGGATGCATGAAAATTGCA+AGG + chr1.3:4714282-4714301 MS.gene00491:CDS 35.0%
AATTTCAGCAGTGCAAAATG+TGG - chr1.3:4713643-4713662 None:intergenic 35.0%
ATTTCATGGATGGTTTATGC+AGG + chr1.3:4714803-4714822 MS.gene00491:intron 35.0%
CTAAAAAGCGGAATTAGAGA+CGG - chr1.3:4714185-4714204 None:intergenic 35.0%
CTCATCCATGCAAAAATCAT+TGG - chr1.3:4713841-4713860 None:intergenic 35.0%
GAAACTTGATGTGATAGAAG+TGG + chr1.3:4714037-4714056 MS.gene00491:CDS 35.0%
GAAAGTTGCTAACAATGAAG+AGG + chr1.3:4714319-4714338 MS.gene00491:CDS 35.0%
GAACTACTCTCAACTCAAAT+GGG + chr1.3:4714438-4714457 MS.gene00491:CDS 35.0%
GCATCTTCAACACTAAAAAG+CGG - chr1.3:4714197-4714216 None:intergenic 35.0%
TACCCTTGCATATAGACTTT+GGG - chr1.3:4714498-4714517 None:intergenic 35.0%
TATGCACCACTTGCTTATAA+TGG + chr1.3:4715049-4715068 MS.gene00491:CDS 35.0%
TCAAGTCCATTATAAGCAAG+TGG - chr1.3:4715058-4715077 None:intergenic 35.0%
TTACCCTTGCATATAGACTT+TGG - chr1.3:4714499-4714518 None:intergenic 35.0%
! ACATTTTGCACTGCTGAAAT+TGG + chr1.3:4713642-4713661 MS.gene00491:CDS 35.0%
! TTGCAATTTTCATGCATCCT+TGG - chr1.3:4714283-4714302 None:intergenic 35.0%
!! CTTTTTAGTGTTGAAGATGC+CGG + chr1.3:4714197-4714216 MS.gene00491:intron 35.0%
!! TTTTGAGCTCTGATGATATG+TGG + chr1.3:4715023-4715042 MS.gene00491:CDS 35.0%
!!! CTTACATCTTTTGAAATGCG+AGG - chr1.3:4714116-4714135 None:intergenic 35.0%
!!! GAAATGCGAGGTTTTTTCTT+CGG - chr1.3:4714104-4714123 None:intergenic 35.0%
AAGAAATCCCATTCTCCTTC+AGG - chr1.3:4713513-4713532 None:intergenic 40.0%
ACCCTTGCATATAGACTTTG+GGG - chr1.3:4714497-4714516 None:intergenic 40.0%
ACTTGATGTGATAGAAGTGG+AGG + chr1.3:4714040-4714059 MS.gene00491:CDS 40.0%
AGAAATCCCATTCTCCTTCA+GGG - chr1.3:4713512-4713531 None:intergenic 40.0%
AGTTGCAAATGCAGCTCAAA+AGG + chr1.3:4714015-4714034 MS.gene00491:CDS 40.0%
ATAGTGGTAGAGAACTGTTG+AGG - chr1.3:4715099-4715118 None:intergenic 40.0%
ATCCCCAAAGTCTATATGCA+AGG + chr1.3:4714492-4714511 MS.gene00491:CDS 40.0%
CTCTAGTAGCAACATTTCTG+AGG + chr1.3:4714385-4714404 MS.gene00491:CDS 40.0%
GCTTCTCAAGAAAATAGTGG+AGG + chr1.3:4714416-4714435 MS.gene00491:CDS 40.0%
GGAACTACTCTCAACTCAAA+TGG + chr1.3:4714437-4714456 MS.gene00491:CDS 40.0%
TACTTTCCCTGAAGGAGAAT+GGG + chr1.3:4713503-4713522 MS.gene00491:CDS 40.0%
TCCCCAAAGTCTATATGCAA+GGG + chr1.3:4714493-4714512 MS.gene00491:CDS 40.0%
! CTTCTTCTAGGGGAAAATGA+TGG + chr1.3:4713597-4713616 MS.gene00491:CDS 40.0%
!! GCTTATAATGGACTTGACCT+TGG + chr1.3:4715061-4715080 MS.gene00491:CDS 40.0%
CCTATAGGTACTTTCCCTGA+AGG + chr1.3:4713495-4713514 MS.gene00491:CDS 45.0%
CTGCATTTGCAACTCATGCT+TGG - chr1.3:4714009-4714028 None:intergenic 45.0%
GTACTTTCCCTGAAGGAGAA+TGG + chr1.3:4713502-4713521 MS.gene00491:CDS 45.0%
TCTTGTACCGAACGGAACAA+AGG + chr1.3:4714681-4714700 MS.gene00491:CDS 45.0%
TGAGGTTGAGATTGAGTCCA+AGG - chr1.3:4715081-4715100 None:intergenic 45.0%
! AGTGTTGAAGATGCCGGATA+TGG + chr1.3:4714203-4714222 MS.gene00491:intron 45.0%
!! CCTTCAGGGAAAGTACCTAT+AGG - chr1.3:4713498-4713517 None:intergenic 45.0%
!! TGCTTGGTGTGAAGATCAAC+AGG - chr1.3:4713993-4714012 None:intergenic 45.0%
!! ATCTTATATTAAAAAAAAAA+AGG - chr1.3:4714941-4714960 None:intergenic 5.0%
GGGAAGACAAGAGCTAGTAG+AGG + chr1.3:4714458-4714477 MS.gene00491:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 4713489 4715120 4713489 ID=MS.gene00491
chr1.3 mRNA 4713489 4715120 4713489 ID=MS.gene00491.t1;Parent=MS.gene00491
chr1.3 exon 4713489 4714130 4713489 ID=MS.gene00491.t1.exon1;Parent=MS.gene00491.t1
chr1.3 CDS 4713489 4714130 4713489 ID=cds.MS.gene00491.t1;Parent=MS.gene00491.t1
chr1.3 exon 4714278 4714514 4714278 ID=MS.gene00491.t1.exon2;Parent=MS.gene00491.t1
chr1.3 CDS 4714278 4714514 4714278 ID=cds.MS.gene00491.t1;Parent=MS.gene00491.t1
chr1.3 exon 4714637 4714702 4714637 ID=MS.gene00491.t1.exon3;Parent=MS.gene00491.t1
chr1.3 CDS 4714637 4714702 4714637 ID=cds.MS.gene00491.t1;Parent=MS.gene00491.t1
chr1.3 exon 4714825 4714890 4714825 ID=MS.gene00491.t1.exon4;Parent=MS.gene00491.t1
chr1.3 CDS 4714825 4714890 4714825 ID=cds.MS.gene00491.t1;Parent=MS.gene00491.t1
chr1.3 exon 4715022 4715120 4715022 ID=MS.gene00491.t1.exon5;Parent=MS.gene00491.t1
chr1.3 CDS 4715022 4715120 4715022 ID=cds.MS.gene00491.t1;Parent=MS.gene00491.t1
Gene Sequence

>MS.gene00491

ATGGAACCTATAGGTACTTTCCCTGAAGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATCATGAATATTACTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAAATGATGGATTGAACAATGGAACACAGTCCACATTTTGCACTGCTGAAATTGGTGAAAATGAGCGTATGTTTTATTCTTTTGATCATGCTCATATCCAAAACTCTAACTATATTTCTCAATCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATTACTATTTTAGTTATCCTGATCAAGTACTAGTAAATAATATTAATAATTGTATATCCAATGATTTTTGCATGGATGAGAATTTGTTTGCTTCTTCTGTTCCATCCCTTAATGAGATTGTAATGGAAGAGAATGTGAGAATGAATGAAGATTCTGCAAGTGATGATCATATTTTGGAGAAAAATGGTTATAATACTCAAATAATGGAACCTGTTGATCTTCACACCAAGCATGAGTTGCAAATGCAGCTCAAAAGGAAACTTGATGTGATAGAAGTGGAGGTTCCTGTTGAAGAAAAAATTAACAACAAATCAGAGAATCCGAAGAAAAAACCTCGCATTTCAAAAGATGTAAGTTTTATTTTGTACCTAATCTTACTAGCAACAAAATTAACGTGAAATCCGTCTCTAATTCCGCTTTTTAGTGTTGAAGATGCCGGATATGGTGATCAATTTTATTTTTTGTCTCTAATTTTCGTCGTTATTTCAATTATATAGGGCCAAGGATGCATGAAAATTGCAAGGTCAAAGAAGAATAAGAAAGTTGCTAACAATGAAGAGGAGATTACAGAAGAGATTAATAATAGAGGATCAAATGGAAATAGCTCTAGTAGCAACATTTCTGAGGATGATAATGCTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGGTAACTAATCAATTACTTCAACTCAAACAAAAAAACTAGCTTGATTTATTTATATATTTTCATATCAAAACAAAAATTAGTTTATGCATATTTATGATACTTTTTTTATTTGGATTTTGCAGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAGTCTTACAAAATCTTGTACCGAACGGAACAAAGGTAATATTAATTGTTGATGTATTTTTGTTTTAATATTGAAATTGGTGGCATTTTCATGCGACAAATTCATTGGTGTGTAATTAATTGTACAAGAGAATTAATTTCATGGATGGTTTATGCAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTACAGACTCAAATCAAGGTAAAGCACAATAGGAGACATTATATATGGATGAATAAAATTTAAATCCTTTTTTTTTTTAATATAAGATATATTCATAAAAGACAAGTACTAATTAATAATCATTGTTTTATTGTCTTTTTTTAATGTAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACCTTGGACTCAATCTCAACCTCAACAGTTCTCTACCACTATGA
Protein sequence

>MS.gene00491.t1

MEPIGTFPEGEWDFFRKMFASEDHEYYSQQFLDQNSLLLGENDGLNNGTQSTFCTAEIGENERMFYSFDHAHIQNSNYISQSQENSYNSNSSASDDTNYYFSYPDQVLVNNINNCISNDFCMDENLFASSVPSLNEIVMEENVRMNEDSASDDHILEKNGYNTQIMEPVDLHTKHELQMQLKRKLDVIEVEVPVEEKINNKSENPKKKPRISKDGQGCMKIARSKKNKKVANNEEEITEEINNRGSNGNSSSSNISEDDNASQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAYNGLDLGLNLNLNSSLPL