AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005086

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005086.t1 MTR_1g080330 97.938 388 8 0 1 388 1 388 0.0 777
MS.gene005086.t1 MTR_1g080330 98.936 282 3 0 1 282 1 282 0.0 576
MS.gene005086.t1 MTR_7g115530 54.415 419 134 11 8 385 37 439 4.08e-128 376
MS.gene005086.t1 MTR_7g115530 57.516 306 84 8 8 283 37 326 1.27e-98 296
MS.gene005086.t1 MTR_7g098250 44.893 421 176 11 21 388 72 489 1.06e-95 295
MS.gene005086.t1 MTR_7g115530 54.804 281 81 8 8 258 37 301 2.50e-81 251
MS.gene005086.t1 MTR_7g115530 54.717 265 74 8 8 242 37 285 2.65e-74 235
MS.gene005086.t1 MTR_7g115530 51.969 254 76 8 8 231 37 274 4.21e-64 206
MS.gene005086.t1 MTR_7g115530 51.200 250 76 7 8 227 37 270 1.58e-62 202
MS.gene005086.t1 MTR_7g093030 58.955 134 54 1 174 307 211 343 4.26e-51 176
MS.gene005086.t1 MTR_1g053835 55.488 164 59 5 166 329 253 402 4.75e-50 174
MS.gene005086.t1 MTR_2g027860 55.921 152 63 2 175 322 49 200 5.27e-47 163
MS.gene005086.t1 MTR_7g088070 47.849 186 80 3 174 345 49 231 5.46e-46 159
MS.gene005086.t1 MTR_7g088070 47.619 189 80 4 174 345 49 235 8.62e-45 156
MS.gene005086.t1 MTR_6g032990 45.026 191 64 5 171 327 38 221 1.67e-40 148
MS.gene005086.t1 MTR_2g086450 43.558 163 72 2 161 303 31 193 1.30e-36 137
MS.gene005086.t1 MTR_5g027440 42.857 182 81 5 168 326 18 199 1.57e-34 129
MS.gene005086.t1 MTR_5g041350 40.625 160 77 3 171 314 11 168 5.31e-34 129
MS.gene005086.t1 MTR_1g053800 46.479 142 75 1 165 306 167 307 8.68e-34 128
MS.gene005086.t1 MTR_4g081710 41.176 170 78 4 171 325 13 175 1.14e-33 128
MS.gene005086.t1 MTR_6g444980 40.351 171 93 3 165 332 25 189 4.01e-33 127
MS.gene005086.t1 MTR_6g444980 45.985 137 71 2 165 298 25 161 2.49e-32 125
MS.gene005086.t1 MTR_7g093030 60.000 85 33 1 174 258 211 294 1.69e-30 119
MS.gene005086.t1 MTR_7g068600 40.741 162 90 4 175 331 13 173 2.99e-30 116
MS.gene005086.t1 MTR_2g027800 45.652 138 65 3 167 300 31 162 4.24e-29 115
MS.gene005086.t1 MTR_2g027800 41.781 146 73 3 167 300 31 176 2.06e-28 113
MS.gene005086.t1 MTR_1g090670 40.559 143 76 2 167 300 36 178 4.34e-28 112
MS.gene005086.t1 MTR_1g053830 52.273 88 40 2 164 251 8 93 6.58e-25 97.8
MS.gene005086.t1 MTR_7g093010 42.636 129 71 2 174 300 212 339 6.26e-23 99.0
MS.gene005086.t1 MTR_0223s0040 69.643 56 17 0 176 231 19 74 3.90e-20 89.7
MS.gene005086.t1 MTR_2g023580 66.071 56 19 0 176 231 56 111 6.88e-20 88.2
MS.gene005086.t1 MTR_1g112370 67.857 56 18 0 176 231 23 78 7.65e-20 90.1
MS.gene005086.t1 MTR_3g450310 59.649 57 23 0 175 231 19 75 1.56e-19 86.7
MS.gene005086.t1 MTR_3g064840 43.860 114 48 3 143 254 254 353 1.58e-19 90.5
MS.gene005086.t1 MTR_2g016220 56.579 76 32 1 157 231 70 145 7.57e-19 87.4
MS.gene005086.t1 MTR_2g016220 56.579 76 32 1 157 231 70 145 7.62e-19 87.4
MS.gene005086.t1 MTR_7g069660 59.701 67 26 1 166 231 61 127 7.89e-19 87.4
MS.gene005086.t1 MTR_2g084230 61.194 67 25 1 166 231 87 153 1.18e-18 86.3
MS.gene005086.t1 MTR_2g084230 61.194 67 25 1 166 231 87 153 1.56e-18 86.7
MS.gene005086.t1 MTR_8g086410 64.286 56 20 0 176 231 110 165 2.78e-18 86.3
MS.gene005086.t1 MTR_8g086410 64.286 56 20 0 176 231 112 167 2.84e-18 86.3
MS.gene005086.t1 MTR_1g021520 58.824 68 28 0 172 239 123 190 4.58e-18 84.3
MS.gene005086.t1 MTR_8g066310 45.283 106 43 3 136 239 147 239 5.58e-18 84.7
MS.gene005086.t1 MTR_6g071625 62.500 64 22 1 176 237 203 266 1.62e-17 83.6
MS.gene005086.t1 MTR_8g086410 64.815 54 19 0 176 229 112 165 3.42e-17 83.2
MS.gene005086.t1 MTR_5g029470 63.333 60 22 0 172 231 216 275 4.70e-17 82.4
MS.gene005086.t1 MTR_2g016220 58.571 70 28 1 157 225 70 139 5.95e-17 82.0
MS.gene005086.t1 MTR_4g113140 48.235 85 42 1 166 248 226 310 3.66e-15 77.0
MS.gene005086.t1 MTR_2g450070 58.621 58 23 1 171 228 209 265 1.84e-14 75.5
MS.gene005086.t1 MTR_2g450070 58.621 58 23 1 171 228 209 265 1.84e-14 75.5
MS.gene005086.t1 MTR_4g021790 50.000 76 36 2 171 246 164 237 3.47e-14 72.8
MS.gene005086.t1 MTR_4g086835 56.250 64 27 1 175 237 274 337 1.90e-13 71.6
MS.gene005086.t1 MTR_4g021855 41.748 103 50 4 164 258 158 258 2.60e-13 70.5
MS.gene005086.t1 MTR_1g013170 52.941 68 31 1 171 238 187 253 5.86e-13 70.5
MS.gene005086.t1 MTR_3g106220 56.897 58 24 1 171 228 194 250 6.92e-13 70.5
MS.gene005086.t1 MTR_4g131600 54.237 59 26 1 170 228 196 253 7.28e-13 70.5
MS.gene005086.t1 MTR_5g054300 58.929 56 23 0 173 228 196 251 7.75e-13 69.7
MS.gene005086.t1 MTR_5g017980 53.731 67 30 1 172 237 190 256 8.80e-13 68.9
MS.gene005086.t1 MTR_4g121020 43.478 92 43 2 175 258 111 201 8.97e-13 70.1
MS.gene005086.t1 MTR_4g121020 43.478 92 43 2 175 258 215 305 9.92e-13 70.1
MS.gene005086.t1 MTR_4g121020 43.478 92 43 2 175 258 215 305 1.01e-12 70.1
MS.gene005086.t1 MTR_1g093080 50.794 63 31 0 175 237 211 273 1.11e-12 69.3
MS.gene005086.t1 MTR_4g098870 46.739 92 30 3 153 228 294 382 1.24e-12 69.7
MS.gene005086.t1 MTR_4g098870 46.739 92 30 3 153 228 274 362 1.36e-12 69.3
MS.gene005086.t1 MTR_4g098870 46.739 92 30 3 153 228 294 382 1.83e-12 69.3
MS.gene005086.t1 MTR_4g064730 50.000 72 34 2 158 228 113 183 1.88e-12 67.8
MS.gene005086.t1 MTR_4g098870 46.739 92 30 3 153 228 313 401 1.92e-12 68.9
MS.gene005086.t1 MTR_4g098870 46.739 92 30 3 153 228 274 362 2.04e-12 68.9
MS.gene005086.t1 MTR_4g131570 50.000 64 31 1 171 234 199 261 3.17e-12 68.6
MS.gene005086.t1 MTR_4g086835 56.250 64 26 2 175 237 274 336 4.77e-12 67.4
MS.gene005086.t1 MTR_1g032570 55.172 58 25 1 171 228 127 183 5.72e-12 67.4
MS.gene005086.t1 MTR_1g032570 52.941 68 25 2 161 228 192 252 5.74e-12 67.8
MS.gene005086.t1 MTR_4g131580 51.562 64 30 1 171 234 196 258 6.61e-12 67.4
MS.gene005086.t1 MTR_1g013180 55.932 59 25 1 170 228 337 394 8.81e-12 67.0
MS.gene005086.t1 MTR_7g089010 55.556 54 23 1 175 228 91 143 1.33e-11 65.1
MS.gene005086.t1 MTR_5g017980 53.731 67 29 2 172 237 190 255 2.12e-11 65.1
MS.gene005086.t1 MTR_5g017980 53.731 67 29 2 172 237 189 254 2.22e-11 64.7
MS.gene005086.t1 MTR_7g117705 55.172 58 25 1 171 228 187 243 2.77e-11 65.1
MS.gene005086.t1 MTR_2g034960 50.847 59 28 1 170 228 206 263 4.48e-11 64.7
MS.gene005086.t1 MTR_4g078810 49.153 59 29 1 173 231 156 213 5.10e-11 64.3
MS.gene005086.t1 MTR_5g014040 53.448 58 26 1 171 228 307 363 7.99e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005086.t1 AT5G29000 56.972 251 99 6 61 306 76 322 1.97e-83 259
MS.gene005086.t1 AT5G29000 56.972 251 99 6 61 306 76 322 1.97e-83 259
MS.gene005086.t1 AT5G29000 56.972 251 99 6 61 306 119 365 5.92e-83 259
MS.gene005086.t1 AT3G04450 50.909 275 117 7 43 309 71 335 8.22e-78 246
MS.gene005086.t1 AT3G04450 50.909 275 117 7 43 309 71 335 8.22e-78 246
MS.gene005086.t1 AT3G04450 50.909 275 117 7 43 309 111 375 1.71e-77 246
MS.gene005086.t1 AT4G28610 49.346 306 130 9 17 304 57 355 2.90e-77 244
MS.gene005086.t1 AT2G20400 48.889 225 96 4 93 304 142 360 3.51e-55 187
MS.gene005086.t1 AT2G20400 48.673 226 96 5 93 304 142 361 1.83e-53 182
MS.gene005086.t1 AT2G01060 57.764 161 59 3 161 316 5 161 1.77e-51 174
MS.gene005086.t1 AT5G06800 57.343 143 60 1 167 309 184 325 2.98e-49 171
MS.gene005086.t1 AT5G29000 52.778 180 79 4 61 238 119 294 3.37e-49 169
MS.gene005086.t1 AT3G04450 47.761 201 90 6 43 238 111 301 4.43e-48 166
MS.gene005086.t1 AT5G06800 55.405 148 60 2 167 309 184 330 5.39e-47 165
MS.gene005086.t1 AT3G13040 56.643 143 57 1 170 307 236 378 7.40e-43 155
MS.gene005086.t1 AT3G13040 56.643 143 57 1 170 307 236 378 7.40e-43 155
MS.gene005086.t1 AT3G13040 56.643 143 57 1 170 307 236 378 7.40e-43 155
MS.gene005086.t1 AT4G13640 42.105 209 96 6 161 356 22 218 8.54e-42 149
MS.gene005086.t1 AT3G24120 45.882 170 78 4 162 317 27 196 3.84e-40 144
MS.gene005086.t1 AT4G13640 41.509 212 96 7 161 356 22 221 1.22e-39 143
MS.gene005086.t1 AT3G24120 45.087 173 78 5 162 317 27 199 4.16e-38 139
MS.gene005086.t1 AT3G04030 44.304 158 65 2 165 303 35 188 6.82e-38 141
MS.gene005086.t1 AT5G18240 44.379 169 67 3 156 303 26 188 2.44e-37 139
MS.gene005086.t1 AT5G18240 44.379 169 67 3 156 303 26 188 2.44e-37 139
MS.gene005086.t1 AT1G69580 44.311 167 73 2 167 316 26 189 2.85e-37 138
MS.gene005086.t1 AT1G69580 44.706 170 69 5 167 316 26 190 9.08e-37 136
MS.gene005086.t1 AT3G04030 43.038 158 66 3 165 303 35 187 7.85e-35 132
MS.gene005086.t1 AT5G18240 43.787 169 66 4 156 303 26 186 2.68e-34 131
MS.gene005086.t1 AT1G79430 44.295 149 74 3 165 307 24 169 2.87e-34 130
MS.gene005086.t1 AT5G45580 40.373 161 78 1 165 307 13 173 3.94e-33 125
MS.gene005086.t1 AT3G04030 41.772 158 63 3 165 303 35 182 3.31e-32 125
MS.gene005086.t1 AT5G45580 40.645 155 74 1 171 307 3 157 4.75e-32 122
MS.gene005086.t1 AT5G18240 42.012 169 65 4 156 303 26 182 1.36e-31 124
MS.gene005086.t1 AT5G18240 42.012 169 65 4 156 303 26 182 1.36e-31 124
MS.gene005086.t1 AT2G01060 56.757 111 43 2 210 315 1 111 6.86e-31 118
MS.gene005086.t1 AT3G12730 39.752 161 89 4 159 311 7 167 5.30e-30 115
MS.gene005086.t1 AT5G06800 61.644 73 28 0 167 239 184 256 3.25e-25 103
MS.gene005086.t1 AT1G14600 69.643 56 17 0 176 231 24 79 8.50e-20 88.6
MS.gene005086.t1 AT2G42660 56.923 65 28 0 176 240 51 115 1.13e-19 88.2
MS.gene005086.t1 AT4G04605 49.425 87 43 1 163 248 1 87 4.00e-19 85.9
MS.gene005086.t1 AT5G42630 60.938 64 25 0 176 239 106 169 2.20e-18 83.6
MS.gene005086.t1 AT2G02060 67.925 53 17 0 176 228 30 82 3.08e-18 84.0
MS.gene005086.t1 AT2G02060 67.925 53 17 0 176 228 30 82 3.08e-18 84.0
MS.gene005086.t1 AT1G32240 47.674 86 33 1 146 231 196 269 3.20e-18 85.9
MS.gene005086.t1 AT2G40260 60.606 66 25 1 167 231 73 138 3.68e-18 85.9
MS.gene005086.t1 AT1G32240 47.674 86 33 1 146 231 196 269 3.75e-18 85.9
MS.gene005086.t1 AT5G16560 46.535 101 39 3 148 245 204 292 4.32e-18 85.9
MS.gene005086.t1 AT5G42630 60.938 64 25 0 176 239 106 169 5.02e-18 84.0
MS.gene005086.t1 AT4G17695 62.121 66 23 1 176 239 165 230 5.22e-18 84.7
MS.gene005086.t1 AT3G04030 39.655 116 47 2 207 303 1 112 2.01e-17 82.8
MS.gene005086.t1 AT2G06020 52.308 65 31 0 167 231 78 142 3.84e-17 81.6
MS.gene005086.t1 AT2G38300 60.714 56 22 0 176 231 55 110 4.02e-17 82.0
MS.gene005086.t1 AT1G79430 38.318 107 57 3 207 307 1 104 9.13e-16 77.4
MS.gene005086.t1 AT4G04580 55.385 65 28 1 176 240 15 78 1.59e-15 74.3
MS.gene005086.t1 AT2G03500 57.746 71 28 1 169 237 225 295 1.92e-15 77.8
MS.gene005086.t1 AT1G25550 57.143 63 27 0 172 234 206 268 7.75e-15 75.5
MS.gene005086.t1 AT4G37180 52.308 65 31 0 164 228 199 263 8.04e-14 72.4
MS.gene005086.t1 AT4G37180 52.308 65 31 0 164 228 206 270 8.47e-14 72.4
MS.gene005086.t1 AT1G68670 51.515 66 32 0 172 237 212 277 1.44e-13 71.6
MS.gene005086.t1 AT4G31920 48.101 79 39 2 171 249 179 255 1.91e-13 72.0
MS.gene005086.t1 AT3G16857 64.815 54 18 1 175 228 167 219 5.56e-13 70.9
MS.gene005086.t1 AT3G16857 64.815 54 18 1 175 228 237 289 6.29e-13 70.9
MS.gene005086.t1 AT3G16857 64.815 54 18 1 175 228 237 289 6.59e-13 70.9
MS.gene005086.t1 AT5G58080 55.000 60 26 1 169 228 188 246 8.98e-13 70.1
MS.gene005086.t1 AT4G04555 47.143 70 36 1 169 238 8 76 1.02e-12 64.7
MS.gene005086.t1 AT5G44190 54.237 59 26 1 173 231 145 202 1.53e-12 68.9
MS.gene005086.t1 AT2G25180 59.322 59 23 1 170 228 190 247 1.53e-12 69.3
MS.gene005086.t1 AT5G44190 54.237 59 26 1 173 231 145 202 1.87e-12 68.6
MS.gene005086.t1 AT1G49560 55.556 63 28 0 175 237 192 254 2.50e-12 67.8
MS.gene005086.t1 AT2G40970 57.407 54 22 1 175 228 105 157 2.66e-12 66.6
MS.gene005086.t1 AT1G25550 59.259 54 22 0 172 225 206 259 2.67e-12 67.0
MS.gene005086.t1 AT5G05090 55.556 54 23 1 175 228 81 133 3.55e-12 66.6
MS.gene005086.t1 AT3G62670 53.968 63 25 1 175 233 211 273 4.38e-12 67.8
MS.gene005086.t1 AT5G59570 50.820 61 29 1 168 228 134 193 4.90e-12 66.6
MS.gene005086.t1 AT5G59570 50.820 61 29 1 168 228 134 193 4.90e-12 66.6
MS.gene005086.t1 AT3G10760 55.556 54 23 1 175 228 105 157 4.98e-12 67.0
MS.gene005086.t1 AT3G25790 54.545 55 25 0 180 234 201 255 6.19e-12 67.0
MS.gene005086.t1 AT3G46640 45.833 72 38 1 157 228 126 196 6.81e-12 66.6
MS.gene005086.t1 AT3G46640 45.833 72 38 1 157 228 126 196 7.28e-12 66.2
MS.gene005086.t1 AT3G46640 45.833 72 38 1 157 228 126 196 7.28e-12 66.2
MS.gene005086.t1 AT2G20570 55.000 60 26 1 172 231 150 208 1.12e-11 66.2
MS.gene005086.t1 AT4G37180 50.000 62 31 0 164 225 199 260 1.39e-11 65.1
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.77e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.92e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.92e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.92e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.92e-11 65.9
MS.gene005086.t1 AT4G18020 50.769 65 31 1 167 231 288 351 1.92e-11 65.9
MS.gene005086.t1 AT2G20570 40.000 90 48 2 177 261 171 259 2.05e-11 65.5
MS.gene005086.t1 AT1G49190 52.632 57 24 1 175 228 215 271 2.84e-11 65.1
MS.gene005086.t1 AT1G13300 47.619 63 33 0 175 237 181 243 7.18e-11 63.5
MS.gene005086.t1 AT1G67710 57.692 52 22 0 177 228 121 172 9.49e-11 63.5

Find 94 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCTCTGTGCTTGTATTC+TGG 0.101134 1.1:+59588496 None:intergenic
TGTATTCCACATGGTCATTC+TGG 0.149403 1.1:+59590794 None:intergenic
AGGAAGATCATTAACTTCTT+TGG 0.221222 1.1:+59590110 None:intergenic
CACATACCTTCTGATGATTC+TGG 0.228637 1.1:+59589708 None:intergenic
TTGCTCTGTGCTTGTATTCT+GGG 0.237413 1.1:+59588497 None:intergenic
CCGAGAAGTTCATTCCAATT+TGG 0.239899 1.1:+59590679 None:intergenic
ATGATTCTATTCAGCCAAAT+TGG 0.254038 1.1:-59590693 MS.gene005086:CDS
CTCCTTGAAATCCGTTGTTT+TGG 0.268176 1.1:+59590744 None:intergenic
GTTGTTCATGAAGCCGCTTC+TGG 0.275179 1.1:+59588869 None:intergenic
TCTGGAGTCCAACGCATTCT+AGG 0.277206 1.1:+59590054 None:intergenic
GTATTCTGGGAACTTCCTTC+TGG 0.323449 1.1:+59588510 None:intergenic
GAATACAAGCACAGAGCAAA+AGG 0.372831 1.1:-59588493 MS.gene005086:CDS
TTCTGGGTGGGAACATTATC+AGG 0.378603 1.1:+59590811 None:intergenic
ATTGAAGTCAACTTCTTCTC+TGG 0.390129 1.1:+59589258 None:intergenic
GTAGTCGACACAGAAGAATT+AGG 0.399816 1.1:+59590090 None:intergenic
GTATTCCACATGGTCATTCT+GGG 0.400152 1.1:+59590795 None:intergenic
TATACTGCTGCTGTGAAACC+TGG 0.426828 1.1:+59590148 None:intergenic
AGAACTTCATGAGGCCTTTG+TGG 0.428094 1.1:-59590034 MS.gene005086:CDS
AGCTACCGGTGAACTTGAGC+TGG 0.429993 1.1:-59588457 MS.gene005086:CDS
TGCCAAAACAACGGATTTCA+AGG 0.441739 1.1:-59590746 MS.gene005086:CDS
CCAAATTGGAATGAACTTCT+CGG 0.447252 1.1:-59590679 MS.gene005086:CDS
ACAAAGGCCTCATGAAGTTC+TGG 0.447758 1.1:+59590036 None:intergenic
TATTCCCTCTTCCTCGATGC+AGG 0.454247 1.1:-59591007 MS.gene005086:CDS
ATCAAGTTCAAGACACCCTT+AGG 0.470004 1.1:+59589890 None:intergenic
ATATGTAGAGGCTACTCCTA+AGG 0.470935 1.1:-59589906 MS.gene005086:intron
GATAGTGCCACACTTGATAG+TGG 0.493745 1.1:+59588612 None:intergenic
ACATAACGTCACTTTCTTGA+GGG 0.494013 1.1:+59590872 None:intergenic
TGATGATTCTGGTTTGTACC+TGG 0.500432 1.1:+59589719 None:intergenic
AGAAAGTGACGTTATGTCCT+GGG 0.500596 1.1:-59590866 MS.gene005086:CDS
AATTGAAGAATATCTTCAAA+TGG 0.505497 1.1:+59590835 None:intergenic
ATTGTGGTTGTATAGGCCTA+AGG 0.506694 1.1:-59588926 MS.gene005086:intron
TGCAGCCTGCATCGAGGAAG+AGG 0.509129 1.1:+59591002 None:intergenic
AGAAGCATTGCGGCTGCAGA+TGG 0.512926 1.1:-59588896 MS.gene005086:CDS
TACAATGGTTCTGAAGTCTT+GGG 0.514053 1.1:-59590775 MS.gene005086:CDS
AAGAAAGTGACGTTATGTCC+TGG 0.515386 1.1:-59590867 MS.gene005086:CDS
TCTCTTGATGCAAGAGACCC+AGG 0.517615 1.1:-59590166 MS.gene005086:CDS
AATTCCAACATCAGAAGTGT+TGG 0.526621 1.1:-59590973 MS.gene005086:CDS
ATACAATGGTTCTGAAGTCT+TGG 0.526812 1.1:-59590776 MS.gene005086:CDS
TTGAACTTGATGAAAGTTGA+GGG 0.529752 1.1:-59589878 MS.gene005086:CDS
TTGTGGGTGGTGCGGTAAGT+TGG 0.530504 1.1:+59588427 None:intergenic
CGTTATCAGGCTGTTCAGAA+GGG 0.533325 1.1:+59590935 None:intergenic
TTCTCCCAGCTCAAGTTCAC+CGG 0.534132 1.1:+59588452 None:intergenic
ACTTCTTTGGATGGTAGTGA+TGG 0.537531 1.1:+59590123 None:intergenic
GTCTCTTGCATCAAGAGAGA+AGG 0.539948 1.1:+59590171 None:intergenic
AATTTAGAAAACACAAATGA+AGG 0.541617 1.1:-59588576 MS.gene005086:CDS
TCATCTGTAGATGCTTCCCT+TGG 0.544034 1.1:+59588673 None:intergenic
TCATGTGAAAAGCCATCTGC+AGG 0.546156 1.1:-59589843 MS.gene005086:intron
ACGTTATCAGGCTGTTCAGA+AGG 0.551148 1.1:+59590934 None:intergenic
TTGTGGTTGTATAGGCCTAA+GGG 0.553041 1.1:-59588925 MS.gene005086:intron
TCTCTTGCATCAAGAGAGAA+GGG 0.556360 1.1:+59590172 None:intergenic
AGATCATTAACTTCTTTGGA+TGG 0.562377 1.1:+59590114 None:intergenic
TTCAAATGGATCAGTTCCCC+AGG 0.563936 1.1:+59590849 None:intergenic
AATGCTTCTGTAATCCCCTT+AGG 0.564243 1.1:+59588910 None:intergenic
AATACAAGCACAGAGCAAAA+GGG 0.565422 1.1:-59588492 MS.gene005086:CDS
TATGTAGAGGCTACTCCTAA+GGG 0.566576 1.1:-59589905 MS.gene005086:intron
CTGATTGACTGCTTCCACAA+AGG 0.570201 1.1:+59590020 None:intergenic
GACATAACGTCACTTTCTTG+AGG 0.571867 1.1:+59590871 None:intergenic
TTCAGAAATATAGAACTGCC+AGG 0.576431 1.1:-59589737 MS.gene005086:intron
GGAGATGATGCTAAAGCTAC+CGG 0.580790 1.1:-59588471 MS.gene005086:CDS
AATCTAAGCCTAGAATGCGT+TGG 0.584166 1.1:-59590062 MS.gene005086:CDS
AGATTCAGATTGAGAACCAA+GGG 0.585597 1.1:-59588689 MS.gene005086:CDS
GTGGAAGCAGTCAATCAGCT+TGG 0.585863 1.1:-59590015 MS.gene005086:CDS
AACAACGGATTTCAAGGAGT+GGG 0.590584 1.1:-59590740 MS.gene005086:CDS
GAAGCAGTCAATCAGCTTGG+TGG 0.592276 1.1:-59590012 MS.gene005086:CDS
AATGGTTCTGAAGTCTTGGG+TGG 0.595066 1.1:-59590772 MS.gene005086:CDS
ACACTTGATAGTGGAGCAGA+AGG 0.602869 1.1:+59588621 None:intergenic
TATGACAGAACCAAAATCAC+AGG 0.603724 1.1:-59590647 MS.gene005086:intron
CTTGAACTTGATGAAAGTTG+AGG 0.606827 1.1:-59589879 MS.gene005086:CDS
GTGTCCAACACTTCTGATGT+TGG 0.607725 1.1:+59590969 None:intergenic
ATACTGCTGCTGTGAAACCT+GGG 0.609600 1.1:+59590149 None:intergenic
GCGGCTTCATGAACAACTTG+AGG 0.611704 1.1:-59588863 MS.gene005086:intron
CAGATTCAGATTGAGAACCA+AGG 0.612607 1.1:-59588690 MS.gene005086:CDS
AGAATGTATTTCTGAAGCAG+AGG 0.614653 1.1:+59590903 None:intergenic
TTCCACATGGTCATTCTGGG+TGG 0.615350 1.1:+59590798 None:intergenic
GCTACCGGTGAACTTGAGCT+GGG 0.615664 1.1:-59588456 MS.gene005086:CDS
TCCACATGGTCATTCTGGGT+GGG 0.616235 1.1:+59590799 None:intergenic
GCAGCCTGCATCGAGGAAGA+GGG 0.625876 1.1:+59591003 None:intergenic
AAACAACGGATTTCAAGGAG+TGG 0.628215 1.1:-59590741 MS.gene005086:CDS
GTTATCAGGCTGTTCAGAAG+GGG 0.629071 1.1:+59590936 None:intergenic
CAGAACCATTGTATTCCACA+TGG 0.632141 1.1:+59590785 None:intergenic
TGCAGATGGAACTCCAGAAG+CGG 0.633918 1.1:-59588882 MS.gene005086:CDS
TACAAACCAGAATCATCAGA+AGG 0.635144 1.1:-59589714 MS.gene005086:intron
TGTGGTTGTATAGGCCTAAG+GGG 0.641482 1.1:-59588924 MS.gene005086:intron
TTCTGCTCCACTATCAAGTG+TGG 0.642875 1.1:-59588619 MS.gene005086:CDS
ACTTCAGACAACATGCCAGA+AGG 0.644538 1.1:-59588525 MS.gene005086:CDS
AATGACCATGTGGAATACAA+TGG 0.649000 1.1:-59590790 MS.gene005086:CDS
TTGGACTCCAGAACTTCATG+AGG 0.657310 1.1:-59590043 MS.gene005086:CDS
GAAAGTGACGTTATGTCCTG+GGG 0.673471 1.1:-59590865 MS.gene005086:CDS
GGGTGGAAATGCCAAAACAA+CGG 0.682227 1.1:-59590755 MS.gene005086:CDS
GTTTGAGCAACAGATGAAGT+CGG 0.685798 1.1:-59588649 MS.gene005086:CDS
CTCTTGCATCAAGAGAGAAG+GGG 0.697249 1.1:+59590173 None:intergenic
AGGGGATTACAGAAGCATTG+CGG 0.709657 1.1:-59588906 MS.gene005086:CDS
AATTGATGCAGCCTGCATCG+AGG 0.729819 1.1:+59590996 None:intergenic
TCCCACCCAGAATGACCATG+TGG 0.730540 1.1:-59590800 MS.gene005086:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATTATAGATAAGT+AGG + chr1.1:59590233-59590252 None:intergenic 15.0%
!! AAAACAATTATAGATAAGTA+GGG + chr1.1:59590232-59590251 None:intergenic 15.0%
!!! ACATTTTTTTTTCTTTACTT+AGG - chr1.1:59589603-59589622 MS.gene005086:intron 15.0%
!!! TTCTATATTTCTGAAATTAA+GGG + chr1.1:59589680-59589699 None:intergenic 15.0%
!! AAACAATTATAGATAAGTAG+GGG + chr1.1:59590231-59590250 None:intergenic 20.0%
!! AATTGAAGAATATCTTCAAA+TGG + chr1.1:59588590-59588609 None:intergenic 20.0%
!! AATTTAGAAAACACAAATGA+AGG - chr1.1:59590846-59590865 MS.gene005086:CDS 20.0%
!! ACATTAATAACTGTACATAT+TGG + chr1.1:59590461-59590480 None:intergenic 20.0%
!! ATATAAAGTTCATATAAACC+AGG - chr1.1:59589763-59589782 MS.gene005086:intron 20.0%
!! TTAATAAGCACATACATAAT+TGG - chr1.1:59590066-59590085 MS.gene005086:CDS 20.0%
!! TTGCTTATTATTTATATCTG+TGG - chr1.1:59589786-59589805 MS.gene005086:intron 20.0%
!!! GATTTTAATATTGTACTACA+AGG - chr1.1:59588814-59588833 MS.gene005086:intron 20.0%
!!! GTTCTATATTTCTGAAATTA+AGG + chr1.1:59589681-59589700 None:intergenic 20.0%
!!! TTTCTTTTTATAGGCAAATA+CGG - chr1.1:59589875-59589894 MS.gene005086:CDS 20.0%
! ATAATACTAGAATATGTGGA+TGG - chr1.1:59588864-59588883 MS.gene005086:CDS 25.0%
! ATTAACACCATGAGATAATA+AGG + chr1.1:59589498-59589517 None:intergenic 25.0%
! GATATAAATAATAAGCAACC+TGG + chr1.1:59589784-59589803 None:intergenic 25.0%
! GTGAATAATACTAGAATATG+TGG - chr1.1:59588860-59588879 MS.gene005086:intron 25.0%
! TCATCTTCCTTACAAAATAT+GGG + chr1.1:59590653-59590672 None:intergenic 25.0%
! TTCTAGTATTATTCACAGAT+AGG + chr1.1:59588856-59588875 None:intergenic 25.0%
! TTGATTCATCCAAAACAAAT+TGG + chr1.1:59590099-59590118 None:intergenic 25.0%
!! AAAAAACAAACCTGTGATTT+TGG + chr1.1:59588788-59588807 None:intergenic 25.0%
!! AGATTTTCCTTATTATCTCA+TGG - chr1.1:59589488-59589507 MS.gene005086:intron 25.0%
!! GGATAAGAAGTACAAAATAA+AGG + chr1.1:59589458-59589477 None:intergenic 25.0%
!! GTGTTTTCTAAATTTTCAAC+TGG + chr1.1:59590840-59590859 None:intergenic 25.0%
!! GTTAAAATTTTGTCATTCAC+CGG - chr1.1:59589910-59589929 MS.gene005086:intron 25.0%
AAAAAAAATGTACCTGCAGA+TGG + chr1.1:59589594-59589613 None:intergenic 30.0%
AAACGGAAATACATAACAAC+TGG + chr1.1:59589983-59590002 None:intergenic 30.0%
AAACGGTTAAGATACATACA+GGG + chr1.1:59589142-59589161 None:intergenic 30.0%
AAATAACAGTAGGTCTCAAA+CGG + chr1.1:59589159-59589178 None:intergenic 30.0%
AAGGAAAATCTGTAATGAGA+AGG + chr1.1:59589479-59589498 None:intergenic 30.0%
AAGGTATGTGCAAGTTTATA+CGG - chr1.1:59589727-59589746 MS.gene005086:CDS 30.0%
AATGAAGGTCACGAAAAAAT+TGG - chr1.1:59590861-59590880 MS.gene005086:CDS 30.0%
AATTATAGATAAGTAGGGGA+TGG + chr1.1:59590227-59590246 None:intergenic 30.0%
AGATCATTAACTTCTTTGGA+TGG + chr1.1:59589311-59589330 None:intergenic 30.0%
AGGAAGATCATTAACTTCTT+TGG + chr1.1:59589315-59589334 None:intergenic 30.0%
AGTTATAATAACAGAGCACA+AGG + chr1.1:59590676-59590695 None:intergenic 30.0%
ATACTATACTTACATGCAGA+TGG + chr1.1:59589101-59589120 None:intergenic 30.0%
ATGATTCTATTCAGCCAAAT+TGG - chr1.1:59588729-59588748 MS.gene005086:intron 30.0%
ATTATAGATAAGTAGGGGAT+GGG + chr1.1:59590226-59590245 None:intergenic 30.0%
CATCTTCCTTACAAAATATG+GGG + chr1.1:59590652-59590671 None:intergenic 30.0%
GAAGCATGAACATTGAAAAA+CGG + chr1.1:59590000-59590019 None:intergenic 30.0%
GTCATCTTCCTTACAAAATA+TGG + chr1.1:59590654-59590673 None:intergenic 30.0%
GTTAAGCGAAAAATAACAGT+AGG + chr1.1:59589169-59589188 None:intergenic 30.0%
TAATGTAACTAGCTAGTTGT+GGG - chr1.1:59588996-59589015 MS.gene005086:intron 30.0%
TAGTAAACACTAGATCTGTT+CGG + chr1.1:59590412-59590431 None:intergenic 30.0%
TATAACCTATGAAAAAGACG+TGG - chr1.1:59590373-59590392 MS.gene005086:intron 30.0%
TATTAAACCCTAAAGAGAAC+AGG + chr1.1:59590052-59590071 None:intergenic 30.0%
TATTTCTCCTGTTCTCTTTA+GGG - chr1.1:59590042-59590061 MS.gene005086:CDS 30.0%
TCACAAACAAAACATCTTAC+TGG + chr1.1:59589846-59589865 None:intergenic 30.0%
TTACTTAGGAGCTTCTTTAT+GGG - chr1.1:59589617-59589636 MS.gene005086:intron 30.0%
TTATGATGCACATGAAAATC+AGG - chr1.1:59588948-59588967 MS.gene005086:intron 30.0%
TTGAACTTGATGAAAGTTGA+GGG - chr1.1:59589544-59589563 MS.gene005086:intron 30.0%
TTGGATGAATCAAAGAATAG+TGG - chr1.1:59590106-59590125 MS.gene005086:CDS 30.0%
TTTACTTAGGAGCTTCTTTA+TGG - chr1.1:59589616-59589635 MS.gene005086:intron 30.0%
! TTAACTCCCCATATTTTGTA+AGG - chr1.1:59590643-59590662 MS.gene005086:intron 30.0%
! TTATTTCTCCTGTTCTCTTT+AGG - chr1.1:59590041-59590060 MS.gene005086:CDS 30.0%
! TTTTCACATGATAGATGGTA+AGG + chr1.1:59589570-59589589 None:intergenic 30.0%
!!! CACGTTTTTAAGTCTATAGA+CGG + chr1.1:59590200-59590219 None:intergenic 30.0%
AACTCCTTTAACATTGGGAT+AGG - chr1.1:59589953-59589972 MS.gene005086:intron 35.0%
AACTGTACATATTGGAAACG+AGG + chr1.1:59590453-59590472 None:intergenic 35.0%
AATACAAGCACAGAGCAAAA+GGG - chr1.1:59590930-59590949 MS.gene005086:CDS 35.0%
AATGACCATGTGGAATACAA+TGG - chr1.1:59588632-59588651 MS.gene005086:CDS 35.0%
ACATCTTACTGGAGACATTA+CGG + chr1.1:59589835-59589854 None:intergenic 35.0%
AGATTCAGATTGAGAACCAA+GGG - chr1.1:59590733-59590752 MS.gene005086:CDS 35.0%
ATATTGGAAACGAGGACAAT+AGG + chr1.1:59590445-59590464 None:intergenic 35.0%
ATTAATGTCTAGAGACGCTT+TGG - chr1.1:59590473-59590492 MS.gene005086:intron 35.0%
ATTGAAGTCAACTTCTTCTC+TGG + chr1.1:59590167-59590186 None:intergenic 35.0%
CAAACGGTTAAGATACATAC+AGG + chr1.1:59589143-59589162 None:intergenic 35.0%
CAATTGAGAGATGTCATTGT+TGG + chr1.1:59590282-59590301 None:intergenic 35.0%
CATGTGCATCATAAACTAGT+CGG + chr1.1:59588942-59588961 None:intergenic 35.0%
CCAAATTGGAATGAACTTCT+CGG - chr1.1:59588743-59588762 MS.gene005086:intron 35.0%
CCTTCAACTCCTTTAACATT+GGG - chr1.1:59589948-59589967 MS.gene005086:intron 35.0%
CTTGAACTTGATGAAAGTTG+AGG - chr1.1:59589543-59589562 MS.gene005086:intron 35.0%
GTAATGTAACTAGCTAGTTG+TGG - chr1.1:59588995-59589014 MS.gene005086:intron 35.0%
TACAAACCAGAATCATCAGA+AGG - chr1.1:59589708-59589727 MS.gene005086:intron 35.0%
TATGACAGAACCAAAATCAC+AGG - chr1.1:59588775-59588794 MS.gene005086:intron 35.0%
TCCTTCAACTCCTTTAACAT+TGG - chr1.1:59589947-59589966 MS.gene005086:intron 35.0%
TGTTAAAGGAGTTGAAGGAT+CGG + chr1.1:59589946-59589965 None:intergenic 35.0%
TTCAGAAATATAGAACTGCC+AGG - chr1.1:59589685-59589704 MS.gene005086:intron 35.0%
TTTGCCTATCCCAATGTTAA+AGG + chr1.1:59589960-59589979 None:intergenic 35.0%
! AATTCCAACATCAGAAGTGT+TGG - chr1.1:59588449-59588468 MS.gene005086:CDS 35.0%
! ACATAACGTCACTTTCTTGA+GGG + chr1.1:59588553-59588572 None:intergenic 35.0%
! ATGGCTTTTCACATGATAGA+TGG + chr1.1:59589575-59589594 None:intergenic 35.0%
! CTCATGGTGTTAATATGTAG+AGG - chr1.1:59589504-59589523 MS.gene005086:intron 35.0%
!! AGAATGTATTTCTGAAGCAG+AGG + chr1.1:59588522-59588541 None:intergenic 35.0%
!! ATACAATGGTTCTGAAGTCT+TGG - chr1.1:59588646-59588665 MS.gene005086:CDS 35.0%
!! GGATATGCACCAATTTGTTT+TGG - chr1.1:59590087-59590106 MS.gene005086:CDS 35.0%
!! TACAATGGTTCTGAAGTCTT+GGG - chr1.1:59588647-59588666 MS.gene005086:CDS 35.0%
!! TGATTTGCTTTGGTGCATTT+AGG - chr1.1:59589034-59589053 MS.gene005086:intron 35.0%
!! TTTCTGAAGCAGAGGAAAAA+TGG + chr1.1:59588514-59588533 None:intergenic 35.0%
!!! TATGGGTGTGTTTTAATCGA+AGG - chr1.1:59589634-59589653 MS.gene005086:intron 35.0%
AAGAAAGTGACGTTATGTCC+TGG - chr1.1:59588555-59588574 MS.gene005086:CDS 40.0%
AATCTAAGCCTAGAATGCGT+TGG - chr1.1:59589360-59589379 MS.gene005086:intron 40.0%
AATGCTTCTGTAATCCCCTT+AGG + chr1.1:59590515-59590534 None:intergenic 40.0%
AGAAAGTGACGTTATGTCCT+GGG - chr1.1:59588556-59588575 MS.gene005086:CDS 40.0%
AGATCACACAGAAAACACAG+TGG + chr1.1:59590604-59590623 None:intergenic 40.0%
ATATGTAGAGGCTACTCCTA+AGG - chr1.1:59589516-59589535 MS.gene005086:intron 40.0%
ATCAAGTTCAAGACACCCTT+AGG + chr1.1:59589535-59589554 None:intergenic 40.0%
ATGCACCAAAGCAAATCATG+CGG + chr1.1:59589032-59589051 None:intergenic 40.0%
ATTGTGGTTGTATAGGCCTA+AGG - chr1.1:59590496-59590515 MS.gene005086:intron 40.0%
CACATACCTTCTGATGATTC+TGG + chr1.1:59589717-59589736 None:intergenic 40.0%
CACATGAAAATCAGGTCAAG+TGG - chr1.1:59588956-59588975 MS.gene005086:intron 40.0%
CAGAACCATTGTATTCCACA+TGG + chr1.1:59588640-59588659 None:intergenic 40.0%
CAGATTCAGATTGAGAACCA+AGG - chr1.1:59590732-59590751 MS.gene005086:CDS 40.0%
CATCTTACTGGAGACATTAC+GGG + chr1.1:59589834-59589853 None:intergenic 40.0%
CCCAATGTTAAAGGAGTTGA+AGG + chr1.1:59589951-59589970 None:intergenic 40.0%
CCGAGAAGTTCATTCCAATT+TGG + chr1.1:59588746-59588765 None:intergenic 40.0%
CTAGAATATGTGGATGGCAT+TGG - chr1.1:59588870-59588889 MS.gene005086:CDS 40.0%
CTTGTTCCTCTATATGGTTG+AGG - chr1.1:59588896-59588915 MS.gene005086:CDS 40.0%
GAAAATCAGGTCAAGTGGTA+TGG - chr1.1:59588961-59588980 MS.gene005086:intron 40.0%
GAATACAAGCACAGAGCAAA+AGG - chr1.1:59590929-59590948 MS.gene005086:CDS 40.0%
GAGGAAAAATGGACGTTATC+AGG + chr1.1:59588503-59588522 None:intergenic 40.0%
GTAGTCGACACAGAAGAATT+AGG + chr1.1:59589335-59589354 None:intergenic 40.0%
GTATGTGCAAGTTTATACGG+AGG - chr1.1:59589730-59589749 MS.gene005086:CDS 40.0%
GTATTCCACATGGTCATTCT+GGG + chr1.1:59588630-59588649 None:intergenic 40.0%
GTTAAAGGAGTTGAAGGATC+GGG + chr1.1:59589945-59589964 None:intergenic 40.0%
GTTTGAGCAACAGATGAAGT+CGG - chr1.1:59590773-59590792 MS.gene005086:CDS 40.0%
TAAGATACATACAGGGCAAG+AGG + chr1.1:59589135-59589154 None:intergenic 40.0%
TATGTAGAGGCTACTCCTAA+GGG - chr1.1:59589517-59589536 MS.gene005086:intron 40.0%
TCTCTTGCATCAAGAGAGAA+GGG + chr1.1:59589253-59589272 None:intergenic 40.0%
TCTGTGTGATCTTTGTGTGA+AGG - chr1.1:59590612-59590631 MS.gene005086:intron 40.0%
TGGCATCTTGTTCCTCTATA+TGG - chr1.1:59588890-59588909 MS.gene005086:CDS 40.0%
TGTATTCCACATGGTCATTC+TGG + chr1.1:59588631-59588650 None:intergenic 40.0%
TTAAAGGAGTTGAAGGATCG+GGG + chr1.1:59589944-59589963 None:intergenic 40.0%
TTGCTCTGTGCTTGTATTCT+GGG + chr1.1:59590928-59590947 None:intergenic 40.0%
TTGTGGTTGTATAGGCCTAA+GGG - chr1.1:59590497-59590516 MS.gene005086:intron 40.0%
TTTGCTCTGTGCTTGTATTC+TGG + chr1.1:59590929-59590948 None:intergenic 40.0%
! AAACAACGGATTTCAAGGAG+TGG - chr1.1:59588681-59588700 MS.gene005086:CDS 40.0%
! AACAACGGATTTCAAGGAGT+GGG - chr1.1:59588682-59588701 MS.gene005086:CDS 40.0%
! ACTTCTTTGGATGGTAGTGA+TGG + chr1.1:59589302-59589321 None:intergenic 40.0%
! ATCTGTTCGGCTCAGTTTTT+AGG + chr1.1:59590399-59590418 None:intergenic 40.0%
! CTCCTTGAAATCCGTTGTTT+TGG + chr1.1:59588681-59588700 None:intergenic 40.0%
! GACATAACGTCACTTTCTTG+AGG + chr1.1:59588554-59588573 None:intergenic 40.0%
! GCTTTGGATTGTGGTTGTAT+AGG - chr1.1:59590489-59590508 MS.gene005086:intron 40.0%
! TCAGTCTTCACTCGTTTTGT+GGG + chr1.1:59591014-59591033 None:intergenic 40.0%
! TGCCAAAACAACGGATTTCA+AGG - chr1.1:59588676-59588695 MS.gene005086:CDS 40.0%
!! TGATGATTCTGGTTTGTACC+TGG + chr1.1:59589706-59589725 None:intergenic 40.0%
!! TTAGGCCACGTCTTTTTCAT+AGG + chr1.1:59590381-59590400 None:intergenic 40.0%
!! TTCTTCTCTGGAATTCCTGT+AGG + chr1.1:59590155-59590174 None:intergenic 40.0%
!!! ACATTTTTTTCCCTGCCTAC+AGG - chr1.1:59590137-59590156 MS.gene005086:CDS 40.0%
ACAAAGGCCTCATGAAGTTC+TGG + chr1.1:59589389-59589408 None:intergenic 45.0%
ACGTTATCAGGCTGTTCAGA+AGG + chr1.1:59588491-59588510 None:intergenic 45.0%
ACTTCAGACAACATGCCAGA+AGG - chr1.1:59590897-59590916 MS.gene005086:CDS 45.0%
AGAACTTCATGAGGCCTTTG+TGG - chr1.1:59589388-59589407 MS.gene005086:intron 45.0%
ATACAGGGCAAGAGGAAAGA+GGG + chr1.1:59589127-59589146 None:intergenic 45.0%
ATACTGCTGCTGTGAAACCT+GGG + chr1.1:59589276-59589295 None:intergenic 45.0%
CACGATCCTCAACCATATAG+AGG + chr1.1:59588905-59588924 None:intergenic 45.0%
CGTTATCAGGCTGTTCAGAA+GGG + chr1.1:59588490-59588509 None:intergenic 45.0%
CTCTATATGGTTGAGGATCG+TGG - chr1.1:59588903-59588922 MS.gene005086:CDS 45.0%
CTCTTGCATCAAGAGAGAAG+GGG + chr1.1:59589252-59589271 None:intergenic 45.0%
CTGATTGACTGCTTCCACAA+AGG + chr1.1:59589405-59589424 None:intergenic 45.0%
GAAAGTGACGTTATGTCCTG+GGG - chr1.1:59588557-59588576 MS.gene005086:CDS 45.0%
GATAGTGCCACACTTGATAG+TGG + chr1.1:59590813-59590832 None:intergenic 45.0%
GGAGATGATGCTAAAGCTAC+CGG - chr1.1:59590951-59590970 MS.gene005086:CDS 45.0%
GGGTGGAAATGCCAAAACAA+CGG - chr1.1:59588667-59588686 MS.gene005086:CDS 45.0%
GTCTCTTGCATCAAGAGAGA+AGG + chr1.1:59589254-59589273 None:intergenic 45.0%
GTGTCCAACACTTCTGATGT+TGG + chr1.1:59588456-59588475 None:intergenic 45.0%
GTTATCAGGCTGTTCAGAAG+GGG + chr1.1:59588489-59588508 None:intergenic 45.0%
TATACTGCTGCTGTGAAACC+TGG + chr1.1:59589277-59589296 None:intergenic 45.0%
TCATCTGTAGATGCTTCCCT+TGG + chr1.1:59590752-59590771 None:intergenic 45.0%
TCATGTGAAAAGCCATCTGC+AGG - chr1.1:59589579-59589598 MS.gene005086:intron 45.0%
TGTGGTTGTATAGGCCTAAG+GGG - chr1.1:59590498-59590517 MS.gene005086:intron 45.0%
TTCAAATGGATCAGTTCCCC+AGG + chr1.1:59588576-59588595 None:intergenic 45.0%
TTCTGCTCCACTATCAAGTG+TGG - chr1.1:59590803-59590822 MS.gene005086:CDS 45.0%
TTCTGGGTGGGAACATTATC+AGG + chr1.1:59588614-59588633 None:intergenic 45.0%
TTGGACTCCAGAACTTCATG+AGG - chr1.1:59589379-59589398 MS.gene005086:intron 45.0%
! GTATTCTGGGAACTTCCTTC+TGG + chr1.1:59590915-59590934 None:intergenic 45.0%
! GTCAGTCTTCACTCGTTTTG+TGG + chr1.1:59591015-59591034 None:intergenic 45.0%
! TCTAGAGACGCTTTGGATTG+TGG - chr1.1:59590480-59590499 MS.gene005086:intron 45.0%
!! AATGGTTCTGAAGTCTTGGG+TGG - chr1.1:59588650-59588669 MS.gene005086:CDS 45.0%
!! ACACTTGATAGTGGAGCAGA+AGG + chr1.1:59590804-59590823 None:intergenic 45.0%
!! AGGGGATTACAGAAGCATTG+CGG - chr1.1:59590516-59590535 MS.gene005086:intron 45.0%
!!! AATTAATTATTTTAATGAAT+AGG - chr1.1:59589214-59589233 MS.gene005086:intron 5.0%
!!! TATTTAATTTTTCTTTTTAT+AGG - chr1.1:59589866-59589885 MS.gene005086:CDS 5.0%
AAGGATCGGGGTTCAAACTC+CGG + chr1.1:59589932-59589951 None:intergenic 50.0%
AATTGATGCAGCCTGCATCG+AGG + chr1.1:59588429-59588448 None:intergenic 50.0%
CATACAGGGCAAGAGGAAAG+AGG + chr1.1:59589128-59589147 None:intergenic 50.0%
GAAGCAGTCAATCAGCTTGG+TGG - chr1.1:59589410-59589429 MS.gene005086:intron 50.0%
GCGGCTTCATGAACAACTTG+AGG - chr1.1:59590559-59590578 MS.gene005086:intron 50.0%
GTGGAAGCAGTCAATCAGCT+TGG - chr1.1:59589407-59589426 MS.gene005086:intron 50.0%
GTTGTTCATGAAGCCGCTTC+TGG + chr1.1:59590556-59590575 None:intergenic 50.0%
TATTCCCTCTTCCTCGATGC+AGG - chr1.1:59588415-59588434 MS.gene005086:CDS 50.0%
TCCACATGGTCATTCTGGGT+GGG + chr1.1:59588626-59588645 None:intergenic 50.0%
TCTCTTGATGCAAGAGACCC+AGG - chr1.1:59589256-59589275 MS.gene005086:CDS 50.0%
TGCAGATGGAACTCCAGAAG+CGG - chr1.1:59590540-59590559 MS.gene005086:intron 50.0%
TTCCACATGGTCATTCTGGG+TGG + chr1.1:59588627-59588646 None:intergenic 50.0%
TTCTCCCAGCTCAAGTTCAC+CGG + chr1.1:59590973-59590992 None:intergenic 50.0%
! GTCTTCACTCGTTTTGTGGG+TGG + chr1.1:59591011-59591030 None:intergenic 50.0%
! TCTGGAGTCCAACGCATTCT+AGG + chr1.1:59589371-59589390 None:intergenic 50.0%
!! CTCTGGAATTCCTGTAGGCA+GGG + chr1.1:59590150-59590169 None:intergenic 50.0%
!! TCTCTGGAATTCCTGTAGGC+AGG + chr1.1:59590151-59590170 None:intergenic 50.0%
AGCTACCGGTGAACTTGAGC+TGG - chr1.1:59590965-59590984 MS.gene005086:CDS 55.0%
GCTACCGGTGAACTTGAGCT+GGG - chr1.1:59590966-59590985 MS.gene005086:CDS 55.0%
TCCCACCCAGAATGACCATG+TGG - chr1.1:59588622-59588641 MS.gene005086:CDS 55.0%
TTGTGGGTGGTGCGGTAAGT+TGG + chr1.1:59590998-59591017 None:intergenic 55.0%
! CACTCGTTTTGTGGGTGGTG+CGG + chr1.1:59591006-59591025 None:intergenic 55.0%
!! AGAAGCATTGCGGCTGCAGA+TGG - chr1.1:59590526-59590545 MS.gene005086:intron 55.0%
!! GAGCGCCGCATGATTTGCTT+TGG - chr1.1:59589024-59589043 MS.gene005086:intron 55.0%
GCAGCCTGCATCGAGGAAGA+GGG + chr1.1:59588422-59588441 None:intergenic 60.0%
TGCAGCCTGCATCGAGGAAG+AGG + chr1.1:59588423-59588442 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 59588404 59591040 59588404 ID=MS.gene005086
chr1.1 mRNA 59588404 59591040 59588404 ID=MS.gene005086.t1;Parent=MS.gene005086
chr1.1 exon 59590648 59591040 59590648 ID=MS.gene005086.t1.exon1;Parent=MS.gene005086.t1
chr1.1 CDS 59590648 59591040 59590648 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59590004 59590208 59590004 ID=MS.gene005086.t1.exon2;Parent=MS.gene005086.t1
chr1.1 CDS 59590004 59590208 59590004 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59589844 59589920 59589844 ID=MS.gene005086.t1.exon3;Parent=MS.gene005086.t1
chr1.1 CDS 59589844 59589920 59589844 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59589715 59589754 59589715 ID=MS.gene005086.t1.exon4;Parent=MS.gene005086.t1
chr1.1 CDS 59589715 59589754 59589715 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59589228 59589285 59589228 ID=MS.gene005086.t1.exon5;Parent=MS.gene005086.t1
chr1.1 CDS 59589228 59589285 59589228 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59588864 59588933 59588864 ID=MS.gene005086.t1.exon6;Parent=MS.gene005086.t1
chr1.1 CDS 59588864 59588933 59588864 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
chr1.1 exon 59588404 59588727 59588404 ID=MS.gene005086.t1.exon7;Parent=MS.gene005086.t1
chr1.1 CDS 59588404 59588727 59588404 ID=cds.MS.gene005086.t1;Parent=MS.gene005086.t1
Gene Sequence

>MS.gene005086

ATGTCTTCGTCTATTCCCTCTTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCCCTTCTGAACAGCCTGATAACGTCCATTTTTCCTCTGCTTCAGAAATACATTCTATGACATTCCCTCAAGAAAGTGACGTTATGTCCTGGGGAACTGATCCATTTGAAGATATTCTTCAATTTCCTGATAATGTTCCCACCCAGAATGACCATGTGGAATACAATGGTTCTGAAGTCTTGGGTGGAAATGCCAAAACAACGGATTTCAAGGAGTGGGTTGATCAGTTGATGTCAGTCGATGATGATTCTATTCAGCCAAATTGGAATGAACTTCTCGGTGATAACAATATGACAGAACCAAAATCACAGGTTTGTTTTTTTAAACTGATTTTAATATTGTACTACAAGGTCTCAAAGTGCTTGCTCCTATCTGTGAATAATACTAGAATATGTGGATGGCATTGGCATCTTGTTCCTCTATATGGTTGAGGATCGTGGTTATTTATTATGACCGACTAGTTTATGATGCACATGAAAATCAGGTCAAGTGGTATGGTATGATTATCTGTAATGTAACTAGCTAGTTGTGGGAAACTGAGCGCCGCATGATTTGCTTTGGTGCATTTAGGTTCTTTTTTTAAGAAAAAAAAAATTGATTCATCAATCATTGCCATCTGCATGTAAGTATAGTATGCTCCCTCTTTCCTCTTGCCCTGTATGTATCTTAACCGTTTGAGACCTACTGTTATTTTTCGCTTAACTCTTTGTCTATATAACTTCTTTTTTAATTAATTATTTTAATGAATAGGATGCACAAATGTCCCCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACAGCAGCAGTATATACCATCACTACCATCCAAAGAAGTTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCGCAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAGTATGTTCACTTCTCCTTTATTTTGTACTTCTTATCCTTCTCATTACAGATTTTCCTTATTATCTCATGGTGTTAATATGTAGAGGCTACTCCTAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGGTACATTTTTTTTTCTTTACTTAGGAGCTTCTTTATGGGTGTGTTTTAATCGAAGGTTTTTAATGAATTATTTGTTCCCTTAATTTCAGAAATATAGAACTGCCAGGTACAAACCAGAATCATCAGAAGGTATGTGCAAGTTTATACGGAGGTTTAATGTTCATATAAAGTTCATATAAACCAGGTTGCTTATTATTTATATCTGTGGTTTAGTGCTTCTTCACTCATCACCCGTAATGTCTCCAGTAAGATGTTTTGTTTGTGATATTTAATTTTTCTTTTTATAGGCAAATACGGTAAATTAGTTATGTTAAAATTTTGTCATTCACCGGAGTTTGAACCCCGATCCTTCAACTCCTTTAACATTGGGATAGGCAAACCAGTTGTTATGTATTTCCGTTTTTCAATGTTCATGCTTCTGTGACTGTATCTGTTCAAATTTATTTCTCCTGTTCTCTTTAGGGTTTAATAAGCACATACATAATTGGATATGCACCAATTTGTTTTGGATGAATCAAAGAATAGTGGTCTGAATGACATTTTTTTCCCTGCCTACAGGAATTCCAGAGAAGAAGTTGACTTCAATCGACGAAATGCCGTCTATAGACTTAAAAACGTGAGTCCCATCCCCTACTTATCTATAATTGTTTTTCTTATTGTATTGATTGATCTTTTTGACCAACAATGACATCTCTCAATTGTATGCATAGAGCTAAGTGTAAATGTCTAAAGTTCATTTGAAATAACTTTTGTCGTATATTTGAATTTAAGATATAACCTATGAAAAAGACGTGGCCTAAAAACTGAGCCGAACAGATCTAGTGTTTACTATTATATGATACCTATTGTCCTCGTTTCCAATATGTACAGTTATTAATGTCTAGAGACGCTTTGGATTGTGGTTGTATAGGCCTAAGGGGATTACAGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGGTATATCTTAGTTGCTAAATCCACTGTGTTTTCTGTGTGATCTTTGTGTGAAGGAGTGTTGTTTAACTCCCCATATTTTGTAAGGAAGATGACCTTGTGCTCTGTTATTATAACTATAATAATAACTATTATGCAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATGAAGTCGGATGAGCCTTCTGCTCCACTATCAAGTGTGGCACTATCTTCTCCAGTTGAAAATTTAGAAAACACAAATGAAGGTCACGAAAAAATTGGAATCAATGACAGCACTTCAGACAACATGCCAGAAGGAAGTTCCCAGAATACAAGCACAGAGCAAAAGGGAGATGATGCTAAAGCTACCGGTGAACTTGAGCTGGGAGAAGACCAACTTACCGCACCACCCACAAAACGAGTGAAGACTGACAAGTAG
Protein sequence

>MS.gene005086.t1

MSSSIPSSSMQAASINSNIRSVGHMFSTPSEQPDNVHFSSASEIHSMTFPQESDVMSWGTDPFEDILQFPDNVPTQNDHVEYNGSEVLGGNAKTTDFKEWVDQLMSVDDDSIQPNWNELLGDNNMTEPKSQDAQMSPSLLMQETQVSQQQYIPSLPSKEVNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIDEMPSIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQMKSDEPSAPLSSVALSSPVENLENTNEGHEKIGINDSTSDNMPEGSSQNTSTEQKGDDAKATGELELGEDQLTAPPTKRVKTDK