AlfalfaGEDB | MS.gene00525

M. sativa cultivar XinJiangDaYe / MS.gene00525

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00525.t1	KEH40004.1	80.7	145	28	0	1	145	1	145	3.60E-48	201.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00525.t1	A0A072VDB1	80.7	145	28	0	1	145	1	145	2.6e-48	201.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00525.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00525.t1	MTR_1g017570	97.241	145	4	0	1	145	1	145	1.28e-101	287
MS.gene00525.t1	MTR_3g103360	58.333	144	56	2	1	144	1	140	7.77e-50	156
MS.gene00525.t1	MTR_4g097440	47.154	123	47	3	22	128	23	143	8.44e-20	80.9
MS.gene00525.t1	MTR_5g015090	45.082	122	51	3	31	139	22	140	5.91e-18	75.9
MS.gene00525.t1	MTR_8g086020	41.584	101	53	2	45	143	18	114	1.11e-14	67.4
MS.gene00525.t1	MTR_1g087040	37.273	110	62	2	34	143	4	106	1.64e-13	63.9
MS.gene00525.t1	MTR_1g022495	41.111	90	51	1	35	124	7	94	2.37e-12	61.2
MS.gene00525.t1	MTR_3g117120	43.902	82	44	1	43	124	15	94	2.61e-12	60.8
MS.gene00525.t1	MTR_4g070860	43.750	80	43	1	45	124	17	94	3.11e-12	60.8
MS.gene00525.t1	MTR_7g029400	44.156	77	43	0	59	135	83	159	1.52e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00525.t1	AT3G49760	38.849	139	77	2	9	139	13	151	1.26e-20	82.8
MS.gene00525.t1	AT2G22850	45.783	83	45	0	57	139	126	208	2.25e-15	70.5
MS.gene00525.t1	AT2G22850	45.783	83	45	0	57	139	126	208	2.25e-15	70.5
MS.gene00525.t1	AT2G18160	43.750	80	45	0	45	124	16	95	5.69e-14	65.9
MS.gene00525.t1	AT1G75390	41.667	84	49	0	45	128	26	109	3.21e-13	63.9
MS.gene00525.t1	AT4G37730	51.471	68	33	0	57	124	194	261	3.83e-13	65.5
MS.gene00525.t1	AT1G75390	41.463	82	48	0	43	124	24	105	9.87e-13	61.2
MS.gene00525.t1	AT1G59530	39.344	122	68	2	18	139	14	129	9.91e-12	59.3
MS.gene00525.t1	AT5G15830	38.835	103	59	2	26	128	44	142	9.92e-12	60.1

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Find 45 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAGAATGCAATCAAACC+GGG	0.631263	1.2:+5302650	MS.gene00525:CDS
AATCAAACCGGGAGTCGGCT+AGG	0.560261	1.2:+5302661	MS.gene00525:CDS
AATGCAATCAAACCGGGAGT+CGG	0.621410	1.2:+5302656	MS.gene00525:CDS
ACCGGTTCAAATCGTTCGTG+AGG	0.594738	1.2:-5302719	None:intergenic
ACCGGTTGAGAATGGAAAAC+CGG	0.420192	1.2:+5302736	MS.gene00525:CDS
ACCTCACGAACGATTTGAAC+CGG	0.459693	1.2:+5302718	MS.gene00525:CDS
ACGACTTGATCCTTGTGAAC+CGG	0.478619	1.2:-5302598	None:intergenic
AGCAATGTCCTTCCATGAAG+AGG	0.590028	1.2:+5302461	None:intergenic
AGTCCAGGGTCCGGTTCACA+AGG	0.591544	1.2:+5302588	MS.gene00525:CDS
AGTCGGCTAGGCGGTCACGT+TGG	0.676204	1.2:+5302673	MS.gene00525:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGGAGAATGCAATCAAAC+CGG	+	chr1.2:5302649-5302668	MS.gene00525:CDS	35.0%
AAGGAGAATGCAATCAAACC+GGG	+	chr1.2:5302650-5302669	MS.gene00525:CDS	40.0%
ATCAGAATCAATGTCCCTCA+TGG	+	chr1.2:5302830-5302849	MS.gene00525:CDS	40.0%
CAACCCGTGAGAGAAAAATA+AGG	+	chr1.2:5302631-5302650	MS.gene00525:CDS	40.0%
CATGAAACCATGTTCACACA+AGG	+	chr1.2:5302516-5302535	MS.gene00525:CDS	40.0%
GGGAACTAAAAAACCAGCTA+GGG	+	chr1.2:5302757-5302776	MS.gene00525:CDS	40.0%
GTGAACATGGTTTCATGAAC+CGG	-	chr1.2:5302513-5302532	None:intergenic	40.0%
TATTTCGCCTTGTGTGAACA+TGG	-	chr1.2:5302526-5302545	None:intergenic	40.0%
AATGCAATCAAACCGGGAGT+CGG	+	chr1.2:5302656-5302675	MS.gene00525:CDS	45.0%
ACCGGTTGAGAATGGAAAAC+CGG	+	chr1.2:5302736-5302755	MS.gene00525:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	5302465	5302902	5302465	ID=MS.gene00525
chr1.2	mRNA	5302465	5302902	5302465	ID=MS.gene00525.t1;Parent=MS.gene00525
chr1.2	exon	5302465	5302902	5302465	ID=MS.gene00525.t1.exon1;Parent=MS.gene00525.t1
chr1.2	CDS	5302465	5302902	5302465	ID=cds.MS.gene00525.t1;Parent=MS.gene00525.t1

Gene Sequence

>MS.gene00525

ATGTCCTTCCATGAAGAGGAGTATCCGGTCCGGCTCACGTGTGTTCCGGTTCATGAAACCATGTTCACACAAGGCGAAATAGAGGAGTTATTTTCCCTCATTAACCAACCGGTTGATCCATCCAGTCCAGGGTCCGGTTCACAAGGATCAAGTCGTGCGGTTTACTCAACCCGTGAGAGAAAAATAAGGAGAATGCAATCAAACCGGGAGTCGGCTAGGCGGTCACGTTGGAGAAAGAAGCGGCACGTAGAGAACCTCACGAACGATTTGAACCGGTTGAGAATGGAAAACCGGGAACTAAAAAACCAGCTAGGGTTAACCATGCAATACAATCTCATATTATCAACGGAGAATGAACGTCTAAGATCAGAATCAATGTCCCTCATGGCAACACTTTTGGATCTATATCGGACTTTAGAGACAATAATTTCACAATAG

Protein sequence

>MS.gene00525.t1

MSFHEEEYPVRLTCVPVHETMFTQGEIEELFSLINQPVDPSSPGSGSQGSSRAVYSTRERKIRRMQSNRESARRSRWRKKRHVENLTNDLNRLRMENRELKNQLGLTMQYNLILSTENERLRSESMSLMATLLDLYRTLETIISQ