AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005283

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005283.t1 MTR_1g083630 86.207 87 12 0 2 88 4 90 2.29e-47 159
MS.gene005283.t1 MTR_8g042410 65.823 79 27 0 10 88 37 115 6.10e-31 114
MS.gene005283.t1 MTR_3g052450 60.241 83 33 0 6 88 36 118 1.71e-30 112
MS.gene005283.t1 MTR_3g052430 63.291 79 29 0 10 88 41 119 1.73e-30 112
MS.gene005283.t1 MTR_1g021230 62.025 79 30 0 10 88 57 135 1.18e-28 106
MS.gene005283.t1 MTR_3g011610 59.494 79 32 0 10 88 37 115 1.46e-28 107
MS.gene005283.t1 MTR_2g088170 61.728 81 31 0 8 88 27 107 1.74e-26 100
MS.gene005283.t1 MTR_1g076150 51.899 79 38 0 10 88 12 90 4.20e-26 97.1
MS.gene005283.t1 MTR_7g115650 49.367 79 40 0 10 88 12 90 1.23e-25 94.7
MS.gene005283.t1 MTR_8g027345 50.633 79 39 0 10 88 12 90 2.98e-25 95.9
MS.gene005283.t1 MTR_1g043080 49.367 79 40 0 10 88 12 90 5.99e-25 94.0
MS.gene005283.t1 MTR_4g478180 49.398 83 42 0 6 88 9 91 7.94e-25 95.5
MS.gene005283.t1 MTR_1g073170 52.381 84 40 0 9 92 19 102 2.23e-24 92.8
MS.gene005283.t1 MTR_2g089620 46.988 83 44 0 6 88 8 90 4.26e-24 93.2
MS.gene005283.t1 MTR_7g035075 51.899 79 38 0 10 88 14 92 4.57e-24 90.9
MS.gene005283.t1 MTR_7g096930 49.367 79 40 0 10 88 12 90 4.77e-24 92.0
MS.gene005283.t1 MTR_3g074520 48.193 83 43 0 6 88 8 90 5.52e-24 93.2
MS.gene005283.t1 MTR_7g076740 48.810 84 42 1 6 88 8 91 6.58e-24 92.4
MS.gene005283.t1 MTR_2g095520 51.190 84 40 1 6 88 8 91 6.77e-24 92.4
MS.gene005283.t1 MTR_7g117730 46.835 79 42 0 10 88 12 90 7.03e-24 91.3
MS.gene005283.t1 MTR_1g045610 52.439 82 39 0 11 92 22 103 7.93e-24 91.3
MS.gene005283.t1 MTR_5g062790 54.430 79 35 1 11 88 10 88 8.91e-24 92.0
MS.gene005283.t1 MTR_4g082230 49.383 81 41 0 8 88 10 90 1.30e-23 92.8
MS.gene005283.t1 MTR_6g009430 51.807 83 40 0 6 88 8 90 1.85e-23 91.7
MS.gene005283.t1 MTR_1g043050 48.101 79 41 0 10 88 12 90 2.30e-23 90.1
MS.gene005283.t1 MTR_6g006030 51.899 79 38 0 10 88 14 92 2.74e-23 89.0
MS.gene005283.t1 MTR_2g011660 48.101 79 41 0 10 88 13 91 2.88e-23 91.3
MS.gene005283.t1 MTR_5g014990 51.190 84 40 1 6 88 8 91 3.56e-23 90.5
MS.gene005283.t1 MTR_1g086530 49.398 83 42 0 6 88 29 111 3.73e-23 89.7
MS.gene005283.t1 MTR_4g057635 48.810 84 42 1 6 88 8 91 5.03e-23 90.1
MS.gene005283.t1 MTR_4g097570 50.000 84 41 1 6 88 8 91 5.24e-23 89.7
MS.gene005283.t1 MTR_7g102110 50.588 85 41 1 5 88 7 91 6.18e-23 89.4
MS.gene005283.t1 MTR_5g007370 46.988 83 44 0 6 88 8 90 6.60e-23 89.7
MS.gene005283.t1 MTR_4g128670 52.381 84 39 1 6 88 8 91 7.67e-23 90.1
MS.gene005283.t1 MTR_4g091490 46.250 80 43 0 10 89 13 92 7.96e-23 90.1
MS.gene005283.t1 MTR_1g017140 51.190 84 40 1 6 88 8 91 8.59e-23 89.7
MS.gene005283.t1 MTR_3g083540 46.835 79 42 0 10 88 41 119 9.44e-23 89.4
MS.gene005283.t1 MTR_5g079120 48.101 79 41 0 10 88 61 139 9.52e-23 89.4
MS.gene005283.t1 MTR_5g088080 52.439 82 38 1 8 88 10 91 1.08e-22 88.6
MS.gene005283.t1 MTR_5g088150 52.439 82 38 1 8 88 10 91 1.08e-22 88.6
MS.gene005283.t1 MTR_5g488210 52.439 82 38 1 8 88 10 91 1.08e-22 88.6
MS.gene005283.t1 MTR_5g029840 46.429 84 45 0 5 88 7 90 1.12e-22 89.4
MS.gene005283.t1 MTR_5g088640 52.439 82 38 1 8 88 10 91 1.14e-22 88.6
MS.gene005283.t1 MTR_5g488170 52.439 82 38 1 8 88 10 91 1.16e-22 87.8
MS.gene005283.t1 MTR_2g067420 48.193 83 43 0 6 88 10 92 1.26e-22 89.4
MS.gene005283.t1 MTR_4g082290 49.367 79 40 0 10 88 12 90 1.30e-22 90.1
MS.gene005283.t1 MTR_6g090405 49.412 85 42 1 5 88 7 91 1.33e-22 88.2
MS.gene005283.t1 MTR_6g012690 48.193 83 43 0 6 88 8 90 1.34e-22 89.4
MS.gene005283.t1 MTR_6g012180 46.988 83 44 0 6 88 8 90 1.53e-22 89.0
MS.gene005283.t1 MTR_4g121460 49.367 79 40 0 10 88 12 90 1.77e-22 89.0
MS.gene005283.t1 MTR_1g086510 48.148 81 42 0 8 88 19 99 1.82e-22 87.8
MS.gene005283.t1 MTR_0063s0090 49.398 83 42 0 6 88 8 90 1.95e-22 87.0
MS.gene005283.t1 MTR_1g017000 48.810 84 42 1 6 88 8 91 2.15e-22 87.4
MS.gene005283.t1 MTR_4g125520 46.835 79 42 0 10 88 12 90 2.57e-22 88.2
MS.gene005283.t1 MTR_8g031360 45.679 81 43 1 10 89 13 93 2.80e-22 87.8
MS.gene005283.t1 MTR_1g110460 44.578 83 46 0 6 88 22 104 2.91e-22 88.2
MS.gene005283.t1 MTR_1g085640 50.000 80 40 0 9 88 11 90 4.12e-22 88.6
MS.gene005283.t1 MTR_7g011170 48.101 79 41 0 10 88 12 90 5.02e-22 87.4
MS.gene005283.t1 MTR_3g103570 50.000 84 41 1 6 88 8 91 6.13e-22 87.8
MS.gene005283.t1 MTR_7g111290 47.500 80 42 0 9 88 11 90 6.84e-22 87.8
MS.gene005283.t1 MTR_7g010210 46.429 84 45 0 5 88 7 90 7.31e-22 86.3
MS.gene005283.t1 MTR_7g010210 46.988 83 44 0 6 88 8 90 1.05e-21 86.7
MS.gene005283.t1 MTR_0140s0030 48.101 79 41 0 10 88 13 91 1.13e-21 86.7
MS.gene005283.t1 MTR_0489s0020 48.101 79 41 0 10 88 13 91 1.13e-21 86.7
MS.gene005283.t1 MTR_2g034790 49.367 79 40 0 10 88 12 90 1.35e-21 86.7
MS.gene005283.t1 MTR_0008s0470 48.101 79 41 0 10 88 13 91 2.20e-21 85.5
MS.gene005283.t1 MTR_5g042030 46.835 79 42 0 10 88 7 85 2.24e-21 85.5
MS.gene005283.t1 MTR_4g097570 49.412 85 41 2 6 88 8 92 2.27e-21 85.5
MS.gene005283.t1 MTR_7g110830 47.500 80 42 0 9 88 11 90 3.69e-21 85.9
MS.gene005283.t1 MTR_5g079670 42.857 84 48 0 5 88 6 89 4.00e-21 83.2
MS.gene005283.t1 MTR_4g073420 48.052 77 40 0 12 88 14 90 4.94e-21 84.3
MS.gene005283.t1 MTR_8g060940 44.578 83 46 0 6 88 3 85 7.46e-21 83.2
MS.gene005283.t1 MTR_1g085040 47.500 80 42 0 9 88 11 90 7.86e-21 84.7
MS.gene005283.t1 MTR_4g065017 46.250 80 43 0 9 88 16 95 8.58e-21 84.3
MS.gene005283.t1 MTR_1g100653 43.038 79 45 0 10 88 12 90 8.71e-21 84.0
MS.gene005283.t1 MTR_8g095390 49.351 77 39 0 12 88 14 90 9.13e-21 84.0
MS.gene005283.t1 MTR_2g099740 45.000 80 44 0 9 88 11 90 9.18e-21 84.7
MS.gene005283.t1 MTR_0008s0390 48.101 79 41 0 10 88 13 91 9.83e-21 83.6
MS.gene005283.t1 MTR_4g102380 45.238 84 46 0 5 88 7 90 1.58e-20 82.8
MS.gene005283.t1 MTR_7g087130 48.101 79 41 0 10 88 12 90 1.71e-20 83.6
MS.gene005283.t1 MTR_3g039990 45.570 79 43 0 10 88 13 91 1.90e-20 83.2
MS.gene005283.t1 MTR_5g010020 45.679 81 44 0 9 89 11 91 2.00e-20 83.6
MS.gene005283.t1 MTR_4g063100 45.122 82 45 0 11 92 8 89 2.23e-20 82.0
MS.gene005283.t1 MTR_5g078910 43.902 82 46 0 7 88 4 85 3.06e-20 82.4
MS.gene005283.t1 MTR_3g065440 44.048 84 47 0 5 88 7 90 3.46e-20 82.4
MS.gene005283.t1 MTR_0001s0360 45.570 79 43 0 10 88 7 85 4.20e-20 81.3
MS.gene005283.t1 MTR_0251s0050 46.835 79 42 0 10 88 13 91 4.44e-20 81.6
MS.gene005283.t1 MTR_0008s0280 49.398 83 42 0 6 88 8 90 4.72e-20 80.9
MS.gene005283.t1 MTR_8g017540 45.000 80 44 0 9 88 57 136 4.74e-20 82.8
MS.gene005283.t1 MTR_8g017500 45.000 80 44 0 9 88 11 90 5.57e-20 82.4
MS.gene005283.t1 MTR_0247s0040 41.667 84 49 0 5 88 2 85 5.60e-20 79.7
MS.gene005283.t1 MTR_8g006470 44.048 84 46 1 6 88 6 89 6.19e-20 81.6
MS.gene005283.t1 MTR_2g089450 45.238 84 46 0 5 88 7 90 6.79e-20 80.9
MS.gene005283.t1 MTR_8g020490 48.101 79 41 0 10 88 8 86 7.07e-20 80.9
MS.gene005283.t1 MTR_5g078140 44.048 84 47 0 5 88 7 90 7.18e-20 81.6
MS.gene005283.t1 MTR_8g017440 43.750 80 45 0 9 88 11 90 7.22e-20 82.0
MS.gene005283.t1 MTR_5g007300 45.455 77 42 0 10 86 64 140 8.37e-20 78.2
MS.gene005283.t1 MTR_5g088610 46.067 89 47 1 5 92 4 92 8.55e-20 82.0
MS.gene005283.t1 MTR_3g077110 43.750 80 45 0 9 88 11 90 1.10e-19 81.6
MS.gene005283.t1 MTR_1g112760 43.750 80 45 0 9 88 12 91 1.88e-19 79.3
MS.gene005283.t1 MTR_3g097450 45.455 77 42 0 12 88 14 90 1.95e-19 80.5
MS.gene005283.t1 MTR_0193s0090 40.476 84 50 0 5 88 2 85 2.10e-19 78.6
MS.gene005283.t1 MTR_4g105130 42.500 80 46 0 9 88 11 90 2.20e-19 80.9
MS.gene005283.t1 MTR_8g098860 43.210 81 46 0 9 89 11 91 2.37e-19 80.5
MS.gene005283.t1 MTR_2g089420 43.373 83 47 0 6 88 7 89 2.58e-19 81.3
MS.gene005283.t1 MTR_6g027340 41.860 86 49 1 7 92 11 95 2.59e-19 78.6
MS.gene005283.t1 MTR_7g017260 42.353 85 47 1 6 88 21 105 2.76e-19 79.7
MS.gene005283.t1 MTR_3g028740 40.964 83 49 0 6 88 18 100 2.96e-19 80.5
MS.gene005283.t1 MTR_5g078860 46.835 79 42 0 10 88 7 85 3.34e-19 79.7
MS.gene005283.t1 MTR_4g029540 46.250 80 42 1 10 88 10 89 3.69e-19 79.7
MS.gene005283.t1 MTR_2g096380 43.373 83 47 0 10 92 6 88 3.96e-19 78.6
MS.gene005283.t1 MTR_5g078950 44.048 84 46 1 6 88 2 85 4.07e-19 79.0
MS.gene005283.t1 MTR_5g079290 42.683 82 47 0 7 88 14 95 4.51e-19 79.0
MS.gene005283.t1 MTR_2g097910 44.304 79 44 0 10 88 20 98 5.01e-19 79.3
MS.gene005283.t1 MTR_1g062940 48.193 83 43 0 10 92 6 88 5.23e-19 77.8
MS.gene005283.t1 MTR_5g078800 42.683 82 47 0 7 88 4 85 6.39e-19 78.6
MS.gene005283.t1 MTR_5g079220 42.683 82 47 0 7 88 18 99 7.28e-19 78.6
MS.gene005283.t1 MTR_4g100720 41.176 85 50 0 4 88 7 91 1.04e-18 76.3
MS.gene005283.t1 MTR_2g064160 43.750 80 45 0 9 88 10 89 1.71e-18 77.8
MS.gene005283.t1 MTR_6g055910 44.444 81 45 0 8 88 12 92 2.43e-18 77.0
MS.gene005283.t1 MTR_6g027360 40.698 86 50 1 7 92 73 157 2.51e-18 77.4
MS.gene005283.t1 MTR_2g033170 46.988 83 44 0 6 88 20 102 2.58e-18 77.8
MS.gene005283.t1 MTR_1g100667 46.154 78 42 0 11 88 14 91 5.73e-18 75.9
MS.gene005283.t1 MTR_5g078930 41.026 78 46 0 11 88 10 87 8.65e-18 74.7
MS.gene005283.t1 MTR_4g485530 42.857 77 44 0 12 88 14 90 9.20e-18 73.9
MS.gene005283.t1 MTR_0197s0010 47.297 74 39 0 15 88 6 79 9.62e-18 74.7
MS.gene005283.t1 MTR_3g461490 44.304 79 44 0 10 88 12 90 1.10e-17 75.9
MS.gene005283.t1 MTR_8g017350 41.975 81 46 1 9 88 11 91 1.43e-17 76.3
MS.gene005283.t1 MTR_5g016510 44.444 81 44 1 12 92 5 84 1.44e-17 75.5
MS.gene005283.t1 MTR_8g017340 41.975 81 46 1 9 88 11 91 1.48e-17 76.3
MS.gene005283.t1 MTR_7g109320 49.367 79 40 0 10 88 12 90 1.62e-17 75.5
MS.gene005283.t1 MTR_4g019370 46.914 81 42 1 12 92 38 117 2.92e-17 75.1
MS.gene005283.t1 MTR_8g017390 41.975 81 46 1 9 88 11 91 3.56e-17 75.1
MS.gene005283.t1 MTR_4g123040 44.318 88 49 0 1 88 15 102 7.30e-17 73.6
MS.gene005283.t1 MTR_3g101290 41.975 81 46 1 12 92 37 116 7.56e-17 72.4
MS.gene005283.t1 MTR_5g041570 41.860 86 49 1 7 92 129 213 1.46e-16 73.2
MS.gene005283.t1 MTR_0023s0210 41.333 75 44 0 6 80 3 77 2.59e-16 67.8
MS.gene005283.t1 MTR_1g085880 52.747 91 40 3 1 88 1 91 4.05e-16 69.7
MS.gene005283.t1 MTR_4g082040 43.210 81 45 1 12 92 105 184 6.16e-16 71.6
MS.gene005283.t1 MTR_4g094982 43.210 81 45 1 12 92 5 84 1.29e-15 69.7
MS.gene005283.t1 MTR_4g128190 45.556 90 34 4 1 88 1 77 1.34e-15 69.3
MS.gene005283.t1 MTR_1g085770 52.747 91 40 3 1 88 1 91 1.45e-15 70.1
MS.gene005283.t1 MTR_6g074860 42.857 77 43 1 12 88 4 79 2.15e-15 68.9
MS.gene005283.t1 MTR_6g015455 43.210 81 45 1 12 92 5 84 2.35e-15 70.1
MS.gene005283.t1 MTR_5g070020 46.835 79 41 1 10 88 120 197 4.14e-15 68.9
MS.gene005283.t1 MTR_3g089045 41.379 87 50 1 2 88 6 91 5.63e-15 68.2
MS.gene005283.t1 MTR_3g463400 43.038 79 44 1 10 88 131 208 6.27e-15 68.6
MS.gene005283.t1 MTR_5g082910 43.210 81 45 1 12 92 19 98 8.05e-15 67.8
MS.gene005283.t1 MTR_1g026870 41.772 79 45 1 10 88 83 160 1.06e-14 68.2
MS.gene005283.t1 MTR_6g027370 42.857 77 43 1 12 88 99 174 2.99e-14 66.6
MS.gene005283.t1 MTR_3g110028 38.554 83 50 1 10 92 83 164 4.90e-14 66.2
MS.gene005283.t1 MTR_4g105660 39.506 81 48 1 8 88 176 255 6.03e-14 65.9
MS.gene005283.t1 MTR_3g045430 41.772 79 46 0 10 88 13 91 1.89e-13 63.9
MS.gene005283.t1 MTR_5g049190 38.750 80 48 1 8 87 15 93 3.34e-13 62.8
MS.gene005283.t1 MTR_7g111290 55.556 45 20 0 44 88 4 48 3.54e-13 63.5
MS.gene005283.t1 MTR_7g451170 40.741 81 47 1 12 92 191 270 7.00e-13 62.8
MS.gene005283.t1 MTR_7g061550 41.333 75 42 1 15 87 10 84 9.48e-13 62.4
MS.gene005283.t1 MTR_7g086960 44.444 81 44 1 12 92 89 168 1.32e-12 62.0
MS.gene005283.t1 MTR_3g077650 37.662 77 47 1 12 88 181 256 2.14e-12 61.6
MS.gene005283.t1 MTR_4g063100 53.061 49 23 0 44 92 12 60 4.89e-12 59.7
MS.gene005283.t1 MTR_4g088015 38.961 77 46 1 12 88 221 296 6.44e-12 60.1
MS.gene005283.t1 MTR_7g037130 41.975 81 46 1 12 92 145 224 1.64e-11 58.9
MS.gene005283.t1 MTR_7g061330 41.772 79 45 1 10 88 75 152 1.67e-11 58.9
MS.gene005283.t1 MTR_7g037260 39.506 81 48 1 12 92 145 224 1.95e-11 58.5
MS.gene005283.t1 MTR_7g035350 37.838 74 45 1 15 88 228 300 2.04e-11 58.5
MS.gene005283.t1 MTR_7g061330 41.772 79 45 1 10 88 111 188 2.12e-11 58.5
MS.gene005283.t1 MTR_7g461410 41.772 79 45 1 10 88 111 188 2.12e-11 58.5
MS.gene005283.t1 MTR_7g450950 34.884 86 55 1 7 92 152 236 4.83e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005283.t1 AT5G06100 65.060 83 29 0 6 88 28 110 5.37e-33 118
MS.gene005283.t1 AT5G06100 65.060 83 29 0 6 88 28 110 9.73e-33 118
MS.gene005283.t1 AT5G06100 65.060 83 29 0 6 88 28 110 9.73e-33 118
MS.gene005283.t1 AT5G06100 65.060 83 29 0 6 88 28 110 9.73e-33 118
MS.gene005283.t1 AT5G06100 65.060 83 29 0 6 88 28 110 9.73e-33 118
MS.gene005283.t1 AT2G32460 64.557 79 28 0 10 88 6 84 1.10e-32 118
MS.gene005283.t1 AT2G32460 64.557 79 28 0 10 88 18 96 1.25e-32 118
MS.gene005283.t1 AT3G11440 64.557 79 28 0 10 88 41 119 9.25e-32 115
MS.gene005283.t1 AT3G11440 64.557 79 28 0 10 88 41 119 1.16e-31 115
MS.gene005283.t1 AT3G11440 64.557 79 28 0 10 88 41 119 1.16e-31 115
MS.gene005283.t1 AT3G11440 64.557 79 28 0 10 88 41 119 1.16e-31 115
MS.gene005283.t1 AT4G26930 62.025 79 30 0 10 88 19 97 3.03e-31 113
MS.gene005283.t1 AT5G55020 62.025 79 30 0 10 88 26 104 2.89e-30 112
MS.gene005283.t1 AT3G01530 51.899 79 38 0 10 88 25 103 1.22e-25 94.7
MS.gene005283.t1 AT2G26960 53.165 79 37 0 10 88 20 98 1.70e-25 98.2
MS.gene005283.t1 AT5G40330 51.282 78 38 0 11 88 13 90 6.22e-25 93.2
MS.gene005283.t1 AT5G40350 51.899 79 38 0 10 88 17 95 1.98e-24 92.0
MS.gene005283.t1 AT3G27920 52.564 78 37 0 11 88 15 92 3.50e-24 91.7
MS.gene005283.t1 AT3G23250 48.101 79 41 0 10 88 12 90 4.03e-24 92.4
MS.gene005283.t1 AT5G14750 50.000 78 39 0 11 88 17 94 4.20e-24 90.9
MS.gene005283.t1 AT3G02940 48.810 84 43 0 6 89 8 91 5.65e-24 92.8
MS.gene005283.t1 AT5G16770 47.619 84 44 0 6 89 8 91 6.27e-24 92.8
MS.gene005283.t1 AT5G16770 47.619 84 44 0 6 89 8 91 6.27e-24 92.8
MS.gene005283.t1 AT1G34670 48.193 83 43 0 6 88 8 90 9.03e-24 92.8
MS.gene005283.t1 AT3G27810 50.633 79 39 0 10 88 20 98 9.09e-24 90.5
MS.gene005283.t1 AT3G02940 48.810 84 43 0 6 89 8 91 9.72e-24 92.0
MS.gene005283.t1 AT3G02940 48.810 84 43 0 6 89 8 91 9.72e-24 92.0
MS.gene005283.t1 AT3G49690 53.571 84 38 1 6 88 8 91 1.00e-23 92.0
MS.gene005283.t1 AT5G16770 47.619 84 44 0 6 89 8 91 1.01e-23 92.4
MS.gene005283.t1 AT5G16770 47.619 84 44 0 6 89 8 91 1.01e-23 92.4
MS.gene005283.t1 AT1G79180 46.429 84 45 0 5 88 9 92 1.11e-23 91.7
MS.gene005283.t1 AT4G37780 50.000 84 41 1 6 88 8 91 1.34e-23 91.7
MS.gene005283.t1 AT1G35515 50.633 79 39 0 10 88 12 90 1.38e-23 89.7
MS.gene005283.t1 AT3G01140 49.398 83 42 0 6 88 8 90 1.67e-23 92.0
MS.gene005283.t1 AT2G31180 48.101 79 41 0 10 88 12 90 1.74e-23 90.1
MS.gene005283.t1 AT5G65790 52.381 84 39 1 6 88 8 91 1.74e-23 92.0
MS.gene005283.t1 AT4G21440 48.101 79 41 0 10 88 12 90 1.90e-23 91.7
MS.gene005283.t1 AT3G01140 47.727 88 46 0 1 88 46 133 1.94e-23 92.0
MS.gene005283.t1 AT4G13480 53.659 82 38 0 11 92 7 88 2.27e-23 90.1
MS.gene005283.t1 AT5G57620 51.190 84 40 1 6 88 8 91 3.91e-23 90.9
MS.gene005283.t1 AT5G23000 49.412 85 42 1 5 88 7 91 4.06e-23 90.5
MS.gene005283.t1 AT4G28110 46.988 83 44 0 6 88 8 90 4.71e-23 89.7
MS.gene005283.t1 AT4G09460 49.351 77 39 0 12 88 14 90 4.97e-23 89.0
MS.gene005283.t1 AT5G15310 47.619 84 44 0 5 88 7 90 5.15e-23 89.0
MS.gene005283.t1 AT5G15310 48.193 83 43 0 6 88 8 90 7.77e-23 89.7
MS.gene005283.t1 AT5G15310 48.193 83 43 0 6 88 8 90 8.09e-23 89.7
MS.gene005283.t1 AT3G30210 52.439 82 39 0 11 92 28 109 8.43e-23 89.0
MS.gene005283.t1 AT3G13540 45.570 79 43 0 10 88 23 101 1.15e-22 88.2
MS.gene005283.t1 AT5G10280 46.429 84 45 0 5 88 7 90 1.36e-22 89.4
MS.gene005283.t1 AT5G65230 47.126 87 46 0 2 88 4 90 1.50e-22 89.0
MS.gene005283.t1 AT4G01680 48.750 80 41 0 9 88 11 90 1.51e-22 87.8
MS.gene005283.t1 AT2G36890 51.765 85 40 1 5 88 7 91 1.75e-22 88.6
MS.gene005283.t1 AT3G61250 43.373 83 47 0 6 88 8 90 1.99e-22 88.2
MS.gene005283.t1 AT5G49330 49.367 79 40 0 10 88 12 90 2.45e-22 88.6
MS.gene005283.t1 AT2G36890 52.381 84 39 1 6 88 49 132 3.07e-22 88.6
MS.gene005283.t1 AT5G61420 49.398 83 42 0 10 92 12 94 3.39e-22 88.6
MS.gene005283.t1 AT4G01680 48.750 80 41 0 9 88 11 90 3.58e-22 88.2
MS.gene005283.t1 AT3G28470 45.977 87 47 0 6 92 8 94 3.83e-22 87.8
MS.gene005283.t1 AT5G16600 45.783 83 45 0 6 88 8 90 4.47e-22 87.8
MS.gene005283.t1 AT4G05100 48.101 79 41 0 10 88 13 91 4.56e-22 87.8
MS.gene005283.t1 AT3G24310 51.220 82 40 0 11 92 19 100 4.87e-22 86.7
MS.gene005283.t1 AT5G07700 51.899 79 38 0 10 88 12 90 4.98e-22 87.8
MS.gene005283.t1 AT5G07700 51.899 79 38 0 10 88 12 90 4.98e-22 87.8
MS.gene005283.t1 AT1G22640 46.835 79 42 0 10 88 12 90 5.46e-22 86.7
MS.gene005283.t1 AT1G06180 49.367 79 40 0 10 88 12 90 6.30e-22 86.3
MS.gene005283.t1 AT3G28910 49.367 79 40 0 10 88 12 90 6.61e-22 87.4
MS.gene005283.t1 AT5G59780 47.561 82 43 0 11 92 9 90 9.40e-22 85.5
MS.gene005283.t1 AT1G18570 50.000 84 42 0 10 93 13 96 9.43e-22 87.4
MS.gene005283.t1 AT1G08810 46.429 84 45 0 5 88 7 90 1.17e-21 85.9
MS.gene005283.t1 AT5G35550 45.570 79 43 0 10 88 14 92 1.20e-21 85.5
MS.gene005283.t1 AT1G25340 46.341 82 44 0 11 92 19 100 1.24e-21 85.9
MS.gene005283.t1 AT1G68320 48.101 79 41 0 10 88 19 97 1.33e-21 85.9
MS.gene005283.t1 AT1G16490 44.578 83 46 0 6 88 10 92 1.36e-21 85.9
MS.gene005283.t1 AT1G74650 46.835 79 42 0 10 88 12 90 1.45e-21 86.7
MS.gene005283.t1 AT5G07690 50.633 79 39 0 10 88 12 90 1.82e-21 86.3
MS.gene005283.t1 AT1G09540 50.000 80 40 0 9 88 11 90 2.00e-21 86.7
MS.gene005283.t1 AT3G46130 46.341 82 44 0 11 92 10 91 2.36e-21 84.7
MS.gene005283.t1 AT2G26950 48.148 81 42 0 12 92 18 98 3.37e-21 85.9
MS.gene005283.t1 AT5G26660 47.500 80 42 0 9 88 11 90 4.07e-21 85.5
MS.gene005283.t1 AT2G47460 46.835 79 42 0 10 88 12 90 4.73e-21 85.5
MS.gene005283.t1 AT1G74080 48.193 83 43 0 10 92 12 94 5.66e-21 85.1
MS.gene005283.t1 AT3G62610 46.835 79 42 0 10 88 12 90 5.73e-21 85.1
MS.gene005283.t1 AT5G62470 48.101 79 41 0 10 88 12 90 5.77e-21 85.1
MS.gene005283.t1 AT1G57560 48.750 80 41 0 9 88 11 90 6.43e-21 84.0
MS.gene005283.t1 AT5G14340 45.238 84 46 0 5 88 19 102 6.50e-21 84.0
MS.gene005283.t1 AT1G57560 48.750 80 41 0 9 88 11 90 7.31e-21 84.3
MS.gene005283.t1 AT3G47600 45.783 83 45 0 6 88 8 90 1.25e-20 84.0
MS.gene005283.t1 AT5G54230 44.304 79 44 0 10 88 12 90 1.28e-20 84.0
MS.gene005283.t1 AT3G12820 44.048 84 47 0 5 88 9 92 1.57e-20 82.4
MS.gene005283.t1 AT3G13890 43.750 80 45 0 9 88 11 90 1.61e-20 84.0
MS.gene005283.t1 AT2G16720 44.304 79 44 0 10 88 12 90 1.65e-20 82.8
MS.gene005283.t1 AT1G56160 40.476 84 50 0 5 88 9 92 1.74e-20 83.2
MS.gene005283.t1 AT4G38620 46.753 77 41 0 12 88 14 90 1.91e-20 82.8
MS.gene005283.t1 AT4G22680 44.048 84 47 0 5 88 7 90 4.28e-20 81.6
MS.gene005283.t1 AT1G48000 43.038 79 45 0 10 88 32 110 5.05e-20 81.3
MS.gene005283.t1 AT1G66230 42.857 84 48 0 5 88 7 90 5.15e-20 81.6
MS.gene005283.t1 AT1G18710 42.169 83 48 0 6 88 8 90 5.64e-20 81.3
MS.gene005283.t1 AT1G63910 44.444 81 45 0 9 89 11 91 6.28e-20 82.4
MS.gene005283.t1 AT5G52600 44.304 79 44 0 10 88 12 90 8.63e-20 79.7
MS.gene005283.t1 AT3G60460 42.353 85 48 1 5 88 6 90 9.80e-20 81.3
MS.gene005283.t1 AT5G62470 48.101 79 40 1 10 88 12 89 9.92e-20 81.6
MS.gene005283.t1 AT4G17785 48.101 79 41 0 10 88 13 91 1.41e-19 81.3
MS.gene005283.t1 AT3G12720 43.750 80 45 0 9 88 21 100 1.44e-19 80.9
MS.gene005283.t1 AT4G01680 42.391 92 41 1 9 88 11 102 1.44e-19 81.3
MS.gene005283.t1 AT4G17785 48.101 79 41 0 10 88 13 91 1.56e-19 81.3
MS.gene005283.t1 AT5G12870 43.750 80 45 0 9 88 17 96 1.56e-19 80.5
MS.gene005283.t1 AT5G60890 46.835 79 42 0 10 88 12 90 1.89e-19 80.5
MS.gene005283.t1 AT4G34990 46.753 77 41 0 12 88 14 90 2.46e-19 79.7
MS.gene005283.t1 AT1G74430 42.169 83 48 0 6 88 8 90 3.31e-19 79.3
MS.gene005283.t1 AT2G47190 45.570 79 43 0 10 88 20 98 4.50e-19 79.0
MS.gene005283.t1 AT3G08500 43.750 80 45 0 9 88 29 108 5.16e-19 79.7
MS.gene005283.t1 AT3G53200 43.478 92 51 1 1 92 1 91 6.12e-19 78.2
MS.gene005283.t1 AT4G12350 42.857 84 48 0 5 88 7 90 7.51e-19 78.6
MS.gene005283.t1 AT1G25340 43.902 82 41 1 11 92 19 95 8.41e-19 78.6
MS.gene005283.t1 AT1G25340 43.902 82 41 1 11 92 19 95 1.07e-18 78.6
MS.gene005283.t1 AT5G62320 41.758 91 46 1 5 88 8 98 1.19e-18 77.4
MS.gene005283.t1 AT4G25560 46.250 80 43 0 9 88 9 88 1.90e-18 77.4
MS.gene005283.t1 AT1G66370 43.038 79 45 0 10 88 8 86 1.96e-18 77.0
MS.gene005283.t1 AT3G48920 45.122 82 45 0 11 92 19 100 2.52e-18 77.0
MS.gene005283.t1 AT3G50060 46.914 81 42 1 12 92 6 85 2.61e-18 77.4
MS.gene005283.t1 AT3G13890 38.202 89 46 1 9 88 11 99 6.29e-18 77.0
MS.gene005283.t1 AT1G79180 34.188 117 44 2 5 88 9 125 2.32e-17 75.1
MS.gene005283.t1 AT5G67300 45.679 81 43 1 12 92 6 85 2.87e-17 74.7
MS.gene005283.t1 AT4G37260 44.444 81 44 1 12 92 13 92 3.08e-17 74.7
MS.gene005283.t1 AT3G55730 46.753 77 40 1 12 88 56 131 4.86e-17 74.7
MS.gene005283.t1 AT5G49620 46.835 79 42 0 10 88 26 104 5.92e-17 73.9
MS.gene005283.t1 AT5G56110 41.772 79 46 0 10 88 12 90 7.85e-17 73.6
MS.gene005283.t1 AT1G69560 42.169 83 47 1 10 92 121 202 1.69e-16 72.8
MS.gene005283.t1 AT2G23290 44.444 81 44 1 12 92 13 92 2.31e-16 72.0
MS.gene005283.t1 AT1G69560 42.169 83 47 1 10 92 105 186 2.38e-16 72.4
MS.gene005283.t1 AT3G06490 46.988 83 44 0 6 88 15 97 2.42e-16 72.4
MS.gene005283.t1 AT1G26780 43.373 83 46 1 10 92 96 177 4.27e-16 71.6
MS.gene005283.t1 AT3G09230 46.753 77 40 1 12 88 55 130 4.30e-16 72.0
MS.gene005283.t1 AT1G66380 41.772 79 46 0 10 88 8 86 5.23e-16 68.6
MS.gene005283.t1 AT1G56650 41.772 79 46 0 10 88 8 86 1.30e-15 69.3
MS.gene005283.t1 AT1G66380 44.444 63 35 0 10 72 8 70 1.57e-15 66.2
MS.gene005283.t1 AT1G26780 43.373 83 46 1 10 92 96 177 1.70e-15 69.7
MS.gene005283.t1 AT5G17800 42.697 89 50 1 4 92 85 172 2.06e-15 69.7
MS.gene005283.t1 AT4G33450 39.796 98 51 3 1 92 3 98 2.23e-15 68.9
MS.gene005283.t1 AT1G17950 42.857 77 43 1 12 88 5 80 2.58e-15 68.6
MS.gene005283.t1 AT3G29020 41.558 77 44 1 12 88 65 140 3.84e-15 68.2
MS.gene005283.t1 AT5G49620 46.667 75 40 0 10 84 26 100 6.29e-15 68.6
MS.gene005283.t1 AT3G29020 41.558 77 44 1 12 88 67 142 6.33e-15 68.2
MS.gene005283.t1 AT5G58850 46.835 79 41 1 10 88 103 180 8.94e-15 68.2
MS.gene005283.t1 AT1G66390 41.772 79 46 0 10 88 8 86 9.72e-15 67.0
MS.gene005283.t1 AT5G52260 45.000 80 44 0 9 88 11 90 1.98e-14 66.6
MS.gene005283.t1 AT5G11050 45.455 77 41 1 12 88 105 180 2.34e-14 67.0
MS.gene005283.t1 AT5G40360 40.260 77 45 1 12 88 158 233 3.39e-14 66.6
MS.gene005283.t1 AT5G39700 46.053 76 40 1 13 88 57 131 3.82e-14 64.7
MS.gene005283.t1 AT4G32730 40.506 79 46 1 10 88 85 162 9.91e-14 65.5
MS.gene005283.t1 AT4G32730 40.506 79 46 1 10 88 85 162 9.91e-14 65.5
MS.gene005283.t1 AT4G32730 40.506 79 46 1 10 88 85 162 9.91e-14 65.5
MS.gene005283.t1 AT4G32730 40.506 79 46 1 10 88 85 162 9.91e-14 65.5
MS.gene005283.t1 AT4G18770 38.272 81 49 1 8 88 213 292 1.03e-13 65.1
MS.gene005283.t1 AT2G39880 42.857 77 43 1 12 88 50 125 3.65e-13 63.5
MS.gene005283.t1 AT5G26660 49.020 51 26 0 38 88 9 59 6.35e-13 62.8
MS.gene005283.t1 AT1G73410 43.210 81 45 1 12 92 6 85 1.46e-12 60.8
MS.gene005283.t1 AT1G73410 44.156 77 42 1 12 88 6 81 1.59e-12 61.2
MS.gene005283.t1 AT5G02320 41.772 79 45 1 10 88 65 142 1.76e-12 61.6
MS.gene005283.t1 AT5G02320 41.772 79 45 1 10 88 125 202 1.96e-12 61.6
MS.gene005283.t1 AT5G02320 41.772 79 45 1 10 88 125 202 1.96e-12 61.6
MS.gene005283.t1 AT4G32730 40.506 79 46 1 10 88 85 162 2.80e-12 61.2
MS.gene005283.t1 AT5G11510 36.709 79 49 1 10 88 79 156 2.83e-12 61.2
MS.gene005283.t1 AT5G11510 36.709 79 49 1 10 88 79 156 3.03e-12 61.2
MS.gene005283.t1 AT5G11510 36.709 79 49 1 10 88 79 156 3.03e-12 61.2
MS.gene005283.t1 AT5G11510 36.709 79 49 1 10 88 79 156 3.03e-12 61.2
MS.gene005283.t1 AT5G11510 36.709 79 49 1 10 88 79 156 3.05e-12 61.2
MS.gene005283.t1 AT3G53200 55.102 49 22 0 44 92 10 58 3.31e-12 59.7
MS.gene005283.t1 AT2G37630 42.667 75 41 1 15 87 7 81 4.30e-12 60.5
MS.gene005283.t1 AT5G59780 55.102 49 22 0 44 92 21 69 5.20e-12 59.3
MS.gene005283.t1 AT3G09370 40.506 79 46 1 10 88 141 218 5.32e-12 60.5
MS.gene005283.t1 AT3G09370 40.506 79 46 1 10 88 133 210 6.03e-12 60.5
MS.gene005283.t1 AT3G09370 40.506 79 46 1 10 88 128 205 6.21e-12 60.1
MS.gene005283.t1 AT3G46130 55.102 49 22 0 44 92 11 59 6.77e-12 59.3
MS.gene005283.t1 AT3G46130 55.102 49 22 0 44 92 21 69 6.87e-12 59.3
MS.gene005283.t1 AT4G00540 41.463 82 44 2 10 88 101 181 7.18e-12 60.1
MS.gene005283.t1 AT4G00540 41.463 82 44 2 10 88 99 179 7.64e-12 60.1
MS.gene005283.t1 AT5G14750 52.273 44 21 0 45 88 17 60 1.01e-11 57.8
MS.gene005283.t1 AT5G40350 60.000 45 18 0 44 88 6 50 1.26e-11 57.8
MS.gene005283.t1 AT3G12820 56.818 44 19 0 45 88 1 44 1.51e-11 57.8
MS.gene005283.t1 AT3G27810 60.000 45 18 0 44 88 5 49 1.79e-11 57.4
MS.gene005283.t1 AT2G25230 39.744 78 46 1 10 87 24 100 6.77e-11 56.6

Find 20 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTTCTTCTCTAGTAAT+TGG 0.206189 1.1:+61930975 None:intergenic
AAAGAATATGTGAGAAATTA+TGG 0.216509 1.1:-61931104 MS.gene005283:CDS
GAAATTATGGAGAGGGTAAT+TGG 0.224804 1.1:-61931091 MS.gene005283:CDS
TCTTGAACCATTAGACCATT+TGG 0.339713 1.1:+61930920 None:intergenic
AGACCATTTGGGTCCGATCT+TGG 0.383003 1.1:+61930932 None:intergenic
CTTGAACCATTAGACCATTT+GGG 0.397154 1.1:+61930921 None:intergenic
AAATTATGGAGAGGGTAATT+GGG 0.400713 1.1:-61931090 MS.gene005283:CDS
ATCGGACCCAAATGGTCTAA+TGG 0.439445 1.1:-61930927 MS.gene005283:CDS
CGTACGGTGCTGATACTACT+AGG 0.461056 1.1:-61931169 MS.gene005283:CDS
CCTACATCCTAATTTAGAAA+AGG 0.472729 1.1:-61931000 MS.gene005283:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.488070 1.1:-61931031 MS.gene005283:CDS
GTTGAATTGCATGCCAAGAT+CGG 0.529597 1.1:-61930945 MS.gene005283:CDS
TATGTGAGAAATTATGGAGA+GGG 0.551893 1.1:-61931098 MS.gene005283:CDS
TAGTTATTCATCATGTCGTA+CGG 0.558806 1.1:-61931185 None:intergenic
ATGCCAAGATCGGACCCAAA+TGG 0.560899 1.1:-61930935 MS.gene005283:CDS
AAATGGTCTAATGGTTCAAG+AGG 0.606213 1.1:-61930918 MS.gene005283:CDS
TGGAGAGGGTAATTGGGATG+CGG 0.617793 1.1:-61931084 MS.gene005283:CDS
AGGACCATGGTCATTACATG+AGG 0.640554 1.1:-61931138 MS.gene005283:CDS
GCATCCTCATGTAATGACCA+TGG 0.663000 1.1:+61931134 None:intergenic
ATATGTGAGAAATTATGGAG+AGG 0.669714 1.1:-61931099 MS.gene005283:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATATGTGAGAAATTA+TGG - chr1.1:61930980-61930999 MS.gene005283:CDS 20.0%
!! ATTGGAACCTTTTCTAAATT+AGG + chr1.1:61931094-61931113 None:intergenic 25.0%
AAATTATGGAGAGGGTAATT+GGG - chr1.1:61930994-61931013 MS.gene005283:CDS 30.0%
ATATGTGAGAAATTATGGAG+AGG - chr1.1:61930985-61931004 MS.gene005283:CDS 30.0%
CCTACATCCTAATTTAGAAA+AGG - chr1.1:61931084-61931103 MS.gene005283:CDS 30.0%
TATGTGAGAAATTATGGAGA+GGG - chr1.1:61930986-61931005 MS.gene005283:CDS 30.0%
TGTTCTTCTTCTCTAGTAAT+TGG + chr1.1:61931112-61931131 None:intergenic 30.0%
TTTACCACATCGAAAAAGTT+CGG + chr1.1:61931038-61931057 None:intergenic 30.0%
! CCTTTTCTAAATTAGGATGT+AGG + chr1.1:61931087-61931106 None:intergenic 30.0%
! GATACTACTAGGTTGAAAAA+AGG - chr1.1:61930926-61930945 MS.gene005283:CDS 30.0%
AAATGGTCTAATGGTTCAAG+AGG - chr1.1:61931166-61931185 MS.gene005283:CDS 35.0%
CTTGAACCATTAGACCATTT+GGG + chr1.1:61931166-61931185 None:intergenic 35.0%
GAAATTATGGAGAGGGTAAT+TGG - chr1.1:61930993-61931012 MS.gene005283:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG - chr1.1:61931053-61931072 MS.gene005283:CDS 35.0%
TCTTGAACCATTAGACCATT+TGG + chr1.1:61931167-61931186 None:intergenic 35.0%
!!! AAAACCGAACTTTTTCGATG+TGG - chr1.1:61931031-61931050 MS.gene005283:CDS 35.0%
GTTGAATTGCATGCCAAGAT+CGG - chr1.1:61931139-61931158 MS.gene005283:CDS 40.0%
! CTAGGTTGAAAAAAGGACCA+TGG - chr1.1:61930933-61930952 MS.gene005283:CDS 40.0%
AGGACCATGGTCATTACATG+AGG - chr1.1:61930946-61930965 MS.gene005283:CDS 45.0%
ATCGGACCCAAATGGTCTAA+TGG - chr1.1:61931157-61931176 MS.gene005283:CDS 45.0%
GCATCCTCATGTAATGACCA+TGG + chr1.1:61930953-61930972 None:intergenic 45.0%
AGACCATTTGGGTCCGATCT+TGG + chr1.1:61931155-61931174 None:intergenic 50.0%
ATGCCAAGATCGGACCCAAA+TGG - chr1.1:61931149-61931168 MS.gene005283:CDS 50.0%
TGGAGAGGGTAATTGGGATG+CGG - chr1.1:61931000-61931019 MS.gene005283:CDS 50.0%
!! CGTACGGTGCTGATACTACT+AGG - chr1.1:61930915-61930934 MS.gene005283:CDS 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 61930911 61931195 61930911 ID=MS.gene005283
chr1.1 mRNA 61930911 61931195 61930911 ID=MS.gene005283.t1;Parent=MS.gene005283
chr1.1 exon 61930911 61931195 61930911 ID=MS.gene005283.t1.exon1;Parent=MS.gene005283.t1
chr1.1 CDS 61930911 61931195 61930911 ID=cds.MS.gene005283.t1;Parent=MS.gene005283.t1
Gene Sequence

>MS.gene005283

ATGTCGTACGGTGCTGATACTACTAGGTTGAAAAAAGGACCATGGTCATTACATGAGGATGCAATATTAAAAGAATATGTGAGAAATTATGGAGAGGGTAATTGGGATGCGGTAAAAGAGAAAACCGAACTTTTTCGATGTGGTAAAAGTTGTCGTCTAAGATGGCTTAATCACCTACATCCTAATTTAGAAAAGGTTCCAATTACTAGAGAAGAAGAACAGAAAATCGTTGAATTGCATGCCAAGATCGGACCCAAATGGTCTAATGGTTCAAGAGGTGCGTAG
Protein sequence

>MS.gene005283.t1

MSYGADTTRLKKGPWSLHEDAILKEYVRNYGEGNWDAVKEKTELFRCGKSCRLRWLNHLHPNLEKVPITREEEQKIVELHAKIGPKWSNGSRGA