AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005158

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005158.t1 MTR_1g081580 91.398 372 30 1 1 372 1 370 0.0 620
MS.gene005158.t1 MTR_7g114600 41.584 404 151 13 49 377 45 438 3.42e-82 258
MS.gene005158.t1 MTR_1g081560 33.962 371 188 13 18 373 44 372 1.88e-46 163
MS.gene005158.t1 MTR_1g081570 50.355 141 26 3 50 189 2 99 4.56e-33 119
MS.gene005158.t1 MTR_3g070120 37.778 135 74 3 97 231 153 277 1.29e-16 81.3
MS.gene005158.t1 MTR_2g010790 35.577 104 57 3 92 195 199 292 9.73e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005158.t1 AT5G28040 42.553 376 168 14 43 378 60 427 1.30e-71 231
MS.gene005158.t1 AT5G28040 42.553 376 168 14 43 378 60 427 1.30e-71 231
MS.gene005158.t1 AT3G04930 41.282 390 173 14 37 373 65 451 2.62e-58 197
MS.gene005158.t1 AT3G04930 42.545 275 124 10 60 303 94 365 2.19e-42 153
MS.gene005158.t1 AT4G00390 39.103 156 78 4 50 204 115 254 2.31e-22 97.8
MS.gene005158.t1 AT1G61730 36.646 161 92 3 35 194 97 248 3.21e-22 97.4
MS.gene005158.t1 AT4G25210 42.991 107 56 2 92 194 136 241 8.72e-21 93.2
MS.gene005158.t1 AT4G01260 38.365 159 71 7 61 194 51 207 1.80e-18 85.9
MS.gene005158.t1 AT4G00610 31.690 142 88 2 56 197 108 240 2.07e-17 82.8
MS.gene005158.t1 AT1G44810 38.889 108 60 2 92 199 117 218 1.50e-16 80.1
MS.gene005158.t1 AT1G11510 34.177 158 77 2 97 254 109 239 1.04e-15 77.8
MS.gene005158.t1 AT1G11510 34.177 158 77 2 97 254 138 268 1.19e-15 78.2
MS.gene005158.t1 AT5G14280 39.130 92 56 0 99 190 63 154 3.87e-15 75.9
MS.gene005158.t1 AT4G00238 36.036 111 63 2 98 206 141 245 1.00e-14 75.1
MS.gene005158.t1 AT2G25650 36.458 96 61 0 96 191 64 159 1.02e-14 75.5
MS.gene005158.t1 AT4G00250 37.037 108 62 1 98 205 116 217 1.09e-14 74.7
MS.gene005158.t1 AT2G01370 34.513 113 69 3 90 200 72 181 2.52e-14 72.8
MS.gene005158.t1 AT4G00270 35.417 96 62 0 96 191 63 158 1.00e-13 71.6
MS.gene005158.t1 AT2G36340 30.108 93 65 0 101 193 63 155 1.64e-11 65.9
MS.gene005158.t1 AT1G66420 32.203 118 66 3 97 207 87 197 3.83e-11 63.9

Find 109 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTCAAATGAGAAGAATT+AGG 0.169998 1.1:-60448364 None:intergenic
CCTTACCAGAATCAAATTTC+TGG 0.175110 1.1:-60448204 None:intergenic
TTGAAATTTCACACAAAATC+TGG 0.187804 1.1:+60448263 MS.gene005158:CDS
TAGGGTTAGGGTTAGGGTTT+GGG 0.208114 1.1:-60448345 None:intergenic
TCTTCCATTGGCTCCCGTTT+TGG 0.265008 1.1:-60447956 None:intergenic
AAGAATTAGGGTTAGGGTTA+GGG 0.289966 1.1:-60448351 None:intergenic
TTCATCAACATTGCTGCTAT+TGG 0.290264 1.1:-60448488 None:intergenic
GAAGAATTAGGGTTAGGGTT+AGG 0.292949 1.1:-60448352 None:intergenic
CTTATCAACAAGCTGGTTCT+TGG 0.314691 1.1:-60448146 None:intergenic
ACCATGAGTAGGAGTCCTTT+TGG 0.333255 1.1:+60448616 MS.gene005158:CDS
CAGTCAAATGAGAAGAATTA+GGG 0.345673 1.1:-60448363 None:intergenic
GCTCTCCAGAAATTTGATTC+TGG 0.345969 1.1:+60448199 MS.gene005158:CDS
TTAGGGTTAGGGTTAGGGTT+TGG 0.348108 1.1:-60448346 None:intergenic
AAATGAGAAGAATTAGGGTT+AGG 0.361264 1.1:-60448358 None:intergenic
GTGGAGGAAGCAGCAGATCT+TGG 0.365300 1.1:+60448738 MS.gene005158:CDS
ATTGCTGCTATTGGTATTAC+CGG 0.367170 1.1:-60448479 None:intergenic
GGAAGAGGGTTTGGAGCTGG+AGG 0.381688 1.1:+60448646 MS.gene005158:CDS
TCGTCTTATCATAACGATAC+TGG 0.386458 1.1:+60448079 MS.gene005158:CDS
GGAGGTGGGGACAGCGGCGG+TGG 0.386670 1.1:-60447873 None:intergenic
TGATAGTGGTGGTCGGTGTT+TGG 0.389979 1.1:-60447824 None:intergenic
ATATGATATTATCTATTGAT+TGG 0.394784 1.1:-60448884 None:intergenic
GCTGGAGCCGGAGCCGGAGC+TGG 0.400813 1.1:+60448844 MS.gene005158:CDS
TGAAATTTCACACAAAATCT+GGG 0.411047 1.1:+60448264 MS.gene005158:CDS
GCCGAAGGTTTCATCATGGC+TGG 0.421908 1.1:-60447747 None:intergenic
CGGCTCCCCTGAACCAAAAC+GGG 0.425461 1.1:+60447943 MS.gene005158:CDS
ACCAGCTTGTTGATAAGCTT+CGG 0.428179 1.1:+60448152 MS.gene005158:CDS
ATTTCCTCCTCTTCATCAAC+AGG 0.428859 1.1:-60448319 None:intergenic
TTTGGGGAGGGGAGAAAAGG+CGG 0.431266 1.1:+60448705 MS.gene005158:CDS
GGAGCCGGAGCTGGAGGTAG+TGG 0.440600 1.1:+60448853 MS.gene005158:CDS
AATGAGAAGAATTAGGGTTA+GGG 0.441702 1.1:-60448357 None:intergenic
GCTGGAGCTGGAGCCGGAGC+CGG 0.442271 1.1:+60448838 MS.gene005158:CDS
GAATTTGGGGAGGGGAGAAA+AGG 0.442864 1.1:+60448702 MS.gene005158:CDS
CCAGAAATTTGATTCTGGTA+AGG 0.445820 1.1:+60448204 MS.gene005158:CDS
TTTGTGTGAAATTTCAAAAG+TGG 0.448452 1.1:-60448257 None:intergenic
GAATGTTGACGGAGATTGTT+CGG 0.450712 1.1:-60447849 None:intergenic
CTGTTTGACACCGGTGTTGA+AGG 0.458464 1.1:+60448579 MS.gene005158:CDS
CTGATGCGGAGGCGTGTGGT+AGG 0.462324 1.1:-60447907 None:intergenic
AACGGTAATTCAACGCCAAT+TGG 0.467910 1.1:+60448292 MS.gene005158:CDS
TCGCTGGTCTTCTCTTCCAT+TGG 0.470929 1.1:-60447968 None:intergenic
TCATCAACAGGTACACCAAT+TGG 0.471428 1.1:-60448307 None:intergenic
TGGTTCAGGGGAGCCGTCGA+TGG 0.476050 1.1:-60447936 None:intergenic
GATGAAACCTTCGGCGTCGA+AGG 0.476310 1.1:+60447755 MS.gene005158:CDS
GAGATTGTTCGGTTTGATAG+TGG 0.479733 1.1:-60447838 None:intergenic
TTGAGATCGAATGCTGGAGC+TGG 0.483868 1.1:+60448826 MS.gene005158:CDS
TCGAATGCTGGAGCTGGAGC+CGG 0.484287 1.1:+60448832 MS.gene005158:CDS
ATTTCCACTACCTCCAGCTC+CGG 0.484287 1.1:-60448857 None:intergenic
TAGGGCTAAGATGACGGAGG+TGG 0.485162 1.1:-60447888 None:intergenic
ACTACCTCCAGCTCCGGCTC+CGG 0.492756 1.1:-60448851 None:intergenic
TCAATGAATACGGTGCCACT+TGG 0.497717 1.1:+60448673 MS.gene005158:CDS
AAAAGGCGGTGGATGAAAAG+TGG 0.498168 1.1:+60448719 MS.gene005158:CDS
CCCAGCCATGATGAAACCTT+CGG 0.498475 1.1:+60447746 MS.gene005158:CDS
CGCAATCTCGCAAGAGATCG+CGG 0.499446 1.1:+60448398 MS.gene005158:CDS
CACAAAATCTGGGGCAGCAA+CGG 0.505174 1.1:+60448274 MS.gene005158:CDS
GCGGCGGTGGCGAATGTTGA+CGG 0.506105 1.1:-60447860 None:intergenic
GAGATCGCGGGCAGCTGAGG+AGG 0.510050 1.1:+60448411 MS.gene005158:CDS
ACGGCTCCCCTGAACCAAAA+CGG 0.512535 1.1:+60447942 MS.gene005158:CDS
GAAGCGGTTGGAGCTGGTGC+AGG 0.515736 1.1:+60448777 MS.gene005158:CDS
AGTGGTGGTCGGTGTTTGGT+TGG 0.516624 1.1:-60447820 None:intergenic
CCGAAGGTTTCATCATGGCT+GGG 0.523112 1.1:-60447746 None:intergenic
AGGGCTAAGATGACGGAGGT+GGG 0.524316 1.1:-60447887 None:intergenic
CAAGAGATCGCGGGCAGCTG+AGG 0.524761 1.1:+60448408 MS.gene005158:CDS
GTATTCGAAGCGGTTGGAGC+TGG 0.525755 1.1:+60448771 MS.gene005158:CDS
GTCTTCACCTTCGACGCCGA+AGG 0.533544 1.1:-60447762 None:intergenic
GAAGCAGCAGATCTTGGAGC+TGG 0.536486 1.1:+60448744 MS.gene005158:CDS
ACCGTCTCTTCAATCAATCC+AGG 0.540585 1.1:-60448550 None:intergenic
GGAGCCGGAGCCGGAGCTGG+AGG 0.542893 1.1:+60448847 MS.gene005158:CDS
GGGGAGGGGAGAAAAGGCGG+TGG 0.544807 1.1:+60448708 MS.gene005158:CDS
TTCGGTTTGATAGTGGTGGT+CGG 0.548380 1.1:-60447831 None:intergenic
GCAATCTCGCAAGAGATCGC+GGG 0.549804 1.1:+60448399 MS.gene005158:CDS
AATCATGTGCATAATGTACC+TGG 0.550092 1.1:+60448532 MS.gene005158:CDS
TGAGATCAAGGTTGCGATCG+AGG 0.551018 1.1:+60448801 MS.gene005158:CDS
TGAACCAAAACGGGAGCCAA+TGG 0.551623 1.1:+60447952 MS.gene005158:CDS
CGATGACGAATTAGATGAAG+AGG 0.555461 1.1:+60447784 MS.gene005158:CDS
CATGAAGGGGAAGATTCAGC+TGG 0.556910 1.1:+60448117 MS.gene005158:CDS
TCCGAAGCTTATCAACAAGC+TGG 0.557121 1.1:-60448153 None:intergenic
GATGACGGAGGTGGGGACAG+CGG 0.558674 1.1:-60447879 None:intergenic
GAGGAGTTGAGATCGAATGC+TGG 0.564654 1.1:+60448820 MS.gene005158:CDS
CAAATTTCTGGAGAGCAGTA+CGG 0.564956 1.1:-60448192 None:intergenic
TTCAGGGGAGCCGTCGATGG+TGG 0.568651 1.1:-60447933 None:intergenic
GACGAGATTACGATTCTGCA+AGG 0.568828 1.1:+60448028 MS.gene005158:CDS
GTCGATGGTGGTTGCTGATG+CGG 0.569074 1.1:-60447921 None:intergenic
ATTGTTCGGTTTGATAGTGG+TGG 0.575227 1.1:-60447835 None:intergenic
CAATGAATACGGTGCCACTT+GGG 0.575454 1.1:+60448674 MS.gene005158:CDS
TTCGATAACTCCTTCAACAC+CGG 0.578505 1.1:-60448589 None:intergenic
GTGTGGTAGGGCTAAGATGA+CGG 0.582706 1.1:-60447894 None:intergenic
GGAGGTGTATTCGAAGCGGT+TGG 0.582984 1.1:+60448765 MS.gene005158:CDS
TGATGCGGAGGCGTGTGGTA+GGG 0.584219 1.1:-60447906 None:intergenic
CGAAGGTTTCATCATGGCTG+GGG 0.585517 1.1:-60447745 None:intergenic
GCTGGTGCAGGATGAGATCA+AGG 0.595852 1.1:+60448789 MS.gene005158:CDS
GATAATCATCAGAATAACTC+CGG 0.596997 1.1:+60448460 MS.gene005158:CDS
CGACGCCGAAGGTTTCATCA+TGG 0.602599 1.1:-60447751 None:intergenic
GTTGCTGATGCGGAGGCGTG+TGG 0.602604 1.1:-60447911 None:intergenic
ACCAAAAGGACTCCTACTCA+TGG 0.607964 1.1:-60448617 None:intergenic
GGGCTAAGATGACGGAGGTG+GGG 0.612836 1.1:-60447886 None:intergenic
GAAATTTCACACAAAATCTG+GGG 0.613296 1.1:+60448265 MS.gene005158:CDS
TATCGAATGCTACCATGAGT+AGG 0.615726 1.1:+60448605 MS.gene005158:CDS
GACGGAGGTGGGGACAGCGG+CGG 0.622679 1.1:-60447876 None:intergenic
AGCTGGAGGTGTATTCGAAG+CGG 0.623559 1.1:+60448761 MS.gene005158:CDS
TGGTGTACCTGTTGATGAAG+AGG 0.630690 1.1:+60448312 MS.gene005158:CDS
GCATCAGCAACCACCATCGA+CGG 0.632628 1.1:+60447923 MS.gene005158:CDS
CTCATGGCATTCTCTCGCAA+CGG 0.637134 1.1:+60447713 None:intergenic
ACCTGGATTGATTGAAGAGA+CGG 0.638435 1.1:+60448549 MS.gene005158:CDS
AGCTTGTTGATAAGCTTCGG+AGG 0.643387 1.1:+60448155 MS.gene005158:CDS
AGGCGGTGGATGAAAAGTGG+AGG 0.644490 1.1:+60448722 MS.gene005158:CDS
GCAGCAGATCTTGGAGCTGG+AGG 0.646814 1.1:+60448747 MS.gene005158:CDS
GGTGAAGAGCTGTTTGACAC+CGG 0.666966 1.1:+60448570 MS.gene005158:CDS
GATGGTGGTTGCTGATGCGG+AGG 0.694249 1.1:-60447918 None:intergenic
TGTACCTGTTGATGAAGAGG+AGG 0.712098 1.1:+60448315 MS.gene005158:CDS
TGGTAGGGCTAAGATGACGG+AGG 0.739720 1.1:-60447891 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GAAAATCGTGAAAAAAGTAA+CGG + chr1.1:60448508-60448527 MS.gene005158:CDS 25.0%
! TGAAATTTCACACAAAATCT+GGG + chr1.1:60448264-60448283 MS.gene005158:CDS 25.0%
! TTGAAATTTCACACAAAATC+TGG + chr1.1:60448263-60448282 MS.gene005158:CDS 25.0%
! TTTGTGTGAAATTTCAAAAG+TGG - chr1.1:60448260-60448279 None:intergenic 25.0%
AAATGAGAAGAATTAGGGTT+AGG - chr1.1:60448361-60448380 None:intergenic 30.0%
AATGAGAAGAATTAGGGTTA+GGG - chr1.1:60448360-60448379 None:intergenic 30.0%
CAGTCAAATGAGAAGAATTA+GGG - chr1.1:60448366-60448385 None:intergenic 30.0%
GAAATTTCACACAAAATCTG+GGG + chr1.1:60448265-60448284 MS.gene005158:CDS 30.0%
GATAATCATCAGAATAACTC+CGG + chr1.1:60448460-60448479 MS.gene005158:CDS 30.0%
TCAGTCAAATGAGAAGAATT+AGG - chr1.1:60448367-60448386 None:intergenic 30.0%
! ATCGTTTTATGATCACATGA+AGG + chr1.1:60448102-60448121 MS.gene005158:CDS 30.0%
! TCGTTTTATGATCACATGAA+GGG + chr1.1:60448103-60448122 MS.gene005158:CDS 30.0%
AAGAATTAGGGTTAGGGTTA+GGG - chr1.1:60448354-60448373 None:intergenic 35.0%
AATCATGTGCATAATGTACC+TGG + chr1.1:60448532-60448551 MS.gene005158:CDS 35.0%
ATTGCTGCTATTGGTATTAC+CGG - chr1.1:60448482-60448501 None:intergenic 35.0%
CCAGAAATTTGATTCTGGTA+AGG + chr1.1:60448204-60448223 MS.gene005158:CDS 35.0%
CCTTACCAGAATCAAATTTC+TGG - chr1.1:60448207-60448226 None:intergenic 35.0%
TCGTCTTATCATAACGATAC+TGG + chr1.1:60448079-60448098 MS.gene005158:CDS 35.0%
TTCATCAACATTGCTGCTAT+TGG - chr1.1:60448491-60448510 None:intergenic 35.0%
! CACTTGGGTTTTTGAATTTG+GGG + chr1.1:60448689-60448708 MS.gene005158:CDS 35.0%
! CCACTTGGGTTTTTGAATTT+GGG + chr1.1:60448688-60448707 MS.gene005158:CDS 35.0%
! CGTTTTATGATCACATGAAG+GGG + chr1.1:60448104-60448123 MS.gene005158:CDS 35.0%
! TGGAGGCTTTTCAATGAATA+CGG + chr1.1:60448663-60448682 MS.gene005158:CDS 35.0%
AAAAAGCTTTCGAGAATCGC+TGG - chr1.1:60447987-60448006 None:intergenic 40.0%
AACGGTAATTCAACGCCAAT+TGG + chr1.1:60448292-60448311 MS.gene005158:CDS 40.0%
ACCTGGATTGATTGAAGAGA+CGG + chr1.1:60448549-60448568 MS.gene005158:CDS 40.0%
ATTTCCTCCTCTTCATCAAC+AGG - chr1.1:60448322-60448341 None:intergenic 40.0%
CCCAAATTCAAAAACCCAAG+TGG - chr1.1:60448691-60448710 None:intergenic 40.0%
CGATGACGAATTAGATGAAG+AGG + chr1.1:60447784-60447803 MS.gene005158:CDS 40.0%
GAAGAATTAGGGTTAGGGTT+AGG - chr1.1:60448355-60448374 None:intergenic 40.0%
GAATGTTGACGGAGATTGTT+CGG - chr1.1:60447852-60447871 None:intergenic 40.0%
GCTCTCCAGAAATTTGATTC+TGG + chr1.1:60448199-60448218 MS.gene005158:CDS 40.0%
TATCGAATGCTACCATGAGT+AGG + chr1.1:60448605-60448624 MS.gene005158:CDS 40.0%
TCATCAACAGGTACACCAAT+TGG - chr1.1:60448310-60448329 None:intergenic 40.0%
TTCGATAACTCCTTCAACAC+CGG - chr1.1:60448592-60448611 None:intergenic 40.0%
! CAAATTTCTGGAGAGCAGTA+CGG - chr1.1:60448195-60448214 None:intergenic 40.0%
! CTTATCAACAAGCTGGTTCT+TGG - chr1.1:60448149-60448168 None:intergenic 40.0%
! GAGATTGTTCGGTTTGATAG+TGG - chr1.1:60447841-60447860 None:intergenic 40.0%
! GCCACTTGGGTTTTTGAATT+TGG + chr1.1:60448687-60448706 MS.gene005158:CDS 40.0%
! TGGGTTTTTGAATTTGGGGA+GGG + chr1.1:60448693-60448712 MS.gene005158:CDS 40.0%
! TTGGGTTTTTGAATTTGGGG+AGG + chr1.1:60448692-60448711 MS.gene005158:CDS 40.0%
!! ACCAGCTTGTTGATAAGCTT+CGG + chr1.1:60448152-60448171 MS.gene005158:CDS 40.0%
!! ATTGTTCGGTTTGATAGTGG+TGG - chr1.1:60447838-60447857 None:intergenic 40.0%
!!! AGTAGGAGTCCTTTTGGTTT+TGG + chr1.1:60448622-60448641 MS.gene005158:CDS 40.0%
!!! GAAAGCTTTTTCAGCGTATC+TGG + chr1.1:60447996-60448015 MS.gene005158:CDS 40.0%
!!! GTAGGAGTCCTTTTGGTTTT+GGG + chr1.1:60448623-60448642 MS.gene005158:CDS 40.0%
!!! TAGGAGTCCTTTTGGTTTTG+GGG + chr1.1:60448624-60448643 MS.gene005158:CDS 40.0%
AAAAGGCGGTGGATGAAAAG+TGG + chr1.1:60448719-60448738 MS.gene005158:CDS 45.0%
ACCAAAAGGACTCCTACTCA+TGG - chr1.1:60448620-60448639 None:intergenic 45.0%
ACCGTCTCTTCAATCAATCC+AGG - chr1.1:60448553-60448572 None:intergenic 45.0%
GACGAGATTACGATTCTGCA+AGG + chr1.1:60448028-60448047 MS.gene005158:CDS 45.0%
TAGGGTTAGGGTTAGGGTTT+GGG - chr1.1:60448348-60448367 None:intergenic 45.0%
TCCGAAGCTTATCAACAAGC+TGG - chr1.1:60448156-60448175 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGGTT+TGG - chr1.1:60448349-60448368 None:intergenic 45.0%
! ACCATGAGTAGGAGTCCTTT+TGG + chr1.1:60448616-60448635 MS.gene005158:CDS 45.0%
! GGGTTTTTGAATTTGGGGAG+GGG + chr1.1:60448694-60448713 MS.gene005158:CDS 45.0%
! TGGTGTACCTGTTGATGAAG+AGG + chr1.1:60448312-60448331 MS.gene005158:CDS 45.0%
! TGTACCTGTTGATGAAGAGG+AGG + chr1.1:60448315-60448334 MS.gene005158:CDS 45.0%
!! AGCTTGTTGATAAGCTTCGG+AGG + chr1.1:60448155-60448174 MS.gene005158:CDS 45.0%
!! CAATGAATACGGTGCCACTT+GGG + chr1.1:60448674-60448693 MS.gene005158:CDS 45.0%
!! TCAATGAATACGGTGCCACT+TGG + chr1.1:60448673-60448692 MS.gene005158:CDS 45.0%
!! TTCGGTTTGATAGTGGTGGT+CGG - chr1.1:60447834-60447853 None:intergenic 45.0%
!!! AGGAGTCCTTTTGGTTTTGG+GGG + chr1.1:60448625-60448644 MS.gene005158:CDS 45.0%
!!! CTTTTGGTTTTGGGGGAAGA+GGG + chr1.1:60448632-60448651 MS.gene005158:CDS 45.0%
ATTTCCACTACCTCCAGCTC+CGG - chr1.1:60448860-60448879 None:intergenic 50.0%
CATGAAGGGGAAGATTCAGC+TGG + chr1.1:60448117-60448136 MS.gene005158:CDS 50.0%
CCCAGCCATGATGAAACCTT+CGG + chr1.1:60447746-60447765 MS.gene005158:CDS 50.0%
CCGAAGGTTTCATCATGGCT+GGG - chr1.1:60447749-60447768 None:intergenic 50.0%
CCTCTTCCCCCAAAACCAAA+AGG - chr1.1:60448634-60448653 None:intergenic 50.0%
CGAAGGTTTCATCATGGCTG+GGG - chr1.1:60447748-60447767 None:intergenic 50.0%
GAATTTGGGGAGGGGAGAAA+AGG + chr1.1:60448702-60448721 MS.gene005158:CDS 50.0%
GAGGAGTTGAGATCGAATGC+TGG + chr1.1:60448820-60448839 MS.gene005158:CDS 50.0%
GGTGAAGAGCTGTTTGACAC+CGG + chr1.1:60448570-60448589 MS.gene005158:CDS 50.0%
GTGTGGTAGGGCTAAGATGA+CGG - chr1.1:60447897-60447916 None:intergenic 50.0%
TGAACCAAAACGGGAGCCAA+TGG + chr1.1:60447952-60447971 MS.gene005158:CDS 50.0%
TGAGATCAAGGTTGCGATCG+AGG + chr1.1:60448801-60448820 MS.gene005158:CDS 50.0%
TTGAGATCGAATGCTGGAGC+TGG + chr1.1:60448826-60448845 MS.gene005158:CDS 50.0%
! AGCTGGAGGTGTATTCGAAG+CGG + chr1.1:60448761-60448780 MS.gene005158:CDS 50.0%
! CACAAAATCTGGGGCAGCAA+CGG + chr1.1:60448274-60448293 MS.gene005158:CDS 50.0%
! CTGTTTGACACCGGTGTTGA+AGG + chr1.1:60448579-60448598 MS.gene005158:CDS 50.0%
!! TCGCTGGTCTTCTCTTCCAT+TGG - chr1.1:60447971-60447990 None:intergenic 50.0%
!! TGATAGTGGTGGTCGGTGTT+TGG - chr1.1:60447827-60447846 None:intergenic 50.0%
!!! ATTGGCTCCCGTTTTGGTTC+AGG - chr1.1:60447953-60447972 None:intergenic 50.0%
!!! CCTTTTGGTTTTGGGGGAAG+AGG + chr1.1:60448631-60448650 MS.gene005158:CDS 50.0%
!!! TCTTCCATTGGCTCCCGTTT+TGG - chr1.1:60447959-60447978 None:intergenic 50.0%
!!! TTGGCTCCCGTTTTGGTTCA+GGG - chr1.1:60447952-60447971 None:intergenic 50.0%
ACGGCTCCCCTGAACCAAAA+CGG + chr1.1:60447942-60447961 MS.gene005158:CDS 55.0%
AGGCGGTGGATGAAAAGTGG+AGG + chr1.1:60448722-60448741 MS.gene005158:CDS 55.0%
CGACGCCGAAGGTTTCATCA+TGG - chr1.1:60447754-60447773 None:intergenic 55.0%
CGCAATCTCGCAAGAGATCG+CGG + chr1.1:60448398-60448417 MS.gene005158:CDS 55.0%
GAAGCAGCAGATCTTGGAGC+TGG + chr1.1:60448744-60448763 MS.gene005158:CDS 55.0%
GCAATCTCGCAAGAGATCGC+GGG + chr1.1:60448399-60448418 MS.gene005158:CDS 55.0%
GCATCAGCAACCACCATCGA+CGG + chr1.1:60447923-60447942 MS.gene005158:CDS 55.0%
GCCGAAGGTTTCATCATGGC+TGG - chr1.1:60447750-60447769 None:intergenic 55.0%
GCTGGTGCAGGATGAGATCA+AGG + chr1.1:60448789-60448808 MS.gene005158:CDS 55.0%
GTATTCGAAGCGGTTGGAGC+TGG + chr1.1:60448771-60448790 MS.gene005158:CDS 55.0%
GTGGAGGAAGCAGCAGATCT+TGG + chr1.1:60448738-60448757 MS.gene005158:CDS 55.0%
TTTGGGGAGGGGAGAAAAGG+CGG + chr1.1:60448705-60448724 MS.gene005158:CDS 55.0%
! AGTGGTGGTCGGTGTTTGGT+TGG - chr1.1:60447823-60447842 None:intergenic 55.0%
! GATGAAACCTTCGGCGTCGA+AGG + chr1.1:60447755-60447774 MS.gene005158:CDS 55.0%
! GGAGGTGTATTCGAAGCGGT+TGG + chr1.1:60448765-60448784 MS.gene005158:CDS 55.0%
! GTCGATGGTGGTTGCTGATG+CGG - chr1.1:60447924-60447943 None:intergenic 55.0%
! TGGTAGGGCTAAGATGACGG+AGG - chr1.1:60447894-60447913 None:intergenic 55.0%
!! AGGGCTAAGATGACGGAGGT+GGG - chr1.1:60447890-60447909 None:intergenic 55.0%
!! TAGGGCTAAGATGACGGAGG+TGG - chr1.1:60447891-60447910 None:intergenic 55.0%
!!! GGTTTTGGGGGAAGAGGGTT+TGG + chr1.1:60448637-60448656 MS.gene005158:CDS 55.0%
!!! TGGCTCCCGTTTTGGTTCAG+GGG - chr1.1:60447951-60447970 None:intergenic 55.0%
CGGCTCCCCTGAACCAAAAC+GGG + chr1.1:60447943-60447962 MS.gene005158:CDS 60.0%
GCAGCAGATCTTGGAGCTGG+AGG + chr1.1:60448747-60448766 MS.gene005158:CDS 60.0%
GTCTTCACCTTCGACGCCGA+AGG - chr1.1:60447765-60447784 None:intergenic 60.0%
TCGAATGCTGGAGCTGGAGC+CGG + chr1.1:60448832-60448851 MS.gene005158:CDS 60.0%
! GATGGTGGTTGCTGATGCGG+AGG - chr1.1:60447921-60447940 None:intergenic 60.0%
! GGAAGAGGGTTTGGAGCTGG+AGG + chr1.1:60448646-60448665 MS.gene005158:CDS 60.0%
! TGATGCGGAGGCGTGTGGTA+GGG - chr1.1:60447909-60447928 None:intergenic 60.0%
!! GGGCTAAGATGACGGAGGTG+GGG - chr1.1:60447889-60447908 None:intergenic 60.0%
ACTACCTCCAGCTCCGGCTC+CGG - chr1.1:60448854-60448873 None:intergenic 65.0%
CAAGAGATCGCGGGCAGCTG+AGG + chr1.1:60448408-60448427 MS.gene005158:CDS 65.0%
GAAGCGGTTGGAGCTGGTGC+AGG + chr1.1:60448777-60448796 MS.gene005158:CDS 65.0%
GCGGCGGTGGCGAATGTTGA+CGG - chr1.1:60447863-60447882 None:intergenic 65.0%
TGGTTCAGGGGAGCCGTCGA+TGG - chr1.1:60447939-60447958 None:intergenic 65.0%
TTCAGGGGAGCCGTCGATGG+TGG - chr1.1:60447936-60447955 None:intergenic 65.0%
! CTGATGCGGAGGCGTGTGGT+AGG - chr1.1:60447910-60447929 None:intergenic 65.0%
! GGGGGAAGAGGGTTTGGAGC+TGG + chr1.1:60448643-60448662 MS.gene005158:CDS 65.0%
! GTTGCTGATGCGGAGGCGTG+TGG - chr1.1:60447914-60447933 None:intergenic 65.0%
!! GATGACGGAGGTGGGGACAG+CGG - chr1.1:60447882-60447901 None:intergenic 65.0%
GAGATCGCGGGCAGCTGAGG+AGG + chr1.1:60448411-60448430 MS.gene005158:CDS 70.0%
GGAGCCGGAGCTGGAGGTAG+TGG + chr1.1:60448853-60448872 MS.gene005158:CDS 70.0%
GGGGAGGGGAGAAAAGGCGG+TGG + chr1.1:60448708-60448727 MS.gene005158:CDS 70.0%
GACGGAGGTGGGGACAGCGG+CGG - chr1.1:60447879-60447898 None:intergenic 75.0%
GCTGGAGCTGGAGCCGGAGC+CGG + chr1.1:60448838-60448857 MS.gene005158:CDS 75.0%
! GCTGGAGCCGGAGCCGGAGC+TGG + chr1.1:60448844-60448863 MS.gene005158:CDS 80.0%
! GGAGCCGGAGCCGGAGCTGG+AGG + chr1.1:60448847-60448866 MS.gene005158:CDS 80.0%
! GGAGGTGGGGACAGCGGCGG+TGG - chr1.1:60447876-60447895 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 60447716 60448894 60447716 ID=MS.gene005158
chr1.1 mRNA 60447716 60448894 60447716 ID=MS.gene005158.t1;Parent=MS.gene005158
chr1.1 exon 60447716 60448894 60447716 ID=MS.gene005158.t1.exon1;Parent=MS.gene005158.t1
chr1.1 CDS 60447716 60448894 60447716 ID=cds.MS.gene005158.t1;Parent=MS.gene005158.t1
Gene Sequence

>MS.gene005158

ATGGCATTCTCTCGCAACGGCGTAGTTATCCCCAGCCATGATGAAACCTTCGGCGTCGAAGGTGAAGACGATGACGAATTAGATGAAGAGGACAACTATTTCGTCCAACCAAACACCGACCACCACTATCAAACCGAACAATCTCCGTCAACATTCGCCACCGCCGCTGTCCCCACCTCCGTCATCTTAGCCCTACCACACGCCTCCGCATCAGCAACCACCATCGACGGCTCCCCTGAACCAAAACGGGAGCCAATGGAAGAGAAGACCAGCGATTCTCGAAAGCTTTTTCAGCGTATCTGGACTGAAGAAGACGAGATTACGATTCTGCAAGGTTTTCTCGACTACAACGCAAATCGTGAATCGTCTTATCATAACGATACTGGATCGTTTTATGATCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAACCAGCTTGTTGATAAGCTTCGGAGGCTGAAGAAGAAGTACCGTACTGCTCTCCAGAAATTTGATTCTGGTAAGGATTTTACTTTCAAAAGTGCTCATGATCAAGCCACTTTTGAAATTTCACACAAAATCTGGGGCAGCAACGGTAATTCAACGCCAATTGGTGTACCTGTTGATGAAGAGGAGGAAATGAGCCCAAACCCTAACCCTAACCCTAATTCTTCTCATTTGACTGAGAAGAAAGCTGCGCAATCTCGCAAGAGATCGCGGGCAGCTGAGGAGGAAAAGTGTGAGTTGACTGATTCTAGAGATAATCATCAGAATAACTCCGGTAATACCAATAGCAGCAATGTTGATGAAAATCGTGAAAAAAGTAACGGTAATCATGTGCATAATGTACCTGGATTGATTGAAGAGACGGTGAAGAGCTGTTTGACACCGGTGTTGAAGGAGTTATCGAATGCTACCATGAGTAGGAGTCCTTTTGGTTTTGGGGGAAGAGGGTTTGGAGCTGGAGGCTTTTCAATGAATACGGTGCCACTTGGGTTTTTGAATTTGGGGAGGGGAGAAAAGGCGGTGGATGAAAAGTGGAGGAAGCAGCAGATCTTGGAGCTGGAGGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCGATCGAGGAGTTGAGATCGAATGCTGGAGCTGGAGCCGGAGCCGGAGCTGGAGGTAGTGGAAATAATACCAATCAATAG
Protein sequence

>MS.gene005158.t1

MAFSRNGVVIPSHDETFGVEGEDDDELDEEDNYFVQPNTDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRIWTEEDEITILQGFLDYNANRESSYHNDTGSFYDHMKGKIQLDFTKNQLVDKLRRLKKKYRTALQKFDSGKDFTFKSAHDQATFEISHKIWGSNGNSTPIGVPVDEEEEMSPNPNPNPNSSHLTEKKAAQSRKRSRAAEEEKCELTDSRDNHQNNSGNTNSSNVDENREKSNGNHVHNVPGLIEETVKSCLTPVLKELSNATMSRSPFGFGGRGFGAGGFSMNTVPLGFLNLGRGEKAVDEKWRKQQILELEVYSKRLELVQDEIKVAIEELRSNAGAGAGAGAGGSGNNTNQ