AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005410.t1 MTR_1g085640 80.670 388 18 2 1 331 1 388 0.0 622
MS.gene005410.t1 MTR_7g110830 46.819 393 93 18 1 312 1 358 4.11e-85 261
MS.gene005410.t1 MTR_1g085040 32.010 403 163 15 1 329 1 366 1.12e-30 119
MS.gene005410.t1 MTR_4g105130 42.748 131 18 3 1 74 1 131 1.56e-21 94.4
MS.gene005410.t1 MTR_3g077110 49.425 87 37 3 12 94 65 148 3.99e-17 81.6
MS.gene005410.t1 MTR_1g112760 55.385 65 25 1 12 72 66 130 5.09e-17 79.3
MS.gene005410.t1 MTR_7g076740 52.174 69 27 2 12 75 66 133 1.09e-15 76.6
MS.gene005410.t1 MTR_7g111290 42.446 139 23 3 1 82 1 139 1.65e-15 77.0
MS.gene005410.t1 MTR_4g073420 50.000 68 30 1 12 75 65 132 1.79e-15 75.9
MS.gene005410.t1 MTR_2g064160 34.615 130 27 3 1 73 1 129 2.52e-15 75.9
MS.gene005410.t1 MTR_2g089620 52.239 67 28 1 9 71 62 128 2.94e-15 75.9
MS.gene005410.t1 MTR_8g031360 55.224 67 24 2 12 73 67 132 3.78e-15 75.1
MS.gene005410.t1 MTR_6g009430 31.818 132 33 2 1 75 1 132 7.00e-15 74.7
MS.gene005410.t1 MTR_4g091490 53.125 64 26 1 12 71 66 129 7.00e-15 75.1
MS.gene005410.t1 MTR_2g011660 53.125 64 26 1 12 71 66 129 8.45e-15 74.7
MS.gene005410.t1 MTR_8g095390 52.941 68 28 2 12 75 65 132 1.01e-14 73.9
MS.gene005410.t1 MTR_3g045430 59.016 61 22 1 18 75 73 133 1.11e-14 73.9
MS.gene005410.t1 MTR_4g478180 53.125 64 26 2 12 71 66 129 1.98e-14 73.6
MS.gene005410.t1 MTR_5g007370 50.746 67 29 1 12 74 65 131 2.11e-14 73.2
MS.gene005410.t1 MTR_3g074520 50.725 69 28 2 12 75 65 132 3.14e-14 72.8
MS.gene005410.t1 MTR_5g078140 53.731 67 25 2 12 73 65 130 3.29e-14 72.8
MS.gene005410.t1 MTR_3g461490 51.471 68 29 1 12 75 65 132 3.69e-14 72.4
MS.gene005410.t1 MTR_7g111290 56.410 78 30 2 9 82 20 97 7.74e-14 71.6
MS.gene005410.t1 MTR_7g011170 52.239 67 28 2 12 74 65 131 9.80e-14 71.2
MS.gene005410.t1 MTR_3g065440 55.224 67 24 2 12 73 65 130 1.02e-13 71.2
MS.gene005410.t1 MTR_3g083540 50.000 68 30 2 9 72 91 158 1.18e-13 70.9
MS.gene005410.t1 MTR_4g102380 49.254 67 30 1 12 74 65 131 1.50e-13 70.1
MS.gene005410.t1 MTR_4g082290 54.688 64 25 2 12 71 65 128 1.66e-13 71.2
MS.gene005410.t1 MTR_4g082230 54.688 64 25 2 12 71 65 128 1.69e-13 71.2
MS.gene005410.t1 MTR_5g029840 47.761 67 31 1 12 74 65 131 3.64e-13 69.7
MS.gene005410.t1 MTR_5g042030 56.061 66 25 2 12 73 60 125 4.67e-13 68.9
MS.gene005410.t1 MTR_4g065017 54.386 57 20 2 9 60 67 122 1.12e-12 68.2
MS.gene005410.t1 MTR_3g097450 46.269 67 32 1 12 74 65 131 1.68e-12 67.4
MS.gene005410.t1 MTR_6g012690 51.562 64 27 2 12 71 65 128 1.80e-12 67.8
MS.gene005410.t1 MTR_3g028740 55.357 56 21 1 9 60 72 127 4.43e-12 66.6
MS.gene005410.t1 MTR_8g098860 32.203 118 23 2 1 61 1 118 1.47e-11 64.7
MS.gene005410.t1 MTR_2g097910 54.717 53 20 1 12 60 73 125 3.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005410.t1 AT4G01680 48.026 152 21 3 1 95 1 151 3.83e-33 125
MS.gene005410.t1 AT1G09540 26.555 418 163 14 1 329 1 363 9.50e-27 108
MS.gene005410.t1 AT4G01680 42.105 152 30 4 1 95 1 151 5.49e-25 101
MS.gene005410.t1 AT1G57560 29.758 289 134 9 1 221 1 288 1.76e-24 101
MS.gene005410.t1 AT4G01680 56.818 88 33 3 12 95 77 163 4.62e-22 95.5
MS.gene005410.t1 AT4G01680 76.744 43 5 1 1 38 1 43 3.84e-14 72.8
MS.gene005410.t1 AT1G57560 42.105 133 20 3 1 76 1 133 5.85e-22 94.0
MS.gene005410.t1 AT5G26660 41.860 129 18 3 1 72 1 129 1.06e-21 94.7
MS.gene005410.t1 AT5G26660 61.538 65 21 2 12 72 34 98 2.87e-19 87.4
MS.gene005410.t1 AT5G60890 52.703 74 31 2 12 81 65 138 1.50e-17 82.0
MS.gene005410.t1 AT5G16600 52.564 78 33 1 12 85 65 142 2.15e-17 82.0
MS.gene005410.t1 AT1G66230 51.250 80 35 1 12 87 65 144 9.82e-17 79.3
MS.gene005410.t1 AT1G74430 51.562 64 27 1 12 71 65 128 1.54e-16 79.0
MS.gene005410.t1 AT5G10280 48.052 77 36 1 3 75 56 132 2.85e-16 79.0
MS.gene005410.t1 AT1G74430 72.093 43 12 0 29 71 17 59 4.48e-16 76.3
MS.gene005410.t1 AT5G61420 53.425 73 30 2 9 77 62 134 7.90e-16 77.8
MS.gene005410.t1 AT4G28110 47.619 84 30 2 2 71 45 128 2.53e-15 75.5
MS.gene005410.t1 AT3G61250 36.434 129 25 2 1 72 1 129 2.86e-15 75.5
MS.gene005410.t1 AT4G05100 54.688 64 25 1 12 71 66 129 3.63e-15 75.5
MS.gene005410.t1 AT4G21440 53.125 64 26 1 12 71 65 128 4.19e-15 75.5
MS.gene005410.t1 AT5G61420 70.213 47 14 0 31 77 9 55 4.42e-15 74.7
MS.gene005410.t1 AT5G07700 41.525 118 50 4 9 107 62 179 6.71e-15 75.1
MS.gene005410.t1 AT5G07700 41.525 118 50 4 9 107 62 179 6.71e-15 75.1
MS.gene005410.t1 AT5G65230 48.684 76 35 2 3 74 56 131 1.00e-14 73.9
MS.gene005410.t1 AT1G18710 48.529 68 31 2 9 72 62 129 1.05e-14 73.6
MS.gene005410.t1 AT1G18570 51.515 66 28 1 12 73 66 131 1.38e-14 74.3
MS.gene005410.t1 AT4G28110 70.732 41 12 0 31 71 4 44 1.50e-14 71.6
MS.gene005410.t1 AT4G34990 50.746 67 29 1 12 74 65 131 2.21e-14 72.8
MS.gene005410.t1 AT5G07690 51.282 78 34 2 9 82 62 139 2.32e-14 73.2
MS.gene005410.t1 AT3G12720 33.333 126 26 3 1 69 12 136 2.41e-14 73.2
MS.gene005410.t1 AT1G34670 50.000 72 30 2 9 75 62 132 2.44e-14 73.6
MS.gene005410.t1 AT5G15310 64.000 50 18 0 25 74 3 52 2.88e-14 72.0
MS.gene005410.t1 AT3G13540 57.143 63 24 1 13 72 78 140 2.99e-14 72.0
MS.gene005410.t1 AT4G17785 52.239 67 28 2 9 71 63 129 3.26e-14 73.2
MS.gene005410.t1 AT4G17785 52.239 67 28 2 9 71 63 129 3.62e-14 72.8
MS.gene005410.t1 AT5G16770 49.254 67 30 1 12 74 65 131 5.09e-14 72.4
MS.gene005410.t1 AT5G16770 49.254 67 30 1 12 74 65 131 5.09e-14 72.4
MS.gene005410.t1 AT5G56110 68.889 45 14 0 31 75 88 132 6.13e-14 72.0
MS.gene005410.t1 AT4G38620 47.761 67 31 1 12 74 65 131 6.62e-14 71.2
MS.gene005410.t1 AT5G16770 49.254 67 30 1 12 74 65 131 7.23e-14 72.0
MS.gene005410.t1 AT5G16770 49.254 67 30 1 12 74 65 131 7.23e-14 72.0
MS.gene005410.t1 AT4G22680 52.239 67 28 2 12 74 65 131 7.66e-14 70.9
MS.gene005410.t1 AT2G16720 50.746 67 29 1 12 74 65 131 8.09e-14 70.9
MS.gene005410.t1 AT3G02940 47.761 67 31 1 12 74 65 131 8.57e-14 71.2
MS.gene005410.t1 AT3G02940 47.761 67 31 1 12 74 65 131 1.12e-13 71.2
MS.gene005410.t1 AT3G02940 47.761 67 31 1 12 74 65 131 1.12e-13 71.2
MS.gene005410.t1 AT5G14340 39.759 83 47 1 31 113 10 89 1.54e-13 68.6
MS.gene005410.t1 AT1G22640 47.761 67 31 1 12 74 8 74 2.31e-13 68.6
MS.gene005410.t1 AT4G09460 38.318 107 62 1 12 114 65 171 2.43e-13 68.9
MS.gene005410.t1 AT5G54230 46.575 73 35 1 3 71 56 128 4.11e-13 69.3
MS.gene005410.t1 AT5G14340 37.500 104 59 2 13 113 79 179 4.47e-13 68.9
MS.gene005410.t1 AT5G15310 70.455 44 13 0 31 74 88 131 6.81e-13 68.9
MS.gene005410.t1 AT5G15310 70.455 44 13 0 31 74 88 131 7.36e-13 68.9
MS.gene005410.t1 AT4G12350 50.000 68 30 2 12 75 65 132 7.64e-13 68.2
MS.gene005410.t1 AT5G15310 70.455 44 13 0 31 74 88 131 7.99e-13 67.8
MS.gene005410.t1 AT1G22640 47.761 67 31 1 12 74 65 131 1.68e-12 67.0
MS.gene005410.t1 AT5G12870 55.556 54 20 1 12 61 71 124 1.77e-12 67.4
MS.gene005410.t1 AT5G62320 44.595 74 37 1 12 81 73 146 3.38e-12 65.9
MS.gene005410.t1 AT1G74080 49.231 65 29 1 12 72 65 129 3.48e-12 67.0
MS.gene005410.t1 AT1G63910 31.250 128 31 2 1 71 1 128 6.60e-12 66.2
MS.gene005410.t1 AT3G01140 50.794 63 27 2 12 70 65 127 8.08e-12 65.9
MS.gene005410.t1 AT3G01140 50.794 63 27 2 12 70 108 170 9.45e-12 65.9
MS.gene005410.t1 AT1G22640 50.000 54 27 0 21 74 6 59 2.02e-11 62.4
MS.gene005410.t1 AT1G35515 61.364 44 17 0 31 74 88 131 3.06e-11 62.8
MS.gene005410.t1 AT3G08500 56.140 57 19 2 9 60 80 135 3.31e-11 63.9
MS.gene005410.t1 AT3G28470 44.444 90 43 3 9 91 62 151 5.05e-11 63.2

Find 52 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGAAATAAAGAATTTA+TGG 0.200655 1.1:-63392531 MS.gene005410:CDS
TTCTTCTTGGGGAGGATTAA+TGG 0.211991 1.1:-63391930 MS.gene005410:CDS
ATTGTTGTTATGTAAGTTTA+AGG 0.238149 1.1:+63391955 None:intergenic
ATTTCCATTGCATATGCTTT+TGG 0.239502 1.1:+63392289 None:intergenic
TTTCAAAAGGTTCAATTCAT+TGG 0.290203 1.1:+63392375 None:intergenic
CAGAAACTCAGAGAAGCTTT+TGG 0.294526 1.1:-63391698 MS.gene005410:CDS
GAGAATAATGGAGAGGAAAA+TGG 0.306414 1.1:-63392436 MS.gene005410:CDS
CATTCAACCCTCAGATTTGA+TGG 0.319312 1.1:-63392227 MS.gene005410:CDS
AACTTTGTACCAGATAGTTT+TGG 0.328603 1.1:-63391794 MS.gene005410:CDS
CTACTAGTGTTTGAATCATT+TGG 0.336320 1.1:+63392154 None:intergenic
TCAGAAGCAAGCATTAAGAT+AGG 0.337065 1.1:+63391851 None:intergenic
TCAAATTGCGGCGCAATTGC+CGG 0.343894 1.1:-63392563 MS.gene005410:CDS
AAGAAGAGACTGAGACAAAA+AGG 0.366324 1.1:-63392496 MS.gene005410:CDS
AAAATAGCTCCAAAACTATC+TGG 0.372468 1.1:+63391785 None:intergenic
AACCATTGGTTCAACCAAAC+TGG 0.373334 1.1:-63392130 MS.gene005410:CDS
CAAATTGCGGCGCAATTGCC+GGG 0.376424 1.1:-63392562 MS.gene005410:CDS
CTGTCTGAGATTGAGAATAA+TGG 0.401604 1.1:-63392448 MS.gene005410:CDS
AAAAGCATATGCAATGGAAA+TGG 0.406668 1.1:-63392287 MS.gene005410:CDS
TCTGAGTTTCTGAATGTCCT+TGG 0.406727 1.1:+63391709 None:intergenic
TCTTGTTCTTGCTTTGTATG+AGG 0.413126 1.1:+63391761 None:intergenic
TTGAACTCTCTGATTTCAAA+AGG 0.423755 1.1:+63392362 None:intergenic
GTTGTTACAAGCAGAAGCTT+AGG 0.455012 1.1:-63393080 MS.gene005410:CDS
TTCCAGTTTGGTTGAACCAA+TGG 0.463181 1.1:+63392128 None:intergenic
CATGGTTGTTGATGTTGTTG+TGG 0.467386 1.1:+63392066 None:intergenic
TCATTGGATAATAATATCTC+TGG 0.476615 1.1:+63392391 None:intergenic
ATGGTTGTTGATGTTGTTGT+GGG 0.482724 1.1:+63392067 None:intergenic
TTTGTATAACTCATTTGAAG+TGG 0.483418 1.1:+63392196 None:intergenic
CAGAAGCAAGCATTAAGATA+GGG 0.504178 1.1:+63391852 None:intergenic
TCTGGTACAAAGTTCATCAA+TGG 0.513100 1.1:+63391803 None:intergenic
ATTTCATTGTCTGTCCTCCC+CGG 0.513376 1.1:+63392544 None:intergenic
AGAAGCTTAGGAAAGGTCTA+TGG 0.519654 1.1:-63393068 MS.gene005410:CDS
GACAGTGGTTTATGAGTCAC+AGG 0.523245 1.1:+63392466 None:intergenic
AAAATTTCCCATCAAATCTG+AGG 0.537811 1.1:+63392219 None:intergenic
ATTCAACCCTCAGATTTGAT+GGG 0.538604 1.1:-63392226 MS.gene005410:CDS
TTATTCTCAATCTCAGACAG+TGG 0.563023 1.1:+63392451 None:intergenic
TCATACAGAAGAAGCTAAGT+GGG 0.564291 1.1:-63391903 MS.gene005410:CDS
TTCACCAAAAGCATATGCAA+TGG 0.574736 1.1:-63392293 MS.gene005410:CDS
ATCATACAGAAGAAGCTAAG+TGG 0.575317 1.1:-63391904 MS.gene005410:CDS
TATCAGATGGTCTCAAATTG+CGG 0.579070 1.1:-63392575 MS.gene005410:intron
AGGAAAATTCACAAATGGGA+AGG 0.581895 1.1:-63393110 None:intergenic
TTGCGGCGCAATTGCCGGGG+AGG 0.583739 1.1:-63392558 MS.gene005410:CDS
CTCTGTGGAAACATTGTCAG+AGG 0.587422 1.1:+63392000 None:intergenic
AAATTTCCCATCAAATCTGA+GGG 0.588053 1.1:+63392220 None:intergenic
CAAACACTAGTAGTAACCAT+TGG 0.594685 1.1:-63392144 MS.gene005410:CDS
GCATATGCAATGGAAATGGA+AGG 0.607612 1.1:-63392283 MS.gene005410:CDS
TACAAGCAGAAGCTTAGGAA+AGG 0.614815 1.1:-63393075 MS.gene005410:CDS
GGTACAAAGTTCATCAATGG+AGG 0.632864 1.1:+63391806 None:intergenic
GCTGCTAGTTCTCATCTCTG+TGG 0.644097 1.1:+63391985 None:intergenic
AAATTGCGGCGCAATTGCCG+GGG 0.649843 1.1:-63392561 MS.gene005410:CDS
TGAGATTGAGAATAATGGAG+AGG 0.653412 1.1:-63392443 MS.gene005410:CDS
TCTGTGGAAACATTGTCAGA+GGG 0.661164 1.1:+63392001 None:intergenic
AAAAGAATTAGGAAGAAACA+TGG 0.684494 1.1:+63392048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATATGCTAA+TGG + chr1.1:63391845-63391864 None:intergenic 10.0%
!!! AATTTTTGTTTATTATTATC+AGG - chr1.1:63391907-63391926 MS.gene005410:CDS 10.0%
!! ACAATGAAATAAAGAATTTA+TGG - chr1.1:63392253-63392272 MS.gene005410:CDS 15.0%
!!! AACTTCTAATATATTTTCCA+AGG - chr1.1:63393058-63393077 MS.gene005410:CDS 20.0%
!!! ATAACAACAATTTTTCTTCT+TGG - chr1.1:63392841-63392860 MS.gene005410:intron 20.0%
!!! ATTGTTGTTATGTAAGTTTA+AGG + chr1.1:63392832-63392851 None:intergenic 20.0%
!!! TAACAACAATTTTTCTTCTT+GGG - chr1.1:63392842-63392861 MS.gene005410:intron 20.0%
! AAAAGAATTAGGAAGAAACA+TGG + chr1.1:63392739-63392758 None:intergenic 25.0%
! CCATAGGAGAAAATAAAAAA+AGG + chr1.1:63392086-63392105 None:intergenic 25.0%
! TCATTGGATAATAATATCTC+TGG + chr1.1:63392396-63392415 None:intergenic 25.0%
! TTAAGACCTGATTTAAAAAG+AGG - chr1.1:63391976-63391995 MS.gene005410:CDS 25.0%
! TTTCAAAAGGTTCAATTCAT+TGG + chr1.1:63392412-63392431 None:intergenic 25.0%
! TTTGTATAACTCATTTGAAG+TGG + chr1.1:63392591-63392610 None:intergenic 25.0%
!! AACAACAATTTTTCTTCTTG+GGG - chr1.1:63392843-63392862 MS.gene005410:intron 25.0%
!! AATGTTCCTCTTTTTAAATC+AGG + chr1.1:63391985-63392004 None:intergenic 25.0%
!! ACAAAGAGTTTTTCATAGAT+AGG - chr1.1:63392532-63392551 MS.gene005410:CDS 25.0%
!! TATCAAAAGATTTTCCAGTT+TGG + chr1.1:63392671-63392690 None:intergenic 25.0%
!! TTCATTTTCTTCTTATCAGA+TGG - chr1.1:63392196-63392215 MS.gene005410:CDS 25.0%
!!! CCTTTTTTTATTTTCTCCTA+TGG - chr1.1:63392083-63392102 MS.gene005410:CDS 25.0%
AAAATAGCTCCAAAACTATC+TGG + chr1.1:63393002-63393021 None:intergenic 30.0%
AAAATTTCCCATCAAATCTG+AGG + chr1.1:63392568-63392587 None:intergenic 30.0%
AAATTTCCCATCAAATCTGA+GGG + chr1.1:63392567-63392586 None:intergenic 30.0%
AAGAAGATGAAAAACTACTG+AGG - chr1.1:63391746-63391765 MS.gene005410:CDS 30.0%
CATATAACAAAGTATGGTCA+TGG - chr1.1:63391769-63391788 MS.gene005410:CDS 30.0%
CTACTAGTGTTTGAATCATT+TGG + chr1.1:63392633-63392652 None:intergenic 30.0%
TTGAACTCTCTGATTTCAAA+AGG + chr1.1:63392425-63392444 None:intergenic 30.0%
TTGTTGCAGCAAAAAGAATT+AGG + chr1.1:63392750-63392769 None:intergenic 30.0%
! AAAAGCATATGCAATGGAAA+TGG - chr1.1:63392497-63392516 MS.gene005410:CDS 30.0%
! AACTTTGTACCAGATAGTTT+TGG - chr1.1:63392990-63393009 MS.gene005410:intron 30.0%
! AGTAGTTTTTCATCTTCTTC+TGG + chr1.1:63391745-63391764 None:intergenic 30.0%
! ATTTCCATTGCATATGCTTT+TGG + chr1.1:63392498-63392517 None:intergenic 30.0%
AAGAAGAGACTGAGACAAAA+AGG - chr1.1:63392288-63392307 MS.gene005410:CDS 35.0%
ATCATACAGAAGAAGCTAAG+TGG - chr1.1:63392880-63392899 MS.gene005410:intron 35.0%
ATGGTTAAGCAAGAGTGATA+AGG - chr1.1:63392102-63392121 MS.gene005410:CDS 35.0%
ATGGTTGTTGATGTTGTTGT+GGG + chr1.1:63392720-63392739 None:intergenic 35.0%
ATTCAACCCTCAGATTTGAT+GGG - chr1.1:63392558-63392577 MS.gene005410:CDS 35.0%
CAAACACTAGTAGTAACCAT+TGG - chr1.1:63392640-63392659 MS.gene005410:intron 35.0%
CAGAAGCAAGCATTAAGATA+GGG + chr1.1:63392935-63392954 None:intergenic 35.0%
CTGAGGCATATAACAAAGTA+TGG - chr1.1:63391763-63391782 MS.gene005410:CDS 35.0%
GATAATTTACCTGCTTGCTT+AGG + chr1.1:63391811-63391830 None:intergenic 35.0%
TATCACTCTTGCTTAACCAT+AGG + chr1.1:63392102-63392121 None:intergenic 35.0%
TATCAGATGGTCTCAAATTG+CGG - chr1.1:63392209-63392228 MS.gene005410:CDS 35.0%
TCAGAAGCAAGCATTAAGAT+AGG + chr1.1:63392936-63392955 None:intergenic 35.0%
TCATACAGAAGAAGCTAAGT+GGG - chr1.1:63392881-63392900 MS.gene005410:intron 35.0%
TCTGGTACAAAGTTCATCAA+TGG + chr1.1:63392984-63393003 None:intergenic 35.0%
TCTTGTTCTTGCTTTGTATG+AGG + chr1.1:63393026-63393045 None:intergenic 35.0%
TTATCAGGTTTGCAAAGATG+TGG - chr1.1:63391922-63391941 MS.gene005410:CDS 35.0%
TTATTCTCAATCTCAGACAG+TGG + chr1.1:63392336-63392355 None:intergenic 35.0%
TTGAACTTCATGCAGTACTA+GGG - chr1.1:63392031-63392050 MS.gene005410:CDS 35.0%
! AACAATTTTTCTTCTTGGGG+AGG - chr1.1:63392846-63392865 MS.gene005410:intron 35.0%
! CTGTCTGAGATTGAGAATAA+TGG - chr1.1:63392336-63392355 MS.gene005410:CDS 35.0%
! GAGAATAATGGAGAGGAAAA+TGG - chr1.1:63392348-63392367 MS.gene005410:CDS 35.0%
! TGAGATTGAGAATAATGGAG+AGG - chr1.1:63392341-63392360 MS.gene005410:CDS 35.0%
! TTCACCAAAAGCATATGCAA+TGG - chr1.1:63392491-63392510 MS.gene005410:CDS 35.0%
AAGAGGAACATTCTCACAAG+AGG - chr1.1:63391993-63392012 MS.gene005410:CDS 40.0%
AGAAGCTTAGGAAAGGTCTA+TGG - chr1.1:63391716-63391735 MS.gene005410:CDS 40.0%
CAAAGTATGGTCATGGATGT+TGG - chr1.1:63391776-63391795 MS.gene005410:CDS 40.0%
CATGGTTGTTGATGTTGTTG+TGG + chr1.1:63392721-63392740 None:intergenic 40.0%
CATTCAACCCTCAGATTTGA+TGG - chr1.1:63392557-63392576 MS.gene005410:CDS 40.0%
GCATATGCAATGGAAATGGA+AGG - chr1.1:63392501-63392520 MS.gene005410:CDS 40.0%
GGTACAAAGTTCATCAATGG+AGG + chr1.1:63392981-63393000 None:intergenic 40.0%
GTTAAGCAAGAGTGATAAGG+AGG - chr1.1:63392105-63392124 MS.gene005410:CDS 40.0%
GTTGAACTTCATGCAGTACT+AGG - chr1.1:63392030-63392049 MS.gene005410:CDS 40.0%
GTTGTTACAAGCAGAAGCTT+AGG - chr1.1:63391704-63391723 MS.gene005410:CDS 40.0%
TACAAGCAGAAGCTTAGGAA+AGG - chr1.1:63391709-63391728 MS.gene005410:CDS 40.0%
TCTGAGTTTCTGAATGTCCT+TGG + chr1.1:63393078-63393097 None:intergenic 40.0%
TCTGTGGAAACATTGTCAGA+GGG + chr1.1:63392786-63392805 None:intergenic 40.0%
TTCATGCAGTACTAGGGAAT+AGG - chr1.1:63392037-63392056 MS.gene005410:CDS 40.0%
TTCCAGTTTGGTTGAACCAA+TGG + chr1.1:63392659-63392678 None:intergenic 40.0%
TTCTTCTTGGGGAGGATTAA+TGG - chr1.1:63392854-63392873 MS.gene005410:intron 40.0%
! CAGAAACTCAGAGAAGCTTT+TGG - chr1.1:63393086-63393105 MS.gene005410:CDS 40.0%
!! AACCATTGGTTCAACCAAAC+TGG - chr1.1:63392654-63392673 MS.gene005410:intron 40.0%
AAAGATGTGGTAAGAGCTGC+AGG - chr1.1:63391935-63391954 MS.gene005410:CDS 45.0%
AAGAGTGATAAGGAGGTCGA+GGG - chr1.1:63392112-63392131 MS.gene005410:CDS 45.0%
AGTTCAGTACCTAAGCAAGC+AGG - chr1.1:63391799-63391818 MS.gene005410:CDS 45.0%
ATTTCATTGTCTGTCCTCCC+CGG + chr1.1:63392243-63392262 None:intergenic 45.0%
CTCTGTGGAAACATTGTCAG+AGG + chr1.1:63392787-63392806 None:intergenic 45.0%
GACAGTGGTTTATGAGTCAC+AGG + chr1.1:63392321-63392340 None:intergenic 45.0%
CAAGAGTGATAAGGAGGTCG+AGG - chr1.1:63392111-63392130 MS.gene005410:CDS 50.0%
TCAAATTGCGGCGCAATTGC+CGG - chr1.1:63392221-63392240 MS.gene005410:CDS 50.0%
! GCTGCTAGTTCTCATCTCTG+TGG + chr1.1:63392802-63392821 None:intergenic 50.0%
AAATTGCGGCGCAATTGCCG+GGG - chr1.1:63392223-63392242 MS.gene005410:CDS 55.0%
CAAATTGCGGCGCAATTGCC+GGG - chr1.1:63392222-63392241 MS.gene005410:CDS 55.0%
GTAAGAGCTGCAGGCTTAGG+TGG - chr1.1:63391944-63391963 MS.gene005410:CDS 55.0%
GTGGTAAGAGCTGCAGGCTT+AGG - chr1.1:63391941-63391960 MS.gene005410:CDS 55.0%
CGAGGGCTCGATCTCACTCT+CGG - chr1.1:63392129-63392148 MS.gene005410:CDS 60.0%
TTGCGGCGCAATTGCCGGGG+AGG - chr1.1:63392226-63392245 MS.gene005410:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 63391688 63393118 63391688 ID=MS.gene005410
chr1.1 mRNA 63391688 63393118 63391688 ID=MS.gene005410.t1;Parent=MS.gene005410
chr1.1 exon 63393027 63393118 63393027 ID=MS.gene005410.t1.exon1;Parent=MS.gene005410.t1
chr1.1 CDS 63393027 63393118 63393027 ID=cds.MS.gene005410.t1;Parent=MS.gene005410.t1
chr1.1 exon 63391688 63392591 63391688 ID=MS.gene005410.t1.exon2;Parent=MS.gene005410.t1
chr1.1 CDS 63391688 63392591 63391688 ID=cds.MS.gene005410.t1;Parent=MS.gene005410.t1
Gene Sequence

>MS.gene005410

ATGGGAAGGCACTCATGTTGTTACAAGCAGAAGCTTAGGAAAGGTCTATGGTCACCAGAAGAAGATGAAAAACTACTGAGGCATATAACAAAGTATGGTCATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTAAATTATCAAATTCTATCTCCATTAGCATATAATAATAATAATGTTAAAATTGTTATTAAATTATTAATCATCTATTATTTTTGAATTTTTGTTTATTATTATCAGGTTTGCAAAGATGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTCTCACAAGAGGAAGAAAATCTCATTGTTGAACTTCATGCAGTACTAGGGAATAGGTAAATTTCAACTGCTAACTCAGTCCTTTTTTTATTTTCTCCTATGGTTAAGCAAGAGTGATAAGGAGGTCGAGGGCTCGATCTCACTCTCGGTATAATACTAACAATATTAATATCGTCAGTTTTAAAAAATTATGTTCATTTTCTTCTTATCAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGGACAGACAATGAAATAAAGAATTTATGGAACTCTTGTTTGAAGAAGAGACTGAGACAAAAAGGTATAGATCCTGTGACTCATAAACCACTGTCTGAGATTGAGAATAATGGAGAGGAAAATGGTAATAAGAGTCAAGAGAAAGCACCAGAGATATTATTATCCAATGAATTGAACCTTTTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTAGCTATGAGCAGAGAACAACATCTTCAATTTCACCAAAAGCATATGCAATGGAAATGGAAGGTTCTTGCAACAAAGAGTTTTTCATAGATAGGTTCATTCAACCCTCAGATTTGATGGGAAATTTTCCACTTCAAATGAGTTATACAAACACTGAAAATGATTGTTTACCAAATGATTCAAACACTAGTAGTAACCATTGGTTCAACCAAACTGGAAAATCTTTTGATATGAATACTGATCAGTTTCATTTCAATCCCACAACAACATCAACAACCATGTTTCTTCCTAATTCTTTTTGCTGCAACAATTCTCTTGATATTCCCTCTGACAATGTTTCCACAGAGATGAGAACTAGCAGCAGCAACACCTTAAACTTACATAACAACAATTTTTCTTCTTGGGGAGGATTAATGGAAAATCATACAGAAGAAGCTAAGTGGGATAATAACAATAATAACTACTTTCAAAACCCTATCTTAATGCTTGCTTCTGAATCTTTATGCAATGAGATAAAGCCTCCATTGATGAACTTTGTACCAGATAGTTTTGGAGCTATTTTACCTCATACAAAGCAAGAACAAGAACAGTCACAAACAACTTCTAATATATTTTCCAAGGACATTCAGAAACTCAGAGAAGCTTTTGGAGATATGTGA
Protein sequence

>MS.gene005410.t1

MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQKGIDPVTHKPLSEIENNGEENGNKSQEKAPEILLSNELNLLKSESSKSDAASSYEQRTTSSISPKAYAMEMEGSCNKEFFIDRFIQPSDLMGNFPLQMSYTNTENDCLPNDSNTSSNHWFNQTGKSFDMNTDQFHFNPTTTSTTMFLPNSFCCNNSLDIPSDNVSTEMRTSSSNTLNLHNNNFSSWGGLMENHTEEAKWDNNNNNYFQNPILMLASESLCNEIKPPLMNFVPDSFGAILPHTKQEQEQSQTTSNIFSKDIQKLREAFGDM