Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004936.t1 | PNX73002.1 | 42.6 | 843 | 181 | 8 | 109 | 737 | 1 | 754 | 3.80E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004936.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004936.t1 | A0A2K3L384 | 42.6 | 843 | 181 | 8 | 109 | 737 | 1 | 754 | 2.7e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene004936.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004936.t1 | MTR_3g080590 | 87.742 | 155 | 19 | 0 | 1 | 155 | 1 | 155 | 1.30e-79 | 252 |
| MS.gene004936.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.15e-44 | 164 |
| MS.gene004936.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.52e-35 | 131 |
| MS.gene004936.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.70e-31 | 125 |
| MS.gene004936.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 4.41e-30 | 125 |
| MS.gene004936.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 7.14e-29 | 118 |
| MS.gene004936.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 7.45e-21 | 97.8 |
| MS.gene004936.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.57e-20 | 93.2 |
| MS.gene004936.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 5.54e-18 | 84.7 |
| MS.gene004936.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.28e-16 | 75.5 |
| MS.gene004936.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.13e-13 | 67.4 |
| MS.gene004936.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.24e-13 | 73.2 |
| MS.gene004936.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 7.52e-13 | 71.2 |
| MS.gene004936.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.63e-12 | 70.9 |
| MS.gene004936.t1 | MTR_6g051425 | 28.261 | 184 | 121 | 5 | 112 | 287 | 24 | 204 | 4.16e-12 | 68.9 |
| MS.gene004936.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 8.71e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004936.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.15e-19 | 92.0 |
| MS.gene004936.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.44e-19 | 92.0 |
| MS.gene004936.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.73e-19 | 92.0 |
| MS.gene004936.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.98e-19 | 92.0 |
| MS.gene004936.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.98e-19 | 92.0 |
| MS.gene004936.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.97e-18 | 90.9 |
| MS.gene004936.t1 | AT4G38180 | 30.337 | 267 | 170 | 9 | 33 | 290 | 3 | 262 | 1.60e-15 | 81.3 |
| MS.gene004936.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 5.26e-18 | 89.4 |
| MS.gene004936.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 5.26e-18 | 89.4 |
| MS.gene004936.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 5.26e-18 | 89.4 |
| MS.gene004936.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 5.26e-18 | 89.4 |
| MS.gene004936.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 5.26e-18 | 89.4 |
| MS.gene004936.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 2.93e-16 | 84.0 |
| MS.gene004936.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 2.93e-16 | 84.0 |
| MS.gene004936.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 1.98e-15 | 80.9 |
| MS.gene004936.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.08e-15 | 81.3 |
| MS.gene004936.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.08e-15 | 81.3 |
| MS.gene004936.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 260 | 449 | 210 | 399 | 2.11e-15 | 80.5 |
| MS.gene004936.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.58e-12 | 70.9 |
| MS.gene004936.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.58e-12 | 70.9 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 7.88e-12 | 69.3 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 7.88e-12 | 69.3 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.20e-11 | 68.9 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.21e-11 | 68.9 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.25e-11 | 68.9 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.25e-11 | 68.9 |
| MS.gene004936.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.38e-11 | 68.6 |
| MS.gene004936.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.85e-11 | 67.4 |
| MS.gene004936.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.86e-11 | 67.4 |
| MS.gene004936.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.86e-11 | 67.4 |
| MS.gene004936.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 7.71e-11 | 66.2 |
Find 142 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 1.4:-63338157 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 1.4:-63337920 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 1.4:-63337131 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 1.4:-63335832 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 1.4:-63338432 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 1.4:-63335840 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 1.4:-63337384 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 1.4:-63338108 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 1.4:+63335948 | MS.gene004936:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 1.4:-63335942 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 1.4:+63335495 | MS.gene004936:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 1.4:+63335743 | MS.gene004936:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 1.4:-63337539 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 1.4:+63335488 | MS.gene004936:CDS |
| TTTAACACTGCTCTGCATAC+TGG | 0.370447 | 1.4:+63338217 | MS.gene004936:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 1.4:-63338253 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 1.4:+63337283 | MS.gene004936:CDS |
| CAGTGTTAAAATGTGATGAT+AGG | 0.372070 | 1.4:-63338204 | None:intergenic |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 1.4:+63335894 | MS.gene004936:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 1.4:+63337497 | MS.gene004936:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 1.4:+63338145 | MS.gene004936:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 1.4:-63337102 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 1.4:+63338235 | MS.gene004936:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 1.4:-63337411 | None:intergenic |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 1.4:+63335975 | MS.gene004936:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 1.4:+63337296 | MS.gene004936:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 1.4:-63337593 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 1.4:+63337801 | MS.gene004936:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 1.4:+63337880 | MS.gene004936:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 1.4:+63337536 | MS.gene004936:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 1.4:+63336881 | MS.gene004936:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 1.4:-63335822 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 1.4:-63335704 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 1.4:+63335934 | MS.gene004936:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.459955 | 1.4:-63335795 | None:intergenic |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 1.4:+63337388 | MS.gene004936:CDS |
| TGTGATGATAGGGTAGTTGT+CGG | 0.461578 | 1.4:-63338193 | None:intergenic |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 1.4:+63337361 | MS.gene004936:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 1.4:+63335895 | MS.gene004936:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 1.4:+63335630 | MS.gene004936:CDS |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 1.4:-63335690 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 1.4:+63337344 | MS.gene004936:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 1.4:+63335448 | MS.gene004936:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 1.4:+63337530 | MS.gene004936:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 1.4:+63335966 | MS.gene004936:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 1.4:+63337510 | MS.gene004936:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 1.4:+63337758 | MS.gene004936:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 1.4:+63335596 | MS.gene004936:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 1.4:+63338037 | MS.gene004936:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 1.4:+63335997 | MS.gene004936:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 1.4:-63335217 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 1.4:+63335928 | MS.gene004936:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 1.4:+63335570 | MS.gene004936:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 1.4:-63337482 | None:intergenic |
| AGTGTTAAAATGTGATGATA+GGG | 0.520047 | 1.4:-63338203 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 1.4:-63337019 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 1.4:+63335998 | MS.gene004936:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 1.4:+63335376 | MS.gene004936:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 1.4:+63337135 | MS.gene004936:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 1.4:+63335595 | MS.gene004936:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 1.4:+63337498 | MS.gene004936:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 1.4:-63337225 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 1.4:-63337515 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 1.4:+63337881 | MS.gene004936:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 1.4:-63338181 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 1.4:+63335646 | MS.gene004936:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 1.4:+63338083 | MS.gene004936:CDS |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 1.4:-63337088 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 1.4:+63337185 | MS.gene004936:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 1.4:+63337802 | MS.gene004936:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 1.4:+63337557 | MS.gene004936:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 1.4:+63337785 | MS.gene004936:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 1.4:-63337195 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 1.4:+63337565 | MS.gene004936:CDS |
| AGCTAATTCATGGTTATGAG+AGG | 0.567544 | 1.4:-63335785 | None:intergenic |
| GCTAATTCATGGTTATGAGA+GGG | 0.570482 | 1.4:-63335784 | None:intergenic |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 1.4:+63335554 | MS.gene004936:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 1.4:-63337434 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 1.4:+63335412 | MS.gene004936:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 1.4:-63337080 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 1.4:+63335489 | MS.gene004936:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 1.4:+63337219 | MS.gene004936:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 1.4:+63337558 | MS.gene004936:CDS |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 1.4:+63335633 | MS.gene004936:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 1.4:+63337220 | MS.gene004936:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 1.4:+63338097 | MS.gene004936:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 1.4:+63337337 | MS.gene004936:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 1.4:+63335935 | MS.gene004936:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 1.4:+63336855 | MS.gene004936:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 1.4:+63337338 | MS.gene004936:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 1.4:-63338271 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 1.4:-63338189 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 1.4:+63335980 | MS.gene004936:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 1.4:+63338103 | MS.gene004936:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 1.4:-63337087 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 1.4:+63338374 | MS.gene004936:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 1.4:+63336936 | MS.gene004936:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 1.4:+63335553 | MS.gene004936:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 1.4:+63338098 | MS.gene004936:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 1.4:-63336819 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 1.4:+63335999 | MS.gene004936:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 1.4:+63338408 | MS.gene004936:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 1.4:+63337297 | MS.gene004936:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 1.4:+63335274 | MS.gene004936:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 1.4:+63336030 | MS.gene004936:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 1.4:+63335856 | MS.gene004936:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 1.4:+63335279 | MS.gene004936:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 1.4:-63337349 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 1.4:-63338190 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 1.4:+63336932 | MS.gene004936:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 1.4:+63335228 | MS.gene004936:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 1.4:+63337434 | MS.gene004936:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 1.4:-63338090 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 1.4:+63335981 | MS.gene004936:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 1.4:-63335570 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 1.4:-63335423 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 1.4:+63338148 | MS.gene004936:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 1.4:+63335430 | MS.gene004936:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 1.4:+63335871 | MS.gene004936:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 1.4:-63335808 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 1.4:+63337218 | MS.gene004936:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 1.4:+63335431 | MS.gene004936:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 1.4:+63337761 | MS.gene004936:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 1.4:+63335393 | MS.gene004936:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 1.4:+63335275 | MS.gene004936:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 1.4:+63337559 | MS.gene004936:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 1.4:+63337100 | MS.gene004936:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 1.4:+63337444 | MS.gene004936:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 1.4:+63335634 | MS.gene004936:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 1.4:+63338264 | MS.gene004936:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 1.4:-63337757 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 1.4:+63337286 | MS.gene004936:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 1.4:+63337421 | MS.gene004936:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 1.4:+63335406 | MS.gene004936:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 1.4:+63337355 | MS.gene004936:CDS |
| TGTAGACGCTTTGAACGCAG+AGG | 0.705116 | 1.4:+63337053 | MS.gene004936:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 1.4:+63335388 | MS.gene004936:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 1.4:-63337249 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 1.4:+63335276 | MS.gene004936:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 1.4:+63335225 | MS.gene004936:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 1.4:-63336728 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 1.4:+63335510 | MS.gene004936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | + | chr1.4:63338130-63338149 | MS.gene004936:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | + | chr1.4:63338131-63338150 | MS.gene004936:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | - | chr1.4:63338359-63338378 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | + | chr1.4:63337686-63337705 | MS.gene004936:intron | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr1.4:63335966-63335985 | MS.gene004936:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | chr1.4:63336881-63336900 | MS.gene004936:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | chr1.4:63336969-63336988 | MS.gene004936:CDS | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | + | chr1.4:63338132-63338151 | MS.gene004936:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | chr1.4:63336262-63336281 | None:intergenic | 25.0% |
| ! | AGTGTTAAAATGTGATGATA+GGG | - | chr1.4:63338206-63338225 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | - | chr1.4:63337956-63337975 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr1.4:63335664-63335683 | MS.gene004936:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | chr1.4:63336586-63336605 | MS.gene004936:intron | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | - | chr1.4:63338286-63338305 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | chr1.4:63335843-63335862 | None:intergenic | 25.0% |
| ! | TTATCCACTAAAAATGACAA+GGG | - | chr1.4:63336220-63336239 | None:intergenic | 25.0% |
| ! | TTTATCCACTAAAAATGACA+AGG | - | chr1.4:63336221-63336240 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | chr1.4:63336992-63337011 | MS.gene004936:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | chr1.4:63336877-63336896 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | - | chr1.4:63337923-63337942 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | chr1.4:63337201-63337220 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | chr1.4:63336311-63336330 | MS.gene004936:intron | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | + | chr1.4:63338019-63338038 | MS.gene004936:intron | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | chr1.4:63337202-63337221 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | - | chr1.4:63338160-63338179 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | chr1.4:63336289-63336308 | MS.gene004936:intron | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | + | chr1.4:63337880-63337899 | MS.gene004936:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | chr1.4:63336290-63336309 | MS.gene004936:intron | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | chr1.4:63335999-63336018 | MS.gene004936:CDS | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | chr1.4:63336731-63336750 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | + | chr1.4:63337881-63337900 | MS.gene004936:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr1.4:63336189-63336208 | MS.gene004936:intron | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr1.4:63335495-63335514 | MS.gene004936:CDS | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr1.4:63336190-63336209 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr1.4:63335975-63335994 | MS.gene004936:CDS | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | - | chr1.4:63337414-63337433 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr1.4:63335488-63335507 | MS.gene004936:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | chr1.4:63335998-63336017 | MS.gene004936:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr1.4:63335634-63335653 | MS.gene004936:CDS | 30.0% | |
| CAGTGTTAAAATGTGATGAT+AGG | - | chr1.4:63338207-63338226 | None:intergenic | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr1.4:63336084-63336103 | MS.gene004936:intron | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | - | chr1.4:63337596-63337615 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr1.4:63335895-63335914 | MS.gene004936:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | chr1.4:63335220-63335239 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | chr1.4:63335553-63335572 | MS.gene004936:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | chr1.4:63337498-63337517 | MS.gene004936:CDS | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr1.4:63336219-63336238 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr1.4:63335554-63335573 | MS.gene004936:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr1.4:63335633-63335652 | MS.gene004936:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | chr1.4:63335835-63335854 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr1.4:63336193-63336212 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr1.4:63335894-63335913 | MS.gene004936:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr1.4:63335489-63335508 | MS.gene004936:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | chr1.4:63337497-63337516 | MS.gene004936:CDS | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | - | chr1.4:63336647-63336666 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | - | chr1.4:63338051-63338070 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | chr1.4:63336337-63336356 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | chr1.4:63336565-63336584 | MS.gene004936:intron | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | chr1.4:63337388-63337407 | MS.gene004936:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr1.4:63336107-63336126 | MS.gene004936:intron | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | chr1.4:63335907-63335926 | MS.gene004936:CDS | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | chr1.4:63335906-63335925 | MS.gene004936:CDS | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | chr1.4:63336956-63336975 | MS.gene004936:CDS | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | + | chr1.4:63337338-63337357 | MS.gene004936:CDS | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | chr1.4:63337091-63337110 | None:intergenic | 35.0% | |
| AGCTAATTCATGGTTATGAG+AGG | - | chr1.4:63335788-63335807 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr1.4:63335948-63335967 | MS.gene004936:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr1.4:63335811-63335830 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | chr1.4:63337387-63337406 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | chr1.4:63337105-63337124 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | chr1.4:63335596-63335615 | MS.gene004936:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | chr1.4:63337022-63337041 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | + | chr1.4:63336526-63336545 | MS.gene004936:intron | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | chr1.4:63337090-63337109 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | + | chr1.4:63336855-63336874 | MS.gene004936:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | chr1.4:63336400-63336419 | MS.gene004936:intron | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | chr1.4:63335997-63336016 | MS.gene004936:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr1.4:63335630-63335649 | MS.gene004936:CDS | 35.0% | |
| GCTAATTCATGGTTATGAGA+GGG | - | chr1.4:63335787-63335806 | None:intergenic | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | + | chr1.4:63336338-63336357 | MS.gene004936:intron | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr1.4:63335412-63335431 | MS.gene004936:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | - | chr1.4:63338111-63338130 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | + | chr1.4:63337337-63337356 | MS.gene004936:CDS | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | chr1.4:63335825-63335844 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | - | chr1.4:63337724-63337743 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | + | chr1.4:63335225-63335244 | MS.gene004936:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | - | chr1.4:63337485-63337504 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | chr1.4:63337135-63337154 | MS.gene004936:CDS | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr1.4:63335275-63335294 | MS.gene004936:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr1.4:63336144-63336163 | MS.gene004936:intron | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | + | chr1.4:63338098-63338117 | MS.gene004936:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | chr1.4:63336528-63336547 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr1.4:63336113-63336132 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr1.4:63335856-63335875 | MS.gene004936:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | chr1.4:63337283-63337302 | MS.gene004936:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | chr1.4:63336602-63336621 | MS.gene004936:intron | 35.0% |
| ! | TTTAGTGGATAAAACCACCA+TGG | + | chr1.4:63336228-63336247 | MS.gene004936:intron | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | chr1.4:63336601-63336620 | MS.gene004936:intron | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | chr1.4:63336035-63336054 | MS.gene004936:intron | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | - | chr1.4:63338050-63338069 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr1.4:63335646-63335665 | MS.gene004936:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | chr1.4:63337297-63337316 | MS.gene004936:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | chr1.4:63336248-63336267 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | + | chr1.4:63337971-63337990 | MS.gene004936:intron | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr1.4:63336213-63336232 | MS.gene004936:intron | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr1.4:63336106-63336125 | MS.gene004936:intron | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | chr1.4:63335916-63335935 | MS.gene004936:CDS | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | chr1.4:63337463-63337482 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | chr1.4:63336519-63336538 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | chr1.4:63337462-63337481 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | + | chr1.4:63336353-63336372 | MS.gene004936:intron | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | chr1.4:63337218-63337237 | MS.gene004936:CDS | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | + | chr1.4:63338408-63338427 | MS.gene004936:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | chr1.4:63337219-63337238 | MS.gene004936:CDS | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | + | chr1.4:63337361-63337380 | MS.gene004936:CDS | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | + | chr1.4:63335376-63335395 | MS.gene004936:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr1.4:63335798-63335817 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr1.4:63335430-63335449 | MS.gene004936:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | chr1.4:63337252-63337271 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | chr1.4:63335228-63335247 | MS.gene004936:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr1.4:63335743-63335762 | MS.gene004936:CDS | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | chr1.4:63336890-63336909 | MS.gene004936:CDS | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | chr1.4:63336532-63336551 | MS.gene004936:intron | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | - | chr1.4:63338274-63338293 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr1.4:63335431-63335450 | MS.gene004936:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | + | chr1.4:63336352-63336371 | MS.gene004936:intron | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr1.4:63335448-63335467 | MS.gene004936:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | + | chr1.4:63338264-63338283 | MS.gene004936:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | + | chr1.4:63337802-63337821 | MS.gene004936:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | chr1.4:63336932-63336951 | MS.gene004936:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr1.4:63335426-63335445 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr1.4:63335707-63335726 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | chr1.4:63337134-63337153 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | chr1.4:63335595-63335614 | MS.gene004936:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | chr1.4:63337083-63337102 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | chr1.4:63337465-63337484 | MS.gene004936:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr1.4:63335510-63335529 | MS.gene004936:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | chr1.4:63336533-63336552 | MS.gene004936:intron | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | - | chr1.4:63336050-63336069 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | + | chr1.4:63338374-63338393 | MS.gene004936:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | - | chr1.4:63338093-63338112 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | chr1.4:63336569-63336588 | MS.gene004936:intron | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr1.4:63335945-63335964 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | chr1.4:63337100-63337119 | MS.gene004936:CDS | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | + | chr1.4:63338103-63338122 | MS.gene004936:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | - | chr1.4:63338196-63338215 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | chr1.4:63337198-63337217 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr1.4:63335693-63335712 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | chr1.4:63336568-63336587 | MS.gene004936:intron | 40.0% | |
| TTTAACACTGCTCTGCATAC+TGG | + | chr1.4:63338217-63338236 | MS.gene004936:CDS | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr1.4:63336124-63336143 | MS.gene004936:intron | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr1.4:63335276-63335295 | MS.gene004936:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr1.4:63335274-63335293 | MS.gene004936:CDS | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | + | chr1.4:63338097-63338116 | MS.gene004936:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | chr1.4:63336030-63336049 | MS.gene004936:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | chr1.4:63336575-63336594 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | chr1.4:63336245-63336264 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | chr1.4:63337296-63337315 | MS.gene004936:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr1.4:63335919-63335938 | MS.gene004936:CDS | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | chr1.4:63336636-63336655 | MS.gene004936:intron | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | chr1.4:63335915-63335934 | MS.gene004936:CDS | 40.0% |
| AAGACAGCCATTGTGCAAGT+TGG | + | chr1.4:63338083-63338102 | MS.gene004936:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | chr1.4:63337344-63337363 | MS.gene004936:CDS | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | + | chr1.4:63337220-63337239 | MS.gene004936:CDS | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | - | chr1.4:63337542-63337561 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | + | chr1.4:63338235-63338254 | MS.gene004936:CDS | 45.0% | |
| AGAACGACATCAATCTGCGA+AGG | + | chr1.4:63336663-63336682 | MS.gene004936:intron | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | chr1.4:63336439-63336458 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | - | chr1.4:63338192-63338211 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr1.4:63335980-63335999 | MS.gene004936:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | chr1.4:63336414-63336433 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | + | chr1.4:63337758-63337777 | MS.gene004936:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | chr1.4:63337352-63337371 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | - | chr1.4:63337760-63337779 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | + | chr1.4:63336351-63336370 | MS.gene004936:intron | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr1.4:63335573-63335592 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | chr1.4:63337437-63337456 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | + | chr1.4:63337510-63337529 | MS.gene004936:CDS | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | chr1.4:63336936-63336955 | MS.gene004936:CDS | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr1.4:63335406-63335425 | MS.gene004936:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | chr1.4:63337286-63337305 | MS.gene004936:CDS | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | - | chr1.4:63336822-63336841 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | chr1.4:63337558-63337577 | MS.gene004936:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | + | chr1.4:63337761-63337780 | MS.gene004936:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | chr1.4:63337559-63337578 | MS.gene004936:CDS | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | chr1.4:63337421-63337440 | MS.gene004936:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr1.4:63335981-63336000 | MS.gene004936:CDS | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | + | chr1.4:63338145-63338164 | MS.gene004936:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr1.4:63335570-63335589 | MS.gene004936:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | chr1.4:63337434-63337453 | MS.gene004936:CDS | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | chr1.4:63336354-63336373 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | + | chr1.4:63337785-63337804 | MS.gene004936:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | + | chr1.4:63337801-63337820 | MS.gene004936:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | + | chr1.4:63338148-63338167 | MS.gene004936:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr1.4:63335279-63335298 | MS.gene004936:CDS | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | chr1.4:63337536-63337555 | MS.gene004936:CDS | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | chr1.4:63336716-63336735 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | + | chr1.4:63338037-63338056 | MS.gene004936:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | chr1.4:63336713-63336732 | MS.gene004936:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | - | chr1.4:63338256-63338275 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | - | chr1.4:63338193-63338212 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr1.4:63335871-63335890 | MS.gene004936:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | - | chr1.4:63338184-63338203 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | + | chr1.4:63337565-63337584 | MS.gene004936:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | chr1.4:63337185-63337204 | MS.gene004936:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | chr1.4:63337355-63337374 | MS.gene004936:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr1.4:63335388-63335407 | MS.gene004936:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | chr1.4:63337557-63337576 | MS.gene004936:CDS | 50.0% |
| ! | TGTAGACGCTTTGAACGCAG+AGG | + | chr1.4:63337053-63337072 | MS.gene004936:CDS | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | chr1.4:63337444-63337463 | MS.gene004936:CDS | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr1.4:63335934-63335953 | MS.gene004936:CDS | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | chr1.4:63337228-63337247 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr1.4:63335935-63335954 | MS.gene004936:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | chr1.4:63336431-63336450 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr1.4:63335928-63335947 | MS.gene004936:CDS | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr1.4:63335393-63335412 | MS.gene004936:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | chr1.4:63337518-63337537 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | chr1.4:63337530-63337549 | MS.gene004936:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | chr1.4:63336418-63336437 | MS.gene004936:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63335190 | 63338443 | 63335190 | ID=MS.gene004936 |
| chr1.4 | mRNA | 63335190 | 63338443 | 63335190 | ID=MS.gene004936.t1;Parent=MS.gene004936 |
| chr1.4 | exon | 63335190 | 63336051 | 63335190 | ID=MS.gene004936.t1.exon1;Parent=MS.gene004936.t1 |
| chr1.4 | CDS | 63335190 | 63336051 | 63335190 | ID=cds.MS.gene004936.t1;Parent=MS.gene004936.t1 |
| chr1.4 | exon | 63336688 | 63337628 | 63336688 | ID=MS.gene004936.t1.exon2;Parent=MS.gene004936.t1 |
| chr1.4 | CDS | 63336688 | 63337628 | 63336688 | ID=cds.MS.gene004936.t1;Parent=MS.gene004936.t1 |
| chr1.4 | exon | 63337725 | 63337946 | 63337725 | ID=MS.gene004936.t1.exon3;Parent=MS.gene004936.t1 |
| chr1.4 | CDS | 63337725 | 63337946 | 63337725 | ID=cds.MS.gene004936.t1;Parent=MS.gene004936.t1 |
| chr1.4 | exon | 63338037 | 63338285 | 63338037 | ID=MS.gene004936.t1.exon4;Parent=MS.gene004936.t1 |
| chr1.4 | CDS | 63338037 | 63338285 | 63338037 | ID=cds.MS.gene004936.t1;Parent=MS.gene004936.t1 |
| chr1.4 | exon | 63338372 | 63338443 | 63338372 | ID=MS.gene004936.t1.exon5;Parent=MS.gene004936.t1 |
| chr1.4 | CDS | 63338372 | 63338443 | 63338372 | ID=cds.MS.gene004936.t1;Parent=MS.gene004936.t1 |
| Gene Sequence |
| Protein sequence |
