AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00543

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00543.t1 MTR_1g017350 98.361 427 6 1 1 427 1 426 0.0 856
MS.gene00543.t1 MTR_1g017350 97.658 427 6 2 1 427 1 423 0.0 845
MS.gene00543.t1 MTR_1g017350 98.104 422 7 1 1 422 1 421 0.0 845
MS.gene00543.t1 MTR_1g017350 97.393 422 7 2 1 422 1 418 0.0 835
MS.gene00543.t1 MTR_5g048860 55.000 200 62 5 196 391 300 475 7.52e-56 194
MS.gene00543.t1 MTR_8g065740 42.405 316 127 10 105 391 126 415 1.43e-55 191
MS.gene00543.t1 MTR_3g116770 48.558 208 76 4 233 409 163 370 8.80e-51 176
MS.gene00543.t1 MTR_7g053410 39.752 322 152 8 75 355 91 411 1.17e-50 179
MS.gene00543.t1 MTR_7g053410 39.752 322 152 8 75 355 91 411 1.58e-50 179
MS.gene00543.t1 MTR_3g116770 46.890 209 79 4 233 409 163 371 1.82e-50 176
MS.gene00543.t1 MTR_8g012290 38.418 354 161 15 88 391 81 427 2.55e-47 169
MS.gene00543.t1 MTR_8g012290 38.418 354 161 15 88 391 81 427 2.64e-47 169
MS.gene00543.t1 MTR_4g070320 52.500 160 71 2 194 348 71 230 2.68e-44 157
MS.gene00543.t1 MTR_8g062240 47.475 198 96 4 171 360 53 250 1.45e-42 151
MS.gene00543.t1 MTR_3g498825 66.981 106 32 1 243 345 129 234 2.27e-40 147
MS.gene00543.t1 MTR_8g099880 73.626 91 21 1 258 345 142 232 9.05e-40 145
MS.gene00543.t1 MTR_7g092510 68.041 97 31 0 250 346 162 258 1.55e-39 145
MS.gene00543.t1 MTR_5g037250 60.484 124 44 2 209 332 65 183 1.80e-38 139
MS.gene00543.t1 MTR_1g059270 61.165 103 40 0 250 352 149 251 1.92e-38 139
MS.gene00543.t1 MTR_1g059270 63.918 97 35 0 250 346 149 245 4.41e-37 138
MS.gene00543.t1 MTR_6g084120 52.000 100 38 2 241 340 136 225 4.31e-24 101
MS.gene00543.t1 MTR_4g131160 60.241 83 32 1 244 326 179 260 2.56e-22 98.6
MS.gene00543.t1 MTR_4g131160 60.241 83 32 1 244 326 182 263 2.80e-22 98.6
MS.gene00543.t1 MTR_1g080890 67.164 67 21 1 260 326 192 257 7.88e-21 93.6
MS.gene00543.t1 MTR_4g033295 58.462 65 27 0 261 325 118 182 1.89e-16 77.8
MS.gene00543.t1 MTR_2g098310 47.126 87 38 1 247 325 310 396 2.55e-16 80.9
MS.gene00543.t1 MTR_4g033295 56.716 67 28 1 261 326 118 184 2.67e-16 77.0
MS.gene00543.t1 MTR_1g052470 52.055 73 35 0 259 331 296 368 5.57e-16 79.7
MS.gene00543.t1 MTR_7g092540 52.113 71 34 0 261 331 243 313 7.18e-16 78.6
MS.gene00543.t1 MTR_4g065870 56.716 67 29 0 259 325 353 419 7.55e-16 79.3
MS.gene00543.t1 MTR_2g098310 47.674 86 37 1 247 324 310 395 8.27e-16 79.3
MS.gene00543.t1 MTR_1g084980 47.945 73 37 1 263 335 464 535 1.46e-15 79.3
MS.gene00543.t1 MTR_7g092540 54.688 64 29 0 261 324 243 306 3.98e-15 76.3
MS.gene00543.t1 MTR_1g070870 51.579 95 45 1 232 326 91 184 4.29e-15 75.9
MS.gene00543.t1 MTR_4g065870 58.065 62 26 0 261 322 355 416 4.42e-15 77.0
MS.gene00543.t1 MTR_1g069155 52.174 69 32 1 263 331 319 386 6.08e-15 77.0
MS.gene00543.t1 MTR_1g070870 65.672 67 22 1 260 326 122 187 1.86e-14 73.9
MS.gene00543.t1 MTR_7g099540 40.952 105 58 2 230 331 218 321 2.58e-14 75.1
MS.gene00543.t1 MTR_3g449770 41.284 109 59 3 222 326 266 373 7.77e-14 73.6
MS.gene00543.t1 MTR_3g028520 47.761 67 35 0 259 325 320 386 7.37e-13 70.1
MS.gene00543.t1 MTR_3g027650 47.761 67 35 0 259 325 320 386 7.37e-13 70.1
MS.gene00543.t1 MTR_7g099540 40.000 100 56 2 230 326 218 316 8.79e-13 70.1
MS.gene00543.t1 MTR_7g110810 48.387 62 31 1 272 333 213 273 3.19e-12 68.2
MS.gene00543.t1 MTR_1g018090 50.769 65 31 1 261 325 274 337 3.90e-12 67.8
MS.gene00543.t1 MTR_3g027650 50.000 62 31 0 261 322 322 383 4.33e-12 67.8
MS.gene00543.t1 MTR_1g019240 46.154 65 34 1 263 327 87 150 6.95e-12 65.9
MS.gene00543.t1 MTR_8g036235 39.506 81 41 1 253 325 300 380 7.19e-12 67.0
MS.gene00543.t1 MTR_7g111320 53.125 64 29 1 263 326 434 496 1.65e-11 66.6
MS.gene00543.t1 MTR_3g103030 51.562 64 30 1 262 325 230 292 2.68e-11 64.7
MS.gene00543.t1 MTR_2g098310 33.884 121 37 2 247 324 310 430 9.32e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00543.t1 AT1G10120 42.438 443 162 21 1 427 1 366 1.90e-76 242
MS.gene00543.t1 AT1G10120 42.438 443 162 21 1 427 1 366 1.90e-76 242
MS.gene00543.t1 AT1G68920 63.871 155 30 3 238 392 285 413 5.05e-55 190
MS.gene00543.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.21e-55 190
MS.gene00543.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.21e-55 190
MS.gene00543.t1 AT1G68920 63.871 155 30 3 238 392 286 414 5.21e-55 190
MS.gene00543.t1 AT1G26260 69.231 130 34 2 226 350 133 261 1.01e-51 177
MS.gene00543.t1 AT1G26260 64.583 144 45 2 212 350 148 290 1.95e-51 177
MS.gene00543.t1 AT1G26260 64.583 144 45 2 212 350 170 312 2.83e-51 177
MS.gene00543.t1 AT1G26260 64.583 144 45 2 212 350 170 312 2.83e-51 177
MS.gene00543.t1 AT1G26260 64.583 144 45 2 212 350 170 312 2.83e-51 177
MS.gene00543.t1 AT1G26260 64.583 144 45 2 212 350 170 312 2.83e-51 177
MS.gene00543.t1 AT3G07340 64.964 137 42 3 218 350 213 347 2.31e-48 171
MS.gene00543.t1 AT3G07340 64.964 137 42 3 218 350 213 347 3.50e-48 171
MS.gene00543.t1 AT3G23690 54.598 174 65 5 245 408 176 345 2.58e-46 164
MS.gene00543.t1 AT4G34530 48.256 172 74 2 191 347 87 258 1.38e-43 155
MS.gene00543.t1 AT5G48560 77.419 93 20 1 257 348 297 389 6.74e-43 157
MS.gene00543.t1 AT5G48560 77.419 93 20 1 257 348 297 389 1.10e-42 157
MS.gene00543.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.17e-42 151
MS.gene00543.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.17e-42 151
MS.gene00543.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.63e-42 151
MS.gene00543.t1 AT5G50915 51.163 172 61 5 225 396 106 254 1.63e-42 151
MS.gene00543.t1 AT4G36540 51.316 152 68 3 195 345 79 225 2.02e-40 146
MS.gene00543.t1 AT4G36540 51.316 152 68 3 195 345 79 225 2.08e-40 146
MS.gene00543.t1 AT1G59640 53.623 138 57 2 212 349 94 224 3.87e-40 144
MS.gene00543.t1 AT1G59640 53.285 137 57 2 212 348 94 223 6.59e-40 146
MS.gene00543.t1 AT2G18300 54.610 141 46 2 218 340 124 264 6.85e-40 145
MS.gene00543.t1 AT2G18300 54.610 141 46 2 218 340 124 264 7.16e-40 145
MS.gene00543.t1 AT2G18300 54.610 141 46 2 218 340 124 264 1.20e-39 146
MS.gene00543.t1 AT3G57800 37.066 259 124 5 126 346 32 289 1.43e-39 146
MS.gene00543.t1 AT2G42300 62.500 96 36 0 252 347 176 271 1.40e-37 138
MS.gene00543.t1 AT2G42300 63.158 95 35 0 252 346 176 270 1.25e-36 137
MS.gene00543.t1 AT5G62610 76.316 76 18 0 257 332 149 224 5.11e-35 131
MS.gene00543.t1 AT5G62610 76.316 76 18 0 257 332 149 224 5.11e-35 131
MS.gene00543.t1 AT1G18400 70.732 82 24 0 259 340 143 224 6.79e-33 124
MS.gene00543.t1 AT1G18400 70.732 82 24 0 259 340 143 224 9.19e-33 124
MS.gene00543.t1 AT1G73830 69.136 81 25 0 260 340 146 226 8.48e-32 122
MS.gene00543.t1 AT1G73830 69.136 81 25 0 260 340 146 226 8.59e-32 122
MS.gene00543.t1 AT1G25330 50.806 124 50 1 257 369 100 223 2.14e-31 120
MS.gene00543.t1 AT3G57800 31.373 306 124 6 126 346 32 336 5.46e-31 123
MS.gene00543.t1 AT2G24260 69.697 66 19 1 261 326 35 99 2.96e-22 95.5
MS.gene00543.t1 AT5G58010 62.963 81 25 2 260 336 98 177 3.26e-22 96.7
MS.gene00543.t1 AT4G30980 71.212 66 18 1 261 326 130 194 6.58e-22 95.9
MS.gene00543.t1 AT4G30980 71.212 66 18 1 261 326 178 242 1.09e-21 96.3
MS.gene00543.t1 AT2G24260 69.697 66 19 1 261 326 138 202 1.36e-21 95.9
MS.gene00543.t1 AT2G42300 68.000 50 16 0 252 301 176 225 3.75e-17 80.5
MS.gene00543.t1 AT2G42300 68.000 50 16 0 252 301 176 225 3.75e-17 80.5
MS.gene00543.t1 AT2G42300 69.388 49 15 0 252 300 176 224 4.34e-17 80.5
MS.gene00543.t1 AT4G09180 42.056 107 49 3 241 334 153 259 1.39e-15 77.0
MS.gene00543.t1 AT1G35460 53.731 67 31 0 259 325 179 245 1.71e-15 76.6
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 178 271 1.94e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 178 271 1.94e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 178 271 1.94e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.44e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.44e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.44e-15 78.2
MS.gene00543.t1 AT2G20180 41.053 95 55 1 232 326 249 342 2.44e-15 78.2
MS.gene00543.t1 AT2G42280 54.688 64 29 0 261 324 279 342 3.36e-15 77.0
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT1G09530 53.125 64 29 1 263 326 339 401 5.04e-15 77.4
MS.gene00543.t1 AT2G42280 56.061 66 27 1 261 324 279 344 5.98e-15 76.3
MS.gene00543.t1 AT1G51140 56.250 64 28 0 261 324 304 367 7.31e-15 76.3
MS.gene00543.t1 AT4G28790 35.156 128 64 3 211 333 229 342 1.88e-14 75.1
MS.gene00543.t1 AT2G20180 40.217 92 54 1 232 323 249 339 5.02e-14 73.2
MS.gene00543.t1 AT4G02590 64.179 67 23 1 260 326 82 147 7.40e-14 71.6
MS.gene00543.t1 AT4G02590 64.179 67 23 1 260 326 145 210 9.60e-14 72.0
MS.gene00543.t1 AT4G02590 64.179 67 23 1 260 326 145 210 9.60e-14 72.0
MS.gene00543.t1 AT4G28815 55.172 58 25 1 264 321 71 127 1.07e-13 70.9
MS.gene00543.t1 AT4G28800 35.338 133 68 6 264 389 252 373 1.15e-13 72.8
MS.gene00543.t1 AT1G03040 64.179 67 23 1 260 326 138 203 1.42e-13 71.6
MS.gene00543.t1 AT1G03040 65.152 66 22 1 261 326 144 208 1.64e-13 71.2
MS.gene00543.t1 AT1G03040 64.179 67 23 1 260 326 143 208 2.88e-13 70.9
MS.gene00543.t1 AT4G28815 55.172 58 25 1 264 321 147 203 3.64e-13 70.5
MS.gene00543.t1 AT4G28790 35.897 117 56 3 211 322 229 331 5.16e-13 70.1
MS.gene00543.t1 AT4G28800 52.542 59 27 1 264 322 264 321 3.28e-12 68.6
MS.gene00543.t1 AT4G00050 49.231 65 32 1 261 325 105 168 7.65e-12 66.2
MS.gene00543.t1 AT2G46970 41.250 80 41 2 259 333 216 294 1.16e-11 66.6
MS.gene00543.t1 AT2G46970 41.250 80 41 2 259 333 185 263 1.29e-11 66.2
MS.gene00543.t1 AT2G46970 41.250 80 41 2 259 333 194 272 1.33e-11 66.2
MS.gene00543.t1 AT4G00050 49.231 65 32 1 261 325 207 270 1.50e-11 66.2
MS.gene00543.t1 AT4G00050 49.231 65 32 1 261 325 207 270 1.67e-11 65.9
MS.gene00543.t1 AT4G33880 49.231 65 32 1 261 325 266 329 1.75e-11 65.9
MS.gene00543.t1 AT2G43140 48.485 66 34 0 259 324 229 294 1.95e-11 65.1
MS.gene00543.t1 AT2G43140 48.485 66 34 0 259 324 132 197 3.86e-11 62.8
MS.gene00543.t1 AT4G36930 49.180 61 30 1 267 327 197 256 9.55e-11 63.5

Find 107 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATACAGCACTTGACAATT+TGG 0.175917 1.1:+5405250 MS.gene00543:CDS
TTCCCTGATTGTTCAACTTT+TGG 0.193603 1.1:-5403797 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1.1:+5402962 MS.gene00543:CDS
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1.1:+5402894 MS.gene00543:CDS
TATTAGTTCTGTGTCAAATA+TGG 0.262900 1.1:+5402782 MS.gene00543:CDS
AAGATCTTCACTTACATCTT+TGG 0.264618 1.1:-5404669 None:intergenic
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1.1:+5404249 MS.gene00543:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1.1:+5403080 MS.gene00543:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1.1:-5403323 None:intergenic
GGCATTGGTGGATTTGTTCC+TGG 0.308014 1.1:+5405001 MS.gene00543:CDS
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1.1:+5403191 MS.gene00543:CDS
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1.1:+5404066 MS.gene00543:CDS
TGCAAGTTTCCAGGGTAATA+TGG 0.324788 1.1:+5405051 MS.gene00543:CDS
TGCAAGACTGTGACTGTTTG+TGG 0.339736 1.1:-5403897 None:intergenic
CAAATTGTCAAGTGCTGTAT+TGG 0.339868 1.1:-5405249 None:intergenic
CTTGTTCAATACTCAAATCT+TGG 0.340230 1.1:+5403014 MS.gene00543:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.345728 1.1:+5402839 MS.gene00543:CDS
CACCATTAATTTGACCCCTT+TGG 0.347434 1.1:-5403193 None:intergenic
CGCTTAGGACTCGGCATTGG+TGG 0.369113 1.1:+5404989 MS.gene00543:CDS
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1.1:+5403095 MS.gene00543:CDS
TACCCTGGAAACTTGCATTT+GGG 0.381334 1.1:-5405045 None:intergenic
TTACCCTGGAAACTTGCATT+TGG 0.385009 1.1:-5405046 None:intergenic
ATTCCCAAATGCAAGTTTCC+AGG 0.387230 1.1:+5405042 MS.gene00543:CDS
AAACCAAAAGTTGAACAATC+AGG 0.388796 1.1:+5403794 MS.gene00543:CDS
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1.1:+5402853 MS.gene00543:CDS
CTACATCAAAGTTCAGTTCC+GGG 0.392601 1.1:-5404634 None:intergenic
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1.1:+5402758 MS.gene00543:CDS
TCTACATCAAAGTTCAGTTC+CGG 0.395058 1.1:-5404635 None:intergenic
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1.1:+5402854 MS.gene00543:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1.1:+5403067 MS.gene00543:CDS
AATACAGCACTTGACAATTT+GGG 0.404050 1.1:+5405251 MS.gene00543:CDS
TTATAATGCTGTGATGGAAT+TGG 0.423796 1.1:-5403149 None:intergenic
TATGTACATGCAGAATGCTT+TGG 0.428401 1.1:+5405187 MS.gene00543:intron
AAATTGTCAAGTGCTGTATT+GGG 0.430882 1.1:-5405248 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1.1:+5403098 MS.gene00543:CDS
TGCCGAGTCCTAAGCGTGAC+TGG 0.437410 1.1:-5404982 None:intergenic
CTCCAGTCACGCTTAGGACT+CGG 0.439169 1.1:+5404980 MS.gene00543:CDS
CAGTCACAGTCTTGCAGAAA+GGG 0.448205 1.1:+5403904 MS.gene00543:CDS
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1.1:-5404084 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1.1:+5403089 MS.gene00543:CDS
GAACCATCAGAAATCTTCCT+TGG 0.455036 1.1:-5403755 None:intergenic
GAACATGTAGCTAACACATC+AGG 0.456379 1.1:+5403122 MS.gene00543:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1.1:+5403257 MS.gene00543:CDS
ATTCATGAGGATGGAGGTAC+AGG 0.461324 1.1:+5403239 MS.gene00543:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1.1:-5402765 None:intergenic
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1.1:+5403044 MS.gene00543:CDS
TATTCAACACACTATAACTC+TGG 0.473092 1.1:-5405659 None:intergenic
AAAGTTCAGTTCCGGGTTCA+CGG 0.473106 1.1:-5404627 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1.1:+5404974 MS.gene00543:intron
ACAGTTCCCTCCTTTGCCTC+AGG 0.473617 1.1:+5405096 MS.gene00543:CDS
TGTGCAATCACTGCAACAAC+AGG 0.487175 1.1:+5404305 MS.gene00543:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1.1:+5403167 MS.gene00543:CDS
GAAACTTGCCACCGTGAACC+CGG 0.509079 1.1:+5404616 MS.gene00543:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1.1:+5403178 MS.gene00543:CDS
GTTCAATACTCAAATCTTGG+AGG 0.510892 1.1:+5403017 MS.gene00543:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1.1:+5403050 MS.gene00543:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1.1:-5403060 None:intergenic
GGGAACTGTGTCGATGAACT+AGG 0.526485 1.1:-5405082 None:intergenic
AAAAGATTAGTGAACGAATG+AGG 0.527173 1.1:+5404043 MS.gene00543:CDS
ACAGTCACAGTCTTGCAGAA+AGG 0.528577 1.1:+5403903 MS.gene00543:CDS
TGGAAACTTGCATTTGGGAA+TGG 0.530239 1.1:-5405040 None:intergenic
TTTCTTATACTTCCACTACC+AGG 0.533484 1.1:-5403269 None:intergenic
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1.1:+5403071 MS.gene00543:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1.1:+5403090 MS.gene00543:CDS
TTCCCAAATGCAAGTTTCCA+GGG 0.541363 1.1:+5405043 MS.gene00543:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542730 1.1:+5403719 MS.gene00543:intron
AGTTTCCAGGGTAATATGGC+TGG 0.546057 1.1:+5405055 MS.gene00543:CDS
TTCTACTTTCAGTCCAAACA+AGG 0.550639 1.1:+5403310 MS.gene00543:CDS
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1.1:+5403099 MS.gene00543:CDS
AACCAAAAGTTGAACAATCA+GGG 0.556875 1.1:+5403795 MS.gene00543:CDS
TCTCCAAGGAAGATTTCTGA+TGG 0.568713 1.1:+5403752 MS.gene00543:CDS
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1.1:-5403096 None:intergenic
GGATGAGAAGAGCTTATACC+AGG 0.576202 1.1:-5405019 None:intergenic
TGGTGAACAATCTCAGATTG+AGG 0.578059 1.1:+5403211 MS.gene00543:CDS
AACTGAACTTTGATGTAGAA+CGG 0.586015 1.1:+5404639 MS.gene00543:CDS
TCACGCTTAGGACTCGGCAT+TGG 0.589627 1.1:+5404986 MS.gene00543:CDS
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1.1:+5403177 MS.gene00543:CDS
ATGTGATTATAATGCTGTGA+TGG 0.590061 1.1:-5403155 None:intergenic
GAGGACTCTATTCATGAGGA+TGG 0.590188 1.1:+5403230 MS.gene00543:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1.1:-5402972 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1.1:-5403056 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1.1:-5402882 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1.1:-5403046 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1.1:+5402704 MS.gene00543:CDS
TCTTTAGAAGCATCTCCACT+CGG 0.607421 1.1:-5403839 None:intergenic
CTTGACAATTTGGGACCCAA+TGG 0.608459 1.1:+5405260 MS.gene00543:CDS
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1.1:+5403100 MS.gene00543:CDS
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1.1:-5402971 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612365 1.1:+5403160 MS.gene00543:CDS
ATCACTGCAACAACAGGTTG+AGG 0.619338 1.1:+5404311 MS.gene00543:CDS
GTTCCCCACCTGACCCATGT+TGG 0.625912 1.1:-5403103 None:intergenic
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1.1:+5402692 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1.1:+5403123 MS.gene00543:CDS
GAACTTGGATTAGAATGCTG+AGG 0.632192 1.1:+5403712 MS.gene00543:intron
GGAGGTACAGGATCTGCACC+TGG 0.632655 1.1:+5403251 MS.gene00543:CDS
AACTTGGATTAGAATGCTGA+GGG 0.637008 1.1:+5403713 MS.gene00543:intron
ATGGAGTGAAAGATTCTCCA+AGG 0.638409 1.1:+5403738 MS.gene00543:CDS
GATTGAGGACTCTATTCATG+AGG 0.640742 1.1:+5403226 MS.gene00543:CDS
GCATGCCAGCCATATTACCC+TGG 0.643474 1.1:-5405060 None:intergenic
AATGCAATGGAGTTTCAACA+TGG 0.644756 1.1:+5402717 MS.gene00543:CDS
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1.1:+5403869 MS.gene00543:CDS
GACTCTATTCATGAGGATGG+AGG 0.659616 1.1:+5403233 MS.gene00543:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1.1:+5402687 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1.1:+5404077 MS.gene00543:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1.1:+5403179 MS.gene00543:CDS
GCTAAAGATAACTCTCCGAG+TGG 0.729396 1.1:+5403824 MS.gene00543:CDS
GTTCAGTTCCGGGTTCACGG+TGG 0.752023 1.1:-5404624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATATCAAATTTCAAAA+AGG + chr1.1:5405367-5405386 MS.gene00543:intron 15.0%
!! AACCAAAAGTTATTAAAACT+TGG - chr1.1:5404001-5404020 None:intergenic 20.0%
!! AATTTATTTCCATATTGAAC+AGG + chr1.1:5405626-5405645 MS.gene00543:intron 20.0%
!! ACTAACAAAAAATACATTCA+TGG + chr1.1:5405455-5405474 MS.gene00543:intron 20.0%
!! ATTTATTTCCATATTGAACA+GGG + chr1.1:5405627-5405646 MS.gene00543:intron 20.0%
!! TATATCAATGAATCTCATAT+AGG + chr1.1:5403613-5403632 MS.gene00543:intron 20.0%
!! TGAAATATCTTATATATGCT+TGG + chr1.1:5403550-5403569 MS.gene00543:intron 20.0%
!!! AATCATAATTGTGTTTTAAC+TGG - chr1.1:5404931-5404950 None:intergenic 20.0%
!!! TACCAAGTTTTAATAACTTT+TGG + chr1.1:5403996-5404015 MS.gene00543:intron 20.0%
!!! TTAGTTGTTAATTTGTTAGA+GGG + chr1.1:5403406-5403425 MS.gene00543:intron 20.0%
!!! TTTCAAAACTTTTATGGAAT+GGG + chr1.1:5405218-5405237 MS.gene00543:CDS 20.0%
! AATGAATCTCATATAGGAAT+AGG + chr1.1:5403619-5403638 MS.gene00543:intron 25.0%
! GTCGTAACTTATAACTTATT+TGG + chr1.1:5404146-5404165 MS.gene00543:intron 25.0%
! GTTAAGATGATTGTGTTAAA+TGG + chr1.1:5404110-5404129 MS.gene00543:intron 25.0%
! GTTTAATTGTATTGTCTATG+AGG + chr1.1:5403651-5403670 MS.gene00543:intron 25.0%
! TAATCCAAGTTCATAATACA+AGG - chr1.1:5403704-5403723 None:intergenic 25.0%
! TTACAGTATAAAGATGTTGA+TGG - chr1.1:5403943-5403962 None:intergenic 25.0%
! TTCTTCTCTTATTAGATAAC+TGG + chr1.1:5404249-5404268 MS.gene00543:intron 25.0%
!! ATTTTTATCCTTGAATGTGT+CGG - chr1.1:5405556-5405575 None:intergenic 25.0%
!! CATGACTTTCAAAACTTTTA+TGG + chr1.1:5405212-5405231 MS.gene00543:CDS 25.0%
!! CTTTCAAAACTTTTATGGAA+TGG + chr1.1:5405217-5405236 MS.gene00543:CDS 25.0%
!! GCTTCAATTCCATTATATTT+TGG + chr1.1:5404543-5404562 MS.gene00543:intron 25.0%
!! TTGATACTTTAAAGATTGCA+AGG - chr1.1:5404350-5404369 None:intergenic 25.0%
!!! CATAAAAGTTTTGAAAGTCA+TGG - chr1.1:5405214-5405233 None:intergenic 25.0%
!!! GTTAGTTGTTAATTTGTTAG+AGG + chr1.1:5403405-5403424 MS.gene00543:intron 25.0%
!!! TATTAGTTCTGTGTCAAATA+TGG + chr1.1:5402782-5402801 MS.gene00543:CDS 25.0%
!!! TTCCTTTTTTTTATTTCCCT+TGG - chr1.1:5404433-5404452 None:intergenic 25.0%
AAAAGATTAGTGAACGAATG+AGG + chr1.1:5404043-5404062 MS.gene00543:CDS 30.0%
AAACCAAAAGTTGAACAATC+AGG + chr1.1:5403794-5403813 MS.gene00543:CDS 30.0%
AACCAAAAGTTGAACAATCA+GGG + chr1.1:5403795-5403814 MS.gene00543:CDS 30.0%
AACTGAACTTTGATGTAGAA+CGG + chr1.1:5404639-5404658 MS.gene00543:CDS 30.0%
AAGATCTTCACTTACATCTT+TGG - chr1.1:5404672-5404691 None:intergenic 30.0%
AAGTGAAGATCTTAATCGTA+CGG + chr1.1:5404679-5404698 MS.gene00543:intron 30.0%
AATACAGCACTTGACAATTT+GGG + chr1.1:5405251-5405270 MS.gene00543:CDS 30.0%
AATGCCTTGTATTATGAACT+TGG + chr1.1:5403697-5403716 MS.gene00543:intron 30.0%
ACAGCATTATAATCACATCA+AGG + chr1.1:5403160-5403179 MS.gene00543:CDS 30.0%
ACTAGCAAAAGATACACTTA+AGG - chr1.1:5405394-5405413 None:intergenic 30.0%
AGACATTGTTACTACAGTAT+CGG + chr1.1:5405345-5405364 MS.gene00543:intron 30.0%
ATGTGATTATAATGCTGTGA+TGG - chr1.1:5403158-5403177 None:intergenic 30.0%
CACCAAGGGAAATAAAAAAA+AGG + chr1.1:5404428-5404447 MS.gene00543:intron 30.0%
CCAGGAAAACCAAAATATAA+TGG - chr1.1:5404555-5404574 None:intergenic 30.0%
CTTGGTACACATTAAGAAAA+TGG - chr1.1:5403983-5404002 None:intergenic 30.0%
CTTGTTCAATACTCAAATCT+TGG + chr1.1:5403014-5403033 MS.gene00543:CDS 30.0%
GATATCAATGAATCTTATGC+AGG + chr1.1:5403361-5403380 MS.gene00543:intron 30.0%
TCTTTATAAGATGAATAGCC+AGG - chr1.1:5404573-5404592 None:intergenic 30.0%
! AAATTGTCAAGTGCTGTATT+GGG - chr1.1:5405251-5405270 None:intergenic 30.0%
! AGTGGAAGTATAAGAAAAAG+AGG + chr1.1:5403275-5403294 MS.gene00543:CDS 30.0%
! ATCTTTTGCTAGTCATTAAG+TGG + chr1.1:5405401-5405420 MS.gene00543:intron 30.0%
! CTAATATCCATTTCTGAAGA+TGG - chr1.1:5402768-5402787 None:intergenic 30.0%
! TTATAATGCTGTGATGGAAT+TGG - chr1.1:5403152-5403171 None:intergenic 30.0%
!! ATCTTATAACCCTCTTGTTT+TGG + chr1.1:5402962-5402981 MS.gene00543:CDS 30.0%
!!! ACTTTTGGTTTTGCTTTTGT+AGG + chr1.1:5404011-5404030 MS.gene00543:intron 30.0%
!!! CCATTATATTTTGGTTTTCC+TGG + chr1.1:5404552-5404571 MS.gene00543:intron 30.0%
!!! GTTGGTTTGTTTTGTTTATG+AGG + chr1.1:5403508-5403527 MS.gene00543:intron 30.0%
AACATGTAGCTAACACATCA+GGG + chr1.1:5403123-5403142 MS.gene00543:CDS 35.0%
AAGTGAACTATTCACTTTGG+AGG + chr1.1:5404716-5404735 MS.gene00543:intron 35.0%
AAGTGAATAGTTCACTTCCA+CGG - chr1.1:5404713-5404732 None:intergenic 35.0%
AAGTGGAAGTTTCTCAGAAA+TGG + chr1.1:5403067-5403086 MS.gene00543:CDS 35.0%
AATGCAATGGAGTTTCAACA+TGG + chr1.1:5402717-5402736 MS.gene00543:CDS 35.0%
ACTAATGAGAGACACATTTG+AGG + chr1.1:5405487-5405506 MS.gene00543:intron 35.0%
AGATTCTGCCTATTTACCAT+TGG - chr1.1:5405279-5405298 None:intergenic 35.0%
AGTCATTAAGTGGCTAATAG+AGG + chr1.1:5405411-5405430 MS.gene00543:intron 35.0%
AGTGAACTATTCACTTTGGA+GGG + chr1.1:5404717-5404736 MS.gene00543:intron 35.0%
ATCCAAAGGGGTCAAATTAA+TGG + chr1.1:5403191-5403210 MS.gene00543:CDS 35.0%
ATGAGGCCATGATTGATATT+CGG - chr1.1:5404826-5404845 None:intergenic 35.0%
ATGTGTCCGAATATCAATCA+TGG + chr1.1:5404817-5404836 MS.gene00543:intron 35.0%
CAAATGTGTCTCTCATTAGT+CGG - chr1.1:5405487-5405506 None:intergenic 35.0%
CAATACAGCACTTGACAATT+TGG + chr1.1:5405250-5405269 MS.gene00543:CDS 35.0%
CCTGATTCATAGAACTTCAT+CGG + chr1.1:5403464-5403483 MS.gene00543:intron 35.0%
CTCGATAGGATTTGTATTGT+TGG + chr1.1:5403490-5403509 MS.gene00543:intron 35.0%
CTTGATTCTCCAAAACAAGA+GGG - chr1.1:5402974-5402993 None:intergenic 35.0%
GATTCTGCCTATTTACCATT+GGG - chr1.1:5405278-5405297 None:intergenic 35.0%
GCTTAGAAACAAACCTTGTT+TGG - chr1.1:5403326-5403345 None:intergenic 35.0%
GTTCAATACTCAAATCTTGG+AGG + chr1.1:5403017-5403036 MS.gene00543:CDS 35.0%
TAACCATATCGTTACATCGA+TGG - chr1.1:5404780-5404799 None:intergenic 35.0%
TATAATCACATCAAGGATGC+TGG + chr1.1:5403167-5403186 MS.gene00543:CDS 35.0%
TATGTACATGCAGAATGCTT+TGG + chr1.1:5405187-5405206 MS.gene00543:intron 35.0%
TATTTCCATATTGAACAGGG+AGG + chr1.1:5405630-5405649 MS.gene00543:intron 35.0%
TCTACATCAAAGTTCAGTTC+CGG - chr1.1:5404638-5404657 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG + chr1.1:5404713-5404732 MS.gene00543:intron 35.0%
TTCTACTTTCAGTCCAAACA+AGG + chr1.1:5403310-5403329 MS.gene00543:CDS 35.0%
TTCTTGTCCATCTTCAGAAA+TGG + chr1.1:5402758-5402777 MS.gene00543:CDS 35.0%
TTTCTTATACTTCCACTACC+AGG - chr1.1:5403272-5403291 None:intergenic 35.0%
! AACTTGGATTAGAATGCTGA+GGG + chr1.1:5403713-5403732 MS.gene00543:intron 35.0%
! ATCTTTACTCTTTTCACCTG+AGG - chr1.1:5405115-5405134 None:intergenic 35.0%
! CAAATTGTCAAGTGCTGTAT+TGG - chr1.1:5405252-5405271 None:intergenic 35.0%
! TTCCCTGATTGTTCAACTTT+TGG - chr1.1:5403800-5403819 None:intergenic 35.0%
! TTGAGTCAAGCTCATACTTT+TGG + chr1.1:5402894-5402913 MS.gene00543:CDS 35.0%
!! TACTTTTGGAGGTTCTTCAA+TGG + chr1.1:5402908-5402927 MS.gene00543:CDS 35.0%
!!! CTCTTGTTTTGGAGAATCAA+GGG + chr1.1:5402973-5402992 MS.gene00543:CDS 35.0%
AAACTTCCACTTCCATAGGA+AGG - chr1.1:5403059-5403078 None:intergenic 40.0%
AAGATTCCTTCCTATGGAAG+TGG + chr1.1:5403050-5403069 MS.gene00543:CDS 40.0%
ATCCACAAGATTCCTTCCTA+TGG + chr1.1:5403044-5403063 MS.gene00543:CDS 40.0%
ATGGAGTGAAAGATTCTCCA+AGG + chr1.1:5403738-5403757 MS.gene00543:CDS 40.0%
ATTCATGTGAGAGCTAGAAG+AGG + chr1.1:5403869-5403888 MS.gene00543:CDS 40.0%
ATTCCCAAATGCAAGTTTCC+AGG + chr1.1:5405042-5405061 MS.gene00543:CDS 40.0%
ATTTCATGGCTTCTTCAGCT+TGG + chr1.1:5402853-5402872 MS.gene00543:CDS 40.0%
CCGATGAAGTTCTATGAATC+AGG - chr1.1:5403467-5403486 None:intergenic 40.0%
CCTTGATTCTCCAAAACAAG+AGG - chr1.1:5402975-5402994 None:intergenic 40.0%
CTACATCAAAGTTCAGTTCC+GGG - chr1.1:5404637-5404656 None:intergenic 40.0%
GAACATGTAGCTAACACATC+AGG + chr1.1:5403122-5403141 MS.gene00543:CDS 40.0%
GAACCATCAGAAATCTTCCT+TGG - chr1.1:5403758-5403777 None:intergenic 40.0%
GAATATCAATCATGGCCTCA+TGG + chr1.1:5404825-5404844 MS.gene00543:intron 40.0%
GATTGAGGACTCTATTCATG+AGG + chr1.1:5403226-5403245 MS.gene00543:CDS 40.0%
GCTTGACTCAATGAAACAAG+TGG - chr1.1:5402885-5402904 None:intergenic 40.0%
GGAAGTTTCTCAGAAATGGT+TGG + chr1.1:5403071-5403090 MS.gene00543:CDS 40.0%
TACCCTGGAAACTTGCATTT+GGG - chr1.1:5405048-5405067 None:intergenic 40.0%
TAGCCATCGATGTAACGATA+TGG + chr1.1:5404774-5404793 MS.gene00543:intron 40.0%
TCTCCAAGGAAGATTTCTGA+TGG + chr1.1:5403752-5403771 MS.gene00543:CDS 40.0%
TGAGAAACTTCCACTTCCAT+AGG - chr1.1:5403063-5403082 None:intergenic 40.0%
TGCAAGTTTCCAGGGTAATA+TGG + chr1.1:5405051-5405070 MS.gene00543:CDS 40.0%
TGGAAACTTGCATTTGGGAA+TGG - chr1.1:5405043-5405062 None:intergenic 40.0%
TGGTGAACAATCTCAGATTG+AGG + chr1.1:5403211-5403230 MS.gene00543:CDS 40.0%
TTACCCTGGAAACTTGCATT+TGG - chr1.1:5405049-5405068 None:intergenic 40.0%
TTCAACCTCCCTGTTCAATA+TGG - chr1.1:5405638-5405657 None:intergenic 40.0%
TTCCATAGGAAGGAATCTTG+TGG - chr1.1:5403049-5403068 None:intergenic 40.0%
TTCCCAAATGCAAGTTTCCA+GGG + chr1.1:5405043-5405062 MS.gene00543:CDS 40.0%
TTTATCCTTGAATGTGTCGG+TGG - chr1.1:5405553-5405572 None:intergenic 40.0%
TTTCATGGCTTCTTCAGCTT+GGG + chr1.1:5402854-5402873 MS.gene00543:CDS 40.0%
! AGTCAAGCTCATACTTTTGG+AGG + chr1.1:5402897-5402916 MS.gene00543:CDS 40.0%
! CACCATTAATTTGACCCCTT+TGG - chr1.1:5403196-5403215 None:intergenic 40.0%
! GAACTTGGATTAGAATGCTG+AGG + chr1.1:5403712-5403731 MS.gene00543:intron 40.0%
! TCAGAAATGGTTGGTTCCTT+TGG + chr1.1:5403080-5403099 MS.gene00543:CDS 40.0%
! TTGCTTCAAGAACTTGTTCC+AGG + chr1.1:5404066-5404085 MS.gene00543:CDS 40.0%
! TTTGGGACCCAATGGTAAAT+AGG + chr1.1:5405268-5405287 MS.gene00543:intron 40.0%
!! AGTTGATGAGAAGATCCATG+AGG - chr1.1:5404843-5404862 None:intergenic 40.0%
!! TCTTTAGAAGCATCTCCACT+CGG - chr1.1:5403842-5403861 None:intergenic 40.0%
!!! CCTCTTGTTTTGGAGAATCA+AGG + chr1.1:5402972-5402991 MS.gene00543:CDS 40.0%
AAAGTTCAGTTCCGGGTTCA+CGG - chr1.1:5404630-5404649 None:intergenic 45.0%
AAGGATGCTGGAATCCAAAG+GGG + chr1.1:5403179-5403198 MS.gene00543:CDS 45.0%
ACAGTCACAGTCTTGCAGAA+AGG + chr1.1:5403903-5403922 MS.gene00543:CDS 45.0%
ACTTGTTCCAGGATGCAACA+AGG + chr1.1:5404077-5404096 MS.gene00543:CDS 45.0%
AGTTTCCAGGGTAATATGGC+TGG + chr1.1:5405055-5405074 MS.gene00543:CDS 45.0%
ATCACTGCAACAACAGGTTG+AGG + chr1.1:5404311-5404330 MS.gene00543:CDS 45.0%
CAAGGATGCTGGAATCCAAA+GGG + chr1.1:5403178-5403197 MS.gene00543:CDS 45.0%
CAGTCACAGTCTTGCAGAAA+GGG + chr1.1:5403904-5403923 MS.gene00543:CDS 45.0%
GACTCTATTCATGAGGATGG+AGG + chr1.1:5403233-5403252 MS.gene00543:CDS 45.0%
GAGGACTCTATTCATGAGGA+TGG + chr1.1:5403230-5403249 MS.gene00543:CDS 45.0%
GATGCAACAAGGTAGCGATT+TGG + chr1.1:5404088-5404107 MS.gene00543:intron 45.0%
GATTAGAATGCTGAGGGTGA+TGG + chr1.1:5403719-5403738 MS.gene00543:intron 45.0%
GCTAAAGATAACTCTCCGAG+TGG + chr1.1:5403824-5403843 MS.gene00543:CDS 45.0%
GGATGAGAAGAGCTTATACC+AGG - chr1.1:5405022-5405041 None:intergenic 45.0%
GTGCACATGCTTAACACCAA+GGG + chr1.1:5404414-5404433 MS.gene00543:intron 45.0%
TAGATTCTCCAGTCACGCTT+AGG + chr1.1:5404974-5404993 MS.gene00543:intron 45.0%
TCAAGGATGCTGGAATCCAA+AGG + chr1.1:5403177-5403196 MS.gene00543:CDS 45.0%
TGCAAGACTGTGACTGTTTG+TGG - chr1.1:5403900-5403919 None:intergenic 45.0%
TGTGCAATCACTGCAACAAC+AGG + chr1.1:5404305-5404324 MS.gene00543:CDS 45.0%
TGTGCACATGCTTAACACCA+AGG + chr1.1:5404413-5404432 MS.gene00543:intron 45.0%
TTGGTTCCTTTGGCCAACAT+GGG + chr1.1:5403090-5403109 MS.gene00543:CDS 45.0%
! AACTTCATCGGTGTCTCGAT+AGG + chr1.1:5403476-5403495 MS.gene00543:intron 45.0%
! ACTCTTTTCACCTGAGGCAA+AGG - chr1.1:5405109-5405128 None:intergenic 45.0%
! ATTCATGAGGATGGAGGTAC+AGG + chr1.1:5403239-5403258 MS.gene00543:CDS 45.0%
! CTTGACAATTTGGGACCCAA+TGG + chr1.1:5405260-5405279 MS.gene00543:CDS 45.0%
! TTTTCACCTGAGGCAAAGGA+GGG - chr1.1:5405105-5405124 None:intergenic 45.0%
!!! ACTTTTATAAAATAATATAA+AGG + chr1.1:5404455-5404474 MS.gene00543:intron 5.0%
ATCGCTACCTTGTTGCATCC+TGG - chr1.1:5404087-5404106 None:intergenic 50.0%
ATCGTACGGATTTGACTCCG+TGG + chr1.1:5404693-5404712 MS.gene00543:intron 50.0%
CGATACCACCGACACATTCA+AGG + chr1.1:5405545-5405564 MS.gene00543:intron 50.0%
GCAGCAGCAGCATCATTTCA+TGG + chr1.1:5402839-5402858 MS.gene00543:CDS 50.0%
GGGTGGTGAGGAAAATGCAA+TGG + chr1.1:5402704-5402723 MS.gene00543:CDS 50.0%
! CTTTTCACCTGAGGCAAAGG+AGG - chr1.1:5405106-5405125 None:intergenic 50.0%
! GGGAACTGTGTCGATGAACT+AGG - chr1.1:5405085-5405104 None:intergenic 50.0%
! GTTGGTTCCTTTGGCCAACA+TGG + chr1.1:5403089-5403108 MS.gene00543:CDS 50.0%
!! GGCATTGGTGGATTTGTTCC+TGG + chr1.1:5405001-5405020 MS.gene00543:CDS 50.0%
ACAGGATCTGCACCTGGTAG+TGG + chr1.1:5403257-5403276 MS.gene00543:CDS 55.0%
ACAGTTCCCTCCTTTGCCTC+AGG + chr1.1:5405096-5405115 MS.gene00543:CDS 55.0%
ACCTGACCCATGTTGGCCAA+AGG - chr1.1:5403099-5403118 None:intergenic 55.0%
CTCCAGTCACGCTTAGGACT+CGG + chr1.1:5404980-5404999 MS.gene00543:CDS 55.0%
GAAACTTGCCACCGTGAACC+CGG + chr1.1:5404616-5404635 MS.gene00543:CDS 55.0%
GCATGCCAGCCATATTACCC+TGG - chr1.1:5405063-5405082 None:intergenic 55.0%
TCACGCTTAGGACTCGGCAT+TGG + chr1.1:5404986-5405005 MS.gene00543:CDS 55.0%
TCCTTTGGCCAACATGGGTC+AGG + chr1.1:5403095-5403114 MS.gene00543:CDS 55.0%
TTGGCCAACATGGGTCAGGT+GGG + chr1.1:5403099-5403118 MS.gene00543:CDS 55.0%
TTTGGCCAACATGGGTCAGG+TGG + chr1.1:5403098-5403117 MS.gene00543:CDS 55.0%
GTTCAGTTCCGGGTTCACGG+TGG - chr1.1:5404627-5404646 None:intergenic 60.0%
GTTCCCCACCTGACCCATGT+TGG - chr1.1:5403106-5403125 None:intergenic 60.0%
TGCCGAGTCCTAAGCGTGAC+TGG - chr1.1:5404985-5405004 None:intergenic 60.0%
TGGCCAACATGGGTCAGGTG+GGG + chr1.1:5403100-5403119 MS.gene00543:CDS 60.0%
! CGCTTAGGACTCGGCATTGG+TGG + chr1.1:5404989-5405008 MS.gene00543:CDS 60.0%
! GGAGGTACAGGATCTGCACC+TGG + chr1.1:5403251-5403270 MS.gene00543:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 5402702 5405670 5402702 ID=MS.gene00543
chr1.1 mRNA 5402702 5405670 5402702 ID=MS.gene00543.t1;Parent=MS.gene00543
chr1.1 exon 5402702 5403331 5402702 ID=MS.gene00543.t1.exon1;Parent=MS.gene00543.t1
chr1.1 CDS 5402702 5403331 5402702 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5403725 5403925 5403725 ID=MS.gene00543.t1.exon2;Parent=MS.gene00543.t1
chr1.1 CDS 5403725 5403925 5403725 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5404033 5404098 5404033 ID=MS.gene00543.t1.exon3;Parent=MS.gene00543.t1
chr1.1 CDS 5404033 5404098 5404033 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5404264 5404332 5404264 ID=MS.gene00543.t1.exon4;Parent=MS.gene00543.t1
chr1.1 CDS 5404264 5404332 5404264 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5404605 5404676 5404605 ID=MS.gene00543.t1.exon5;Parent=MS.gene00543.t1
chr1.1 CDS 5404605 5404676 5404605 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5404977 5405117 5404977 ID=MS.gene00543.t1.exon6;Parent=MS.gene00543.t1
chr1.1 CDS 5404977 5405117 5404977 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5405200 5405281 5405200 ID=MS.gene00543.t1.exon7;Parent=MS.gene00543.t1
chr1.1 CDS 5405200 5405281 5405200 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
chr1.1 exon 5405648 5405670 5405648 ID=MS.gene00543.t1.exon8;Parent=MS.gene00543.t1
chr1.1 CDS 5405648 5405670 5405648 ID=cds.MS.gene00543.t1;Parent=MS.gene00543.t1
Gene Sequence

>MS.gene00543

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGTTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAATCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCATCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCATGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTATAAGAAAAAGAGGACTTGATCAAAATTCTACTTTCAGTCCAAACAAGGTTTGTTTCTAAGCTAAATTTGATATTCAGATATCAATGAATCTTATGCAGGAATTTTTCTTAATAGATGAATGTTAGTTGTTAATTTGTTAGAGGGAGAGAGAAATGTTAGTAGTAGAGATTGAACTTAGACCTGATTCATAGAACTTCATCGGTGTCTCGATAGGATTTGTATTGTTGGTTTGTTTTGTTTATGAGGTTTATGAGATACTAATGAATGAAATATCTTATATATGCTTGGATTAGATCAAACTTTGTTGCTAAGCTAAGTTTGATATTCTTATATCAATGAATCTCATATAGGAATAGGACTTGTAATGTTTAATTGTATTGTCTATGAGGTTTTATGAGATACTAATGCGAGAAATGCCTTGTATTATGAACTTGGATTAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCAAGGAAGATTTCTGATGGTTCAAAAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGGAAGCAAGCTAAAGATAACTCTCCGAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGTCACAGTCTTGCAGAAAGGGTACAAACTACAAACCATCAACATCTTTATACTGTAATGTTTGTTATGATAAATCCATTTTCTTAATGTGTACCAAGTTTTAATAACTTTTGGTTTTGCTTTTGTAGGTTAGAAGAGAAAAGATTAGTGAACGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGGTAGCGATTTGGTTAAGATGATTGTGTTAAATGGTTTCTTATGATTCGTCGTAACTTATAACTTATTTGGTGTCACATTGATTGATATATGTCTCAGCAGATTAATTTCATTTTCTCTTTGTTAATTTTTCTGATGATTATGTCTTTGATTTCTTCTCTTATTAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAACAACAGGTTGAGGTAAGACAGCAGTGCCTTGCAATCTTTAAAGTATCAATTTATTAGTATTATTCAAAGTTCAAACTTGATCTGTTTTGCACTGTGCACATGCTTAACACCAAGGGAAATAAAAAAAAGGAAATACTTTTATAAAATAATATAAAGGATTTAATCATTTCACTGAATAATGAATATTAAGAGATTGTTTTATGATAATTACATGACTTGAAAGCTTCAATTCCATTATATTTTGGTTTTCCTGGCTATTCATCTTATAAAGATATATTTTGCAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAACGGCTCTTATCCAAAGATGTAAGTGAAGATCTTAATCGTACGGATTTGACTCCGTGGAAGTGAACTATTCACTTTGGAGGGTAAAGTAAATAATCTCAATTGTTGATGAGAAATTTAGCCATCGATGTAACGATATGGTTATGCATAGCAAATCTTAAATGTGTCCGAATATCAATCATGGCCTCATGGATCTTCTCATCAACTGTTGACATTACTTTATCTTCTAAGTAAATTGTACACTTTAGAAGAGTTACTCTTGCTATCTTAGTCCAGTTAAAACACAATTATGATTATGACGTGTATTTCTCTATCAATTAGATTCTCCAGTCACGCTTAGGACTCGGCATTGGTGGATTTGTTCCTGGTATAAGCTCTTCTCATCCATTCCCAAATGCAAGTTTCCAGGGTAATATGGCTGGCATGCCTAGTTCATCGACACAGTTCCCTCCTTTGCCTCAGGTGAAAAGAGTAAAGATCTTTTCAACATTGTAGTATTAACTCACTTGTTTGTGAAGCACTGACATACATTATGTACATGCAGAATGCTTTGGACCATGACTTTCAAAACTTTTATGGAATGGGATATGATCCCAATACAGCACTTGACAATTTGGGACCCAATGGTAAATAGGCAGAATCTTTTTTTTTTTTTTTGAAAAACAGTCGAGAAATTTTCGAGATGTGCGAGACATTGTTACTACAGTATCGGAATATATCAAATTTCAAAAAGGTCCTTAAGTGTATCTTTTGCTAGTCATTAAGTGGCTAATAGAGGACACGTTCAAAGATCAAACTAACTAACAAAAAATACATTCATGGATCAAACCGACTAATGAGAGACACATTTGAGGTTGTTTTTATAATTTTTGTTAATTCAAGACTATAGCGATACCACCGACACATTCAAGGATAAAAATGACGATTTACTCTTCTTTCATTGTTTGCACGATATCAATTTTGTCTAATTAATTTATTTCCATATTGAACAGGGAGGTTGAAACCAGAGTTATAG
Protein sequence

>MS.gene00543.t1

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMVKTSSDVVNHHQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSIRKRGLDQNSTFSPNKNAEGDGVKDSPRKISDGSKEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTALDNLGPNGRLKPEL