Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005243.t1 | RHN80785.1 | 96.7 | 932 | 27 | 2 | 1 | 930 | 70 | 999 | 0.00E+00 | 1833.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005243.t1 | Q9SSE9 | 32.2 | 794 | 379 | 16 | 198 | 890 | 155 | 890 | 3.2e-114 | 414.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005243.t1 | A0A396JX83 | 96.7 | 932 | 27 | 2 | 1 | 930 | 70 | 999 | 0.0e+00 | 1833.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005243.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005243.t1 | MTR_1g083120 | 97.854 | 932 | 16 | 2 | 1 | 930 | 1 | 930 | 0.0 | 1887 |
| MS.gene005243.t1 | MTR_1g083120 | 97.854 | 932 | 16 | 2 | 1 | 930 | 18 | 947 | 0.0 | 1886 |
| MS.gene005243.t1 | MTR_1g083120 | 96.812 | 847 | 22 | 3 | 1 | 844 | 1 | 845 | 0.0 | 1699 |
| MS.gene005243.t1 | MTR_1g083120 | 97.727 | 836 | 15 | 2 | 1 | 834 | 1 | 834 | 0.0 | 1699 |
| MS.gene005243.t1 | MTR_7g117445 | 38.923 | 817 | 394 | 17 | 185 | 903 | 127 | 936 | 0.0 | 565 |
| MS.gene005243.t1 | MTR_7g117445 | 39.184 | 809 | 387 | 17 | 185 | 895 | 127 | 928 | 0.0 | 565 |
| MS.gene005243.t1 | MTR_7g117445 | 39.184 | 809 | 387 | 17 | 185 | 895 | 127 | 928 | 0.0 | 565 |
| MS.gene005243.t1 | MTR_7g117445 | 38.278 | 755 | 353 | 18 | 185 | 837 | 127 | 870 | 4.44e-164 | 502 |
| MS.gene005243.t1 | MTR_4g132540 | 37.432 | 732 | 404 | 14 | 191 | 894 | 162 | 867 | 3.05e-156 | 482 |
| MS.gene005243.t1 | MTR_1g114150 | 37.550 | 743 | 380 | 18 | 198 | 892 | 343 | 1049 | 7.16e-148 | 465 |
| MS.gene005243.t1 | MTR_5g065200 | 36.258 | 775 | 387 | 15 | 177 | 892 | 107 | 833 | 1.48e-140 | 439 |
| MS.gene005243.t1 | MTR_1g114070 | 35.074 | 747 | 397 | 13 | 192 | 892 | 219 | 923 | 1.43e-136 | 433 |
| MS.gene005243.t1 | MTR_1g069565 | 36.133 | 750 | 411 | 13 | 198 | 892 | 144 | 880 | 2.88e-136 | 430 |
| MS.gene005243.t1 | MTR_1g114130 | 36.170 | 752 | 397 | 16 | 198 | 899 | 327 | 1045 | 3.86e-136 | 435 |
| MS.gene005243.t1 | MTR_2g024270 | 34.672 | 747 | 402 | 14 | 183 | 900 | 137 | 826 | 4.97e-132 | 417 |
| MS.gene005243.t1 | MTR_2g024140 | 34.063 | 731 | 376 | 12 | 196 | 894 | 32 | 688 | 9.51e-132 | 412 |
| MS.gene005243.t1 | MTR_2g011630 | 32.595 | 767 | 445 | 18 | 195 | 898 | 204 | 961 | 1.17e-123 | 399 |
| MS.gene005243.t1 | MTR_2g011630 | 32.656 | 689 | 397 | 15 | 269 | 898 | 37 | 717 | 2.83e-113 | 364 |
| MS.gene005243.t1 | MTR_2g011630 | 32.656 | 689 | 397 | 15 | 269 | 898 | 69 | 749 | 4.54e-113 | 365 |
| MS.gene005243.t1 | MTR_5g047620 | 34.679 | 669 | 359 | 18 | 278 | 895 | 158 | 799 | 2.00e-110 | 360 |
| MS.gene005243.t1 | MTR_1g008060 | 39.442 | 502 | 267 | 10 | 185 | 662 | 848 | 1336 | 3.94e-110 | 373 |
| MS.gene005243.t1 | MTR_1g008060 | 50.000 | 154 | 73 | 1 | 745 | 894 | 1536 | 1689 | 1.49e-41 | 166 |
| MS.gene005243.t1 | MTR_1g008060 | 39.442 | 502 | 267 | 10 | 185 | 662 | 857 | 1345 | 4.34e-110 | 373 |
| MS.gene005243.t1 | MTR_1g008060 | 50.000 | 154 | 73 | 1 | 745 | 894 | 1545 | 1698 | 1.56e-41 | 166 |
| MS.gene005243.t1 | MTR_1g114150 | 36.495 | 622 | 315 | 17 | 198 | 775 | 343 | 928 | 6.71e-109 | 358 |
| MS.gene005243.t1 | MTR_0020s0100 | 32.219 | 658 | 331 | 15 | 272 | 875 | 94 | 690 | 3.55e-96 | 318 |
| MS.gene005243.t1 | MTR_1g069565 | 34.658 | 629 | 347 | 12 | 198 | 775 | 144 | 759 | 2.12e-94 | 319 |
| MS.gene005243.t1 | MTR_1g069565 | 47.748 | 111 | 58 | 0 | 782 | 892 | 827 | 937 | 6.72e-29 | 125 |
| MS.gene005243.t1 | MTR_4g091520 | 34.875 | 562 | 310 | 12 | 385 | 894 | 722 | 1279 | 2.59e-92 | 319 |
| MS.gene005243.t1 | MTR_4g091520 | 26.687 | 326 | 196 | 9 | 115 | 408 | 187 | 501 | 1.68e-24 | 111 |
| MS.gene005243.t1 | MTR_2g024240 | 38.365 | 318 | 141 | 4 | 536 | 849 | 115 | 381 | 9.99e-62 | 215 |
| MS.gene005243.t1 | MTR_4g091520 | 32.278 | 474 | 265 | 12 | 385 | 806 | 652 | 1121 | 2.28e-57 | 215 |
| MS.gene005243.t1 | MTR_4g091520 | 26.687 | 326 | 196 | 9 | 115 | 408 | 187 | 501 | 8.67e-25 | 112 |
| MS.gene005243.t1 | MTR_4g091520 | 32.347 | 473 | 264 | 12 | 385 | 805 | 722 | 1190 | 2.67e-57 | 215 |
| MS.gene005243.t1 | MTR_4g091520 | 26.687 | 326 | 196 | 9 | 115 | 408 | 187 | 501 | 1.28e-24 | 111 |
| MS.gene005243.t1 | MTR_4g091520 | 32.278 | 474 | 265 | 12 | 385 | 806 | 687 | 1156 | 2.77e-57 | 215 |
| MS.gene005243.t1 | MTR_4g091520 | 26.687 | 326 | 196 | 9 | 115 | 408 | 187 | 501 | 1.02e-24 | 112 |
| MS.gene005243.t1 | MTR_8g085480 | 93.269 | 104 | 5 | 1 | 59 | 162 | 1 | 102 | 8.52e-53 | 194 |
| MS.gene005243.t1 | MTR_8g062940 | 31.287 | 342 | 205 | 10 | 198 | 518 | 33 | 365 | 2.89e-40 | 153 |
| MS.gene005243.t1 | MTR_8g465700 | 39.344 | 183 | 106 | 2 | 467 | 649 | 2 | 179 | 7.51e-37 | 140 |
| MS.gene005243.t1 | MTR_5g031220 | 57.000 | 100 | 35 | 1 | 552 | 651 | 5 | 96 | 2.09e-29 | 113 |
| MS.gene005243.t1 | MTR_0295s0020 | 40.000 | 160 | 96 | 0 | 523 | 682 | 9 | 168 | 4.01e-29 | 115 |
| MS.gene005243.t1 | MTR_8g465720 | 50.575 | 87 | 38 | 2 | 752 | 834 | 54 | 139 | 4.59e-21 | 91.7 |
| MS.gene005243.t1 | MTR_8g013920 | 51.190 | 84 | 37 | 2 | 560 | 643 | 40 | 119 | 2.94e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005243.t1 | AT1G09060 | 52.818 | 958 | 382 | 18 | 2 | 926 | 5 | 925 | 0.0 | 952 |
| MS.gene005243.t1 | AT1G09060 | 52.818 | 958 | 382 | 18 | 2 | 926 | 19 | 939 | 0.0 | 952 |
| MS.gene005243.t1 | AT1G09060 | 52.818 | 958 | 382 | 18 | 2 | 926 | 5 | 925 | 0.0 | 952 |
| MS.gene005243.t1 | AT1G09060 | 52.818 | 958 | 382 | 18 | 2 | 926 | 19 | 939 | 0.0 | 952 |
| MS.gene005243.t1 | AT4G00990 | 37.913 | 786 | 426 | 15 | 168 | 894 | 50 | 832 | 1.76e-175 | 531 |
| MS.gene005243.t1 | AT1G11950 | 37.483 | 731 | 375 | 12 | 198 | 896 | 193 | 873 | 1.67e-162 | 498 |
| MS.gene005243.t1 | AT1G11950 | 37.483 | 731 | 375 | 12 | 198 | 896 | 193 | 873 | 1.67e-162 | 498 |
| MS.gene005243.t1 | AT4G00990 | 36.612 | 732 | 402 | 15 | 168 | 840 | 50 | 778 | 1.73e-152 | 469 |
| MS.gene005243.t1 | AT1G62310 | 36.278 | 747 | 394 | 13 | 171 | 880 | 182 | 883 | 1.46e-151 | 470 |
| MS.gene005243.t1 | AT4G00990 | 36.639 | 726 | 398 | 15 | 168 | 834 | 50 | 772 | 3.60e-151 | 465 |
| MS.gene005243.t1 | AT1G11950 | 36.419 | 659 | 337 | 12 | 198 | 824 | 193 | 801 | 6.62e-135 | 424 |
| MS.gene005243.t1 | AT3G07610 | 35.393 | 534 | 269 | 11 | 378 | 890 | 412 | 890 | 6.84e-96 | 325 |
| MS.gene005243.t1 | AT3G07610 | 38.509 | 161 | 94 | 2 | 198 | 353 | 155 | 315 | 1.11e-27 | 121 |
| MS.gene005243.t1 | AT4G21430 | 28.223 | 985 | 551 | 25 | 10 | 901 | 1 | 922 | 2.22e-93 | 316 |
| MS.gene005243.t1 | AT3G07610 | 33.515 | 549 | 281 | 11 | 378 | 890 | 412 | 912 | 1.40e-91 | 313 |
| MS.gene005243.t1 | AT3G07610 | 38.509 | 161 | 94 | 2 | 198 | 353 | 155 | 315 | 1.09e-27 | 121 |
| MS.gene005243.t1 | AT3G07610 | 38.328 | 287 | 148 | 6 | 378 | 647 | 412 | 686 | 7.12e-53 | 198 |
| MS.gene005243.t1 | AT3G07610 | 38.509 | 161 | 94 | 2 | 198 | 353 | 155 | 315 | 3.11e-27 | 119 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTTTCAAAGTACCTTTA+TGG | 0.103621 | 1.4:+67209733 | None:intergenic |
| AAAATGCATTGGAAGGAATT+TGG | 0.117264 | 1.4:-67207031 | MS.gene005243:CDS |
| ACAGCCTCTCCCAGGCTTTC+AGG | 0.158007 | 1.4:+67204698 | None:intergenic |
| GAAACCATTGCAGTCAAATT+AGG | 0.160025 | 1.4:+67204208 | None:intergenic |
| GCCCGATTCTGATGTTAATT+TGG | 0.164890 | 1.4:-67210819 | MS.gene005243:CDS |
| GGTGTTCTTGGTTCTTCTTC+TGG | 0.179795 | 1.4:-67210662 | MS.gene005243:CDS |
| GATCCATAGTCGAATCTTTC+TGG | 0.186429 | 1.4:+67207206 | None:intergenic |
| AGAGCATTCAATCCGGTTTC+TGG | 0.191043 | 1.4:+67208831 | None:intergenic |
| CCCAAGATATATATATCTTA+TGG | 0.235470 | 1.4:-67208166 | MS.gene005243:CDS |
| AAATACTTGCTTAACGATAA+TGG | 0.238092 | 1.4:+67208686 | None:intergenic |
| GAAATTCCATTAAGAGAAAA+TGG | 0.241180 | 1.4:-67207136 | MS.gene005243:CDS |
| GTGGTCATTTGAACAGAATT+TGG | 0.246046 | 1.4:-67205785 | MS.gene005243:CDS |
| TGCTGATAAATTCAGGTCTT+TGG | 0.246754 | 1.4:+67208281 | None:intergenic |
| TATACTCCTGAGGGTGTTCT+TGG | 0.266607 | 1.4:-67210674 | MS.gene005243:CDS |
| TAGCCTCTCTTTGAGAATAT+TGG | 0.273066 | 1.4:+67208799 | None:intergenic |
| TTCTAGTGCTGAAGGGAATT+TGG | 0.276012 | 1.4:-67207167 | MS.gene005243:CDS |
| AGAAAGTTGAAGGAAGAATT+TGG | 0.277810 | 1.4:-67206825 | MS.gene005243:intron |
| GATGAATTGGGTCGCAAAAT+TGG | 0.279524 | 1.4:-67208910 | MS.gene005243:CDS |
| TAACACATCCTGGAGTTCTT+TGG | 0.283302 | 1.4:-67207099 | MS.gene005243:CDS |
| GAGGGGCGTATTCTTGAAAA+TGG | 0.290306 | 1.4:-67208370 | MS.gene005243:CDS |
| TGAAGCAAAACTTCAAGTTT+TGG | 0.298343 | 1.4:-67204636 | MS.gene005243:CDS |
| AAATGCATTGGAAGGAATTT+GGG | 0.300110 | 1.4:-67207030 | MS.gene005243:CDS |
| TGGTCATTTGAACAGAATTT+GGG | 0.307570 | 1.4:-67205784 | MS.gene005243:CDS |
| AAGGTTACATGGCCTCTTTA+TGG | 0.309641 | 1.4:-67206879 | MS.gene005243:CDS |
| AAGGCCCTAGATTGCTTAGA+TGG | 0.312267 | 1.4:-67208567 | MS.gene005243:CDS |
| TTATTTGTTGTCGAGATCTT+CGG | 0.314794 | 1.4:-67209109 | MS.gene005243:CDS |
| AATGATTCGCAGCATGCTTC+TGG | 0.315847 | 1.4:-67210557 | MS.gene005243:CDS |
| CAGACCCATCTAAGCAATCT+AGG | 0.320775 | 1.4:+67208562 | None:intergenic |
| GCTTTGTAGGAATGTTCTAA+TGG | 0.324197 | 1.4:-67210074 | MS.gene005243:intron |
| CTGTTCTGTTTGAAGAGAAT+TGG | 0.327002 | 1.4:-67210586 | MS.gene005243:CDS |
| CCCATAAGATATATATATCT+TGG | 0.327688 | 1.4:+67208165 | None:intergenic |
| CTCGCTCTTGAACATATATC+TGG | 0.332426 | 1.4:+67207283 | None:intergenic |
| CATCGTTCTTCCTCTTCCTC+TGG | 0.337522 | 1.4:-67210737 | MS.gene005243:CDS |
| GGCAGTTTGCTGATAAATTC+AGG | 0.343481 | 1.4:+67208274 | None:intergenic |
| AACACATCCTGGAGTTCTTT+GGG | 0.346937 | 1.4:-67207098 | MS.gene005243:CDS |
| TTTAAATATTCAGTCACCTT+TGG | 0.350359 | 1.4:+67207052 | None:intergenic |
| GGAAATAATGTTTCCAATCC+TGG | 0.352315 | 1.4:-67210641 | MS.gene005243:CDS |
| AATACTTGCTTAACGATAAT+GGG | 0.353840 | 1.4:+67208687 | None:intergenic |
| TGAACATTTCTTGCTTGAAA+AGG | 0.355205 | 1.4:+67205733 | None:intergenic |
| GAAGATCTCGACAACAAATA+AGG | 0.359165 | 1.4:+67209111 | None:intergenic |
| TTTAGAACACACTGGAAAAC+TGG | 0.367699 | 1.4:-67208714 | MS.gene005243:CDS |
| CTTGGTGGAGAGATTGGATA+TGG | 0.368338 | 1.4:-67204235 | MS.gene005243:CDS |
| ACCAGACTTGGTGGAGAGAT+TGG | 0.370100 | 1.4:-67204241 | MS.gene005243:intron |
| TTCCAAATTAACATCAGAAT+CGG | 0.370838 | 1.4:+67210817 | None:intergenic |
| TCCTTCAGCTTCAATATTTG+TGG | 0.372789 | 1.4:+67208343 | None:intergenic |
| TGGAATACTTCCATTGTCAT+TGG | 0.386764 | 1.4:+67208995 | None:intergenic |
| CACAACCACCATACTCCTTA+GGG | 0.390836 | 1.4:+67208967 | None:intergenic |
| TATTTGTTGTCGAGATCTTC+GGG | 0.393312 | 1.4:-67209108 | MS.gene005243:CDS |
| GCTGGGACCCGTTGGTCATA+TGG | 0.402966 | 1.4:-67208644 | MS.gene005243:CDS |
| CCAAGATATATATATCTTAT+GGG | 0.408326 | 1.4:-67208165 | MS.gene005243:CDS |
| CAACTTCAAAACATTGTTCT+CGG | 0.409288 | 1.4:+67209529 | None:intergenic |
| CCACAACCACCATACTCCTT+AGG | 0.411071 | 1.4:+67208966 | None:intergenic |
| AAACCATTGCAGTCAAATTA+GGG | 0.411485 | 1.4:+67204209 | None:intergenic |
| GAACATTTCTTGCTTGAAAA+GGG | 0.412637 | 1.4:+67205734 | None:intergenic |
| TCGTTAAGCAAGTATTTGAT+AGG | 0.414199 | 1.4:-67208680 | MS.gene005243:CDS |
| TCGGATTCTTCTCAAGAAAC+TGG | 0.416224 | 1.4:-67210047 | MS.gene005243:CDS |
| TTCTTTCGCCTCAGATTCCT+TGG | 0.420770 | 1.4:+67207318 | None:intergenic |
| TGGGAAGAAGTTGTTTGATA+AGG | 0.421539 | 1.4:-67210717 | MS.gene005243:CDS |
| TGTTCTGTTTGAAGAGAATT+GGG | 0.421859 | 1.4:-67210585 | MS.gene005243:CDS |
| CTCTTGCAACGTAAATCGTC+TGG | 0.425121 | 1.4:+67210971 | None:intergenic |
| TCTGCATTCAACTTTGTCCT+TGG | 0.431290 | 1.4:+67209338 | None:intergenic |
| GTTGGTGCCTTAAGTGTGAT+AGG | 0.432776 | 1.4:-67209980 | MS.gene005243:CDS |
| TTGGGATGTCTTTCGTCGGC+AGG | 0.434880 | 1.4:-67207080 | MS.gene005243:CDS |
| TTTCTTATCTCCTGAAAGCC+TGG | 0.435049 | 1.4:-67204708 | MS.gene005243:CDS |
| CCTGGGAGAGGCTGTAAGAT+TGG | 0.435726 | 1.4:-67204690 | MS.gene005243:CDS |
| GCTGATGGTCCGCCAGAAAC+CGG | 0.441491 | 1.4:-67208843 | MS.gene005243:CDS |
| CGTCGATGATAATCAGTGAT+AGG | 0.450394 | 1.4:+67209161 | None:intergenic |
| CACAAATCATATGAACAACT+TGG | 0.454054 | 1.4:+67209134 | None:intergenic |
| AGATGATAACAGAATGGTTA+AGG | 0.455606 | 1.4:-67208586 | MS.gene005243:CDS |
| TCCAAATTAACATCAGAATC+GGG | 0.458258 | 1.4:+67210818 | None:intergenic |
| TTTGTACAAAAGGATGAATC+GGG | 0.459023 | 1.4:+67207256 | None:intergenic |
| AACAGAACAGCATCCTCATC+AGG | 0.461198 | 1.4:+67210599 | None:intergenic |
| TTTCTTGCAGCAATTTATGT+AGG | 0.463838 | 1.4:-67209187 | MS.gene005243:intron |
| TATTAAGCAAGTTTCCTCTC+TGG | 0.464228 | 1.4:-67209022 | MS.gene005243:CDS |
| AGACCAGAAAGATTCGACTA+TGG | 0.464343 | 1.4:-67207209 | MS.gene005243:CDS |
| ATCACCACCATCACCAGGAT+TGG | 0.464388 | 1.4:+67210628 | None:intergenic |
| ATCCTCTCCTATCACACTTA+AGG | 0.464698 | 1.4:+67209973 | None:intergenic |
| GAAGCTATATTTGTTCCTGC+TGG | 0.468299 | 1.4:-67205760 | MS.gene005243:CDS |
| CAGGTATTCTGACATTCCAT+TGG | 0.468355 | 1.4:-67209828 | MS.gene005243:CDS |
| ATCGTTCTTCCTCTTCCTCT+GGG | 0.470606 | 1.4:-67210736 | MS.gene005243:CDS |
| GGCGTATTCTTGAAAATGGT+TGG | 0.471181 | 1.4:-67208366 | MS.gene005243:CDS |
| AGAATGTTAAAGATGTTAGT+TGG | 0.471334 | 1.4:-67209998 | MS.gene005243:CDS |
| CCTAAGGAGTATGGTGGTTG+TGG | 0.476271 | 1.4:-67208966 | MS.gene005243:CDS |
| TCCCTCTCCATATGACCAAC+GGG | 0.476420 | 1.4:+67208637 | None:intergenic |
| CAACTTCTTCCCAGAGGAAG+AGG | 0.476632 | 1.4:+67210727 | None:intergenic |
| ACGTAGTGATAATTCCATAA+AGG | 0.478151 | 1.4:-67209747 | MS.gene005243:intron |
| ACACCATAAAAGAAAGTTGA+AGG | 0.478429 | 1.4:-67206835 | MS.gene005243:CDS |
| ATCTTCTGAATTTCATCCAA+TGG | 0.480645 | 1.4:+67209812 | None:intergenic |
| AATGTAGAGGAAATGGTTAG+TGG | 0.483900 | 1.4:-67208882 | MS.gene005243:CDS |
| ACTCTGGATTCAAGGTTACA+TGG | 0.484043 | 1.4:-67206890 | MS.gene005243:intron |
| CCATAAGATATATATATCTT+GGG | 0.484574 | 1.4:+67208166 | None:intergenic |
| AATGTAATGCTTCTCGCAAA+CGG | 0.484775 | 1.4:+67210898 | None:intergenic |
| GAAGTTTATTCTAGTGCTGA+AGG | 0.487491 | 1.4:-67207175 | MS.gene005243:CDS |
| GCTTCTGGTGACGATTCTGC+CGG | 0.506252 | 1.4:-67210542 | MS.gene005243:CDS |
| TTTCAGGAGATAAGAAATCA+AGG | 0.511304 | 1.4:+67204714 | None:intergenic |
| TTCTTTGGGATGTCTTTCGT+CGG | 0.513012 | 1.4:-67207084 | MS.gene005243:CDS |
| TTCTTATCTCCTGAAAGCCT+GGG | 0.514336 | 1.4:-67204707 | MS.gene005243:CDS |
| CTTCACTTGAATGAACCAAA+AGG | 0.514430 | 1.4:+67207392 | None:intergenic |
| TAACATTCTTCCTACACTGA+TGG | 0.516586 | 1.4:+67210012 | None:intergenic |
| CTTCATGTTCATTAGGTAGA+CGG | 0.516591 | 1.4:+67204654 | None:intergenic |
| TCTTCAGATGCACGAGGTGT+AGG | 0.516978 | 1.4:+67208316 | None:intergenic |
| GAACTCAAAACTGATGGGAT+TGG | 0.517201 | 1.4:-67208741 | MS.gene005243:CDS |
| TCTGAAGAACTCAAAACTGA+TGG | 0.518148 | 1.4:-67208747 | MS.gene005243:CDS |
| CGGTGGATCTGCTTTACCAC+GGG | 0.519281 | 1.4:+67209549 | None:intergenic |
| ATTTCAGTCCACTGTTCAGT+TGG | 0.520271 | 1.4:-67204738 | MS.gene005243:intron |
| AAATATTGAAGCTGAAGGAT+TGG | 0.523058 | 1.4:-67208339 | MS.gene005243:CDS |
| GATACGTGAGATACCTGTAC+TGG | 0.524492 | 1.4:-67209613 | MS.gene005243:CDS |
| AAAGATTCGACTATGGATCA+AGG | 0.524675 | 1.4:-67207202 | MS.gene005243:CDS |
| TTTCTTGAGATTAGCTCTCA+TGG | 0.524983 | 1.4:+67210847 | None:intergenic |
| GGCTGTAAGATTGGCAGAGG+AGG | 0.525897 | 1.4:-67204681 | MS.gene005243:CDS |
| ATTTAGCTGCAACATTAAGA+AGG | 0.525942 | 1.4:+67208221 | None:intergenic |
| AACATTAAGAAGGCCCCACT+TGG | 0.526087 | 1.4:+67208231 | None:intergenic |
| ATCTCCTGAAAGCCTGGGAG+AGG | 0.527327 | 1.4:-67204702 | MS.gene005243:CDS |
| TAGGTCATCAATTTCAAGCT+GGG | 0.529512 | 1.4:-67208661 | MS.gene005243:CDS |
| AAAATAGCTCCACCATAAAG+AGG | 0.531360 | 1.4:+67206867 | None:intergenic |
| TACTGTAACTTATCCAGTAC+AGG | 0.533016 | 1.4:+67209600 | None:intergenic |
| ATTCATCATTAAATTTAAGT+CGG | 0.534951 | 1.4:-67208941 | MS.gene005243:CDS |
| AGAGGCTGTAAGATTGGCAG+AGG | 0.535711 | 1.4:-67204684 | MS.gene005243:CDS |
| GAGTGAATATACTGAAGTAA+AGG | 0.537744 | 1.4:+67208253 | None:intergenic |
| GATTCTGCCGGGAAAATGAC+AGG | 0.539819 | 1.4:-67210530 | MS.gene005243:CDS |
| GCTTGAAAAGGGCAACCAGC+AGG | 0.541465 | 1.4:+67205745 | None:intergenic |
| AGACCCTAATTTGACTGCAA+TGG | 0.543203 | 1.4:-67204212 | MS.gene005243:CDS |
| GTGAAGTAAAGCTGAAGGAC+TGG | 0.545029 | 1.4:-67207375 | MS.gene005243:CDS |
| ATAGGTCATCAATTTCAAGC+TGG | 0.549235 | 1.4:-67208662 | MS.gene005243:CDS |
| GAAGAACCAAGAACACCCTC+AGG | 0.550770 | 1.4:+67210668 | None:intergenic |
| ATTCTTCTCAAGAAACTGGC+AGG | 0.551098 | 1.4:-67210043 | MS.gene005243:CDS |
| TATGGGATTACTGATGAACT+TGG | 0.552298 | 1.4:-67208148 | MS.gene005243:CDS |
| AGAGATCAGACGGGAAGCAA+TGG | 0.553840 | 1.4:-67210952 | MS.gene005243:CDS |
| CTGAGGCGAAAGAATCTCAT+GGG | 0.556863 | 1.4:-67207309 | MS.gene005243:CDS |
| CTTCTGGTGACGATTCTGCC+GGG | 0.557113 | 1.4:-67210541 | MS.gene005243:CDS |
| TATGAAAGATGATAACAGAA+TGG | 0.559574 | 1.4:-67208592 | MS.gene005243:CDS |
| GAAAATGACAGGCAGGAGCA+TGG | 0.560487 | 1.4:-67210519 | MS.gene005243:CDS |
| CTGAAGAACTCAAAACTGAT+GGG | 0.561347 | 1.4:-67208746 | MS.gene005243:CDS |
| AAGTCTGAGAGCATTCAATC+CGG | 0.563408 | 1.4:+67208824 | None:intergenic |
| CCAATCTTACAGCCTCTCCC+AGG | 0.564811 | 1.4:+67204690 | None:intergenic |
| GTTACATGGCCTCTTTATGG+TGG | 0.565117 | 1.4:-67206876 | MS.gene005243:CDS |
| GCCACAAATATTGAAGCTGA+AGG | 0.566332 | 1.4:-67208344 | MS.gene005243:CDS |
| CTCTGGAGATCCAATGACAA+TGG | 0.566848 | 1.4:-67209005 | MS.gene005243:CDS |
| TGATGCTCCGCTTTCAACTG+CGG | 0.567371 | 1.4:-67210777 | MS.gene005243:CDS |
| CTGCCGGGAAAATGACAGGC+AGG | 0.567838 | 1.4:-67210526 | MS.gene005243:CDS |
| TTCAAGTGAAGTAAAGCTGA+AGG | 0.568784 | 1.4:-67207380 | MS.gene005243:CDS |
| AGACCCATCTAAGCAATCTA+GGG | 0.569499 | 1.4:+67208563 | None:intergenic |
| AAGATTCGACTATGGATCAA+GGG | 0.569772 | 1.4:-67207201 | MS.gene005243:CDS |
| TTCAGTATATTCACTCCAAG+TGG | 0.572592 | 1.4:-67208246 | MS.gene005243:CDS |
| AATTTCAAGCTGGGACCCGT+TGG | 0.574220 | 1.4:-67208652 | MS.gene005243:CDS |
| TAAAGCTGAAGGACTGGCAG+CGG | 0.575777 | 1.4:-67207369 | MS.gene005243:CDS |
| AAGACATCCCAAAGAACTCC+AGG | 0.576515 | 1.4:+67207091 | None:intergenic |
| TCAGTATATTCACTCCAAGT+GGG | 0.576960 | 1.4:-67208245 | MS.gene005243:CDS |
| CCATGTCACGCATATTGAAG+TGG | 0.579596 | 1.4:+67208101 | None:intergenic |
| TCAGTTTCGTTATACTCCTG+AGG | 0.580321 | 1.4:-67210684 | MS.gene005243:CDS |
| ATCCCTCTCCATATGACCAA+CGG | 0.581919 | 1.4:+67208636 | None:intergenic |
| GAGCTTAATCAGTTCATGAA+AGG | 0.583987 | 1.4:-67208400 | MS.gene005243:CDS |
| TCTGAGGCGAAAGAATCTCA+TGG | 0.584354 | 1.4:-67207310 | MS.gene005243:CDS |
| AGGCCCTAGATTGCTTAGAT+GGG | 0.584394 | 1.4:-67208566 | MS.gene005243:CDS |
| CAGTTTCGTTATACTCCTGA+GGG | 0.586149 | 1.4:-67210683 | MS.gene005243:CDS |
| TTACGTTGCAAGAGATCAGA+CGG | 0.587601 | 1.4:-67210962 | MS.gene005243:CDS |
| GTCTCTGAGATAACACATCC+TGG | 0.589092 | 1.4:-67207109 | MS.gene005243:CDS |
| TTGCATATACCACGACATGC+AGG | 0.589840 | 1.4:+67209785 | None:intergenic |
| AAGTTTATTCTAGTGCTGAA+GGG | 0.589902 | 1.4:-67207174 | MS.gene005243:CDS |
| TACTCCTTGCAGAATGATGT+AGG | 0.592717 | 1.4:-67208190 | MS.gene005243:CDS |
| TTCATGAAAGGATATTCTGA+GGG | 0.593307 | 1.4:-67208388 | MS.gene005243:CDS |
| GTTCATGAAAGGATATTCTG+AGG | 0.596831 | 1.4:-67208389 | MS.gene005243:CDS |
| GAAACATCACCACCATCACC+AGG | 0.597406 | 1.4:+67210623 | None:intergenic |
| GCATTCAATCCGGTTTCTGG+CGG | 0.597782 | 1.4:+67208834 | None:intergenic |
| AATGATGCAGAAAACTTCCA+AGG | 0.598171 | 1.4:-67207335 | MS.gene005243:CDS |
| ACCCGTTGGTCATATGGAGA+GGG | 0.598806 | 1.4:-67208638 | MS.gene005243:CDS |
| CCACTTCAATATGCGTGACA+TGG | 0.599895 | 1.4:-67208101 | MS.gene005243:intron |
| CAACCACCATACTCCTTAGG+GGG | 0.601096 | 1.4:+67208969 | None:intergenic |
| TCATTCTGCAAGGAGTAATG+AGG | 0.601452 | 1.4:+67208196 | None:intergenic |
| TCGTCGGCAGGATGTTCCAA+AGG | 0.604219 | 1.4:-67207068 | MS.gene005243:CDS |
| ACAAATCATATGAACAACTT+GGG | 0.604994 | 1.4:+67209135 | None:intergenic |
| TCGGTGGATCTGCTTTACCA+CGG | 0.605495 | 1.4:+67209548 | None:intergenic |
| TTATTAACCGCAGTTGAAAG+CGG | 0.605534 | 1.4:+67210770 | None:intergenic |
| TTGCCAATATTCTCAAAGAG+AGG | 0.607506 | 1.4:-67208802 | MS.gene005243:CDS |
| GTGCTGAAATAGATCTTCCA+AGG | 0.608035 | 1.4:-67209355 | MS.gene005243:CDS |
| CTTCAAAACATTGTTCTCGG+TGG | 0.612877 | 1.4:+67209532 | None:intergenic |
| GAACTTGAAAAGAAGTTGCG+TGG | 0.615531 | 1.4:-67209507 | MS.gene005243:intron |
| GACCCGTTGGTCATATGGAG+AGG | 0.616214 | 1.4:-67208639 | MS.gene005243:CDS |
| AACAACATCGATGAGAATGT+AGG | 0.616860 | 1.4:-67210998 | MS.gene005243:CDS |
| CGGGAAGCAATGGAGATGCA+CGG | 0.618505 | 1.4:-67210942 | MS.gene005243:CDS |
| ATGCAGACGAGCAGATGTGC+TGG | 0.619215 | 1.4:-67209322 | MS.gene005243:intron |
| GGTCATTTGAACAGAATTTG+GGG | 0.627008 | 1.4:-67205783 | MS.gene005243:CDS |
| GAAAACTTCCAAGGAATCTG+AGG | 0.629615 | 1.4:-67207326 | MS.gene005243:CDS |
| AATGTTTCCAATCCTGGTGA+TGG | 0.631023 | 1.4:-67210635 | MS.gene005243:CDS |
| CCTAAGTAGGAGTGGAGCCG+TGG | 0.632167 | 1.4:-67205804 | MS.gene005243:intron |
| CAGTATATTCACTCCAAGTG+GGG | 0.634348 | 1.4:-67208244 | MS.gene005243:CDS |
| GTTTCCAATCCTGGTGATGG+TGG | 0.634679 | 1.4:-67210632 | MS.gene005243:CDS |
| TGGTGATGTTTCGCCTGATG+AGG | 0.636779 | 1.4:-67210612 | MS.gene005243:CDS |
| GGGTCCTACATCATTCTGCA+AGG | 0.637443 | 1.4:+67208186 | None:intergenic |
| TACGTTGCAAGAGATCAGAC+GGG | 0.638785 | 1.4:-67210961 | MS.gene005243:CDS |
| GGCAGACTTGCCATCAGTGT+AGG | 0.638906 | 1.4:-67210022 | MS.gene005243:CDS |
| AAGATATGTCCTGCATGTCG+TGG | 0.639689 | 1.4:-67209794 | MS.gene005243:CDS |
| GGAATGTTCTAATGGAACAT+CGG | 0.641880 | 1.4:-67210066 | MS.gene005243:CDS |
| AGATTCGACTATGGATCAAG+GGG | 0.642791 | 1.4:-67207200 | MS.gene005243:CDS |
| TTCAGGAGATAAGAAATCAA+GGG | 0.645711 | 1.4:+67204715 | None:intergenic |
| ATCAAGGGCCAACTGAACAG+TGG | 0.650563 | 1.4:+67204730 | None:intergenic |
| ATTACTGATGAACTTGGCAG+AGG | 0.660755 | 1.4:-67208142 | MS.gene005243:CDS |
| ACGAGAAAATGTCTAAGCAG+AGG | 0.664650 | 1.4:-67204177 | MS.gene005243:CDS |
| TGCCTTAAGTGTGATAGGAG+AGG | 0.665509 | 1.4:-67209975 | MS.gene005243:CDS |
| AGATTGCTTAGATGGGTCTG+AGG | 0.669530 | 1.4:-67208559 | MS.gene005243:intron |
| TTGGCATGTTTAGAACACAC+TGG | 0.670083 | 1.4:-67208722 | MS.gene005243:CDS |
| ATCAAACAACTTCTTCCCAG+AGG | 0.671096 | 1.4:+67210721 | None:intergenic |
| GCTCTCGTCAGTGCTTCCCG+TGG | 0.671203 | 1.4:-67209565 | MS.gene005243:CDS |
| ACAACCACCATACTCCTTAG+GGG | 0.682823 | 1.4:+67208968 | None:intergenic |
| GTCATTTGAACAGAATTTGG+GGG | 0.688931 | 1.4:-67205782 | MS.gene005243:CDS |
| AACCACCATACTCCTTAGGG+GGG | 0.689614 | 1.4:+67208970 | None:intergenic |
| AAATTCTGTTCAAATGACCA+CGG | 0.699975 | 1.4:+67205787 | None:intergenic |
| TTGTCATTGGATCTCCAGAG+AGG | 0.708927 | 1.4:+67209008 | None:intergenic |
| TGAGGCGAAAGAATCTCATG+GGG | 0.720209 | 1.4:-67207308 | MS.gene005243:CDS |
| AGAAATTCTTCAGATGCACG+AGG | 0.725683 | 1.4:+67208310 | None:intergenic |
| TGCAGAACGAGTGATGCTGA+TGG | 0.725688 | 1.4:-67208858 | MS.gene005243:CDS |
| TCATGAAAGGATATTCTGAG+GGG | 0.735188 | 1.4:-67208387 | MS.gene005243:CDS |
| GTGATAGCTGCATATCAACA+TGG | 0.743497 | 1.4:-67209947 | MS.gene005243:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67204159 | 67211041 | 67204159 | ID=MS.gene005243 |
| chr1.4 | mRNA | 67204159 | 67211041 | 67204159 | ID=MS.gene005243.t1;Parent=MS.gene005243 |
| chr1.4 | exon | 67210502 | 67211041 | 67210502 | ID=MS.gene005243.t1.exon1;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67210502 | 67211041 | 67210502 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67209948 | 67210087 | 67209948 | ID=MS.gene005243.t1.exon2;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67209948 | 67210087 | 67209948 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67209748 | 67209847 | 67209748 | ID=MS.gene005243.t1.exon3;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67209748 | 67209847 | 67209748 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67209508 | 67209640 | 67209508 | ID=MS.gene005243.t1.exon4;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67209508 | 67209640 | 67209508 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67209323 | 67209377 | 67209323 | ID=MS.gene005243.t1.exon5;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67209323 | 67209377 | 67209323 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67208560 | 67209199 | 67208560 | ID=MS.gene005243.t1.exon6;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67208560 | 67209199 | 67208560 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67208102 | 67208431 | 67208102 | ID=MS.gene005243.t1.exon7;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67208102 | 67208431 | 67208102 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67207015 | 67207419 | 67207015 | ID=MS.gene005243.t1.exon8;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67207015 | 67207419 | 67207015 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67206826 | 67206898 | 67206826 | ID=MS.gene005243.t1.exon9;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67206826 | 67206898 | 67206826 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67205732 | 67205817 | 67205732 | ID=MS.gene005243.t1.exon10;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67205732 | 67205817 | 67205732 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67204634 | 67204753 | 67204634 | ID=MS.gene005243.t1.exon11;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67204634 | 67204753 | 67204634 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67204412 | 67204482 | 67204412 | ID=MS.gene005243.t1.exon12;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67204412 | 67204482 | 67204412 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| chr1.4 | exon | 67204159 | 67204258 | 67204159 | ID=MS.gene005243.t1.exon13;Parent=MS.gene005243.t1 |
| chr1.4 | CDS | 67204159 | 67204258 | 67204159 | ID=cds.MS.gene005243.t1;Parent=MS.gene005243.t1 |
| Gene Sequence |
| Protein sequence |