Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005102.t1 | XP_024632961.1 | 84.4 | 793 | 96 | 4 | 1 | 765 | 1 | 793 | 0.00E+00 | 1333.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005102.t1 | Q9SZL8 | 27.2 | 636 | 393 | 11 | 32 | 665 | 70 | 637 | 9.6e-64 | 246.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005102.t1 | D3YBB9 | 76.4 | 774 | 163 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1182.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005102.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005102.t1 | MTR_0558s0020 | 86.824 | 296 | 38 | 1 | 1 | 295 | 1 | 296 | 0.0 | 545 |
| MS.gene005102.t1 | MTR_1g083640 | 82.746 | 284 | 33 | 1 | 1 | 268 | 1 | 284 | 6.28e-172 | 495 |
| MS.gene005102.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 4.61e-153 | 446 |
| MS.gene005102.t1 | MTR_2g014100 | 81.633 | 245 | 36 | 1 | 1 | 236 | 1 | 245 | 2.86e-141 | 416 |
| MS.gene005102.t1 | MTR_6g090505 | 82.700 | 237 | 41 | 0 | 65 | 301 | 1 | 237 | 5.28e-141 | 419 |
| MS.gene005102.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 396 | 495 | 230 | 306 | 1.44e-33 | 133 |
| MS.gene005102.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 2.80e-11 | 66.2 |
| MS.gene005102.t1 | MTR_0337s0040 | 71.923 | 260 | 33 | 2 | 1 | 259 | 1 | 221 | 1.07e-123 | 369 |
| MS.gene005102.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 1.72e-117 | 352 |
| MS.gene005102.t1 | MTR_4g040430 | 83.168 | 202 | 30 | 1 | 1 | 202 | 1 | 198 | 6.15e-117 | 351 |
| MS.gene005102.t1 | MTR_0337s0060 | 59.177 | 316 | 29 | 4 | 447 | 759 | 21 | 239 | 9.50e-110 | 334 |
| MS.gene005102.t1 | MTR_5g071590 | 73.333 | 180 | 35 | 2 | 1 | 167 | 1 | 180 | 2.33e-89 | 279 |
| MS.gene005102.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 91 | 232 | 3 | 144 | 1.32e-86 | 270 |
| MS.gene005102.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 82 | 233 | 9 | 160 | 7.42e-86 | 269 |
| MS.gene005102.t1 | MTR_3g028680 | 81.457 | 151 | 25 | 1 | 618 | 765 | 1 | 151 | 1.01e-80 | 256 |
| MS.gene005102.t1 | MTR_2g067090 | 78.378 | 148 | 29 | 1 | 621 | 765 | 99 | 246 | 1.09e-71 | 236 |
| MS.gene005102.t1 | MTR_4g133495 | 62.983 | 181 | 41 | 2 | 576 | 753 | 88 | 245 | 2.65e-67 | 224 |
| MS.gene005102.t1 | MTR_4g133340 | 62.983 | 181 | 41 | 2 | 576 | 753 | 88 | 245 | 2.65e-67 | 224 |
| MS.gene005102.t1 | MTR_1281s0010 | 80.734 | 109 | 21 | 0 | 19 | 127 | 1 | 109 | 2.00e-56 | 188 |
| MS.gene005102.t1 | MTR_6g051425 | 32.317 | 328 | 189 | 7 | 40 | 351 | 22 | 332 | 1.85e-40 | 152 |
| MS.gene005102.t1 | MTR_4g008820 | 70.000 | 100 | 29 | 1 | 1 | 99 | 125 | 224 | 1.46e-31 | 131 |
| MS.gene005102.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.39e-31 | 122 |
| MS.gene005102.t1 | MTR_1g070355 | 26.543 | 324 | 217 | 6 | 41 | 362 | 80 | 384 | 1.28e-19 | 94.0 |
| MS.gene005102.t1 | MTR_2g067130 | 62.162 | 74 | 22 | 2 | 695 | 765 | 46 | 116 | 2.33e-18 | 83.2 |
| MS.gene005102.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.36e-14 | 77.0 |
| MS.gene005102.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 4.75e-13 | 65.5 |
| MS.gene005102.t1 | MTR_4g035820 | 22.069 | 290 | 193 | 7 | 17 | 299 | 61 | 324 | 9.60e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005102.t1 | AT4G38180 | 27.925 | 641 | 382 | 13 | 32 | 665 | 70 | 637 | 8.99e-71 | 248 |
| MS.gene005102.t1 | AT4G15090 | 24.793 | 726 | 442 | 17 | 50 | 753 | 66 | 709 | 7.59e-59 | 214 |
| MS.gene005102.t1 | AT4G15090 | 24.793 | 726 | 442 | 17 | 50 | 753 | 66 | 709 | 7.59e-59 | 214 |
| MS.gene005102.t1 | AT4G15090 | 24.793 | 726 | 442 | 17 | 50 | 753 | 66 | 709 | 7.59e-59 | 214 |
| MS.gene005102.t1 | AT4G15090 | 24.793 | 726 | 442 | 17 | 50 | 753 | 66 | 709 | 7.59e-59 | 214 |
| MS.gene005102.t1 | AT4G15090 | 24.793 | 726 | 442 | 17 | 50 | 753 | 66 | 709 | 7.59e-59 | 214 |
| MS.gene005102.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 1.71e-51 | 193 |
| MS.gene005102.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 1.71e-51 | 193 |
| MS.gene005102.t1 | AT2G27110 | 26.384 | 542 | 328 | 13 | 180 | 719 | 17 | 489 | 9.55e-51 | 189 |
| MS.gene005102.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 4.82e-49 | 185 |
| MS.gene005102.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 4.82e-49 | 185 |
| MS.gene005102.t1 | AT3G06250 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 4.82e-49 | 185 |
| MS.gene005102.t1 | AT1G76320 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 1.09e-48 | 183 |
| MS.gene005102.t1 | AT1G76320 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 3.36e-48 | 182 |
| MS.gene005102.t1 | AT1G76320 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 3.36e-48 | 182 |
| MS.gene005102.t1 | AT1G76320 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 4.38e-48 | 182 |
| MS.gene005102.t1 | AT3G22170 | 23.021 | 682 | 427 | 16 | 34 | 708 | 69 | 659 | 2.02e-47 | 181 |
| MS.gene005102.t1 | AT3G22170 | 23.021 | 682 | 427 | 16 | 34 | 708 | 69 | 659 | 2.02e-47 | 181 |
| MS.gene005102.t1 | AT5G18960 | 24.111 | 647 | 363 | 18 | 24 | 661 | 200 | 727 | 3.13e-43 | 168 |
| MS.gene005102.t1 | AT5G18960 | 24.111 | 647 | 363 | 18 | 24 | 661 | 200 | 727 | 3.13e-43 | 168 |
| MS.gene005102.t1 | AT1G10240 | 24.642 | 629 | 370 | 19 | 49 | 659 | 62 | 604 | 3.29e-43 | 167 |
| MS.gene005102.t1 | AT1G10240 | 24.642 | 629 | 370 | 19 | 49 | 659 | 62 | 604 | 3.29e-43 | 167 |
| MS.gene005102.t1 | AT5G28530 | 24.257 | 639 | 387 | 17 | 40 | 660 | 60 | 619 | 1.89e-42 | 165 |
| MS.gene005102.t1 | AT4G38170 | 24.594 | 431 | 267 | 11 | 235 | 662 | 24 | 399 | 2.88e-42 | 162 |
| MS.gene005102.t1 | AT5G28530 | 24.100 | 639 | 384 | 18 | 40 | 660 | 60 | 615 | 1.21e-41 | 162 |
| MS.gene005102.t1 | AT5G28530 | 24.100 | 639 | 384 | 18 | 40 | 660 | 60 | 615 | 1.21e-41 | 162 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 6.03e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 6.43e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 6.43e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 7.04e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 7.04e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.059 | 744 | 430 | 21 | 4 | 743 | 10 | 622 | 7.04e-40 | 158 |
| MS.gene005102.t1 | AT2G32250 | 24.069 | 698 | 398 | 19 | 50 | 743 | 12 | 581 | 4.98e-39 | 155 |
| MS.gene005102.t1 | AT2G32250 | 24.069 | 698 | 398 | 19 | 50 | 743 | 12 | 581 | 5.17e-39 | 155 |
| MS.gene005102.t1 | AT1G80010 | 24.196 | 653 | 372 | 23 | 41 | 662 | 101 | 661 | 4.26e-38 | 152 |
| MS.gene005102.t1 | AT1G52520 | 21.760 | 625 | 409 | 16 | 41 | 662 | 91 | 638 | 9.10e-33 | 135 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 106 | 369 | 9.82e-28 | 120 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 438 | 558 | 3.40e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 163 | 426 | 1.00e-27 | 120 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 3.39e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 163 | 426 | 1.00e-27 | 120 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 3.39e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 163 | 426 | 1.10e-27 | 120 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 3.73e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 177 | 440 | 1.14e-27 | 120 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 509 | 629 | 3.80e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 163 | 426 | 1.35e-27 | 119 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 3.70e-12 | 70.5 |
| MS.gene005102.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 219 | 483 | 163 | 426 | 1.35e-27 | 119 |
| MS.gene005102.t1 | AT4G19990 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 3.70e-12 | 70.5 |
| MS.gene005102.t1 | AT5G28530 | 21.781 | 629 | 352 | 21 | 40 | 660 | 60 | 556 | 2.06e-22 | 102 |
| MS.gene005102.t1 | AT5G28530 | 21.622 | 629 | 349 | 22 | 40 | 660 | 60 | 552 | 1.61e-21 | 100 |
Find 112 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1.1:+59809938 | MS.gene005102:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 1.1:+59809629 | MS.gene005102:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 1.1:-59810764 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1.1:+59809896 | MS.gene005102:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 1.1:+59808845 | MS.gene005102:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 1.1:+59809348 | MS.gene005102:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 1.1:+59809381 | MS.gene005102:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 1.1:-59809475 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 1.1:-59810758 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 1.1:+59809670 | MS.gene005102:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 1.1:+59810610 | MS.gene005102:CDS |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 1.1:+59810193 | MS.gene005102:CDS |
| ACTAGCGTGGTCTGTGTATA+TGG | 0.364786 | 1.1:-59809493 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 1.1:+59809770 | MS.gene005102:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 1.1:+59810602 | MS.gene005102:CDS |
| GCAGATATTTATTGTTTGTT+CGG | 0.386640 | 1.1:-59808895 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 1.1:+59809769 | MS.gene005102:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 1.1:-59810486 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 1.1:-59808365 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 1.1:+59810750 | MS.gene005102:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1.1:-59810740 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1.1:+59810070 | MS.gene005102:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 1.1:+59810635 | MS.gene005102:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 1.1:+59808136 | MS.gene005102:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 1.1:+59810318 | MS.gene005102:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 1.1:-59810241 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 1.1:+59808207 | MS.gene005102:CDS |
| GGGTTGCCACAGTCGACATT+AGG | 0.419786 | 1.1:+59810276 | MS.gene005102:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 1.1:-59810242 | None:intergenic |
| AACAATAAATATCTGCCATT+AGG | 0.426172 | 1.1:+59808902 | MS.gene005102:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1.1:+59808542 | MS.gene005102:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 1.1:+59808424 | MS.gene005102:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1.1:+59808407 | MS.gene005102:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 1.1:-59810419 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 1.1:+59808290 | MS.gene005102:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 1.1:+59808572 | MS.gene005102:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 1.1:+59808061 | MS.gene005102:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 1.1:+59809560 | MS.gene005102:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 1.1:+59810319 | MS.gene005102:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 1.1:+59808256 | MS.gene005102:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1.1:-59810072 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 1.1:-59808401 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 1.1:+59808194 | MS.gene005102:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 1.1:+59808685 | MS.gene005102:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 1.1:-59808512 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 1.1:+59808250 | MS.gene005102:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1.1:+59810086 | MS.gene005102:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 1.1:-59809361 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 1.1:+59810711 | MS.gene005102:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 1.1:+59809671 | MS.gene005102:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 1.1:+59808698 | MS.gene005102:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1.1:+59809910 | MS.gene005102:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 1.1:-59809990 | None:intergenic |
| GAAGCGATGGGTCAAGGAGT+TGG | 0.502080 | 1.1:+59808617 | MS.gene005102:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 1.1:-59808790 | None:intergenic |
| TGGTCTGTGTATATGGTTTG+AGG | 0.503729 | 1.1:-59809486 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 1.1:-59808500 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 1.1:+59809757 | MS.gene005102:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 1.1:+59810255 | MS.gene005102:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 1.1:-59808656 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1.1:+59809929 | MS.gene005102:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 1.1:+59809775 | MS.gene005102:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 1.1:+59808460 | MS.gene005102:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 1.1:-59810235 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 1.1:-59809878 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 1.1:+59810256 | MS.gene005102:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1.1:-59810067 | None:intergenic |
| GAGAACATCTTATGAAGCGA+TGG | 0.538371 | 1.1:+59808604 | MS.gene005102:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 1.1:+59808301 | MS.gene005102:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 1.1:-59809873 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1.1:+59810087 | MS.gene005102:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1.1:+59808302 | MS.gene005102:CDS |
| TCTTATGAAGCGATGGGTCA+AGG | 0.545849 | 1.1:+59808611 | MS.gene005102:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 1.1:+59808126 | MS.gene005102:CDS |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 1.1:+59810476 | MS.gene005102:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 1.1:+59808752 | MS.gene005102:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 1.1:+59808085 | MS.gene005102:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 1.1:+59810710 | MS.gene005102:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 1.1:+59810562 | MS.gene005102:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 1.1:+59808459 | MS.gene005102:CDS |
| GCGATGGGTCAAGGAGTTGG+AGG | 0.575794 | 1.1:+59808620 | MS.gene005102:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 1.1:-59809991 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 1.1:-59810722 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 1.1:-59810012 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 1.1:+59808050 | MS.gene005102:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 1.1:+59810603 | MS.gene005102:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 1.1:+59810598 | MS.gene005102:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 1.1:+59810225 | MS.gene005102:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 1.1:-59810678 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 1.1:+59808691 | MS.gene005102:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 1.1:-59810510 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 1.1:+59808694 | MS.gene005102:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 1.1:+59810565 | MS.gene005102:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 1.1:+59809988 | MS.gene005102:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1.1:+59810073 | MS.gene005102:CDS |
| AGCAACTTAAAGTCCGAAGT+AGG | 0.613242 | 1.1:-59809726 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 1.1:-59808350 | None:intergenic |
| AGAACATCTTATGAAGCGAT+GGG | 0.621635 | 1.1:+59808605 | MS.gene005102:CDS |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.624321 | 1.1:+59808625 | MS.gene005102:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 1.1:-59810240 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 1.1:+59809561 | MS.gene005102:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 1.1:-59810483 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1.1:+59809911 | MS.gene005102:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 1.1:-59810461 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 1.1:-59810032 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 1.1:+59810587 | MS.gene005102:CDS |
| ACTTCAACAACGCACTAGCG+TGG | 0.663109 | 1.1:-59809506 | None:intergenic |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 1.1:-59810337 | None:intergenic |
| TTTGCTCCTAATGTCGACTG+TGG | 0.666563 | 1.1:-59810282 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 1.1:+59810320 | MS.gene005102:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 1.1:+59810171 | MS.gene005102:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 1.1:+59810172 | MS.gene005102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr1.1:59808459-59808478 | MS.gene005102:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr1.1:59808250-59808269 | MS.gene005102:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr1.1:59808460-59808479 | MS.gene005102:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr1.1:59808194-59808213 | MS.gene005102:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr1.1:59809077-59809096 | MS.gene005102:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr1.1:59809699-59809718 | MS.gene005102:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr1.1:59809049-59809068 | MS.gene005102:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr1.1:59809537-59809556 | None:intergenic | 25.0% |
| ! | AACAATAAATATCTGCCATT+AGG | + | chr1.1:59808902-59808921 | MS.gene005102:CDS | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr1.1:59808256-59808275 | MS.gene005102:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr1.1:59808920-59808939 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr1.1:59810070-59810089 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr1.1:59808126-59808145 | MS.gene005102:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr1.1:59809896-59809915 | MS.gene005102:CDS | 25.0% |
| ! | GCAGATATTTATTGTTTGTT+CGG | - | chr1.1:59808898-59808917 | None:intergenic | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr1.1:59808085-59808104 | MS.gene005102:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr1.1:59808967-59808986 | MS.gene005102:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr1.1:59810035-59810054 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr1.1:59810070-59810089 | MS.gene005102:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr1.1:59809629-59809648 | MS.gene005102:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr1.1:59809069-59809088 | MS.gene005102:intron | 25.0% |
| !! | CAAAGTTTTCACAATTGAAA+AGG | + | chr1.1:59810130-59810149 | MS.gene005102:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr1.1:59809325-59809344 | MS.gene005102:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr1.1:59810171-59810190 | MS.gene005102:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr1.1:59808246-59808265 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr1.1:59809076-59809095 | MS.gene005102:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr1.1:59808572-59808591 | MS.gene005102:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr1.1:59809703-59809722 | MS.gene005102:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr1.1:59810172-59810191 | MS.gene005102:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr1.1:59809140-59809159 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr1.1:59808302-59808321 | MS.gene005102:CDS | 30.0% | |
| AAGAAAGACCAAATCCAATT+AGG | + | chr1.1:59810750-59810769 | MS.gene005102:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr1.1:59809670-59809689 | MS.gene005102:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | + | chr1.1:59808050-59808069 | MS.gene005102:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr1.1:59809671-59809690 | MS.gene005102:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr1.1:59809364-59809383 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr1.1:59810243-59810262 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr1.1:59808845-59808864 | MS.gene005102:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr1.1:59810075-59810094 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr1.1:59809006-59809025 | MS.gene005102:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr1.1:59810073-59810092 | MS.gene005102:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr1.1:59809585-59809604 | MS.gene005102:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr1.1:59810244-59810263 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr1.1:59808391-59808410 | MS.gene005102:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr1.1:59808136-59808155 | MS.gene005102:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr1.1:59809881-59809900 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr1.1:59808301-59808320 | MS.gene005102:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr1.1:59808773-59808792 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr1.1:59810015-59810034 | None:intergenic | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr1.1:59810761-59810780 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr1.1:59808659-59808678 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr1.1:59809284-59809303 | MS.gene005102:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr1.1:59808503-59808522 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr1.1:59808424-59808443 | MS.gene005102:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr1.1:59808649-59808668 | MS.gene005102:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr1.1:59810587-59810606 | MS.gene005102:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr1.1:59809478-59809497 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr1.1:59809528-59809547 | MS.gene005102:CDS | 30.0% |
| ! | TGAGGCTTTAACAATTTAAG+CGG | + | chr1.1:59810859-59810878 | MS.gene005102:intron | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr1.1:59810743-59810762 | None:intergenic | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr1.1:59810355-59810374 | MS.gene005102:CDS | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr1.1:59810255-59810274 | MS.gene005102:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr1.1:59808981-59809000 | MS.gene005102:intron | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr1.1:59810635-59810654 | MS.gene005102:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr1.1:59810256-59810275 | MS.gene005102:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr1.1:59810352-59810371 | MS.gene005102:CDS | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr1.1:59808807-59808826 | MS.gene005102:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr1.1:59808808-59808827 | MS.gene005102:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr1.1:59810420-59810439 | MS.gene005102:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr1.1:59809540-59809559 | MS.gene005102:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr1.1:59809910-59809929 | MS.gene005102:CDS | 35.0% | |
| AGAACATCTTATGAAGCGAT+GGG | + | chr1.1:59808605-59808624 | MS.gene005102:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr1.1:59808207-59808226 | MS.gene005102:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr1.1:59809107-59809126 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr1.1:59809911-59809930 | MS.gene005102:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr1.1:59808542-59808561 | MS.gene005102:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr1.1:59810245-59810264 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr1.1:59808290-59808309 | MS.gene005102:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr1.1:59808390-59808409 | MS.gene005102:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr1.1:59809757-59809776 | MS.gene005102:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr1.1:59808385-59808404 | MS.gene005102:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr1.1:59810841-59810860 | MS.gene005102:intron | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | + | chr1.1:59810816-59810835 | MS.gene005102:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr1.1:59808327-59808346 | MS.gene005102:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr1.1:59808685-59808704 | MS.gene005102:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr1.1:59809116-59809135 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr1.1:59808368-59808387 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr1.1:59809381-59809400 | MS.gene005102:CDS | 35.0% |
| ! | GAGGCTTTAACAATTTAAGC+GGG | + | chr1.1:59810860-59810879 | MS.gene005102:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr1.1:59810193-59810212 | MS.gene005102:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr1.1:59809840-59809859 | MS.gene005102:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr1.1:59808987-59809006 | MS.gene005102:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr1.1:59809713-59809732 | MS.gene005102:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr1.1:59809553-59809572 | MS.gene005102:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr1.1:59810689-59810708 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr1.1:59810422-59810441 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr1.1:59809770-59809789 | MS.gene005102:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr1.1:59810362-59810381 | MS.gene005102:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr1.1:59809424-59809443 | MS.gene005102:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr1.1:59810423-59810442 | MS.gene005102:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr1.1:59809876-59809895 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr1.1:59809234-59809253 | None:intergenic | 40.0% | |
| AGCAACTTAAAGTCCGAAGT+AGG | - | chr1.1:59809729-59809748 | None:intergenic | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr1.1:59810767-59810786 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr1.1:59808061-59808080 | MS.gene005102:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr1.1:59810087-59810106 | MS.gene005102:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr1.1:59810319-59810338 | MS.gene005102:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr1.1:59809120-59809139 | MS.gene005102:intron | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr1.1:59810598-59810617 | MS.gene005102:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr1.1:59810318-59810337 | MS.gene005102:CDS | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | + | chr1.1:59810476-59810495 | MS.gene005102:CDS | 40.0% | |
| CTGTCTATGAACCATCTGTT+GGG | + | chr1.1:59810711-59810730 | MS.gene005102:CDS | 40.0% | |
| GAGAACATCTTATGAAGCGA+TGG | + | chr1.1:59808604-59808623 | MS.gene005102:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr1.1:59810464-59810483 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr1.1:59810489-59810508 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr1.1:59810086-59810105 | MS.gene005102:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr1.1:59809230-59809249 | MS.gene005102:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr1.1:59808819-59808838 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr1.1:59809489-59809508 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr1.1:59809348-59809367 | MS.gene005102:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr1.1:59810225-59810244 | MS.gene005102:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr1.1:59810513-59810532 | None:intergenic | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | - | chr1.1:59810486-59810505 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr1.1:59810829-59810848 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr1.1:59809938-59809957 | MS.gene005102:CDS | 40.0% |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr1.1:59810681-59810700 | None:intergenic | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr1.1:59810365-59810384 | MS.gene005102:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr1.1:59809769-59809788 | MS.gene005102:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr1.1:59808341-59808360 | None:intergenic | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr1.1:59808694-59808713 | MS.gene005102:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr1.1:59808752-59808771 | MS.gene005102:CDS | 45.0% | |
| ACTAGCGTGGTCTGTGTATA+TGG | - | chr1.1:59809496-59809515 | None:intergenic | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr1.1:59808353-59808372 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr1.1:59809988-59810007 | MS.gene005102:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr1.1:59810340-59810359 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr1.1:59808515-59808534 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr1.1:59808395-59808414 | MS.gene005102:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr1.1:59808691-59808710 | MS.gene005102:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr1.1:59809929-59809948 | MS.gene005102:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr1.1:59810238-59810257 | None:intergenic | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | + | chr1.1:59810710-59810729 | MS.gene005102:CDS | 45.0% | |
| TCTTATGAAGCGATGGGTCA+AGG | + | chr1.1:59808611-59808630 | MS.gene005102:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr1.1:59810320-59810339 | MS.gene005102:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr1.1:59808793-59808812 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr1.1:59810610-59810629 | MS.gene005102:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr1.1:59808404-59808423 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr1.1:59809792-59809811 | MS.gene005102:CDS | 45.0% |
| ! | TTTGCTCCTAATGTCGACTG+TGG | - | chr1.1:59810285-59810304 | None:intergenic | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr1.1:59809775-59809794 | MS.gene005102:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr1.1:59808407-59808426 | MS.gene005102:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr1.1:59808815-59808834 | MS.gene005102:CDS | 45.0% |
| ACTTCAACAACGCACTAGCG+TGG | - | chr1.1:59809509-59809528 | None:intergenic | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr1.1:59809993-59810012 | None:intergenic | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr1.1:59809561-59809580 | MS.gene005102:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr1.1:59810562-59810581 | MS.gene005102:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr1.1:59810603-59810622 | MS.gene005102:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr1.1:59809096-59809115 | MS.gene005102:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr1.1:59809560-59809579 | MS.gene005102:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr1.1:59810725-59810744 | None:intergenic | 50.0% |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr1.1:59810602-59810621 | MS.gene005102:CDS | 55.0% | |
| GAAGCGATGGGTCAAGGAGT+TGG | + | chr1.1:59808617-59808636 | MS.gene005102:CDS | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr1.1:59809994-59810013 | None:intergenic | 55.0% | |
| GGGTTGCCACAGTCGACATT+AGG | + | chr1.1:59810276-59810295 | MS.gene005102:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr1.1:59810616-59810635 | MS.gene005102:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr1.1:59808698-59808717 | MS.gene005102:CDS | 55.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr1.1:59810565-59810584 | MS.gene005102:CDS | 60.0% | |
| GCGATGGGTCAAGGAGTTGG+AGG | + | chr1.1:59808620-59808639 | MS.gene005102:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr1.1:59808625-59808644 | MS.gene005102:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 59808041 | 59810888 | 59808041 | ID=MS.gene005102 |
| chr1.1 | mRNA | 59808041 | 59810888 | 59808041 | ID=MS.gene005102.t1;Parent=MS.gene005102 |
| chr1.1 | exon | 59808041 | 59808923 | 59808041 | ID=MS.gene005102.t1.exon1;Parent=MS.gene005102.t1 |
| chr1.1 | CDS | 59808041 | 59808923 | 59808041 | ID=cds.MS.gene005102.t1;Parent=MS.gene005102.t1 |
| chr1.1 | exon | 59809358 | 59810771 | 59809358 | ID=MS.gene005102.t1.exon2;Parent=MS.gene005102.t1 |
| chr1.1 | CDS | 59809358 | 59810771 | 59809358 | ID=cds.MS.gene005102.t1;Parent=MS.gene005102.t1 |
| chr1.1 | exon | 59810879 | 59810888 | 59810879 | ID=MS.gene005102.t1.exon3;Parent=MS.gene005102.t1 |
| chr1.1 | CDS | 59810879 | 59810888 | 59810879 | ID=cds.MS.gene005102.t1;Parent=MS.gene005102.t1 |
| Gene Sequence |
| Protein sequence |