AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00530.t1 MTR_1g017490 95.245 652 17 4 1 638 1 652 0.0 1250
MS.gene00530.t1 MTR_1g017490 96.146 519 14 1 126 638 1 519 0.0 1021
MS.gene00530.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.37e-40 152
MS.gene00530.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.38e-40 152
MS.gene00530.t1 MTR_2g041430 58.407 113 47 0 130 242 7 119 1.39e-40 152
MS.gene00530.t1 MTR_4g125490 50.331 151 65 3 130 279 9 150 1.44e-39 151
MS.gene00530.t1 MTR_8g020560 55.357 112 46 1 131 242 12 119 1.47e-39 149
MS.gene00530.t1 MTR_0001s0490 50.000 142 57 3 130 271 25 152 9.68e-37 140
MS.gene00530.t1 MTR_5g027030 58.407 113 31 2 130 242 16 112 3.52e-36 139
MS.gene00530.t1 MTR_7g104050 55.556 117 44 3 128 242 76 186 1.59e-32 129
MS.gene00530.t1 MTR_7g104050 55.556 117 44 3 128 242 76 186 1.83e-32 129
MS.gene00530.t1 MTR_3g092330 54.783 115 26 3 130 242 113 203 5.63e-32 130
MS.gene00530.t1 MTR_8g035910 43.363 113 44 3 131 242 50 143 3.82e-20 94.0
MS.gene00530.t1 MTR_8g035910 35.878 131 77 4 145 271 243 370 1.82e-11 67.0
MS.gene00530.t1 MTR_8g035640 50.000 58 25 1 183 236 32 89 2.29e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00530.t1 AT2G22840 38.426 648 224 23 27 640 22 528 9.84e-92 294
MS.gene00530.t1 AT4G37740 38.315 629 211 27 32 614 28 525 9.53e-85 276
MS.gene00530.t1 AT3G13960 51.852 135 48 2 130 264 16 133 3.54e-37 143
MS.gene00530.t1 AT2G36400 57.391 115 48 1 128 242 74 187 7.59e-34 134
MS.gene00530.t1 AT2G06200 45.342 161 75 4 130 278 45 204 2.33e-32 127
MS.gene00530.t1 AT2G06200 45.342 161 75 4 130 278 6 165 2.37e-32 125
MS.gene00530.t1 AT3G52910 51.240 121 47 2 128 242 80 194 3.58e-31 125
MS.gene00530.t1 AT4G24150 48.696 115 59 0 128 242 109 223 4.77e-26 111
MS.gene00530.t1 AT4G24150 44.138 145 74 2 101 242 121 261 8.85e-26 111
MS.gene00530.t1 AT5G53660 43.939 132 53 2 124 255 53 163 8.70e-24 103
MS.gene00530.t1 AT4G24150 45.714 140 51 5 128 242 147 286 2.43e-23 104
MS.gene00530.t1 AT2G45480 49.074 108 47 3 134 239 28 129 2.53e-22 98.6
MS.gene00530.t1 AT2G45480 49.074 108 47 3 134 239 26 127 1.64e-21 98.2
MS.gene00530.t1 AT2G45480 46.479 71 36 2 198 268 304 372 5.24e-13 72.0
MS.gene00530.t1 AT2G45480 49.074 108 47 3 134 239 28 129 1.70e-21 98.2
MS.gene00530.t1 AT2G45480 46.479 71 36 2 198 268 306 374 5.33e-13 72.0
MS.gene00530.t1 AT2G06200 46.237 93 44 2 192 278 1 93 1.89e-16 78.2

Find 150 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTCTCCCAAGTTAT+TGG 0.152774 1.2:+5367838 None:intergenic
AAGAATATGAACAACCTTAT+TGG 0.157641 1.2:-5369032 MS.gene00530:CDS
CATAAGACAATGCAGCATTT+TGG 0.211480 1.2:+5371135 None:intergenic
AATAAGGTTGTTCATATTCT+TGG 0.221832 1.2:+5369034 None:intergenic
AACCATCAGTCATGAGATTT+AGG 0.225448 1.2:+5367719 None:intergenic
GTGATCATCATTTGCATTGT+AGG 0.266573 1.2:+5367771 None:intergenic
CTTGGTGGAGTGAGTTTAGA+AGG 0.269348 1.2:-5371422 MS.gene00530:CDS
TCTTCATCTATTGTTGTTCC+TGG 0.272838 1.2:-5369104 MS.gene00530:CDS
TCTGTTCTCCTACACCTTCC+TGG 0.276185 1.2:+5369344 None:intergenic
ATACTACAAAGCAAGCTAAT+TGG 0.301022 1.2:-5367864 MS.gene00530:CDS
CTCCTACACCTTCCTGGTTC+CGG 0.301178 1.2:+5369350 None:intergenic
ACAGAAAACCTCCACTTTGC+TGG 0.307229 1.2:-5368238 MS.gene00530:CDS
AAGCATTATCTTGTCCAATA+AGG 0.312606 1.2:+5369018 None:intergenic
GAGCCTGCATCTCGGTTTGT+AGG 0.333439 1.2:+5368183 None:intergenic
GTTTGAACAGGTTATAGTTC+TGG 0.342225 1.2:-5370356 MS.gene00530:intron
AGTTTGTGCAATGATCTTCT+AGG 0.349835 1.2:-5367559 MS.gene00530:CDS
TGGAGTGAGTTTAGAAGGTT+TGG 0.355173 1.2:-5371417 MS.gene00530:CDS
TCCTCGAGGAACAATGAATT+CGG 0.355251 1.2:-5368294 MS.gene00530:CDS
TCATATTCTTGGAATGTTCC+TGG 0.358480 1.2:+5369045 None:intergenic
ACACCTAACCCCATTTGAAT+AGG 0.359219 1.2:+5367931 None:intergenic
AACTCACACTTTCACCTCTT+AGG 0.372743 1.2:-5367972 MS.gene00530:CDS
ATCCATTGAGAAGGTGTAAA+TGG 0.375212 1.2:+5370317 None:intergenic
CTAATTGGATTCCAATAACT+TGG 0.378217 1.2:-5367849 MS.gene00530:CDS
TTGATTGATGCAGTGGGATG+GGG 0.381772 1.2:-5369407 MS.gene00530:intron
TTGGTGATCTGAGTGAGTTT+TGG 0.385367 1.2:+5368125 None:intergenic
CACTCTTAGCTTTGCACACC+AGG 0.388983 1.2:-5369063 MS.gene00530:CDS
GTGAAGATGAACCGAAGGTT+CGG 0.390750 1.2:+5368211 None:intergenic
TTCCACCAGTGGTGAGAGCC+TGG 0.403872 1.2:+5369210 None:intergenic
CCACAGGCTTTCTTGAACGA+TGG 0.404313 1.2:+5369246 None:intergenic
GAAATAGACCCTATTCAAAT+GGG 0.406443 1.2:-5367940 MS.gene00530:CDS
AGAAATAGACCCTATTCAAA+TGG 0.409611 1.2:-5367941 MS.gene00530:CDS
AAGCCTGTGGAAGGCCAATC+TGG 0.411103 1.2:-5369233 MS.gene00530:CDS
ACCATCAGTCATGAGATTTA+GGG 0.418748 1.2:+5367720 None:intergenic
TGGCCAGATTGGCCTTCCAC+AGG 0.420452 1.2:+5369230 None:intergenic
TCTGGCCAGGCTCTCACCAC+TGG 0.421683 1.2:-5369215 MS.gene00530:CDS
TAACTGTACATACATGCATT+TGG 0.424628 1.2:+5370161 None:intergenic
TGAAGATGAACCGAAGGTTC+GGG 0.426118 1.2:+5368212 None:intergenic
TTTGATTGATGCAGTGGGAT+GGG 0.426520 1.2:-5369408 MS.gene00530:intron
AACAACACCGATCCGGAACC+AGG 0.428029 1.2:-5369362 MS.gene00530:CDS
TTGCTGGGAACCCGAACCTT+CGG 0.432840 1.2:-5368222 MS.gene00530:CDS
AATAACTTGGGAGAGTTCAA+TGG 0.434636 1.2:-5367836 MS.gene00530:CDS
CACCTAACCCCATTTGAATA+GGG 0.440538 1.2:+5367932 None:intergenic
CCTCGAGGAACAATGAATTC+GGG 0.441663 1.2:-5368293 MS.gene00530:CDS
TGGTGAGAGCCTGGCCAGAT+TGG 0.445236 1.2:+5369219 None:intergenic
AAATCTCATGACTGATGGTT+GGG 0.448530 1.2:-5367716 MS.gene00530:CDS
ATGGATGGAGTTGGAACATC+AGG 0.449683 1.2:-5370300 MS.gene00530:CDS
TGTGGAAGGCCAATCTGGCC+AGG 0.452012 1.2:-5369228 MS.gene00530:CDS
AATGCAAATGATGATCACTA+TGG 0.452218 1.2:-5367766 MS.gene00530:CDS
TTACTTAAACAAGAGAGATC+TGG 0.453042 1.2:-5371341 MS.gene00530:CDS
TTCTGCCCTTGGACTACTAC+CGG 0.453252 1.2:+5367609 None:intergenic
AGTAGTAGTAGCTGTATTTG+TGG 0.454473 1.2:+5369187 None:intergenic
GTCCTTCAAAAGACTGCATT+CGG 0.456928 1.2:-5367652 MS.gene00530:CDS
AGAAAAGCCCTTGATTCTGC+TGG 0.462621 1.2:-5370215 MS.gene00530:CDS
CTGCTGCCAACACCATCAAC+AGG 0.462743 1.2:-5368992 MS.gene00530:intron
CAGAAAACCTCCACTTTGCT+GGG 0.465527 1.2:-5368237 MS.gene00530:CDS
GACCATTTACACCTTCTCAA+TGG 0.468591 1.2:-5370319 MS.gene00530:CDS
TTCTGACCTGTTGATGGTGT+TGG 0.470559 1.2:+5368986 None:intergenic
ATTTCTCTTGATAGCCTAAG+AGG 0.472531 1.2:+5367958 None:intergenic
CCGGTTGGCGATGATCCAAT+TGG 0.472751 1.2:+5367676 None:intergenic
TCTAGAGTGGGTGGCAGCAT+TGG 0.473483 1.2:+5368378 None:intergenic
TCTAGTTACAACAGAAATAC+AGG 0.475853 1.2:-5371092 MS.gene00530:intron
TGGTACAACAACAATGGATC+TGG 0.476248 1.2:-5371365 MS.gene00530:CDS
AGCCTGCATCTCGGTTTGTA+GGG 0.477728 1.2:+5368184 None:intergenic
GGGATGGGGAGGATTCCATC+TGG 0.478367 1.2:-5369393 MS.gene00530:CDS
CTTTGGTTTCAACTCTAGAG+TGG 0.478958 1.2:+5368365 None:intergenic
TGTTTCTAAATGGATCTTGG+TGG 0.483588 1.2:-5371437 None:intergenic
TAGATAAGCCAGCAGAATCA+AGG 0.485816 1.2:+5370207 None:intergenic
ATTCAAATGGGGTTAGGTGT+TGG 0.489350 1.2:-5367928 MS.gene00530:CDS
AGTTCAATGGGTGGTCCACT+TGG 0.489957 1.2:-5367823 MS.gene00530:CDS
AATCACAATAGTCCTCCAAT+TGG 0.497889 1.2:-5367691 MS.gene00530:CDS
CCAATTGGATCATCGCCAAC+CGG 0.498011 1.2:-5367676 MS.gene00530:CDS
AGCTCGACATGCAGTCTGAT+AGG 0.498577 1.2:-5368068 MS.gene00530:CDS
GGTGGCAGCATTGGTAGTGC+AGG 0.500285 1.2:+5368387 None:intergenic
GACCCTATTCAAATGGGGTT+AGG 0.500567 1.2:-5367934 MS.gene00530:CDS
TTCAACACCGATGACTTCCT+CGG 0.501884 1.2:-5368031 MS.gene00530:CDS
AACCCTACAAACCGAGATGC+AGG 0.503273 1.2:-5368186 MS.gene00530:CDS
TGATGAACCACTTGGAGTAA+TGG 0.508265 1.2:+5369157 None:intergenic
TTTGGTTTCAACTCTAGAGT+GGG 0.508283 1.2:+5368366 None:intergenic
TGAAGGGTTCAGAAGGGAAT+CGG 0.508397 1.2:+5368260 None:intergenic
ATTTACACCTTCTCAATGGA+TGG 0.510903 1.2:-5370315 MS.gene00530:CDS
AACAATAAAACAACTCAAGA+AGG 0.516329 1.2:-5367586 MS.gene00530:CDS
CAGGCTCTCAGCAATCCCTT+AGG 0.516400 1.2:-5368167 MS.gene00530:CDS
ATTGATGCAGTGGGATGGGG+AGG 0.517801 1.2:-5369404 MS.gene00530:intron
ATACTCGAACAACACCGATC+CGG 0.522042 1.2:-5369369 MS.gene00530:CDS
TATCCAAATCATGTTGGCAT+TGG 0.526730 1.2:+5367325 None:intergenic
AGTCGTCGATAAAATGCCTA+AGG 0.528289 1.2:+5368151 None:intergenic
ATCTGCTTTGATGAACCACT+TGG 0.531326 1.2:+5369149 None:intergenic
ATAACTTGGGAGAGTTCAAT+GGG 0.532863 1.2:-5367835 MS.gene00530:CDS
TTTCTGTTGTAACTAGACAT+AGG 0.533184 1.2:+5371098 None:intergenic
ACCTTCTCAATGGATGGAGT+TGG 0.536627 1.2:-5370309 MS.gene00530:CDS
TATAGTTCTGGAAGCATGCA+TGG 0.536987 1.2:-5370344 MS.gene00530:CDS
TAAATCTCATGACTGATGGT+TGG 0.537129 1.2:-5367717 MS.gene00530:CDS
GGAGAACAGATGGAAAGAAA+TGG 0.537455 1.2:-5369331 MS.gene00530:CDS
ACACCTTCCTGGTTCCGGAT+CGG 0.539895 1.2:+5369355 None:intergenic
TCATCTATTGTTGTTCCTGG+TGG 0.540775 1.2:-5369101 MS.gene00530:CDS
AAATCATGTTGGCATTGGTA+TGG 0.546597 1.2:+5367330 None:intergenic
AATGGGTGGTCCACTTGGAG+AGG 0.548361 1.2:-5367818 MS.gene00530:CDS
CACCAACATCATAACCGCTC+AGG 0.548639 1.2:-5368108 MS.gene00530:CDS
TGTTGTAACTAGACATAGGA+TGG 0.561408 1.2:+5371102 None:intergenic
TCAGACTGCATGTCGAGCTC+CGG 0.562970 1.2:+5368072 None:intergenic
AGATAAGCCAGCAGAATCAA+GGG 0.564902 1.2:+5370208 None:intergenic
GGAACAACAATAGATGAAGA+AGG 0.565252 1.2:+5369107 None:intergenic
GATCTTCTAGGATCAACTCT+TGG 0.567836 1.2:-5367547 MS.gene00530:intron
ATGAAGTCCGAGGAAGTCAT+CGG 0.569735 1.2:+5368024 None:intergenic
GCCCTAAATCTCATGACTGA+TGG 0.570545 1.2:-5367721 MS.gene00530:CDS
GGCCAGGCTCTCACCACTGG+TGG 0.570680 1.2:-5369212 MS.gene00530:CDS
GGTTTCAACTCTAGAGTGGG+TGG 0.570696 1.2:+5368369 None:intergenic
TGTATTTGTGGTTCCACCAG+TGG 0.570943 1.2:+5369199 None:intergenic
GGAAGGTGTAGGAGAACAGA+TGG 0.576607 1.2:-5369341 MS.gene00530:CDS
CAACACTAGTGAGAGGATGC+AGG 0.577864 1.2:-5368415 MS.gene00530:CDS
AATAAATGGTACAACAACAA+TGG 0.583357 1.2:-5371371 MS.gene00530:CDS
CGTTCAAGAAAGCCTGTGGA+AGG 0.583949 1.2:-5369242 MS.gene00530:CDS
GGATGGGGAGGATTCCATCT+GGG 0.587603 1.2:-5369392 MS.gene00530:CDS
ACTTCAACCATTACTCCAAG+TGG 0.590678 1.2:-5369164 MS.gene00530:CDS
AATGATGATCACTATGGCAG+AGG 0.596008 1.2:-5367760 MS.gene00530:CDS
TAATTGGATTCCAATAACTT+GGG 0.596671 1.2:-5367848 MS.gene00530:CDS
GTTGGCGATGATCCAATTGG+AGG 0.597813 1.2:+5367679 None:intergenic
TCGGGTTCCCAGCAAAGTGG+AGG 0.601917 1.2:+5368230 None:intergenic
ACATACATGCATTTGGTCTG+AGG 0.604587 1.2:+5370168 None:intergenic
TTGGAAACAGTGTTGCCACC+AGG 0.605229 1.2:+5369086 None:intergenic
TTGATCAAAAGTACTGCGAA+AGG 0.605510 1.2:-5369286 MS.gene00530:CDS
TAGCGCCGGTAGTAGTCCAA+GGG 0.611402 1.2:-5367614 MS.gene00530:CDS
GTAGCGCCGGTAGTAGTCCA+AGG 0.615873 1.2:-5367615 MS.gene00530:CDS
CACCTGAGCGGTTATGATGT+TGG 0.615910 1.2:+5368106 None:intergenic
ATTGCTGAGAGCCTGCATCT+CGG 0.615994 1.2:+5368175 None:intergenic
CTAACATATCCAAATCATGT+TGG 0.620967 1.2:+5367319 None:intergenic
TCCAACTCCATCCATTGAGA+AGG 0.621452 1.2:+5370308 None:intergenic
CACTCTAGAGTTGAAACCAA+AGG 0.624902 1.2:-5368364 MS.gene00530:CDS
CAACATCATAACCGCTCAGG+TGG 0.625010 1.2:-5368105 MS.gene00530:CDS
GTGTGCAAAGCTAAGAGTGT+TGG 0.626716 1.2:+5369067 None:intergenic
GTCGTCGATAAAATGCCTAA+GGG 0.628833 1.2:+5368152 None:intergenic
TCACTTTCGAATAGTAGCGC+CGG 0.636444 1.2:-5367628 MS.gene00530:CDS
CCATCGTTCAAGAAAGCCTG+TGG 0.641306 1.2:-5369246 MS.gene00530:CDS
GGTTCGGGTTCCCAGCAAAG+TGG 0.643195 1.2:+5368227 None:intergenic
TTTCTGTGAAGGGTTCAGAA+GGG 0.643231 1.2:+5368254 None:intergenic
CCCGAATTCATTGTTCCTCG+AGG 0.649213 1.2:+5368293 None:intergenic
AGATGAAGAACCTCTCCAAG+TGG 0.649574 1.2:+5367808 None:intergenic
ATCCGGAACCAGGAAGGTGT+AGG 0.650872 1.2:-5369352 MS.gene00530:CDS
ATAGGTAAAAGCAAATGATG+AGG 0.652672 1.2:+5370239 None:intergenic
AGAATAACAACACTAGTGAG+AGG 0.653602 1.2:-5368422 MS.gene00530:CDS
ACACCGATCCGGAACCAGGA+AGG 0.656785 1.2:-5369358 MS.gene00530:CDS
TGTTGTTCGAGTATCCCAGA+TGG 0.657354 1.2:+5369378 None:intergenic
ATCAGTCATGAGATTTAGGG+CGG 0.658516 1.2:+5367723 None:intergenic
ACTAGTGAGAGGATGCAGGA+TGG 0.682389 1.2:-5368411 MS.gene00530:CDS
AAATAGACCCTATTCAAATG+GGG 0.682714 1.2:-5367939 MS.gene00530:CDS
CGTGAACGACATGAAGTCCG+AGG 0.693679 1.2:+5368014 None:intergenic
ACTTGGGAGAGTTCAATGGG+TGG 0.696784 1.2:-5367832 MS.gene00530:CDS
TGCGAAAGGCATATGAACAG+AGG 0.714010 1.2:-5369272 MS.gene00530:CDS
TTTCATATGATGAGTCCTCG+AGG 0.724605 1.2:-5368308 MS.gene00530:CDS
AGTTCTGGAAGCATGCATGG+AGG 0.751541 1.2:-5370341 MS.gene00530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTATTTTTAACAAAATTA+AGG + chr1.2:5369837-5369856 None:intergenic 10.0%
!!! TTTTTATTTATTTTCATGTA+AGG + chr1.2:5368176-5368195 None:intergenic 10.0%
!! ATGATATTACATTACATATA+TGG - chr1.2:5371360-5371379 MS.gene00530:CDS 15.0%
!! TATCTTTGTTAGTATTAATT+AGG + chr1.2:5368642-5368661 None:intergenic 15.0%
!! TATGTATTTATGAATCTATA+TGG - chr1.2:5367779-5367798 MS.gene00530:CDS 15.0%
!! TTGCATTATATTAGAAAATA+AGG - chr1.2:5369012-5369031 MS.gene00530:CDS 15.0%
!!! AAATTTATACATTTTGGATT+TGG - chr1.2:5367747-5367766 MS.gene00530:CDS 15.0%
!!! ATTTTCTAATATAATGCAAA+GGG + chr1.2:5369011-5369030 None:intergenic 15.0%
!!! TATTTTCTAATATAATGCAA+AGG + chr1.2:5369012-5369031 None:intergenic 15.0%
!!! TATTTTTTTTCCAATCATTT+TGG - chr1.2:5368753-5368772 MS.gene00530:intron 15.0%
!!! TTGTAATTTTGGTTAATTTA+AGG - chr1.2:5368945-5368964 MS.gene00530:intron 15.0%
!! AAATCAAATTTGTGTTTGAA+GGG - chr1.2:5369037-5369056 MS.gene00530:CDS 20.0%
!! ATAAGGTTGTTATAGTTATA+AGG - chr1.2:5367828-5367847 MS.gene00530:CDS 20.0%
!! ATTTATGAGCTATAATATGT+AGG - chr1.2:5368068-5368087 MS.gene00530:CDS 20.0%
!! CTAACAAAGATAAACATTAT+TGG - chr1.2:5368650-5368669 MS.gene00530:intron 20.0%
!! TATAGTACTAATCAATATGT+AGG - chr1.2:5369878-5369897 MS.gene00530:intron 20.0%
!! TATATTCCGTTATTCATTTA+GGG - chr1.2:5370113-5370132 MS.gene00530:intron 20.0%
!! TTATATTCCGTTATTCATTT+AGG - chr1.2:5370112-5370131 MS.gene00530:intron 20.0%
!!! AAAAGCTACAAAATTTTGAT+TGG - chr1.2:5368095-5368114 MS.gene00530:CDS 20.0%
!!! AAGGATGTTTTTTGTAATTT+TGG - chr1.2:5368934-5368953 MS.gene00530:intron 20.0%
!!! AATCAACTTTTTTTGTGTTT+TGG - chr1.2:5368320-5368339 MS.gene00530:CDS 20.0%
!!! AGGTACAACATTTTTTTTTT+AGG - chr1.2:5367689-5367708 MS.gene00530:CDS 20.0%
!!! ATGGAAATATATTTTTTGAG+TGG - chr1.2:5367884-5367903 MS.gene00530:CDS 20.0%
!!! TACATATTGATTAGTACTAT+AGG + chr1.2:5369879-5369898 None:intergenic 20.0%
!!! TTATTTATTTTCATGTAAGG+AGG + chr1.2:5368173-5368192 None:intergenic 20.0%
!!! TTTGTTACTTTTGTGTATAA+GGG - chr1.2:5370232-5370251 MS.gene00530:CDS 20.0%
!!! TTTTGTTACTTTTGTGTATA+AGG - chr1.2:5370231-5370250 MS.gene00530:CDS 20.0%
! AACAATAAAACAACTCAAGA+AGG - chr1.2:5371175-5371194 MS.gene00530:CDS 25.0%
! AAGAATATGAACAACCTTAT+TGG - chr1.2:5369729-5369748 MS.gene00530:intron 25.0%
! AATAAATGGTACAACAACAA+TGG - chr1.2:5367390-5367409 MS.gene00530:intron 25.0%
! AATAAGGTTGTTCATATTCT+TGG + chr1.2:5369730-5369749 None:intergenic 25.0%
! AATCTATATGGTATCCATTT+GGG - chr1.2:5367791-5367810 MS.gene00530:CDS 25.0%
! AATCTCACACATTCAATTTA+AGG + chr1.2:5368780-5368799 None:intergenic 25.0%
! AATGTACCAAAATTGCAAAA+AGG - chr1.2:5368818-5368837 MS.gene00530:intron 25.0%
! AATTTAAGGACCAAAATGAT+TGG + chr1.2:5368766-5368785 None:intergenic 25.0%
! ATCCTGAGTCAAAAAATAAA+TGG - chr1.2:5367376-5367395 MS.gene00530:intron 25.0%
! ATGTACCAAAATTGCAAAAA+GGG - chr1.2:5368819-5368838 MS.gene00530:intron 25.0%
! ATTAATTAGGCAAGGAAAAA+GGG + chr1.2:5368629-5368648 None:intergenic 25.0%
! CAAATCAAATTTGTGTTTGA+AGG - chr1.2:5369036-5369055 MS.gene00530:CDS 25.0%
! CTTCAAACACAAATTTGATT+TGG + chr1.2:5369038-5369057 None:intergenic 25.0%
! TAATTGGATTCCAATAACTT+GGG - chr1.2:5370913-5370932 MS.gene00530:intron 25.0%
! TAGAGAATCACAATCAATTA+CGG + chr1.2:5370058-5370077 None:intergenic 25.0%
! TATTAATTAGGCAAGGAAAA+AGG + chr1.2:5368630-5368649 None:intergenic 25.0%
! TGAAAAAACAAATTGATCGT+TGG - chr1.2:5369142-5369161 MS.gene00530:CDS 25.0%
! TTGTTAGTATTAATTAGGCA+AGG + chr1.2:5368637-5368656 None:intergenic 25.0%
!!! AAAGATTCAGATTTTGAAGT+AGG + chr1.2:5367588-5367607 None:intergenic 25.0%
!!! ACAGATTTTTTAGAGAAAGA+TGG + chr1.2:5368133-5368152 None:intergenic 25.0%
!!! ATGAAAGATTGATTTTCCTT+TGG + chr1.2:5370416-5370435 None:intergenic 25.0%
!!! TACCATTTATTTTTTGACTC+AGG + chr1.2:5367381-5367400 None:intergenic 25.0%
!!! TAGTTGATAACTAACAATCA+AGG + chr1.2:5369259-5369278 None:intergenic 25.0%
!!! TTGCAATTTTGGTACATTTA+GGG + chr1.2:5368816-5368835 None:intergenic 25.0%
!!! TTTGCAATTTTGGTACATTT+AGG + chr1.2:5368817-5368836 None:intergenic 25.0%
!!! TTTTTTTGTTTCTTGTTTGC+AGG - chr1.2:5370297-5370316 MS.gene00530:CDS 25.0%
AAATAGACCCTATTCAAATG+GGG - chr1.2:5370822-5370841 MS.gene00530:intron 30.0%
AACATTAAACATGTCATGTG+AGG - chr1.2:5369309-5369328 MS.gene00530:CDS 30.0%
AAGCATTATCTTGTCCAATA+AGG + chr1.2:5369746-5369765 None:intergenic 30.0%
AATGCAAATGATGATCACTA+TGG - chr1.2:5370995-5371014 MS.gene00530:intron 30.0%
ACAGTATTCAACAAACATCA+AGG + chr1.2:5368387-5368406 None:intergenic 30.0%
ACATAAAATACATGATGCCA+CGG + chr1.2:5370006-5370025 None:intergenic 30.0%
AGAAATAGACCCTATTCAAA+TGG - chr1.2:5370820-5370839 MS.gene00530:intron 30.0%
AGAGCACACAACAAAAAAAA+AGG + chr1.2:5368283-5368302 None:intergenic 30.0%
ATACTACAAAGCAAGCTAAT+TGG - chr1.2:5370897-5370916 MS.gene00530:intron 30.0%
ATAGGTAAAAGCAAATGATG+AGG + chr1.2:5368525-5368544 None:intergenic 30.0%
ATCTATATGGTATCCATTTG+GGG - chr1.2:5367792-5367811 MS.gene00530:CDS 30.0%
CATCAAGGTAAAGTCAAAAA+AGG + chr1.2:5368372-5368391 None:intergenic 30.0%
CTAATCTAATCACATTCCAT+TGG + chr1.2:5370176-5370195 None:intergenic 30.0%
CTAATTGGATTCCAATAACT+TGG - chr1.2:5370912-5370931 MS.gene00530:intron 30.0%
GAAATAGACCCTATTCAAAT+GGG - chr1.2:5370821-5370840 MS.gene00530:intron 30.0%
GAATCATTCAAAAGTCAATG+TGG - chr1.2:5369092-5369111 MS.gene00530:CDS 30.0%
GAATCTATATGGTATCCATT+TGG - chr1.2:5367790-5367809 MS.gene00530:CDS 30.0%
GGGGAGCTAAAAAATTTATA+AGG - chr1.2:5367811-5367830 MS.gene00530:CDS 30.0%
GTTGTAAATCAGTTTAGTCT+TGG + chr1.2:5368896-5368915 None:intergenic 30.0%
TAACTGTACATACATGCATT+TGG + chr1.2:5368603-5368622 None:intergenic 30.0%
TATTGCAAGAAATGTACCAA+TGG - chr1.2:5370157-5370176 MS.gene00530:intron 30.0%
TCTAGTTACAACAGAAATAC+AGG - chr1.2:5367669-5367688 MS.gene00530:CDS 30.0%
TGTACCAAAATTGCAAAAAG+GGG - chr1.2:5368820-5368839 MS.gene00530:intron 30.0%
TGTAGTCCCTAAATGAATAA+CGG + chr1.2:5370122-5370141 None:intergenic 30.0%
TGTGTATAAGGGATAAATTC+AGG - chr1.2:5370243-5370262 MS.gene00530:CDS 30.0%
TGTTTCTTATAGTTTAGTGC+AGG + chr1.2:5368869-5368888 None:intergenic 30.0%
TTAAGTCATGTCAAGAGATA+AGG - chr1.2:5367916-5367935 MS.gene00530:CDS 30.0%
TTACTTAAACAAGAGAGATC+TGG - chr1.2:5367420-5367439 MS.gene00530:intron 30.0%
TTGTTGAATACTGTTTGAAC+AGG - chr1.2:5368393-5368412 MS.gene00530:CDS 30.0%
TTTCTGTTGTAACTAGACAT+AGG + chr1.2:5367666-5367685 None:intergenic 30.0%
! ATAAGACAATGCAGCATTTT+GGG + chr1.2:5367628-5367647 None:intergenic 30.0%
! ATTTTTGCACAGTATACTAG+AGG - chr1.2:5368029-5368048 MS.gene00530:CDS 30.0%
! CTTATCTTCTTCCTGTTTTA+GGG - chr1.2:5367990-5368009 MS.gene00530:CDS 30.0%
! TCTTATCTTCTTCCTGTTTT+AGG - chr1.2:5367989-5368008 MS.gene00530:CDS 30.0%
! TTTTTGCACAGTATACTAGA+GGG - chr1.2:5368030-5368049 MS.gene00530:CDS 30.0%
!! ATGTTTTTGATTGATGCAGT+GGG - chr1.2:5369348-5369367 MS.gene00530:CDS 30.0%
!! TATGTTTTTGATTGATGCAG+TGG - chr1.2:5369347-5369366 MS.gene00530:CDS 30.0%
!! TGAAAGTGTGAGTTTTTCAT+TGG + chr1.2:5370783-5370802 None:intergenic 30.0%
!!! AAATTTTTTAGCTCCCCAAA+TGG + chr1.2:5367808-5367827 None:intergenic 30.0%
!!! ACTACACTTTTTTCTTCTGA+TGG - chr1.2:5367534-5367553 MS.gene00530:intron 30.0%
AAATCTCATGACTGATGGTT+GGG - chr1.2:5371045-5371064 MS.gene00530:intron 35.0%
AAATTGCAAAAAGGGGCTAA+TGG - chr1.2:5368827-5368846 MS.gene00530:intron 35.0%
AACCATCAGTCATGAGATTT+AGG + chr1.2:5371045-5371064 None:intergenic 35.0%
AATAACTTGGGAGAGTTCAA+TGG - chr1.2:5370925-5370944 MS.gene00530:intron 35.0%
AATCACAATAGTCCTCCAAT+TGG - chr1.2:5371070-5371089 MS.gene00530:intron 35.0%
ACCATCAGTCATGAGATTTA+GGG + chr1.2:5371044-5371063 None:intergenic 35.0%
AGAATAACAACACTAGTGAG+AGG - chr1.2:5370339-5370358 MS.gene00530:CDS 35.0%
AGTAGTAGTAGCTGTATTTG+TGG + chr1.2:5369577-5369596 None:intergenic 35.0%
AGTTTGTGCAATGATCTTCT+AGG - chr1.2:5371202-5371221 MS.gene00530:CDS 35.0%
ATAACTTGGGAGAGTTCAAT+GGG - chr1.2:5370926-5370945 MS.gene00530:intron 35.0%
ATACTTCCTTTACTCCTTAG+AGG - chr1.2:5371242-5371261 MS.gene00530:CDS 35.0%
ATATGTGAATTGTTACGCTG+TGG + chr1.2:5369072-5369091 None:intergenic 35.0%
ATGTAAGGAGGATGTAGAAA+AGG + chr1.2:5368161-5368180 None:intergenic 35.0%
ATTAAACATGTCATGTGAGG+TGG - chr1.2:5369312-5369331 MS.gene00530:CDS 35.0%
ATTGAACTCTCCCAAGTTAT+TGG + chr1.2:5370926-5370945 None:intergenic 35.0%
ATTTACACCTTCTCAATGGA+TGG - chr1.2:5368446-5368465 MS.gene00530:intron 35.0%
CTTGACAAGAGATACATTCA+AGG - chr1.2:5368915-5368934 MS.gene00530:intron 35.0%
GGAACAACAATAGATGAAGA+AGG + chr1.2:5369657-5369676 None:intergenic 35.0%
GTATGATTCTACAGTACTGT+TGG - chr1.2:5367850-5367869 MS.gene00530:CDS 35.0%
GTGATCATCATTTGCATTGT+AGG + chr1.2:5370993-5371012 None:intergenic 35.0%
GTTTGAACAGGTTATAGTTC+TGG - chr1.2:5368405-5368424 MS.gene00530:CDS 35.0%
TAAATCTCATGACTGATGGT+TGG - chr1.2:5371044-5371063 MS.gene00530:intron 35.0%
TCATATTCTTGGAATGTTCC+TGG + chr1.2:5369719-5369738 None:intergenic 35.0%
TGATGTCATCAACTCATCAT+TGG - chr1.2:5369281-5369300 MS.gene00530:CDS 35.0%
TGTCAAGAGATAAGGAACAT+AGG - chr1.2:5367924-5367943 MS.gene00530:CDS 35.0%
TGTTGTAACTAGACATAGGA+TGG + chr1.2:5367662-5367681 None:intergenic 35.0%
TTCTTCATCTTGTTCCTCTA+AGG + chr1.2:5371259-5371278 None:intergenic 35.0%
! AAACAAATTAGAGTGTCACG+AGG - chr1.2:5369950-5369969 MS.gene00530:intron 35.0%
! AACAAATTAGAGTGTCACGA+GGG - chr1.2:5369951-5369970 MS.gene00530:intron 35.0%
! ATCCATTGAGAAGGTGTAAA+TGG + chr1.2:5368447-5368466 None:intergenic 35.0%
! ATTTCTCTTGATAGCCTAAG+AGG + chr1.2:5370806-5370825 None:intergenic 35.0%
! CATAAGACAATGCAGCATTT+TGG + chr1.2:5367629-5367648 None:intergenic 35.0%
! GCAGTACTTTTGATCAACAA+CGG + chr1.2:5369472-5369491 None:intergenic 35.0%
! TCTTCATCTATTGTTGTTCC+TGG - chr1.2:5369657-5369676 MS.gene00530:intron 35.0%
! TTAGCCCCTTTTTGCAATTT+TGG + chr1.2:5368827-5368846 None:intergenic 35.0%
!! GTTTTATTGTTTTCTGCCCT+TGG + chr1.2:5371166-5371185 None:intergenic 35.0%
!! TGTGAGTTTTTCATTGGTTG+CGG + chr1.2:5370777-5370796 None:intergenic 35.0%
!! TTGATCAAAAGTACTGCGAA+AGG - chr1.2:5369475-5369494 MS.gene00530:intron 35.0%
!! TTTGGTTTCAACTCTAGAGT+GGG + chr1.2:5370398-5370417 None:intergenic 35.0%
AAAACCCATCTCCCTAAAAC+AGG + chr1.2:5368004-5368023 None:intergenic 40.0%
AACTCACACTTTCACCTCTT+AGG - chr1.2:5370789-5370808 MS.gene00530:intron 40.0%
AATGATGATCACTATGGCAG+AGG - chr1.2:5371001-5371020 MS.gene00530:intron 40.0%
ACACCTAACCCCATTTGAAT+AGG + chr1.2:5370833-5370852 None:intergenic 40.0%
ACATACATGCATTTGGTCTG+AGG + chr1.2:5368596-5368615 None:intergenic 40.0%
ACTTCAACCATTACTCCAAG+TGG - chr1.2:5369597-5369616 MS.gene00530:intron 40.0%
AGATAAGCCAGCAGAATCAA+GGG + chr1.2:5368556-5368575 None:intergenic 40.0%
AGTCGTCGATAAAATGCCTA+AGG + chr1.2:5370613-5370632 None:intergenic 40.0%
ATCAGTCATGAGATTTAGGG+CGG + chr1.2:5371041-5371060 None:intergenic 40.0%
ATCTGCTTTGATGAACCACT+TGG + chr1.2:5369615-5369634 None:intergenic 40.0%
ATTCAAATGGGGTTAGGTGT+TGG - chr1.2:5370833-5370852 MS.gene00530:intron 40.0%
CACCTAACCCCATTTGAATA+GGG + chr1.2:5370832-5370851 None:intergenic 40.0%
GACCATTTACACCTTCTCAA+TGG - chr1.2:5368442-5368461 MS.gene00530:CDS 40.0%
GATTCTACAGTACTGTTGGA+GGG - chr1.2:5367854-5367873 MS.gene00530:CDS 40.0%
GGAGAACAGATGGAAAGAAA+TGG - chr1.2:5369430-5369449 MS.gene00530:intron 40.0%
GGTTGAAAACATGTCATGTG+AGG - chr1.2:5369163-5369182 MS.gene00530:CDS 40.0%
GTCCTTCAAAAGACTGCATT+CGG - chr1.2:5371109-5371128 MS.gene00530:CDS 40.0%
GTCGTCGATAAAATGCCTAA+GGG + chr1.2:5370612-5370631 None:intergenic 40.0%
TAGATAAGCCAGCAGAATCA+AGG + chr1.2:5368557-5368576 None:intergenic 40.0%
TCCTCGAGGAACAATGAATT+CGG - chr1.2:5370467-5370486 MS.gene00530:intron 40.0%
TGAAAACATGTCATGTGAGG+TGG - chr1.2:5369166-5369185 MS.gene00530:CDS 40.0%
TGATGAACCACTTGGAGTAA+TGG + chr1.2:5369607-5369626 None:intergenic 40.0%
TGATTCTACAGTACTGTTGG+AGG - chr1.2:5367853-5367872 MS.gene00530:CDS 40.0%
TGGAGTGAGTTTAGAAGGTT+TGG - chr1.2:5367344-5367363 MS.gene00530:CDS 40.0%
TGGTACAACAACAATGGATC+TGG - chr1.2:5367396-5367415 MS.gene00530:intron 40.0%
TGTGAGGTGGAGTAGTAATA+TGG - chr1.2:5369179-5369198 MS.gene00530:CDS 40.0%
TTTCATATGATGAGTCCTCG+AGG - chr1.2:5370453-5370472 MS.gene00530:intron 40.0%
TTTCTGTGAAGGGTTCAGAA+GGG + chr1.2:5370510-5370529 None:intergenic 40.0%
TTTGATTGATGCAGTGGGAT+GGG - chr1.2:5369353-5369372 MS.gene00530:CDS 40.0%
! AAAGTGGAGGTTTTCTGTGA+AGG + chr1.2:5370521-5370540 None:intergenic 40.0%
! AAGTGGAGGTTTTCTGTGAA+GGG + chr1.2:5370520-5370539 None:intergenic 40.0%
! ATCCGAATGCAGTCTTTTGA+AGG + chr1.2:5371114-5371133 None:intergenic 40.0%
! CTTGTTCCTCTAAGGAGTAA+AGG + chr1.2:5371251-5371270 None:intergenic 40.0%
! CTTTGGTTTCAACTCTAGAG+TGG + chr1.2:5370399-5370418 None:intergenic 40.0%
! GAATCAAGGGCTTTTCTGAT+AGG + chr1.2:5368543-5368562 None:intergenic 40.0%
! GTTTTGTGAAGATGAACCGA+AGG + chr1.2:5370558-5370577 None:intergenic 40.0%
! TCATCTATTGTTGTTCCTGG+TGG - chr1.2:5369660-5369679 MS.gene00530:intron 40.0%
! TGGTGATCTGAGTGAGTTTT+GGG + chr1.2:5370638-5370657 None:intergenic 40.0%
! TTTTCTGTGAAGGGTTCAGA+AGG + chr1.2:5370511-5370530 None:intergenic 40.0%
!! CACTCTAGAGTTGAAACCAA+AGG - chr1.2:5370397-5370416 MS.gene00530:intron 40.0%
!! CTAGTTTTCTGACCTGTTGA+TGG + chr1.2:5369784-5369803 None:intergenic 40.0%
!! GATCTTCTAGGATCAACTCT+TGG - chr1.2:5371214-5371233 MS.gene00530:CDS 40.0%
!! TATAGTTCTGGAAGCATGCA+TGG - chr1.2:5368417-5368436 MS.gene00530:CDS 40.0%
!! TTGGTGATCTGAGTGAGTTT+TGG + chr1.2:5370639-5370658 None:intergenic 40.0%
!! TTTTGATTGATGCAGTGGGA+TGG - chr1.2:5369352-5369371 MS.gene00530:CDS 40.0%
!!! TCTTCCTGTTTTAGGGAGAT+GGG - chr1.2:5367997-5368016 MS.gene00530:CDS 40.0%
!!! TTCTTCCTGTTTTAGGGAGA+TGG - chr1.2:5367996-5368015 MS.gene00530:CDS 40.0%
AAACATGTCATGTGAGGTGG+TGG - chr1.2:5369169-5369188 MS.gene00530:CDS 45.0%
ACAGAAAACCTCCACTTTGC+TGG - chr1.2:5370523-5370542 MS.gene00530:intron 45.0%
ACCTTCTCAATGGATGGAGT+TGG - chr1.2:5368452-5368471 MS.gene00530:intron 45.0%
AGAAAAGCCCTTGATTCTGC+TGG - chr1.2:5368546-5368565 MS.gene00530:intron 45.0%
AGATGAAGAACCTCTCCAAG+TGG + chr1.2:5370956-5370975 None:intergenic 45.0%
ATACTCGAACAACACCGATC+CGG - chr1.2:5369392-5369411 MS.gene00530:CDS 45.0%
ATGAAGTCCGAGGAAGTCAT+CGG + chr1.2:5370740-5370759 None:intergenic 45.0%
ATGGATGGAGTTGGAACATC+AGG - chr1.2:5368461-5368480 MS.gene00530:intron 45.0%
CAGAAAACCTCCACTTTGCT+GGG - chr1.2:5370524-5370543 MS.gene00530:intron 45.0%
CCTCGAGGAACAATGAATTC+GGG - chr1.2:5370468-5370487 MS.gene00530:intron 45.0%
CTTGGTGGAGTGAGTTTAGA+AGG - chr1.2:5367339-5367358 MS.gene00530:CDS 45.0%
GACCCTATTCAAATGGGGTT+AGG - chr1.2:5370827-5370846 MS.gene00530:intron 45.0%
GCCCTAAATCTCATGACTGA+TGG - chr1.2:5371040-5371059 MS.gene00530:intron 45.0%
GTGAAGATGAACCGAAGGTT+CGG + chr1.2:5370553-5370572 None:intergenic 45.0%
TCACTTTCGAATAGTAGCGC+CGG - chr1.2:5371133-5371152 MS.gene00530:CDS 45.0%
TCCAACTCCATCCATTGAGA+AGG + chr1.2:5368456-5368475 None:intergenic 45.0%
TGAAGATGAACCGAAGGTTC+GGG + chr1.2:5370552-5370571 None:intergenic 45.0%
TGAAGGGTTCAGAAGGGAAT+CGG + chr1.2:5370504-5370523 None:intergenic 45.0%
TGTATTTGTGGTTCCACCAG+TGG + chr1.2:5369565-5369584 None:intergenic 45.0%
TGTCTCTATGACTGCTGTTG+AGG - chr1.2:5370023-5370042 MS.gene00530:intron 45.0%
TGTTGTTCGAGTATCCCAGA+TGG + chr1.2:5369386-5369405 None:intergenic 45.0%
TTCAACACCGATGACTTCCT+CGG - chr1.2:5370730-5370749 MS.gene00530:intron 45.0%
TTGATTGATGCAGTGGGATG+GGG - chr1.2:5369354-5369373 MS.gene00530:CDS 45.0%
TTGCAAAAAGGGGCTAATGG+AGG - chr1.2:5368830-5368849 MS.gene00530:intron 45.0%
! ACTGTTGGAGGGTCTTTTCA+TGG - chr1.2:5367865-5367884 MS.gene00530:CDS 45.0%
! GTGTGCAAAGCTAAGAGTGT+TGG + chr1.2:5369697-5369716 None:intergenic 45.0%
! TGCGAAAGGCATATGAACAG+AGG - chr1.2:5369489-5369508 MS.gene00530:intron 45.0%
!! GAGTTTTTCATTGGTTGCGG+AGG + chr1.2:5370774-5370793 None:intergenic 45.0%
!! TGCAGTCTTTTGAAGGACTC+CGG + chr1.2:5371107-5371126 None:intergenic 45.0%
!! TTCTGACCTGTTGATGGTGT+TGG + chr1.2:5369778-5369797 None:intergenic 45.0%
!!! ATTAAAAAATTTATACATTT+TGG - chr1.2:5367741-5367760 MS.gene00530:CDS 5.0%
AACCCTACAAACCGAGATGC+AGG - chr1.2:5370575-5370594 MS.gene00530:intron 50.0%
ACTAGTGAGAGGATGCAGGA+TGG - chr1.2:5370350-5370369 MS.gene00530:intron 50.0%
ACTTGGGAGAGTTCAATGGG+TGG - chr1.2:5370929-5370948 MS.gene00530:intron 50.0%
AGCTCGACATGCAGTCTGAT+AGG - chr1.2:5370693-5370712 MS.gene00530:intron 50.0%
AGTTCAATGGGTGGTCCACT+TGG - chr1.2:5370938-5370957 MS.gene00530:intron 50.0%
ATTGCTGAGAGCCTGCATCT+CGG + chr1.2:5370589-5370608 None:intergenic 50.0%
CAACACTAGTGAGAGGATGC+AGG - chr1.2:5370346-5370365 MS.gene00530:CDS 50.0%
CAACATCATAACCGCTCAGG+TGG - chr1.2:5370656-5370675 MS.gene00530:intron 50.0%
CACCAACATCATAACCGCTC+AGG - chr1.2:5370653-5370672 MS.gene00530:intron 50.0%
CACCTGAGCGGTTATGATGT+TGG + chr1.2:5370658-5370677 None:intergenic 50.0%
CCAATTGGATCATCGCCAAC+CGG - chr1.2:5371085-5371104 MS.gene00530:intron 50.0%
CCACAGGCTTTCTTGAACGA+TGG + chr1.2:5369518-5369537 None:intergenic 50.0%
CCATCGTTCAAGAAAGCCTG+TGG - chr1.2:5369515-5369534 MS.gene00530:intron 50.0%
CCCGAATTCATTGTTCCTCG+AGG + chr1.2:5370471-5370490 None:intergenic 50.0%
CGTTCAAGAAAGCCTGTGGA+AGG - chr1.2:5369519-5369538 MS.gene00530:intron 50.0%
GATAGCGTGTCACACGTTCA+AGG - chr1.2:5368976-5368995 MS.gene00530:intron 50.0%
GCCAAGAAAAACCACCTGAG+CGG + chr1.2:5370670-5370689 None:intergenic 50.0%
GTTGGCGATGATCCAATTGG+AGG + chr1.2:5371085-5371104 None:intergenic 50.0%
TCTGTTCTCCTACACCTTCC+TGG + chr1.2:5369420-5369439 None:intergenic 50.0%
TTCTGCCCTTGGACTACTAC+CGG + chr1.2:5371155-5371174 None:intergenic 50.0%
TTGGAAACAGTGTTGCCACC+AGG + chr1.2:5369678-5369697 None:intergenic 50.0%
! ACCGCTCAGGTGGTTTTTCT+TGG - chr1.2:5370666-5370685 MS.gene00530:intron 50.0%
! AGCCTGCATCTCGGTTTGTA+GGG + chr1.2:5370580-5370599 None:intergenic 50.0%
! CTCAGGTGGTTTTTCTTGGC+CGG - chr1.2:5370670-5370689 MS.gene00530:intron 50.0%
! GGAAGGTGTAGGAGAACAGA+TGG - chr1.2:5369420-5369439 MS.gene00530:intron 50.0%
!! AGTTCTGGAAGCATGCATGG+AGG - chr1.2:5368420-5368439 MS.gene00530:CDS 50.0%
!! CACTCTTAGCTTTGCACACC+AGG - chr1.2:5369698-5369717 MS.gene00530:intron 50.0%
!! GGTTTCAACTCTAGAGTGGG+TGG + chr1.2:5370395-5370414 None:intergenic 50.0%
!! GTCTTTTGAAGGACTCCGGT+TGG + chr1.2:5371103-5371122 None:intergenic 50.0%
AACAACACCGATCCGGAACC+AGG - chr1.2:5369399-5369418 MS.gene00530:intron 55.0%
AAGCCTGTGGAAGGCCAATC+TGG - chr1.2:5369528-5369547 MS.gene00530:intron 55.0%
AATGGGTGGTCCACTTGGAG+AGG - chr1.2:5370943-5370962 MS.gene00530:intron 55.0%
ACACCTTCCTGGTTCCGGAT+CGG + chr1.2:5369409-5369428 None:intergenic 55.0%
ACGGCTCAGATCATAGTCGC+AGG + chr1.2:5369987-5370006 None:intergenic 55.0%
ATTGATGCAGTGGGATGGGG+AGG - chr1.2:5369357-5369376 MS.gene00530:CDS 55.0%
CAGGCTCTCAGCAATCCCTT+AGG - chr1.2:5370594-5370613 MS.gene00530:intron 55.0%
CCGGTTGGCGATGATCCAAT+TGG + chr1.2:5371088-5371107 None:intergenic 55.0%
CGTGAACGACATGAAGTCCG+AGG + chr1.2:5370750-5370769 None:intergenic 55.0%
CTCCTACACCTTCCTGGTTC+CGG + chr1.2:5369414-5369433 None:intergenic 55.0%
CTGCTGCCAACACCATCAAC+AGG - chr1.2:5369769-5369788 MS.gene00530:intron 55.0%
GGATGGGGAGGATTCCATCT+GGG - chr1.2:5369369-5369388 MS.gene00530:CDS 55.0%
TCAGACTGCATGTCGAGCTC+CGG + chr1.2:5370692-5370711 None:intergenic 55.0%
TGCGACTATGATCTGAGCCG+TGG - chr1.2:5369986-5370005 MS.gene00530:intron 55.0%
TTGCTGGGAACCCGAACCTT+CGG - chr1.2:5370539-5370558 MS.gene00530:intron 55.0%
! ATCCGGAACCAGGAAGGTGT+AGG - chr1.2:5369409-5369428 MS.gene00530:intron 55.0%
! GAGCCTGCATCTCGGTTTGT+AGG + chr1.2:5370581-5370600 None:intergenic 55.0%
! TCTAGAGTGGGTGGCAGCAT+TGG + chr1.2:5370386-5370405 None:intergenic 55.0%
!! TAGCGCCGGTAGTAGTCCAA+GGG - chr1.2:5371147-5371166 MS.gene00530:CDS 55.0%
ACACCGATCCGGAACCAGGA+AGG - chr1.2:5369403-5369422 MS.gene00530:intron 60.0%
GGGATGGGGAGGATTCCATC+TGG - chr1.2:5369368-5369387 MS.gene00530:CDS 60.0%
TCGGGTTCCCAGCAAAGTGG+AGG + chr1.2:5370534-5370553 None:intergenic 60.0%
TGGTGAGAGCCTGGCCAGAT+TGG + chr1.2:5369545-5369564 None:intergenic 60.0%
TGTGGAAGGCCAATCTGGCC+AGG - chr1.2:5369533-5369552 MS.gene00530:intron 60.0%
TTCCACCAGTGGTGAGAGCC+TGG + chr1.2:5369554-5369573 None:intergenic 60.0%
! GGTTCGGGTTCCCAGCAAAG+TGG + chr1.2:5370537-5370556 None:intergenic 60.0%
!! GGTGGCAGCATTGGTAGTGC+AGG + chr1.2:5370377-5370396 None:intergenic 60.0%
!! GTAGCGCCGGTAGTAGTCCA+AGG - chr1.2:5371146-5371165 MS.gene00530:CDS 60.0%
!! TGGCCAGATTGGCCTTCCAC+AGG + chr1.2:5369534-5369553 None:intergenic 60.0%
TCTGGCCAGGCTCTCACCAC+TGG - chr1.2:5369546-5369565 MS.gene00530:intron 65.0%
GGCCAGGCTCTCACCACTGG+TGG - chr1.2:5369549-5369568 MS.gene00530:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 5367333 5371450 5367333 ID=MS.gene00530
chr1.2 mRNA 5367333 5371450 5367333 ID=MS.gene00530.t1;Parent=MS.gene00530
chr1.2 exon 5371093 5371450 5371093 ID=MS.gene00530.t1.exon1;Parent=MS.gene00530.t1
chr1.2 CDS 5371093 5371450 5371093 ID=cds.MS.gene00530.t1;Parent=MS.gene00530.t1
chr1.2 exon 5370174 5370368 5370174 ID=MS.gene00530.t1.exon2;Parent=MS.gene00530.t1
chr1.2 CDS 5370174 5370368 5370174 ID=cds.MS.gene00530.t1;Parent=MS.gene00530.t1
chr1.2 exon 5368993 5369416 5368993 ID=MS.gene00530.t1.exon3;Parent=MS.gene00530.t1
chr1.2 CDS 5368993 5369416 5368993 ID=cds.MS.gene00530.t1;Parent=MS.gene00530.t1
chr1.2 exon 5367548 5368464 5367548 ID=MS.gene00530.t1.exon4;Parent=MS.gene00530.t1
chr1.2 CDS 5367548 5368464 5367548 ID=cds.MS.gene00530.t1;Parent=MS.gene00530.t1
chr1.2 exon 5367333 5367370 5367333 ID=MS.gene00530.t1.exon5;Parent=MS.gene00530.t1
chr1.2 CDS 5367333 5367370 5367333 ID=cds.MS.gene00530.t1;Parent=MS.gene00530.t1
Gene Sequence

>MS.gene00530

ATGGATCTTGGTGGAGTGAGTTTAGAAGGTTTGGTTAGTTCAGATCCTGAGTCAAAAAATAAATGGTACAACAACAATGGATCTGGTTTACTTAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTAAGAAGTTTCAAACTTGCAAAAACTGATCAACAAAGAAACTCTTCTTCACTTTTGAGATCTAATGCTACTACTACACTTTTTTCTTCTGATGGTCAACAACAAATGCTTAGTTTTTCAACTCCTACTTCAAAATCTGAATCTTTTTTACTTGACAAAACTACCCAAAATGCTGCATTGTCTTATGCTGCTTCTTACCATCCTATGTCTAGTTACAACAGAAATACAGGTACAACATTTTTTTTTTAGGTTGTTTTTTTTATCTATCAAAATATATAAATTAAAAAATTTATACATTTTGGATTTGGATATTTTTGTATGTATTTATGAATCTATATGGTATCCATTTGGGGAGCTAAAAAATTTATAAGGTTGTTATAGTTATAAGGTATGATTCTACAGTACTGTTGGAGGGTCTTTTCATGGAAATATATTTTTTGAGTGGTCTCATTTTTTAAGTCATGTCAAGAGATAAGGAACATAGGAGAAAAAATAAATTTTGTATTTTTATTTATTTATAATAAAATTCTTATCTTCTTCCTGTTTTAGGGAGATGGGTTTTGCTTAATTTTTGCACAGTATACTAGAGGGTACTAAAGAAGAAAAATTTATGAGCTATAATATGTAGGAAAAAAAAGCTACAAAATTTTGATTGGTTCTGTTCTGTACCATCTTTCTCTAAAAAATCTGTTCTTTCCTTTTCTACATCCTCCTTACATGAAAATAAATAAAAAAAATCTAAAAGTTGACTTGACTGTTATTATTTCTTCAAACTCAGAAAAAAATTATTAATTTTTTTTTTCTTCTTCAGACTATAGCCTTTTTTTTTGTTGTGTGCTCTTTTTGAGTTCTGAACTGAATCAACTTTTTTTGTGTTTTGGTTTTAAGTTCTGATTTTTTTTTGTTACCTTTTTTGACTTTACCTTGATGTTTGTTGAATACTGTTTGAACAGGTTATAGTTCTGGAAGCATGCATGGAGGACCATTTACACCTTCTCAATGGATGGAGTTGGAACATCAGGCTTTGATCTATAAGTACATCACTGCAAATGTTGCTGTACCTCATCATTTGCTTTTACCTATCAGAAAAGCCCTTGATTCTGCTGGCTTATCTAGCTTCTCAACTGCTCTCCTCAGACCAAATGCATGTATGTACAGTTAGTTCCCTTTTTCCTTGCCTAATTAATACTAACAAAGATAAACATTATTGGATTTTTTTTAATTAGAGACAAATAAAATGAAATTTGTCTCTGATTTGTCTTTTAATGTTAAAGATGTCAAAATTTTAGATTATTTTTTTTCCAATCATTTTGGTCCTTAAATTGAATGTGTGAGATTTTGTCACTGTAGTCCCTAAATGTACCAAAATTGCAAAAAGGGGCTAATGGAGGACACATACAAAGACCTGCACTAAACTATAAGAAACATATTCCAAGACTAAACTGATTTACAACTTGACAAGAGATACATTCAAGGATGTTTTTTGTAATTTTGGTTAATTTAAGGACTATAGTGATAGCGTGTCACACGTTCAAGGATCAAAATGCCCTTTGCATTATATTAGAAAATAAGGCCAAATCAAATTTGTGTTTGAAGGGATTAGTCTTCCACAGCGTAACAATTCACATATGAATCATTCAAAAGTCAATGTGGAAAAGTGATATGTGTTTTGTTTGTCTTTGAAAAAACAAATTGATCGTTGGTTGAAAACATGTCATGTGAGGTGGAGTAGTAATATGGAAAAGTGATTAGTGTTTTGTTTGTTTCTATGTTTTGCTTTTTTTAAATGATTGACCTTGATTGTTAGTTATCAACTACTTGATGTCATCAACTCATCATTGGTTGAAAACATTAAACATGTCATGTGAGGTGGTGGAGTGAGTAATATGTTTTTGATTGATGCAGTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGGAGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTTGATCAAAAGTACTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCTGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTACTACTTCAACCATTACTCCAAGTGGTTCATCAAAGCAGATCAATTCTGCTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTGGCAACACTGTTTCCAACACTCTTAGCTTTGCACACCAGGAACATTCCAAGAATATGAACAACCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGGTCAGAAAACTAGTGTTTTACAGTTTTATAGTTATTGTTTACTCCTTAATTTTGTTAAAAATAACTTTTTCAAATAAGAAAAATACCTATAGTACTAATCAATATGTAGGTAACATCTAATTACTCTACTATTTTTAATTACTTAATATTTTTTTAAAAAAACAAATTAGAGTGTCACGAGGGTTTTTCAAAGCCTGCGACTATGATCTGAGCCGTGGCATCATGTATTTTATGTCTCTATGACTGCTGTTGAGGCTGCATCAACCGTAATTGATTGTGATTCTCTACAATATCAAGAATTGTGACTGAACATCGTGATCATTATATTCCGTTATTCATTTAGGGACTACACTGTTTCAAAGTCATTATTGCAAGAAATGTACCAATGGAATGTGATTAGATTAGTGATTGTGTTCAAAACTATTTTTTTGCATTTTAAATTTTGTTACTTTTGTGTATAAGGGATAAATTCAGGAAATGTGCTTTTTCTATATTGTGTTTGAAAGTTTTTTTGTTTCTTGTTTGCAGGATGTTCATGAATAACAAAGAGAATAACAACACTAGTGAGAGGATGCAGGATGGTCCTGCACTACCAATGCTGCCACCCACTCTAGAGTTGAAACCAAAGGAAAATCAATCTTTCATGATTCAAAAGCAGCACATTTCATATGATGAGTCCTCGAGGAACAATGAATTCGGGTTTGTCACTTCCGATTCCCTTCTGAACCCTTCACAGAAAACCTCCACTTTGCTGGGAACCCGAACCTTCGGTTCATCTTCACAAAACCCTACAAACCGAGATGCAGGCTCTCAGCAATCCCTTAGGCATTTTATCGACGACTTTCCCAAAACTCACTCAGATCACCAACATCATAACCGCTCAGGTGGTTTTTCTTGGCCGGAGCTCGACATGCAGTCTGATAGGACACAACTATCAATTTCAACACCGATGACTTCCTCGGACTTCATGTCGTTCACGTCCTCCGCAACCAATGAAAAACTCACACTTTCACCTCTTAGGCTATCAAGAGAAATAGACCCTATTCAAATGGGGTTAGGTGTTGGAAGTAGTGCTCTCAATAACAACAATGAATCATCAAACACTAATACTACAAAGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGTGGTCCACTTGGAGAGGTTCTTCATCTTAGTAATACTATTACCTACAATGCAAATGATGATCACTATGGCAGAGGCAACAACAATTCGTCCGCCCTAAATCTCATGACTGATGGTTGGGACAATCACAATAGTCCTCCAATTGGATCATCGCCAACCGGAGTCCTTCAAAAGACTGCATTCGGATCACTTTCGAATAGTAGCGCCGGTAGTAGTCCAAGGGCAGAAAACAATAAAACAACTCAAGAAGGAGCTAGTTTGTGCAATGATCTTCTAGGATCAACTCTTGGTAATAATACTTCCTTTACTCCTTAGAGGAACAAGATGAAGAAGAAGAAGAAGAAAACAAAGAACTTTGTTCTTGTTCTTGACTTTAATTTATTGAGTTTTTTTTTTTTTTTTTTTTATATATGATGATATTACATTACATATATGGTTTATTTATTTATGTTTTCTGTTATTATAGTTGTTAATTACTACTATACCATACCAATGCCAACATGA
Protein sequence

>MS.gene00530.t1

MDLGGVSLEGLVSSDPESKNKWYNNNGSGLLKQERSGTCTEDELRSFKLAKTDQQRNSSSLLRSNATTTLFSSDGQQQMLSFSTPTSKSESFLLDKTTQNAALSYAASYHPMSSYNRNTGYSSGSMHGGPFTPSQWMELEHQALIYKYITANVAVPHHLLLPIRKALDSAGLSSFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTTTSTITPSGSSKQINSAAASPSSSIVVPGGNTVSNTLSFAHQEHSKNMNNLIGQDNASSAANTINRMFMNNKENNNTSERMQDGPALPMLPPTLELKPKENQSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKTSTLLGTRTFGSSSQNPTNRDAGSQQSLRHFIDDFPKTHSDHQHHNRSGGFSWPELDMQSDRTQLSISTPMTSSDFMSFTSSATNEKLTLSPLRLSREIDPIQMGLGVGSSALNNNNESSNTNTTKQANWIPITWESSMGGPLGEVLHLSNTITYNANDDHYGRGNNNSSALNLMTDGWDNHNSPPIGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDLLGSTLVVNYYYTIPMPT