AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005156

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005156.t1 MTR_1g081560 91.247 377 31 2 1 377 1 375 0.0 630
MS.gene005156.t1 MTR_1g081580 31.953 338 172 10 82 373 45 370 2.76e-40 147
MS.gene005156.t1 MTR_7g114600 44.444 171 76 7 73 230 42 206 1.32e-28 116
MS.gene005156.t1 MTR_7g114600 37.931 116 49 5 278 374 323 434 1.03e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005156.t1 AT5G28040 34.366 355 155 15 94 374 72 422 5.01e-43 155
MS.gene005156.t1 AT5G28040 34.366 355 155 15 94 374 72 422 5.01e-43 155
MS.gene005156.t1 AT3G04930 47.581 124 51 5 128 241 133 252 1.10e-26 110
MS.gene005156.t1 AT3G04930 47.581 124 51 5 128 241 133 252 2.83e-26 109
MS.gene005156.t1 AT1G11510 35.606 132 69 4 109 230 105 230 3.76e-13 70.5
MS.gene005156.t1 AT1G11510 39.394 99 53 2 133 230 109 201 4.56e-13 69.7

Find 96 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAATTCCACGCTGAATT+TGG 0.173148 1.1:+60443881 None:intergenic
TGCTTTCACCATTGGTTTCT+TGG 0.184831 1.1:-60444406 MS.gene005156:CDS
TCGAAATTTCCCACAAGATT+TGG 0.203495 1.1:-60443746 MS.gene005156:CDS
CGAAATTTCCCACAAGATTT+GGG 0.213735 1.1:-60443745 MS.gene005156:CDS
CTTGTGGGAAATTTCGAAAA+TGG 0.256771 1.1:+60443752 None:intergenic
AGAAGTTACGTAGGTTAAAA+AGG 0.283260 1.1:-60443842 MS.gene005156:CDS
TCAATAAGATCAGGACTTTC+AGG 0.284560 1.1:+60443672 None:intergenic
TGAACTGTTGAAGGGATATC+TGG 0.305389 1.1:-60443979 MS.gene005156:CDS
ACCATTGTTGAAGGACCTAT+TGG 0.311289 1.1:-60443475 MS.gene005156:CDS
ATGGTTAAAACGGAGGATTT+TGG 0.338805 1.1:-60443382 MS.gene005156:CDS
TGACACCGACCATGACGTTT+TGG 0.344618 1.1:-60443718 MS.gene005156:CDS
ATTGTGAAGAAACAGATAAA+AGG 0.357039 1.1:-60443617 MS.gene005156:CDS
TGGTCTTCATCCACATTGTA+TGG 0.361996 1.1:+60444218 None:intergenic
GCCATGGCCACCGTCACAAC+GGG 0.369780 1.1:+60444152 None:intergenic
GACGCACTGGGTGGCTCTAC+TGG 0.372415 1.1:+60443444 None:intergenic
CTCAACAATGCTTTCACCAT+TGG 0.374554 1.1:-60444414 None:intergenic
TATCATCCACATTGTCCATT+TGG 0.374861 1.1:+60444264 None:intergenic
CATTGTATGGACATAGAAAA+TGG 0.389529 1.1:+60444231 None:intergenic
TGGTGAGAAACAAGACTTCA+TGG 0.394662 1.1:+60443494 None:intergenic
GCCGTGTTTGTGTCATCTGC+GGG 0.417687 1.1:+60444125 None:intergenic
TTGTTTCTCACCATTGTTGA+AGG 0.430888 1.1:-60443484 MS.gene005156:CDS
TAGTAGCATTGCCATTGTTC+CGG 0.431642 1.1:+60443541 None:intergenic
TGAGGGATCTTGAAAGAAAT+CGG 0.433564 1.1:+60443783 None:intergenic
TAACAACATCGGCGACGCAC+TGG 0.453222 1.1:+60443431 None:intergenic
AGATCAGGACTTTCAGGAAC+AGG 0.454735 1.1:+60443678 None:intergenic
CAATGGGAATGTTGTCCATT+TGG 0.457011 1.1:+60444198 None:intergenic
CCCCGTTGTGACGGTGGCCA+TGG 0.457760 1.1:-60444153 MS.gene005156:CDS
TCGCCGATGTTGTTATCGAC+AGG 0.458917 1.1:-60443423 MS.gene005156:CDS
TGACAATGTTGAAGACCAAA+TGG 0.469140 1.1:-60444279 MS.gene005156:CDS
AATTCAGCGTGGAATTCAAC+AGG 0.472407 1.1:-60443878 MS.gene005156:CDS
TATTGACAATGTTAAGATGA+AGG 0.472539 1.1:-60443655 MS.gene005156:CDS
CTACTGGAACATCATCCAAT+AGG 0.479253 1.1:+60443460 None:intergenic
AGTGGTAGTAGCCGCGGTGG+TGG 0.484827 1.1:+60444091 None:intergenic
TCAGAAACGGCAAGTGCAAT+GGG 0.486716 1.1:+60444182 None:intergenic
GGACGAGATTGAACTGTTGA+AGG 0.488252 1.1:-60443988 MS.gene005156:CDS
TTGTGAAGAAACAGATAAAA+GGG 0.492865 1.1:-60443616 MS.gene005156:CDS
AAGGAAACACAAGATGACTT+TGG 0.497734 1.1:-60443823 MS.gene005156:CDS
CAATGTGGATGAAGACCAAA+TGG 0.497943 1.1:-60444213 MS.gene005156:CDS
ATCAGAAACGGCAAGTGCAA+TGG 0.502613 1.1:+60444181 None:intergenic
TTAAACAATATCAGAGGCTA+TGG 0.508336 1.1:-60444019 MS.gene005156:CDS
TCAGATCAAGGCTAGGTTGG+AGG 0.516669 1.1:-60443319 MS.gene005156:CDS
TCGAAAATGGCTTGTTCCTG+AGG 0.518443 1.1:+60443765 None:intergenic
TTAACATTGTCAATAAGATC+AGG 0.519347 1.1:+60443663 None:intergenic
GGAGGTGTATTTGAATCGGT+TGG 0.520311 1.1:-60443355 MS.gene005156:CDS
GTCATTGCCCCAAATCTTGT+GGG 0.523632 1.1:+60443737 None:intergenic
AACTGGAGGTGTATTTGAAT+CGG 0.526700 1.1:-60443359 MS.gene005156:CDS
CGAAAATGGCTTGTTCCTGA+GGG 0.533678 1.1:+60443766 None:intergenic
CAATGTGGATGATAACGAAA+AGG 0.535070 1.1:-60444255 MS.gene005156:CDS
GATTTCTTTCAAGATCCCTC+AGG 0.542535 1.1:-60443781 MS.gene005156:CDS
TGTCATTGCCCCAAATCTTG+TGG 0.546121 1.1:+60443736 None:intergenic
AATCGGTTGGAGTTGTTGCA+AGG 0.547050 1.1:-60443342 MS.gene005156:CDS
AACAACATCGGCGACGCACT+GGG 0.551267 1.1:+60443432 None:intergenic
TCCAATAGGTCCTTCAACAA+TGG 0.555130 1.1:+60443474 None:intergenic
ATGGCAATGCTACTAGCATA+CGG 0.556871 1.1:-60443533 MS.gene005156:CDS
TGGCAATGCTACTAGCATAC+GGG 0.563532 1.1:-60443532 MS.gene005156:CDS
GGGATGAACAATGGTTAAAA+CGG 0.566430 1.1:-60443392 MS.gene005156:CDS
CGCCGATGTTGTTATCGACA+GGG 0.567511 1.1:-60443422 MS.gene005156:CDS
TGCCGTGTTTGTGTCATCTG+CGG 0.578987 1.1:+60444124 None:intergenic
AGCCATGGCCACCGTCACAA+CGG 0.580091 1.1:+60444151 None:intergenic
GACTTTGGACAAAGGCAAAG+AGG 0.584181 1.1:-60443808 MS.gene005156:CDS
TACGTAACTTCTCAACAAGC+TGG 0.586441 1.1:+60443853 None:intergenic
GTTGTTGCAAGGTCAGATCA+AGG 0.586461 1.1:-60443331 MS.gene005156:CDS
GACAAAATCCAAGAAACCAA+TGG 0.589116 1.1:+60444398 None:intergenic
TCAGAGGCTATGGACAAAGC+AGG 0.591463 1.1:-60444009 MS.gene005156:CDS
AGGTCAGATCAAGGCTAGGT+TGG 0.595411 1.1:-60443322 MS.gene005156:CDS
TGTTATCGACAGGGGAAGTG+AGG 0.599112 1.1:-60443413 MS.gene005156:CDS
AATGTTAAGATGAAGGATGA+AGG 0.605406 1.1:-60443648 MS.gene005156:CDS
TTCTTCTTCGGATGACGAAG+AGG 0.605501 1.1:+60444361 None:intergenic
GAAATTTCCCACAAGATTTG+GGG 0.610345 1.1:-60443744 MS.gene005156:CDS
GTTATCGACAGGGGAAGTGA+GGG 0.615083 1.1:-60443412 MS.gene005156:CDS
CTGGATTACATTAAACAGCA+AGG 0.616623 1.1:-60443960 MS.gene005156:CDS
CCCCGCAGATGACACAAACA+CGG 0.617705 1.1:-60444126 MS.gene005156:CDS
GACGAGATTGAACTGTTGAA+GGG 0.620700 1.1:-60443987 MS.gene005156:CDS
CACAAGATGACTTTGGACAA+AGG 0.621465 1.1:-60443816 MS.gene005156:CDS
CGTGTTTGTGTCATCTGCGG+GGG 0.627292 1.1:+60444127 None:intergenic
AACATCCAAAACGTCATGGT+CGG 0.630878 1.1:+60443713 None:intergenic
TGACGAAGAGGAAGATGATG+AGG 0.633419 1.1:+60444373 None:intergenic
CCGTGTTTGTGTCATCTGCG+GGG 0.639190 1.1:+60444126 None:intergenic
CATCAACATCCAAAACGTCA+TGG 0.640991 1.1:+60443709 None:intergenic
TGCAAGGTCAGATCAAGGCT+AGG 0.648837 1.1:-60443326 MS.gene005156:CDS
GGCAATGCTACTAGCATACG+GGG 0.651150 1.1:-60443531 MS.gene005156:CDS
TGTTATAGTGGTAGTAGCCG+CGG 0.655252 1.1:+60444085 None:intergenic
GCCGATGTTGTTATCGACAG+GGG 0.669203 1.1:-60443421 MS.gene005156:CDS
ATGAACAATGGTTAAAACGG+AGG 0.670080 1.1:-60443389 MS.gene005156:CDS
GGGAAGTGAGGGATGAACAA+TGG 0.671370 1.1:-60443401 MS.gene005156:CDS
AACAAACACAACCACCACCG+CGG 0.675230 1.1:-60444102 MS.gene005156:CDS
CATGGCCACCGTCACAACGG+GGG 0.676320 1.1:+60444154 None:intergenic
CCATGGCCACCGTCACAACG+GGG 0.678792 1.1:+60444153 None:intergenic
TCCCCTGTCGATAACAACAT+CGG 0.682290 1.1:+60443420 None:intergenic
ACGGCGTTAAACAATATCAG+AGG 0.682928 1.1:-60444025 MS.gene005156:CDS
GCAAATACTACTATTCAAAG+CGG 0.683552 1.1:-60443933 MS.gene005156:CDS
TATAGTGGTAGTAGCCGCGG+TGG 0.689187 1.1:+60444088 None:intergenic
AGTTATTTCCAAATTCAGCG+TGG 0.691134 1.1:-60443889 MS.gene005156:CDS
TGAAGACCAAATGGACAATG+TGG 0.693003 1.1:-60444270 MS.gene005156:CDS
AACATCGGCGACGCACTGGG+TGG 0.698538 1.1:+60443435 None:intergenic
AGCTTGTTGAGAAGTTACGT+AGG 0.729557 1.1:-60443851 MS.gene005156:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAACAAAAAGTATTCAGA+CGG - chr1.1:60443659-60443678 MS.gene005156:CDS 20.0%
! ATTGTGAAGAAACAGATAAA+AGG - chr1.1:60444086-60444105 MS.gene005156:CDS 25.0%
! TATTGACAATGTTAAGATGA+AGG - chr1.1:60444048-60444067 MS.gene005156:CDS 25.0%
! TTAACATTGTCAATAAGATC+AGG + chr1.1:60444043-60444062 None:intergenic 25.0%
! TTGTGAAGAAACAGATAAAA+GGG - chr1.1:60444087-60444106 MS.gene005156:CDS 25.0%
AATGTTAAGATGAAGGATGA+AGG - chr1.1:60444055-60444074 MS.gene005156:CDS 30.0%
AGAAGTTACGTAGGTTAAAA+AGG - chr1.1:60443861-60443880 MS.gene005156:CDS 30.0%
CATTGTATGGACATAGAAAA+TGG + chr1.1:60443475-60443494 None:intergenic 30.0%
GCAAATACTACTATTCAAAG+CGG - chr1.1:60443770-60443789 MS.gene005156:CDS 30.0%
TTAAACAATATCAGAGGCTA+TGG - chr1.1:60443684-60443703 MS.gene005156:CDS 30.0%
TTCTTCTTCTTCTTCTTCTT+CGG + chr1.1:60443357-60443376 None:intergenic 30.0%
! TTTTCTATGTCCATACAATG+TGG - chr1.1:60443475-60443494 MS.gene005156:CDS 30.0%
AAGGAAACACAAGATGACTT+TGG - chr1.1:60443880-60443899 MS.gene005156:CDS 35.0%
ACAAAAAATGACCGGAACAA+TGG - chr1.1:60444151-60444170 MS.gene005156:CDS 35.0%
ACGTGAACACAAAAAATGAC+CGG - chr1.1:60444143-60444162 MS.gene005156:CDS 35.0%
ATGAACAATGGTTAAAACGG+AGG - chr1.1:60444314-60444333 MS.gene005156:CDS 35.0%
CGAAATTTCCCACAAGATTT+GGG - chr1.1:60443958-60443977 MS.gene005156:CDS 35.0%
CTGGATTACATTAAACAGCA+AGG - chr1.1:60443743-60443762 MS.gene005156:CDS 35.0%
CTTGTGGGAAATTTCGAAAA+TGG + chr1.1:60443954-60443973 None:intergenic 35.0%
GAAATTTCCCACAAGATTTG+GGG - chr1.1:60443959-60443978 MS.gene005156:CDS 35.0%
GACAAAATCCAAGAAACCAA+TGG + chr1.1:60443308-60443327 None:intergenic 35.0%
GGGATGAACAATGGTTAAAA+CGG - chr1.1:60444311-60444330 MS.gene005156:CDS 35.0%
TATCATCCACATTGTCCATT+TGG + chr1.1:60443442-60443461 None:intergenic 35.0%
TCAATAAGATCAGGACTTTC+AGG + chr1.1:60444034-60444053 None:intergenic 35.0%
TCGAAATTTCCCACAAGATT+TGG - chr1.1:60443957-60443976 MS.gene005156:CDS 35.0%
TGACAATGTTGAAGACCAAA+TGG - chr1.1:60443424-60443443 MS.gene005156:CDS 35.0%
TGAGGGATCTTGAAAGAAAT+CGG + chr1.1:60443923-60443942 None:intergenic 35.0%
! AACTGGAGGTGTATTTGAAT+CGG - chr1.1:60444344-60444363 MS.gene005156:CDS 35.0%
! AGTTATTTCCAAATTCAGCG+TGG - chr1.1:60443814-60443833 MS.gene005156:CDS 35.0%
! ATGGTTAAAACGGAGGATTT+TGG - chr1.1:60444321-60444340 MS.gene005156:CDS 35.0%
! CAATGTGGATGATAACGAAA+AGG - chr1.1:60443448-60443467 MS.gene005156:CDS 35.0%
! TTGTTTCTCACCATTGTTGA+AGG - chr1.1:60444219-60444238 MS.gene005156:CDS 35.0%
!! TTTTGAGCGTGTTGTTATAG+TGG + chr1.1:60443633-60443652 None:intergenic 35.0%
AACATCCAAAACGTCATGGT+CGG + chr1.1:60443993-60444012 None:intergenic 40.0%
AATTCAGCGTGGAATTCAAC+AGG - chr1.1:60443825-60443844 MS.gene005156:CDS 40.0%
ACCATTGTTGAAGGACCTAT+TGG - chr1.1:60444228-60444247 MS.gene005156:CDS 40.0%
ACGGCGTTAAACAATATCAG+AGG - chr1.1:60443678-60443697 MS.gene005156:CDS 40.0%
ATGGCAATGCTACTAGCATA+CGG - chr1.1:60444170-60444189 MS.gene005156:CDS 40.0%
CAATGGGAATGTTGTCCATT+TGG + chr1.1:60443508-60443527 None:intergenic 40.0%
CAATGTGGATGAAGACCAAA+TGG - chr1.1:60443490-60443509 MS.gene005156:CDS 40.0%
CACAAGATGACTTTGGACAA+AGG - chr1.1:60443887-60443906 MS.gene005156:CDS 40.0%
CATCAACATCCAAAACGTCA+TGG + chr1.1:60443997-60444016 None:intergenic 40.0%
CTACTGGAACATCATCCAAT+AGG + chr1.1:60444246-60444265 None:intergenic 40.0%
GACGAGATTGAACTGTTGAA+GGG - chr1.1:60443716-60443735 MS.gene005156:CDS 40.0%
GATTTCTTTCAAGATCCCTC+AGG - chr1.1:60443922-60443941 MS.gene005156:CDS 40.0%
GTTGAATTCCACGCTGAATT+TGG + chr1.1:60443825-60443844 None:intergenic 40.0%
TACGTAACTTCTCAACAAGC+TGG + chr1.1:60443853-60443872 None:intergenic 40.0%
TAGTAGCATTGCCATTGTTC+CGG + chr1.1:60444165-60444184 None:intergenic 40.0%
TCCAATAGGTCCTTCAACAA+TGG + chr1.1:60444232-60444251 None:intergenic 40.0%
TGAACTGTTGAAGGGATATC+TGG - chr1.1:60443724-60443743 MS.gene005156:CDS 40.0%
TGAAGACCAAATGGACAATG+TGG - chr1.1:60443433-60443452 MS.gene005156:CDS 40.0%
TGGTCTTCATCCACATTGTA+TGG + chr1.1:60443488-60443507 None:intergenic 40.0%
TGGTGAGAAACAAGACTTCA+TGG + chr1.1:60444212-60444231 None:intergenic 40.0%
!! AGCTTGTTGAGAAGTTACGT+AGG - chr1.1:60443852-60443871 MS.gene005156:CDS 40.0%
!! TGCTTTCACCATTGGTTTCT+TGG - chr1.1:60443297-60443316 MS.gene005156:CDS 40.0%
!!! AAAACGGAGGATTTTGGAAC+TGG - chr1.1:60444327-60444346 MS.gene005156:CDS 40.0%
AATCGGTTGGAGTTGTTGCA+AGG - chr1.1:60444361-60444380 MS.gene005156:CDS 45.0%
AGATCAGGACTTTCAGGAAC+AGG + chr1.1:60444028-60444047 None:intergenic 45.0%
ATCAGAAACGGCAAGTGCAA+TGG + chr1.1:60443525-60443544 None:intergenic 45.0%
GACTTTGGACAAAGGCAAAG+AGG - chr1.1:60443895-60443914 MS.gene005156:CDS 45.0%
GGACGAGATTGAACTGTTGA+AGG - chr1.1:60443715-60443734 MS.gene005156:CDS 45.0%
GTCATTGCCCCAAATCTTGT+GGG + chr1.1:60443969-60443988 None:intergenic 45.0%
GTTGTTGCAAGGTCAGATCA+AGG - chr1.1:60444372-60444391 MS.gene005156:CDS 45.0%
TCAGAAACGGCAAGTGCAAT+GGG + chr1.1:60443524-60443543 None:intergenic 45.0%
TCCCCTGTCGATAACAACAT+CGG + chr1.1:60444286-60444305 None:intergenic 45.0%
TGACGAAGAGGAAGATGATG+AGG + chr1.1:60443333-60443352 None:intergenic 45.0%
TGGCAATGCTACTAGCATAC+GGG - chr1.1:60444171-60444190 MS.gene005156:CDS 45.0%
TGTCATTGCCCCAAATCTTG+TGG + chr1.1:60443970-60443989 None:intergenic 45.0%
TGTTATAGTGGTAGTAGCCG+CGG + chr1.1:60443621-60443640 None:intergenic 45.0%
TTCTTCTTCGGATGACGAAG+AGG + chr1.1:60443345-60443364 None:intergenic 45.0%
! GGAGGTGTATTTGAATCGGT+TGG - chr1.1:60444348-60444367 MS.gene005156:CDS 45.0%
!! CGAAAATGGCTTGTTCCTGA+GGG + chr1.1:60443940-60443959 None:intergenic 45.0%
!! TCGAAAATGGCTTGTTCCTG+AGG + chr1.1:60443941-60443960 None:intergenic 45.0%
AACAAACACAACCACCACCG+CGG - chr1.1:60443601-60443620 MS.gene005156:CDS 50.0%
AACGGGGGATGCATCAGAAA+CGG + chr1.1:60443537-60443556 None:intergenic 50.0%
AGGTCAGATCAAGGCTAGGT+TGG - chr1.1:60444381-60444400 MS.gene005156:CDS 50.0%
CGCCGATGTTGTTATCGACA+GGG - chr1.1:60444281-60444300 MS.gene005156:CDS 50.0%
GCCGATGTTGTTATCGACAG+GGG - chr1.1:60444282-60444301 MS.gene005156:CDS 50.0%
GGCAATGCTACTAGCATACG+GGG - chr1.1:60444172-60444191 MS.gene005156:CDS 50.0%
GGGAAGTGAGGGATGAACAA+TGG - chr1.1:60444302-60444321 MS.gene005156:CDS 50.0%
GTTATCGACAGGGGAAGTGA+GGG - chr1.1:60444291-60444310 MS.gene005156:CDS 50.0%
TCAGAGGCTATGGACAAAGC+AGG - chr1.1:60443694-60443713 MS.gene005156:CDS 50.0%
TCGCCGATGTTGTTATCGAC+AGG - chr1.1:60444280-60444299 MS.gene005156:CDS 50.0%
TGCAAGGTCAGATCAAGGCT+AGG - chr1.1:60444377-60444396 MS.gene005156:CDS 50.0%
TGCCGTGTTTGTGTCATCTG+CGG + chr1.1:60443582-60443601 None:intergenic 50.0%
TGTTATCGACAGGGGAAGTG+AGG - chr1.1:60444290-60444309 MS.gene005156:CDS 50.0%
! TCAGATCAAGGCTAGGTTGG+AGG - chr1.1:60444384-60444403 MS.gene005156:CDS 50.0%
! TGACACCGACCATGACGTTT+TGG - chr1.1:60443985-60444004 MS.gene005156:CDS 50.0%
!!! ACGGAGGATTTTGGAACTGG+AGG - chr1.1:60444330-60444349 MS.gene005156:CDS 50.0%
AACAACATCGGCGACGCACT+GGG + chr1.1:60444274-60444293 None:intergenic 55.0%
CCCCGCAGATGACACAAACA+CGG - chr1.1:60443577-60443596 MS.gene005156:CDS 55.0%
CCGTGTTTGTGTCATCTGCG+GGG + chr1.1:60443580-60443599 None:intergenic 55.0%
CGTGTTTGTGTCATCTGCGG+GGG + chr1.1:60443579-60443598 None:intergenic 55.0%
GCCGTGTTTGTGTCATCTGC+GGG + chr1.1:60443581-60443600 None:intergenic 55.0%
TAACAACATCGGCGACGCAC+TGG + chr1.1:60444275-60444294 None:intergenic 55.0%
TATAGTGGTAGTAGCCGCGG+TGG + chr1.1:60443618-60443637 None:intergenic 55.0%
TGATGCATCCCCCGTTGTGA+CGG - chr1.1:60443541-60443560 MS.gene005156:CDS 55.0%
AGCCATGGCCACCGTCACAA+CGG + chr1.1:60443555-60443574 None:intergenic 60.0%
AACATCGGCGACGCACTGGG+TGG + chr1.1:60444271-60444290 None:intergenic 65.0%
AGTGGTAGTAGCCGCGGTGG+TGG + chr1.1:60443615-60443634 None:intergenic 65.0%
CATGGCCACCGTCACAACGG+GGG + chr1.1:60443552-60443571 None:intergenic 65.0%
CCATGGCCACCGTCACAACG+GGG + chr1.1:60443553-60443572 None:intergenic 65.0%
GCCATGGCCACCGTCACAAC+GGG + chr1.1:60443554-60443573 None:intergenic 65.0%
TGCATCCCCCGTTGTGACGG+TGG - chr1.1:60443544-60443563 MS.gene005156:CDS 65.0%
! GACGCACTGGGTGGCTCTAC+TGG + chr1.1:60444262-60444281 None:intergenic 65.0%
CCCCGTTGTGACGGTGGCCA+TGG - chr1.1:60443550-60443569 MS.gene005156:CDS 70.0%
GTCATCTGCGGGGGCAGCCA+TGG + chr1.1:60443570-60443589 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 60443296 60444429 60443296 ID=MS.gene005156
chr1.1 mRNA 60443296 60444429 60443296 ID=MS.gene005156.t1;Parent=MS.gene005156
chr1.1 exon 60443296 60444429 60443296 ID=MS.gene005156.t1.exon1;Parent=MS.gene005156.t1
chr1.1 CDS 60443296 60444429 60443296 ID=cds.MS.gene005156.t1;Parent=MS.gene005156.t1
Gene Sequence

>MS.gene005156

ATGCTTTCACCATTGGTTTCTTGGATTTTGTCAACCTCATCATCTTCCTCTTCGTCATCCGAAGAAGAAGAAGAAGAAGAAAGTCTTGACATTAATAATGACGAAGCAGACTGTGAAAACTTTGAAAATGACAATGTTGAAGACCAAATGGACAATGTGGATGATAACGAAAAGGACCATTTTCTATGTCCATACAATGTGGATGAAGACCAAATGGACAACATTCCCATTGCACTTGCCGTTTCTGATGCATCCCCCGTTGTGACGGTGGCCATGGCTGCCCCCGCAGATGACACAAACACGGCAACAAACACAACCACCACCGCGGCTACTACCACTATAACAACACGCTCAAAACGACAATATAACAAAAAGTATTCAGACGGCGTTAAACAATATCAGAGGCTATGGACAAAGCAGGACGAGATTGAACTGTTGAAGGGATATCTGGATTACATTAAACAGCAAGGAAGAGCAAATACTACTATTCAAAGCGGCGTAGCTTCATTCTATGATCAAGTTATTTCCAAATTCAGCGTGGAATTCAACAGGAACCAGCTTGTTGAGAAGTTACGTAGGTTAAAAAGGAAACACAAGATGACTTTGGACAAAGGCAAAGAGGTTCCGATTTCTTTCAAGATCCCTCAGGAACAAGCCATTTTCGAAATTTCCCACAAGATTTGGGGCAATGACACCGACCATGACGTTTTGGATGTTGATGAATCAAGACCTGTTCCTGAAAGTCCTGATCTTATTGACAATGTTAAGATGAAGGATGAAGGTGTTGACAATTGTGAAGAAACAGATAAAAGGGTGCACAAGCGTGTGAAGATAACAACAGATGACGACGTGAACACAAAAAATGACCGGAACAATGGCAATGCTACTAGCATACGGGGCTTCATTGAAGAAACCATGAAGTCTTGTTTCTCACCATTGTTGAAGGACCTATTGGATGATGTTCCAGTAGAGCCACCCAGTGCGTCGCCGATGTTGTTATCGACAGGGGAAGTGAGGGATGAACAATGGTTAAAACGGAGGATTTTGGAACTGGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAAGGTCAGATCAAGGCTAGGTTGGAGGAGTTAAAGTCTAGCTTAGATTGA
Protein sequence

>MS.gene005156.t1

MLSPLVSWILSTSSSSSSSSEEEEEEESLDINNDEADCENFENDNVEDQMDNVDDNEKDHFLCPYNVDEDQMDNIPIALAVSDASPVVTVAMAAPADDTNTATNTTTTAATTTITTRSKRQYNKKYSDGVKQYQRLWTKQDEIELLKGYLDYIKQQGRANTTIQSGVASFYDQVISKFSVEFNRNQLVEKLRRLKRKHKMTLDKGKEVPISFKIPQEQAIFEISHKIWGNDTDHDVLDVDESRPVPESPDLIDNVKMKDEGVDNCEETDKRVHKRVKITTDDDVNTKNDRNNGNATSIRGFIEETMKSCFSPLLKDLLDDVPVEPPSASPMLLSTGEVRDEQWLKRRILELEVYLNRLELLQGQIKARLEELKSSLD