AlfalfaGEDB | MS.gene005158

M. sativa cultivar XinJiangDaYe / MS.gene005158

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005158.t1	XP_003591032.2	74	373	95	1	1	373	1	371	1.30E-124	456.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005158.t1	F4K5T4	37.7	350	188	8	53	373	74	422	8.7e-45	182.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005158.t1	G7I7E7	74.0	373	95	1	1	373	1	371	9.3e-125	456.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene005158.t1	TF	GeBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005158.t1	MTR_1g081580	91.398	372	30	1	1	372	1	370	0.0	620
MS.gene005158.t1	MTR_7g114600	41.584	404	151	13	49	377	45	438	3.42e-82	258
MS.gene005158.t1	MTR_1g081560	33.962	371	188	13	18	373	44	372	1.88e-46	163
MS.gene005158.t1	MTR_1g081570	50.355	141	26	3	50	189	2	99	4.56e-33	119
MS.gene005158.t1	MTR_3g070120	37.778	135	74	3	97	231	153	277	1.29e-16	81.3
MS.gene005158.t1	MTR_2g010790	35.577	104	57	3	92	195	199	292	9.73e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005158.t1	AT5G28040	42.553	376	168	14	43	378	60	427	1.30e-71	231
MS.gene005158.t1	AT5G28040	42.553	376	168	14	43	378	60	427	1.30e-71	231
MS.gene005158.t1	AT3G04930	41.282	390	173	14	37	373	65	451	2.62e-58	197
MS.gene005158.t1	AT3G04930	42.545	275	124	10	60	303	94	365	2.19e-42	153
MS.gene005158.t1	AT4G00390	39.103	156	78	4	50	204	115	254	2.31e-22	97.8
MS.gene005158.t1	AT1G61730	36.646	161	92	3	35	194	97	248	3.21e-22	97.4
MS.gene005158.t1	AT4G25210	42.991	107	56	2	92	194	136	241	8.72e-21	93.2
MS.gene005158.t1	AT4G01260	38.365	159	71	7	61	194	51	207	1.80e-18	85.9
MS.gene005158.t1	AT4G00610	31.690	142	88	2	56	197	108	240	2.07e-17	82.8
MS.gene005158.t1	AT1G44810	38.889	108	60	2	92	199	117	218	1.50e-16	80.1

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Find 109 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCGGTGGATGAAAAG+TGG	0.498168	1.1:+60448719	MS.gene005158:CDS
AAATGAGAAGAATTAGGGTT+AGG	0.361264	1.1:-60448358	None:intergenic
AACGGTAATTCAACGCCAAT+TGG	0.467910	1.1:+60448292	MS.gene005158:CDS
AAGAATTAGGGTTAGGGTTA+GGG	0.289966	1.1:-60448351	None:intergenic
AATCATGTGCATAATGTACC+TGG	0.550092	1.1:+60448532	MS.gene005158:CDS
AATGAGAAGAATTAGGGTTA+GGG	0.441702	1.1:-60448357	None:intergenic
ACCAAAAGGACTCCTACTCA+TGG	0.607964	1.1:-60448617	None:intergenic
ACCAGCTTGTTGATAAGCTT+CGG	0.428179	1.1:+60448152	MS.gene005158:CDS
ACCATGAGTAGGAGTCCTTT+TGG	0.333255	1.1:+60448616	MS.gene005158:CDS
ACCGTCTCTTCAATCAATCC+AGG	0.540585	1.1:-60448550	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGAAGAATTAGGGTT+AGG	-	chr1.1:60448361-60448380	None:intergenic	30.0%
AATGAGAAGAATTAGGGTTA+GGG	-	chr1.1:60448360-60448379	None:intergenic	30.0%
CAGTCAAATGAGAAGAATTA+GGG	-	chr1.1:60448366-60448385	None:intergenic	30.0%
GAAATTTCACACAAAATCTG+GGG	+	chr1.1:60448265-60448284	MS.gene005158:CDS	30.0%
GATAATCATCAGAATAACTC+CGG	+	chr1.1:60448460-60448479	MS.gene005158:CDS	30.0%
TCAGTCAAATGAGAAGAATT+AGG	-	chr1.1:60448367-60448386	None:intergenic	30.0%
AAGAATTAGGGTTAGGGTTA+GGG	-	chr1.1:60448354-60448373	None:intergenic	35.0%
AATCATGTGCATAATGTACC+TGG	+	chr1.1:60448532-60448551	MS.gene005158:CDS	35.0%
ATTGCTGCTATTGGTATTAC+CGG	-	chr1.1:60448482-60448501	None:intergenic	35.0%
CCAGAAATTTGATTCTGGTA+AGG	+	chr1.1:60448204-60448223	MS.gene005158:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	60447716	60448894	60447716	ID=MS.gene005158
chr1.1	mRNA	60447716	60448894	60447716	ID=MS.gene005158.t1;Parent=MS.gene005158
chr1.1	exon	60447716	60448894	60447716	ID=MS.gene005158.t1.exon1;Parent=MS.gene005158.t1
chr1.1	CDS	60447716	60448894	60447716	ID=cds.MS.gene005158.t1;Parent=MS.gene005158.t1

Gene Sequence

>MS.gene005158

ATGGCATTCTCTCGCAACGGCGTAGTTATCCCCAGCCATGATGAAACCTTCGGCGTCGAAGGTGAAGACGATGACGAATTAGATGAAGAGGACAACTATTTCGTCCAACCAAACACCGACCACCACTATCAAACCGAACAATCTCCGTCAACATTCGCCACCGCCGCTGTCCCCACCTCCGTCATCTTAGCCCTACCACACGCCTCCGCATCAGCAACCACCATCGACGGCTCCCCTGAACCAAAACGGGAGCCAATGGAAGAGAAGACCAGCGATTCTCGAAAGCTTTTTCAGCGTATCTGGACTGAAGAAGACGAGATTACGATTCTGCAAGGTTTTCTCGACTACAACGCAAATCGTGAATCGTCTTATCATAACGATACTGGATCGTTTTATGATCACATGAAGGGGAAGATTCAGCTGGATTTCACCAAGAACCAGCTTGTTGATAAGCTTCGGAGGCTGAAGAAGAAGTACCGTACTGCTCTCCAGAAATTTGATTCTGGTAAGGATTTTACTTTCAAAAGTGCTCATGATCAAGCCACTTTTGAAATTTCACACAAAATCTGGGGCAGCAACGGTAATTCAACGCCAATTGGTGTACCTGTTGATGAAGAGGAGGAAATGAGCCCAAACCCTAACCCTAACCCTAATTCTTCTCATTTGACTGAGAAGAAAGCTGCGCAATCTCGCAAGAGATCGCGGGCAGCTGAGGAGGAAAAGTGTGAGTTGACTGATTCTAGAGATAATCATCAGAATAACTCCGGTAATACCAATAGCAGCAATGTTGATGAAAATCGTGAAAAAAGTAACGGTAATCATGTGCATAATGTACCTGGATTGATTGAAGAGACGGTGAAGAGCTGTTTGACACCGGTGTTGAAGGAGTTATCGAATGCTACCATGAGTAGGAGTCCTTTTGGTTTTGGGGGAAGAGGGTTTGGAGCTGGAGGCTTTTCAATGAATACGGTGCCACTTGGGTTTTTGAATTTGGGGAGGGGAGAAAAGGCGGTGGATGAAAAGTGGAGGAAGCAGCAGATCTTGGAGCTGGAGGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCGATCGAGGAGTTGAGATCGAATGCTGGAGCTGGAGCCGGAGCCGGAGCTGGAGGTAGTGGAAATAATACCAATCAATAG

Protein sequence

>MS.gene005158.t1

MAFSRNGVVIPSHDETFGVEGEDDDELDEEDNYFVQPNTDHHYQTEQSPSTFATAAVPTSVILALPHASASATTIDGSPEPKREPMEEKTSDSRKLFQRIWTEEDEITILQGFLDYNANRESSYHNDTGSFYDHMKGKIQLDFTKNQLVDKLRRLKKKYRTALQKFDSGKDFTFKSAHDQATFEISHKIWGSNGNSTPIGVPVDEEEEMSPNPNPNPNSSHLTEKKAAQSRKRSRAAEEEKCELTDSRDNHQNNSGNTNSSNVDENREKSNGNHVHNVPGLIEETVKSCLTPVLKELSNATMSRSPFGFGGRGFGAGGFSMNTVPLGFLNLGRGEKAVDEKWRKQQILELEVYSKRLELVQDEIKVAIEELRSNAGAGAGAGAGGSGNNTNQ