AlfalfaGEDB | MS.gene00503

M. sativa cultivar XinJiangDaYe / MS.gene00503

KEGG: K22450
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00503.t1	XP_024631841.1	94.3	194	9	2	2	195	1	192	7.90E-99	369.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00503.t1	Q6Z1Y6	62.1	140	50	2	50	187	50	188	3.3e-45	183.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00503.t1	G7ICB6	94.3	194	9	2	2	195	1	192	5.7e-99	369.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene00503.t1	TR	GNAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00503.t1	MTR_1g018030	94.330	194	9	2	2	195	1	192	1.61e-134	374
MS.gene00503.t1	MTR_7g073990	42.282	149	75	2	47	187	97	242	4.56e-31	113

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00503.t1	AT1G26220	60.591	203	65	4	2	195	1	197	9.18e-81	239
MS.gene00503.t1	AT1G32070	41.985	131	60	1	76	190	127	257	9.06e-29	108
MS.gene00503.t1	AT1G32070	41.667	132	60	1	76	190	126	257	2.82e-28	106
MS.gene00503.t1	AT1G32070	41.667	132	60	1	76	190	127	258	2.88e-28	106

Showing 1 to 4 of 4 entries

Previous1Next

Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTGAGGTTTCGTGGT+GGG	0.635153	1.2:+5103898	None:intergenic
AACAAAGTATTCGTAGCAGT+AGG	0.566118	1.2:-5103768	MS.gene00503:CDS
AACAACAACATCCCATATTA+TGG	0.310068	1.2:+5103611	None:intergenic
AAGTTAAGTCGTAGGGAGGA+TGG	0.419412	1.2:+5103939	None:intergenic
ACAAAGTATTCGTAGCAGTA+GGG	0.561588	1.2:-5103767	MS.gene00503:CDS
ACCATTCCACGAATACCATC+AGG	0.547694	1.2:+5103441	None:intergenic
ACTCGAGCACACTGACTCAA+TGG	0.522170	1.2:-5103709	MS.gene00503:CDS
AGCACACTGACTCAATGGTA+TGG	0.558828	1.2:-5103704	MS.gene00503:CDS
AGCCCAAGCCCTTGAAACGA+AGG	0.590595	1.2:+5103585	None:intergenic
AGGCTTATGAGGGATCTTGT+AGG	0.549706	1.2:-5103543	MS.gene00503:CDS

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAACATCCCATATTA+TGG	+	chr1.2:5103777-5103796	None:intergenic	30.0%
ATACTTTGTTAAGTGCTTCT+AGG	+	chr1.2:5103607-5103626	None:intergenic	30.0%
ATTTGAAGAAGTTAAGTCGT+AGG	+	chr1.2:5103457-5103476	None:intergenic	30.0%
TTTGAAGAAGTTAAGTCGTA+GGG	+	chr1.2:5103456-5103475	None:intergenic	30.0%
AAAAACGAGGTTTCATTCTC+CGG	-	chr1.2:5103561-5103580	MS.gene00503:CDS	35.0%
CTCAGAGTAAAGAGCAATAT+TGG	+	chr1.2:5103879-5103898	None:intergenic	35.0%
TTGTTGATCCTTCGTTTCAA+GGG	-	chr1.2:5103792-5103811	MS.gene00503:CDS	35.0%
ATATTGAGAGTGGGTAGTCT+AGG	+	chr1.2:5103526-5103545	None:intergenic	40.0%
CGATAAAAGCCAAGAACTCT+TGG	+	chr1.2:5103902-5103921	None:intergenic	40.0%
GAAGAAGTCGCAGAATAATG+CGG	-	chr1.2:5103712-5103731	MS.gene00503:CDS	40.0%

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	5103410	5103997	5103410	ID=MS.gene00503
chr1.2	mRNA	5103410	5103997	5103410	ID=MS.gene00503.t1;Parent=MS.gene00503
chr1.2	exon	5103410	5103997	5103410	ID=MS.gene00503.t1.exon1;Parent=MS.gene00503.t1
chr1.2	CDS	5103410	5103997	5103410	ID=cds.MS.gene00503.t1;Parent=MS.gene00503.t1

Gene Sequence

>MS.gene00503

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACCCACCACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACACTAGAAAAACGAGGTTTCATTCTCCGGAGAACCTCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCATTGCACTCGAGCACACTGACTCAATGGTATGGATACAACAGAAGAAGTCGCAGAATAATGCGGTTGCATTTGCAAGAGCTACTGGTGATGGTGTTTTCAATGCCATAATATGGGATGTTGTTGTTGATCCTTCGTTTCAAGGGCTTGGGCTAGGGAAAGCTGTTGTGGAGAGGCTTATGAGGGATCTTGTAGGAAGAGGGATTACCAATATTGCTCTTTACTCTGAGCCAAGAGTTCTTGGCTTTTATCGACCTTTGGGTTTTGTTGCTGATCCTGATGGTATTCGTGGAATGGTTTACTCGACAAAAAACAAAAGAAAAAAATAG

Protein sequence

>MS.gene00503.t1

MLLLRGNIYAPLPSSLRLNFFKSQTHPPRNLTISCQASLDYPLSISDETLEKRGFILRRTSEGLNLEALNKVFVAVGFPRRDPEKIRIALEHTDSMVWIQQKKSQNNAVAFARATGDGVFNAIIWDVVVDPSFQGLGLGKAVVERLMRDLVGRGITNIALYSEPRVLGFYRPLGFVADPDGIRGMVYSTKNKRKK