AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004958

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004958.t1 MTR_1g077600 95.506 267 6 5 1 266 11 272 0.0 511
MS.gene004958.t1 MTR_1g077600 95.506 267 6 5 1 266 11 272 0.0 510
MS.gene004958.t1 MTR_3g091820 44.828 290 103 14 21 266 30 306 1.53e-59 191
MS.gene004958.t1 MTR_8g027295 44.211 285 110 14 12 266 4 269 1.89e-58 187
MS.gene004958.t1 MTR_2g093220 75.000 72 18 0 17 88 23 94 1.33e-35 129
MS.gene004958.t1 MTR_3g077750 34.000 300 136 15 16 265 41 328 3.42e-34 126
MS.gene004958.t1 MTR_4g461080 47.445 137 65 2 16 145 11 147 2.76e-33 122
MS.gene004958.t1 MTR_8g068210 66.667 72 24 0 23 94 21 92 2.76e-29 113
MS.gene004958.t1 MTR_4g063780 66.667 72 18 1 31 96 72 143 6.14e-29 112
MS.gene004958.t1 MTR_8g079060 54.444 90 36 1 19 103 14 103 7.00e-29 109
MS.gene004958.t1 MTR_3g090430 60.976 82 24 1 14 95 39 112 1.04e-28 111
MS.gene004958.t1 MTR_1g056810 57.292 96 31 2 28 115 6 99 1.04e-28 110
MS.gene004958.t1 MTR_8g015840 65.823 79 23 2 16 94 5 79 1.07e-28 108
MS.gene004958.t1 MTR_3g435480 49.524 105 49 2 36 136 138 242 1.33e-28 113
MS.gene004958.t1 MTR_2g096740 53.261 92 43 0 34 125 62 153 1.58e-28 110
MS.gene004958.t1 MTR_7g024670 74.194 62 16 0 33 94 76 137 1.68e-28 112
MS.gene004958.t1 MTR_2g096740 53.261 92 43 0 34 125 77 168 1.71e-28 110
MS.gene004958.t1 MTR_8g479350 61.972 71 27 0 29 99 63 133 6.53e-28 109
MS.gene004958.t1 MTR_2g014060 67.692 65 16 1 21 85 17 76 6.96e-28 109
MS.gene004958.t1 MTR_4g088580 59.756 82 28 1 36 112 57 138 2.61e-27 108
MS.gene004958.t1 MTR_4g022370 70.690 58 17 0 31 88 79 136 3.90e-27 108
MS.gene004958.t1 MTR_5g031440 74.074 54 14 0 31 84 40 93 3.48e-26 105
MS.gene004958.t1 MTR_4g109980 75.472 53 13 0 32 84 38 90 7.80e-26 103
MS.gene004958.t1 MTR_2g059540 78.000 50 11 0 33 82 30 79 1.24e-25 100
MS.gene004958.t1 MTR_2g013370 57.971 69 28 1 20 88 32 99 1.78e-25 102
MS.gene004958.t1 MTR_4g082060 57.971 69 29 0 18 86 106 174 1.81e-24 102
MS.gene004958.t1 MTR_2g014170 76.000 50 12 0 33 82 44 93 2.32e-24 99.8
MS.gene004958.t1 MTR_6g012450 48.913 92 44 3 28 119 130 218 3.72e-24 101
MS.gene004958.t1 MTR_7g010950 65.517 58 20 0 34 91 135 192 4.45e-24 100
MS.gene004958.t1 MTR_4g089095 66.667 57 18 1 32 88 48 103 9.63e-24 97.8
MS.gene004958.t1 MTR_4g089095 66.667 57 18 1 32 88 14 69 1.29e-23 96.7
MS.gene004958.t1 MTR_7g086780 44.248 113 53 4 14 124 83 187 1.38e-23 99.0
MS.gene004958.t1 MTR_2g016030 63.636 55 20 0 31 85 44 98 2.03e-23 93.6
MS.gene004958.t1 MTR_5g041420 56.944 72 30 1 23 94 128 198 3.55e-23 96.7
MS.gene004958.t1 MTR_8g044220 56.452 62 27 0 28 89 112 173 4.22e-23 97.8
MS.gene004958.t1 MTR_6g027450 50.000 80 35 1 12 86 62 141 1.63e-22 95.1
MS.gene004958.t1 MTR_6g027460 47.561 82 37 2 5 86 73 148 2.10e-22 95.1
MS.gene004958.t1 MTR_5g041530 55.072 69 31 0 21 89 127 195 4.09e-22 94.7
MS.gene004958.t1 MTR_5g041400 66.667 51 17 0 36 86 121 171 2.66e-20 89.4
MS.gene004958.t1 MTR_5g041380 66.667 51 17 0 36 86 129 179 4.20e-20 89.0
MS.gene004958.t1 MTR_7g059400 24.272 309 146 10 7 263 51 323 5.51e-20 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004958.t1 AT4G24060 37.685 337 133 13 1 266 11 341 3.78e-47 160
MS.gene004958.t1 AT3G61850 42.960 277 102 15 27 266 55 312 4.13e-47 159
MS.gene004958.t1 AT3G61850 42.960 277 102 15 27 266 67 324 5.81e-47 159
MS.gene004958.t1 AT3G61850 42.692 260 99 14 27 266 55 284 6.58e-47 158
MS.gene004958.t1 AT3G61850 42.692 260 99 14 27 266 55 284 6.58e-47 158
MS.gene004958.t1 AT3G61850 42.692 260 99 14 27 266 67 296 1.10e-46 158
MS.gene004958.t1 AT2G46590 39.871 311 112 16 21 266 57 357 1.00e-38 139
MS.gene004958.t1 AT2G46590 39.871 311 112 16 21 266 69 369 1.10e-38 139
MS.gene004958.t1 AT1G64620 36.795 337 126 14 1 259 11 338 6.79e-37 134
MS.gene004958.t1 AT5G60200 52.885 104 47 1 28 129 49 152 3.40e-33 122
MS.gene004958.t1 AT1G51700 59.756 82 33 0 25 106 24 105 2.06e-31 115
MS.gene004958.t1 AT3G55370 69.118 68 21 0 31 98 73 140 3.26e-30 115
MS.gene004958.t1 AT3G55370 69.118 68 21 0 31 98 73 140 4.04e-30 115
MS.gene004958.t1 AT3G55370 59.756 82 31 1 17 98 106 185 4.11e-30 116
MS.gene004958.t1 AT4G00940 82.759 58 10 0 31 88 65 122 6.14e-30 114
MS.gene004958.t1 AT4G00940 82.759 58 10 0 31 88 65 122 6.14e-30 114
MS.gene004958.t1 AT4G00940 82.759 58 10 0 31 88 65 122 6.14e-30 114
MS.gene004958.t1 AT1G21340 43.590 156 77 5 18 165 19 171 7.71e-30 113
MS.gene004958.t1 AT2G28510 50.820 122 50 2 32 145 46 165 1.68e-29 113
MS.gene004958.t1 AT3G45610 56.322 87 36 2 18 104 25 109 1.77e-29 112
MS.gene004958.t1 AT5G65590 68.657 67 21 0 29 95 36 102 6.02e-29 112
MS.gene004958.t1 AT3G52440 75.410 61 15 0 36 96 27 87 1.35e-28 109
MS.gene004958.t1 AT3G52440 75.410 61 15 0 36 96 46 106 1.90e-28 109
MS.gene004958.t1 AT1G07640 78.182 55 12 0 34 88 21 75 7.68e-28 108
MS.gene004958.t1 AT4G38000 61.538 65 25 0 24 88 31 95 9.33e-28 107
MS.gene004958.t1 AT1G07640 78.182 55 12 0 34 88 77 131 9.34e-28 109
MS.gene004958.t1 AT2G37590 70.000 60 18 0 31 90 86 145 9.57e-28 109
MS.gene004958.t1 AT1G07640 78.182 55 12 0 34 88 85 139 1.24e-27 108
MS.gene004958.t1 AT5G60850 58.108 74 31 0 32 105 49 122 1.47e-27 108
MS.gene004958.t1 AT3G21270 73.684 57 15 0 34 90 29 85 1.97e-27 105
MS.gene004958.t1 AT1G28310 48.624 109 56 0 34 142 27 135 2.20e-27 107
MS.gene004958.t1 AT3G50410 61.429 70 27 0 19 88 15 84 2.48e-27 106
MS.gene004958.t1 AT5G66940 65.152 66 23 0 30 95 28 93 2.75e-27 105
MS.gene004958.t1 AT1G28310 48.624 109 56 0 34 142 51 159 3.36e-27 107
MS.gene004958.t1 AT2G28810 67.213 61 20 0 25 85 68 128 8.15e-27 106
MS.gene004958.t1 AT2G28810 67.213 61 20 0 25 85 85 145 1.24e-26 106
MS.gene004958.t1 AT5G02460 54.430 79 34 1 10 88 73 149 7.35e-26 105
MS.gene004958.t1 AT5G62940 72.131 61 14 1 24 84 66 123 9.61e-26 104
MS.gene004958.t1 AT1G47655 61.538 65 25 0 19 83 14 78 1.23e-25 100
MS.gene004958.t1 AT4G21050 68.333 60 19 0 36 95 26 85 1.62e-24 97.8
MS.gene004958.t1 AT2G34140 49.398 83 38 1 4 86 32 110 2.18e-24 96.3
MS.gene004958.t1 AT1G69570 60.526 76 26 1 18 93 120 191 3.03e-24 100
MS.gene004958.t1 AT1G29160 50.667 75 37 0 13 87 41 115 7.78e-24 95.1
MS.gene004958.t1 AT5G62430 53.947 76 31 1 14 89 38 109 9.39e-24 97.8
MS.gene004958.t1 AT5G39660 43.878 98 51 1 28 125 132 225 1.13e-23 99.8
MS.gene004958.t1 AT5G39660 43.878 98 51 1 28 125 132 225 1.13e-23 99.8
MS.gene004958.t1 AT5G39660 43.878 98 51 1 28 125 132 225 1.13e-23 99.8
MS.gene004958.t1 AT3G47500 63.793 58 21 0 34 91 110 167 2.79e-23 98.6
MS.gene004958.t1 AT1G26790 54.545 77 31 1 10 86 91 163 8.59e-23 96.3
MS.gene004958.t1 AT4G21040 75.510 49 12 0 36 84 27 75 1.00e-22 93.6
MS.gene004958.t1 AT4G21080 75.510 49 12 0 36 84 27 75 5.42e-22 92.0
MS.gene004958.t1 AT4G21030 53.333 60 28 0 36 95 23 82 1.66e-13 67.8

Find 61 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATATTGCCTTCTATTAA+TGG 0.125175 1.4:-63603204 None:intergenic
GAAGGCCAAGATCTAAATTT+AGG 0.134252 1.4:+63603555 MS.gene004958:CDS
CTTCTTCATGATGGATCTTA+TGG 0.177246 1.4:-63603536 None:intergenic
CATGATGGATCTTATGGTTT+TGG 0.189658 1.4:-63603530 None:intergenic
GCTTCTTGTTTCTGTTGTTT+TGG 0.223578 1.4:-63603270 None:intergenic
CCCTCACATATCTGATCATT+TGG 0.252769 1.4:+63603581 MS.gene004958:CDS
TGATGGATTTGAAACAAAAT+TGG 0.267429 1.4:-63603478 None:intergenic
TAACCCAACAATATTGGATT+TGG 0.276934 1.4:+63603887 MS.gene004958:CDS
TACAAATAACCCAACAATAT+TGG 0.279491 1.4:+63603881 MS.gene004958:CDS
TTCCTGTTGGTGGTGGTTCT+AGG 0.290051 1.4:+63603424 MS.gene004958:CDS
CCAATGAATTTCTGTTTAGA+TGG 0.293399 1.4:+63603753 MS.gene004958:CDS
TTCATGCCTGCTCAAGTTCA+AGG 0.318142 1.4:+63603696 MS.gene004958:CDS
AAGGATATTCAACAGGGATT+TGG 0.319140 1.4:+63603937 MS.gene004958:CDS
TTCTTCTACTTCTTCAGCAT+TGG 0.346624 1.4:+63603626 MS.gene004958:CDS
TTTGGATCAGAATAATAATA+AGG 0.356949 1.4:+63603905 MS.gene004958:CDS
GGAACCCTAAATTTAGATCT+TGG 0.357337 1.4:-63603560 None:intergenic
AAGGCCAAGATCTAAATTTA+GGG 0.366987 1.4:+63603556 MS.gene004958:CDS
GATCAACAAGGATATTCAAC+AGG 0.388223 1.4:+63603930 MS.gene004958:CDS
TTTGGCTTCCTTTCCAACAT+AGG 0.393371 1.4:-63603252 None:intergenic
GATCCAAATCCAATATTGTT+GGG 0.402423 1.4:-63603890 None:intergenic
GCAAAACATGTAGAAGGTAT+TGG 0.410442 1.4:+63603376 MS.gene004958:CDS
GATCTTGGCCTTCTTCATGA+TGG 0.411783 1.4:-63603545 None:intergenic
TTCTGTTTAGATGGGATCTC+AGG 0.420885 1.4:+63603762 MS.gene004958:CDS
GCATTGGAGCTTCTTACTGC+AGG 0.422714 1.4:+63603642 MS.gene004958:CDS
ACCAACAGGAATGTTTCTAA+TGG 0.426405 1.4:-63603412 None:intergenic
GGGATTTGGACTGGAATGTT+GGG 0.441281 1.4:+63603951 MS.gene004958:CDS
CCTGCTCAAGTTCAAGGTTG+TGG 0.443611 1.4:+63603702 MS.gene004958:CDS
TTCCTAGAACCACCACCAAC+AGG 0.444902 1.4:-63603426 None:intergenic
CCATCTAAACAGAAATTCAT+TGG 0.447886 1.4:-63603753 None:intergenic
CAGGGTTGAGTTCAAGTTCA+AGG 0.452441 1.4:+63603661 MS.gene004958:CDS
ACTGGAATGTTGGGAGGAGG+AGG 0.456613 1.4:+63603960 MS.gene004958:CDS
ATTTCTGCAAAACATGTAGA+AGG 0.460389 1.4:+63603370 MS.gene004958:CDS
GTGTTAATTGAATTACATCT+TGG 0.460868 1.4:-63603303 None:intergenic
TGATCCAAATCCAATATTGT+TGG 0.463007 1.4:-63603891 None:intergenic
AGGGATTTGGACTGGAATGT+TGG 0.470831 1.4:+63603950 MS.gene004958:CDS
CAATGAATTTCTGTTTAGAT+GGG 0.475119 1.4:+63603754 MS.gene004958:CDS
TGGACTGGAATGTTGGGAGG+AGG 0.475312 1.4:+63603957 MS.gene004958:CDS
GGAATGTTGGGAGGAGGAGG+AGG 0.484270 1.4:+63603963 MS.gene004958:CDS
CATTGGAGCTTCTTACTGCA+GGG 0.493465 1.4:+63603643 MS.gene004958:CDS
ACATGTTTCAAATCCTCAAA+AGG 0.498889 1.4:-63603852 None:intergenic
CATAAGATCCATCATGAAGA+AGG 0.500791 1.4:+63603537 MS.gene004958:CDS
AGAAACATTCCTGTTGGTGG+TGG 0.512070 1.4:+63603417 MS.gene004958:CDS
AAGAGACAATTAGTGAAGGA+AGG 0.513089 1.4:+63603820 MS.gene004958:CDS
TATTCAACAGGGATTTGGAC+TGG 0.519358 1.4:+63603942 MS.gene004958:CDS
ATTAGAAACATTCCTGTTGG+TGG 0.530061 1.4:+63603414 MS.gene004958:CDS
AGAGACAATTAGTGAAGGAA+GGG 0.538775 1.4:+63603821 MS.gene004958:CDS
CCACAACCTTGAACTTGAGC+AGG 0.540402 1.4:-63603702 None:intergenic
AGGGTTGAGTTCAAGTTCAA+GGG 0.546615 1.4:+63603662 MS.gene004958:CDS
TCCATTAGAAACATTCCTGT+TGG 0.554777 1.4:+63603411 MS.gene004958:CDS
TGTAGAAGGTATTGGACTCA+AGG 0.565800 1.4:+63603384 MS.gene004958:CDS
ATGGTGAAGCCATTAATAGA+AGG 0.568853 1.4:+63603195 MS.gene004958:CDS
TTAGATGGGATCTCAGGAAG+TGG 0.574889 1.4:+63603768 MS.gene004958:CDS
TATGCAAGTACTCTTGATCA+TGG 0.590246 1.4:+63603792 MS.gene004958:CDS
ATTTGGACTGGAATGTTGGG+AGG 0.599027 1.4:+63603954 MS.gene004958:CDS
ACTTGCTTAAAATCTTGCAA+AGG 0.603902 1.4:-63603729 None:intergenic
CCAAATGATCAGATATGTGA+GGG 0.610063 1.4:-63603581 None:intergenic
ACCAAATGATCAGATATGTG+AGG 0.628381 1.4:-63603582 None:intergenic
GTTCAAGAGACAATTAGTGA+AGG 0.630784 1.4:+63603816 MS.gene004958:CDS
AGAAGGTATTGGACTCAAGG+TGG 0.674278 1.4:+63603387 MS.gene004958:CDS
AATAATAAGGAAGATCAACA+AGG 0.712044 1.4:+63603918 MS.gene004958:CDS
ATCAACAAGGATATTCAACA+GGG 0.718207 1.4:+63603931 MS.gene004958:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGGATCAGAATAATAATA+AGG + chr1.4:63603905-63603924 MS.gene004958:CDS 20.0%
! AATAATAAGGAAGATCAACA+AGG + chr1.4:63603918-63603937 MS.gene004958:CDS 25.0%
! ACAATATTGCCTTCTATTAA+TGG - chr1.4:63603207-63603226 None:intergenic 25.0%
! CAATGAATTTCTGTTTAGAT+GGG + chr1.4:63603754-63603773 MS.gene004958:CDS 25.0%
! GTGTTAATTGAATTACATCT+TGG - chr1.4:63603306-63603325 None:intergenic 25.0%
! TACAAATAACCCAACAATAT+TGG + chr1.4:63603881-63603900 MS.gene004958:CDS 25.0%
!!! TCAAGTATGTTTTTTGTTGA+AGG - chr1.4:63603504-63603523 None:intergenic 25.0%
!!! TGATGGATTTGAAACAAAAT+TGG - chr1.4:63603481-63603500 None:intergenic 25.0%
AAGGCCAAGATCTAAATTTA+GGG + chr1.4:63603556-63603575 MS.gene004958:CDS 30.0%
ACATGTTTCAAATCCTCAAA+AGG - chr1.4:63603855-63603874 None:intergenic 30.0%
ACTTGCTTAAAATCTTGCAA+AGG - chr1.4:63603732-63603751 None:intergenic 30.0%
ATCAACAAGGATATTCAACA+GGG + chr1.4:63603931-63603950 MS.gene004958:CDS 30.0%
ATTTCTGCAAAACATGTAGA+AGG + chr1.4:63603370-63603389 MS.gene004958:CDS 30.0%
CCAATGAATTTCTGTTTAGA+TGG + chr1.4:63603753-63603772 MS.gene004958:CDS 30.0%
CCATCTAAACAGAAATTCAT+TGG - chr1.4:63603756-63603775 None:intergenic 30.0%
GATCCAAATCCAATATTGTT+GGG - chr1.4:63603893-63603912 None:intergenic 30.0%
TAACCCAACAATATTGGATT+TGG + chr1.4:63603887-63603906 MS.gene004958:CDS 30.0%
TACATGTGAAAAACCTATGT+TGG + chr1.4:63603239-63603258 MS.gene004958:CDS 30.0%
TGATCCAAATCCAATATTGT+TGG - chr1.4:63603894-63603913 None:intergenic 30.0%
! CATGTTTTGCAGAAATATCT+TGG - chr1.4:63603366-63603385 None:intergenic 30.0%
!!! ATGTTTTTTGTTGAAGGTGA+TGG - chr1.4:63603498-63603517 None:intergenic 30.0%
AAGAGACAATTAGTGAAGGA+AGG + chr1.4:63603820-63603839 MS.gene004958:CDS 35.0%
AAGGATATTCAACAGGGATT+TGG + chr1.4:63603937-63603956 MS.gene004958:CDS 35.0%
ACCAAATGATCAGATATGTG+AGG - chr1.4:63603585-63603604 None:intergenic 35.0%
AGAGACAATTAGTGAAGGAA+GGG + chr1.4:63603821-63603840 MS.gene004958:CDS 35.0%
ATGGTGAAGCCATTAATAGA+AGG + chr1.4:63603195-63603214 MS.gene004958:CDS 35.0%
ATTAGAAACATTCCTGTTGG+TGG + chr1.4:63603414-63603433 MS.gene004958:CDS 35.0%
CATAAGATCCATCATGAAGA+AGG + chr1.4:63603537-63603556 MS.gene004958:CDS 35.0%
CCAAATGATCAGATATGTGA+GGG - chr1.4:63603584-63603603 None:intergenic 35.0%
GAAGGCCAAGATCTAAATTT+AGG + chr1.4:63603555-63603574 MS.gene004958:CDS 35.0%
GATCAACAAGGATATTCAAC+AGG + chr1.4:63603930-63603949 MS.gene004958:CDS 35.0%
GGAACCCTAAATTTAGATCT+TGG - chr1.4:63603563-63603582 None:intergenic 35.0%
GTGAAAAACCTATGTTGGAA+AGG + chr1.4:63603244-63603263 MS.gene004958:CDS 35.0%
GTTCAAGAGACAATTAGTGA+AGG + chr1.4:63603816-63603835 MS.gene004958:CDS 35.0%
TATGCAAGTACTCTTGATCA+TGG + chr1.4:63603792-63603811 MS.gene004958:CDS 35.0%
TCCATTAGAAACATTCCTGT+TGG + chr1.4:63603411-63603430 MS.gene004958:CDS 35.0%
TTCTTCTACTTCTTCAGCAT+TGG + chr1.4:63603626-63603645 MS.gene004958:CDS 35.0%
! ACCAACAGGAATGTTTCTAA+TGG - chr1.4:63603415-63603434 None:intergenic 35.0%
! GCAAAACATGTAGAAGGTAT+TGG + chr1.4:63603376-63603395 MS.gene004958:CDS 35.0%
!! CTTCTTCATGATGGATCTTA+TGG - chr1.4:63603539-63603558 None:intergenic 35.0%
!!! AAGGGTTTTGTTTCCTTTTG+AGG + chr1.4:63603839-63603858 MS.gene004958:CDS 35.0%
!!! CATGATGGATCTTATGGTTT+TGG - chr1.4:63603533-63603552 None:intergenic 35.0%
!!! GCTTCTTGTTTCTGTTGTTT+TGG - chr1.4:63603273-63603292 None:intergenic 35.0%
CCCTCACATATCTGATCATT+TGG + chr1.4:63603581-63603600 MS.gene004958:CDS 40.0%
TATTCAACAGGGATTTGGAC+TGG + chr1.4:63603942-63603961 MS.gene004958:CDS 40.0%
TTCTGTTTAGATGGGATCTC+AGG + chr1.4:63603762-63603781 MS.gene004958:CDS 40.0%
! AGGGTTGAGTTCAAGTTCAA+GGG + chr1.4:63603662-63603681 MS.gene004958:CDS 40.0%
! TTTGGCTTCCTTTCCAACAT+AGG - chr1.4:63603255-63603274 None:intergenic 40.0%
!! TGTAGAAGGTATTGGACTCA+AGG + chr1.4:63603384-63603403 MS.gene004958:CDS 40.0%
CATTGGAGCTTCTTACTGCA+GGG + chr1.4:63603643-63603662 MS.gene004958:CDS 45.0%
TTAGATGGGATCTCAGGAAG+TGG + chr1.4:63603768-63603787 MS.gene004958:CDS 45.0%
TTCATGCCTGCTCAAGTTCA+AGG + chr1.4:63603696-63603715 MS.gene004958:CDS 45.0%
! AGAAACATTCCTGTTGGTGG+TGG + chr1.4:63603417-63603436 MS.gene004958:CDS 45.0%
! AGGGATTTGGACTGGAATGT+TGG + chr1.4:63603950-63603969 MS.gene004958:CDS 45.0%
! ATTTGGACTGGAATGTTGGG+AGG + chr1.4:63603954-63603973 MS.gene004958:CDS 45.0%
! CAGGGTTGAGTTCAAGTTCA+AGG + chr1.4:63603661-63603680 MS.gene004958:CDS 45.0%
! GATCTTGGCCTTCTTCATGA+TGG - chr1.4:63603548-63603567 None:intergenic 45.0%
! GGGATTTGGACTGGAATGTT+GGG + chr1.4:63603951-63603970 MS.gene004958:CDS 45.0%
!! AGAAGGTATTGGACTCAAGG+TGG + chr1.4:63603387-63603406 MS.gene004958:CDS 45.0%
CCACAACCTTGAACTTGAGC+AGG - chr1.4:63603705-63603724 None:intergenic 50.0%
CCTGCTCAAGTTCAAGGTTG+TGG + chr1.4:63603702-63603721 MS.gene004958:CDS 50.0%
GCATTGGAGCTTCTTACTGC+AGG + chr1.4:63603642-63603661 MS.gene004958:CDS 50.0%
TTCCTAGAACCACCACCAAC+AGG - chr1.4:63603429-63603448 None:intergenic 50.0%
!! TTCCTGTTGGTGGTGGTTCT+AGG + chr1.4:63603424-63603443 MS.gene004958:CDS 50.0%
ACTGGAATGTTGGGAGGAGG+AGG + chr1.4:63603960-63603979 MS.gene004958:CDS 55.0%
! TGGACTGGAATGTTGGGAGG+AGG + chr1.4:63603957-63603976 MS.gene004958:CDS 55.0%
GGAATGTTGGGAGGAGGAGG+AGG + chr1.4:63603963-63603982 MS.gene004958:CDS 60.0%
TGGGAGGAGGAGGAGGATCA+TGG + chr1.4:63603970-63603989 MS.gene004958:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 63603195 63603995 63603195 ID=MS.gene004958
chr1.4 mRNA 63603195 63603995 63603195 ID=MS.gene004958.t1;Parent=MS.gene004958
chr1.4 exon 63603195 63603995 63603195 ID=MS.gene004958.t1.exon1;Parent=MS.gene004958.t1
chr1.4 CDS 63603195 63603995 63603195 ID=cds.MS.gene004958.t1;Parent=MS.gene004958.t1
Gene Sequence

>MS.gene004958

ATGGTGAAGCCATTAATAGAAGGCAATATTGTAGTAGCAACAAATACATGTGAAAAACCTATGTTGGAAAGGAAGCCAAAACAACAGAAACAAGAAGCAATTAACTGTCCAAGATGTAATTCAATTAACACAAAATTCTGTTACTACAACAACTATAGTTTGACACAACCAAGATATTTCTGCAAAACATGTAGAAGGTATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCTAGGAAAAACAACAAAAATAGATCTTCTAATTCTTCCAATTTTGTTTCAAATCCATCACCTTCAACAAAAAACATACTTGATGAAAACCAAAACCATAAGATCCATCATGAAGAAGGCCAAGATCTAAATTTAGGGTTCCCTCACATATCTGATCATTTGGTTCAGCAAAATAACAACACTTCTTCTTCTACTTCTTCAGCATTGGAGCTTCTTACTGCAGGGTTGAGTTCAAGTTCAAGGGATTTGCATTCTTTCATGCCTGCTCAAGTTCAAGGTTGTGGATTTCCTTTGCAAGATTTTAAGCAAGTGCCAATGAATTTCTGTTTAGATGGGATCTCAGGAAGTGGTTATGCAAGTACTCTTGATCATGGTGTTCAAGAGACAATTAGTGAAGGAAGGGTTTTGTTTCCTTTTGAGGATTTGAAACATGTTTCTAGTACAAATAACCCAACAATATTGGATTTGGATCAGAATAATAATAAGGAAGATCAACAAGGATATTCAACAGGGATTTGGACTGGAATGTTGGGAGGAGGAGGAGGATCATGGTAA
Protein sequence

>MS.gene004958.t1

MVKPLIEGNIVVATNTCEKPMLERKPKQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNRSSNSSNFVSNPSPSTKNILDENQNHKIHHEEGQDLNLGFPHISDHLVQQNNNTSSSTSSALELLTAGLSSSSRDLHSFMPAQVQGCGFPLQDFKQVPMNFCLDGISGSGYASTLDHGVQETISEGRVLFPFEDLKHVSSTNNPTILDLDQNNNKEDQQGYSTGIWTGMLGGGGGSW