Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005433.t1 | RHN76102.1 | 90.4 | 83 | 8 | 0 | 13 | 95 | 267 | 349 | 3.90E-32 | 148.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005433.t1 | Q9XE58 | 51.1 | 92 | 37 | 2 | 11 | 94 | 354 | 445 | 1.2e-16 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005433.t1 | G7IRV1 | 90.4 | 83 | 8 | 0 | 13 | 95 | 339 | 421 | 2.8e-32 | 148.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005433.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005433.t1 | MTR_2g097410 | 90.361 | 83 | 8 | 0 | 13 | 95 | 339 | 421 | 8.86e-43 | 155 |
| MS.gene005433.t1 | MTR_3g087300 | 92.308 | 52 | 4 | 0 | 13 | 64 | 157 | 208 | 1.64e-25 | 100 |
| MS.gene005433.t1 | MTR_4g064150 | 62.500 | 72 | 27 | 0 | 24 | 95 | 340 | 411 | 2.22e-25 | 105 |
| MS.gene005433.t1 | MTR_2g089030 | 65.000 | 80 | 26 | 2 | 179 | 258 | 227 | 304 | 1.30e-24 | 102 |
| MS.gene005433.t1 | MTR_4g064160 | 59.259 | 81 | 33 | 0 | 14 | 94 | 285 | 365 | 1.17e-23 | 100 |
| MS.gene005433.t1 | MTR_4g064120 | 61.429 | 70 | 27 | 0 | 26 | 95 | 235 | 304 | 2.31e-22 | 96.7 |
| MS.gene005433.t1 | MTR_3g110530 | 93.478 | 46 | 3 | 0 | 134 | 179 | 208 | 253 | 2.45e-22 | 95.5 |
| MS.gene005433.t1 | MTR_7g062120 | 51.064 | 94 | 42 | 1 | 27 | 116 | 354 | 447 | 4.65e-22 | 95.9 |
| MS.gene005433.t1 | MTR_4g064180 | 55.844 | 77 | 34 | 0 | 19 | 95 | 228 | 304 | 1.09e-21 | 94.7 |
| MS.gene005433.t1 | MTR_2g097390 | 56.923 | 65 | 28 | 0 | 30 | 94 | 260 | 324 | 1.92e-18 | 85.1 |
| MS.gene005433.t1 | MTR_4g045667 | 56.164 | 73 | 29 | 1 | 163 | 232 | 135 | 207 | 2.90e-18 | 84.3 |
| MS.gene005433.t1 | MTR_2g097350 | 56.250 | 64 | 28 | 0 | 31 | 94 | 260 | 323 | 1.03e-17 | 82.8 |
| MS.gene005433.t1 | MTR_2g097310 | 58.730 | 63 | 23 | 1 | 35 | 94 | 259 | 321 | 1.05e-16 | 80.1 |
| MS.gene005433.t1 | MTR_2g097463 | 54.930 | 71 | 30 | 1 | 25 | 93 | 268 | 338 | 1.52e-15 | 76.6 |
| MS.gene005433.t1 | MTR_4g064200 | 60.714 | 56 | 22 | 0 | 39 | 94 | 278 | 333 | 7.36e-15 | 74.3 |
| MS.gene005433.t1 | MTR_2g097467 | 49.351 | 77 | 32 | 2 | 25 | 94 | 262 | 338 | 2.22e-13 | 70.1 |
| MS.gene005433.t1 | MTR_2g097473 | 48.052 | 77 | 33 | 1 | 25 | 94 | 262 | 338 | 6.06e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005433.t1 | AT1G07530 | 51.087 | 92 | 37 | 2 | 11 | 94 | 354 | 445 | 1.12e-20 | 91.7 |
| MS.gene005433.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 27 | 117 | 139 | 247 | 3.29e-19 | 87.4 |
| MS.gene005433.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 27 | 117 | 139 | 247 | 3.29e-19 | 87.4 |
| MS.gene005433.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 27 | 117 | 303 | 411 | 3.73e-19 | 87.4 |
| MS.gene005433.t1 | AT1G07520 | 46.087 | 115 | 32 | 4 | 27 | 117 | 304 | 412 | 3.73e-19 | 87.4 |
| MS.gene005433.t1 | AT2G32290 | 72.222 | 54 | 15 | 0 | 179 | 232 | 219 | 272 | 3.87e-19 | 87.0 |
| MS.gene005433.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 179 | 232 | 103 | 156 | 1.72e-17 | 82.0 |
| MS.gene005433.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 179 | 232 | 103 | 156 | 1.72e-17 | 82.0 |
| MS.gene005433.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 179 | 232 | 156 | 209 | 1.86e-17 | 81.6 |
| MS.gene005433.t1 | AT4G15210 | 62.963 | 54 | 20 | 0 | 179 | 232 | 156 | 209 | 1.95e-17 | 82.0 |
| MS.gene005433.t1 | AT2G37650 | 51.351 | 74 | 36 | 0 | 33 | 106 | 335 | 408 | 6.73e-17 | 80.5 |
| MS.gene005433.t1 | AT2G37650 | 51.351 | 74 | 36 | 0 | 33 | 106 | 323 | 396 | 7.35e-17 | 80.5 |
| MS.gene005433.t1 | AT2G29060 | 47.436 | 78 | 41 | 0 | 25 | 102 | 264 | 341 | 1.62e-16 | 79.3 |
| MS.gene005433.t1 | AT2G29060 | 47.436 | 78 | 41 | 0 | 25 | 102 | 301 | 378 | 1.78e-16 | 79.3 |
| MS.gene005433.t1 | AT2G29065 | 60.714 | 56 | 22 | 0 | 39 | 94 | 246 | 301 | 3.20e-13 | 69.7 |
| MS.gene005433.t1 | AT5G59450 | 46.053 | 76 | 39 | 1 | 19 | 94 | 203 | 276 | 1.58e-12 | 67.4 |
| MS.gene005433.t1 | AT3G46600 | 36.364 | 110 | 52 | 2 | 26 | 118 | 193 | 301 | 3.10e-12 | 66.6 |
| MS.gene005433.t1 | AT3G46600 | 36.364 | 110 | 52 | 2 | 26 | 118 | 161 | 269 | 3.38e-12 | 66.6 |
| MS.gene005433.t1 | AT4G00490 | 49.091 | 55 | 28 | 0 | 179 | 233 | 236 | 290 | 9.65e-11 | 62.0 |
Find 54 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 1.1:-63729402 | MS.gene005433:CDS |
| GACTGGGTATTTCTTGGTAT+TGG | 0.274714 | 1.1:-63728744 | MS.gene005433:CDS |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 1.1:-63730641 | MS.gene005433:CDS |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 1.1:-63728859 | MS.gene005433:CDS |
| AGGAAGCATTATTGTCCTTC+AGG | 0.331966 | 1.1:-63731204 | MS.gene005433:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 1.1:-63729436 | MS.gene005433:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 1.1:-63729393 | MS.gene005433:CDS |
| TGCCTAGACTGGGTATTTCT+TGG | 0.342837 | 1.1:-63728750 | MS.gene005433:CDS |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 1.1:+63730611 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 1.1:-63731292 | MS.gene005433:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 1.1:-63729450 | MS.gene005433:intron |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 1.1:-63731224 | MS.gene005433:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 1.1:-63731254 | MS.gene005433:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 1.1:-63731302 | MS.gene005433:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 1.1:-63731357 | MS.gene005433:CDS |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 1.1:-63729410 | MS.gene005433:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 1.1:-63728801 | MS.gene005433:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 1.1:-63731320 | MS.gene005433:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 1.1:-63728549 | MS.gene005433:CDS |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 1.1:-63729392 | MS.gene005433:CDS |
| GCAGGTTGACCGAGGTATGA+TGG | 0.517717 | 1.1:-63728531 | None:intergenic |
| GCCACTTGAAGGTGGTCTCA+AGG | 0.522314 | 1.1:-63730453 | MS.gene005433:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 1.1:-63729334 | MS.gene005433:intron |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 1.1:+63728603 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 1.1:-63731310 | MS.gene005433:CDS |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 1.1:+63728786 | None:intergenic |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 1.1:-63731184 | MS.gene005433:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 1.1:+63731189 | None:intergenic |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 1.1:+63731277 | None:intergenic |
| TCCTTGAGACCACCTTCAAG+TGG | 0.557613 | 1.1:+63730452 | None:intergenic |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 1.1:+63729330 | None:intergenic |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 1.1:-63728585 | MS.gene005433:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 1.1:+63731278 | None:intergenic |
| TACCAAGAAATACCCAGTCT+AGG | 0.594121 | 1.1:+63728748 | None:intergenic |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 1.1:-63728810 | MS.gene005433:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 1.1:-63728820 | MS.gene005433:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 1.1:-63731349 | MS.gene005433:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 1.1:-63731148 | MS.gene005433:intron |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 1.1:-63728553 | MS.gene005433:CDS |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 1.1:-63731330 | MS.gene005433:CDS |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 1.1:+63728787 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 1.1:-63731354 | MS.gene005433:CDS |
| TGAAGGTGGTCTCAAGGACA+AGG | 0.634896 | 1.1:-63730447 | MS.gene005433:intron |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 1.1:-63728816 | MS.gene005433:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 1.1:-63731353 | MS.gene005433:CDS |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 1.1:+63729333 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 1.1:-63731319 | MS.gene005433:CDS |
| GAAATTGTTCCATCATACCT+CGG | 0.655476 | 1.1:+63728522 | None:intergenic |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 1.1:+63729441 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 1.1:-63731373 | MS.gene005433:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 1.1:-63731369 | MS.gene005433:CDS |
| TGTACGTGGCAGGTTGACCG+AGG | 0.702164 | 1.1:-63728539 | MS.gene005433:CDS |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 1.1:-63731326 | MS.gene005433:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 1.1:-63731329 | MS.gene005433:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAACAACTTTCAAA+TGG | + | chr1.1:63729652-63729671 | None:intergenic | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | + | chr1.1:63731164-63731183 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | - | chr1.1:63730848-63730867 | MS.gene005433:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | - | chr1.1:63729858-63729877 | MS.gene005433:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | + | chr1.1:63730849-63730868 | None:intergenic | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | - | chr1.1:63729388-63729407 | MS.gene005433:CDS | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | - | chr1.1:63729664-63729683 | MS.gene005433:intron | 15.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | - | chr1.1:63730141-63730160 | MS.gene005433:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | + | chr1.1:63729038-63729057 | None:intergenic | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | - | chr1.1:63729781-63729800 | MS.gene005433:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | + | chr1.1:63730198-63730217 | None:intergenic | 20.0% |
| !! | TATGTATATTATCTTGCATA+TGG | - | chr1.1:63729804-63729823 | MS.gene005433:intron | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | - | chr1.1:63730948-63730967 | MS.gene005433:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | + | chr1.1:63731027-63731046 | None:intergenic | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | - | chr1.1:63729885-63729904 | MS.gene005433:intron | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | + | chr1.1:63729124-63729143 | None:intergenic | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | - | chr1.1:63730779-63730798 | MS.gene005433:intron | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | + | chr1.1:63729123-63729142 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | + | chr1.1:63729225-63729244 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | - | chr1.1:63730279-63730298 | MS.gene005433:intron | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | - | chr1.1:63729226-63729245 | MS.gene005433:intron | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | + | chr1.1:63729216-63729235 | None:intergenic | 20.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | + | chr1.1:63731548-63731567 | None:intergenic | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+AGG | + | chr1.1:63730133-63730152 | None:intergenic | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | - | chr1.1:63729732-63729751 | MS.gene005433:intron | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | + | chr1.1:63729451-63729470 | None:intergenic | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | - | chr1.1:63729942-63729961 | MS.gene005433:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | - | chr1.1:63729294-63729313 | MS.gene005433:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | + | chr1.1:63729949-63729968 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | + | chr1.1:63731060-63731079 | None:intergenic | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | + | chr1.1:63730397-63730416 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | + | chr1.1:63730194-63730213 | None:intergenic | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | + | chr1.1:63729450-63729469 | None:intergenic | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | - | chr1.1:63730585-63730604 | MS.gene005433:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | - | chr1.1:63729407-63729426 | MS.gene005433:CDS | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | + | chr1.1:63730195-63730214 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | - | chr1.1:63729231-63729250 | MS.gene005433:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | - | chr1.1:63729667-63729686 | MS.gene005433:intron | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | - | chr1.1:63730083-63730102 | MS.gene005433:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | + | chr1.1:63730923-63730942 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | + | chr1.1:63730075-63730094 | None:intergenic | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | - | chr1.1:63730317-63730336 | MS.gene005433:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | - | chr1.1:63730682-63730701 | MS.gene005433:intron | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | - | chr1.1:63730202-63730221 | MS.gene005433:intron | 25.0% |
| !!! | GAAGTATCTTCAATTCTTTT+AGG | + | chr1.1:63728600-63728619 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | - | chr1.1:63729462-63729481 | MS.gene005433:intron | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | + | chr1.1:63731128-63731147 | None:intergenic | 25.0% |
| AATTTCTGTCTCCTTTACTT+TGG | - | chr1.1:63730538-63730557 | MS.gene005433:intron | 30.0% | |
| AGTGACTATGACAATGTAAT+TGG | - | chr1.1:63729507-63729526 | MS.gene005433:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | - | chr1.1:63728924-63728943 | MS.gene005433:intron | 30.0% | |
| CATTTCCTGAAAAATAACGA+AGG | + | chr1.1:63728676-63728695 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | - | chr1.1:63731482-63731501 | MS.gene005433:intron | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | - | chr1.1:63731289-63731308 | MS.gene005433:CDS | 30.0% | |
| TCATTTAAACTTACAGACAG+TGG | + | chr1.1:63731094-63731113 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | - | chr1.1:63729586-63729605 | MS.gene005433:intron | 30.0% | |
| TGAACATATATGTATACACG+TGG | + | chr1.1:63731482-63731501 | None:intergenic | 30.0% | |
| TTTCAGGAAATGCATATTGA+TGG | - | chr1.1:63728684-63728703 | MS.gene005433:intron | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | + | chr1.1:63729540-63729559 | None:intergenic | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | + | chr1.1:63729636-63729655 | None:intergenic | 30.0% |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | - | chr1.1:63729258-63729277 | MS.gene005433:intron | 30.0% |
| ! | GATTTGGTTTCTAAACCATA+AGG | + | chr1.1:63730907-63730926 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | - | chr1.1:63729753-63729772 | MS.gene005433:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | + | chr1.1:63729334-63729353 | None:intergenic | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | - | chr1.1:63729995-63730014 | MS.gene005433:intron | 30.0% |
| !!! | TAGTACCTTCGTTATTTTTC+AGG | - | chr1.1:63728668-63728687 | MS.gene005433:intron | 30.0% |
| AACACCAATTAAGGGAACTA+AGG | + | chr1.1:63731244-63731263 | None:intergenic | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | + | chr1.1:63731243-63731262 | None:intergenic | 35.0% | |
| AGACTTACAAATCCTTAGAC+AGG | + | chr1.1:63729613-63729632 | None:intergenic | 35.0% | |
| AGAGTAATCAGCCAAAGTAA+AGG | + | chr1.1:63730552-63730571 | None:intergenic | 35.0% | |
| CATATAGTTGAAGAACAGGT+AGG | + | chr1.1:63730129-63730148 | None:intergenic | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | - | chr1.1:63730639-63730658 | MS.gene005433:CDS | 35.0% | |
| CCAATGTCATTGAGATGATA+AGG | + | chr1.1:63728720-63728739 | None:intergenic | 35.0% | |
| CCTTATCATCTCAATGACAT+TGG | - | chr1.1:63728717-63728736 | MS.gene005433:intron | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | - | chr1.1:63730573-63730592 | MS.gene005433:intron | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | + | chr1.1:63731252-63731271 | None:intergenic | 35.0% | |
| GAGTGAAATCCACATAACAA+AGG | + | chr1.1:63730710-63730729 | None:intergenic | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | - | chr1.1:63731511-63731530 | MS.gene005433:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | + | chr1.1:63731005-63731024 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | - | chr1.1:63730712-63730731 | MS.gene005433:intron | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | + | chr1.1:63731253-63731272 | None:intergenic | 35.0% | |
| TGCAAATCAGGACAAACTAA+TGG | - | chr1.1:63730329-63730348 | MS.gene005433:intron | 35.0% | |
| TGTATCCTGCATATTGTTTC+AGG | - | chr1.1:63731510-63731529 | MS.gene005433:intron | 35.0% | |
| TTCTCTATAGGTCTGCTTTA+CGG | - | chr1.1:63730960-63730979 | MS.gene005433:intron | 35.0% | |
| TTGTGTTTGTTCATGAAGGT+TGG | - | chr1.1:63729298-63729317 | MS.gene005433:intron | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | - | chr1.1:63731237-63731256 | MS.gene005433:CDS | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | - | chr1.1:63730664-63730683 | MS.gene005433:intron | 35.0% |
| ! | ACTTCATTGATGGTTGAAGT+AGG | - | chr1.1:63729763-63729782 | MS.gene005433:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | + | chr1.1:63729063-63729082 | None:intergenic | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | - | chr1.1:63730086-63730105 | MS.gene005433:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | - | chr1.1:63730698-63730717 | MS.gene005433:intron | 35.0% |
| ! | GCATAAGCAGCTAATTCTTT+TGG | - | chr1.1:63730441-63730460 | MS.gene005433:intron | 35.0% |
| ! | TGATTTTCGCAACTTCCTTA+TGG | - | chr1.1:63730889-63730908 | MS.gene005433:intron | 35.0% |
| !! | CACTTTTAGGTCATTGCTTT+AGG | - | chr1.1:63730292-63730311 | MS.gene005433:intron | 35.0% |
| !! | TTTTTCAGAATGCCTAGACT+GGG | - | chr1.1:63731388-63731407 | MS.gene005433:intron | 35.0% |
| AGATATCTAAGTTCTCCAGC+AGG | + | chr1.1:63731365-63731384 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | + | chr1.1:63730015-63730034 | None:intergenic | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | - | chr1.1:63731338-63731357 | MS.gene005433:CDS | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | - | chr1.1:63731332-63731351 | MS.gene005433:CDS | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr1.1:63728894-63728913 | MS.gene005433:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | + | chr1.1:63730997-63731016 | None:intergenic | 40.0% | |
| GACTGGGTATTTCTTGGTAT+TGG | - | chr1.1:63731404-63731423 | MS.gene005433:intron | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | + | chr1.1:63731364-63731383 | None:intergenic | 40.0% | |
| GATTACTCTGCTACAAGTGA+TGG | - | chr1.1:63730563-63730582 | MS.gene005433:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | - | chr1.1:63730572-63730591 | MS.gene005433:intron | 40.0% | |
| GCTTTACTCATGATGCTGAA+AGG | - | chr1.1:63731563-63731582 | MS.gene005433:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | + | chr1.1:63729102-63729121 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | + | chr1.1:63729977-63729996 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | + | chr1.1:63730014-63730033 | None:intergenic | 40.0% | |
| TACCAAGAAATACCCAGTCT+AGG | + | chr1.1:63731403-63731422 | None:intergenic | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | - | chr1.1:63728757-63728776 | MS.gene005433:CDS | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | - | chr1.1:63731328-63731347 | MS.gene005433:CDS | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | - | chr1.1:63730658-63730677 | MS.gene005433:CDS | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr1.1:63728873-63728892 | None:intergenic | 40.0% | |
| ! | AACCATGCTGACTACCTAAA+AGG | + | chr1.1:63730234-63730253 | None:intergenic | 40.0% |
| ! | CTAGATGGCATTCACCTTTT+AGG | - | chr1.1:63730217-63730236 | MS.gene005433:intron | 40.0% |
| !! | AGGAAGCATTATTGTCCTTC+AGG | - | chr1.1:63728944-63728963 | MS.gene005433:intron | 40.0% |
| !!! | CTTTTTCAGAATGCCTAGAC+TGG | - | chr1.1:63731387-63731406 | MS.gene005433:intron | 40.0% |
| AAACAGCATCTCGTCTTTCG+CGG | - | chr1.1:63730738-63730757 | MS.gene005433:intron | 45.0% | |
| AAGGCACGTTCGAAGAAACA+AGG | - | chr1.1:63728818-63728837 | MS.gene005433:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr1.1:63728760-63728779 | MS.gene005433:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr1.1:63728846-63728865 | MS.gene005433:CDS | 45.0% | |
| AGCACCCTGAAACAATATGC+AGG | + | chr1.1:63731518-63731537 | None:intergenic | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | - | chr1.1:63728819-63728838 | MS.gene005433:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+TGG | - | chr1.1:63728964-63728983 | MS.gene005433:intron | 45.0% | |
| ATCGTTGCGTGCTGAACAAA+AGG | - | chr1.1:63728745-63728764 | MS.gene005433:CDS | 45.0% | |
| ATCTTGCATGGTCCTGTCTA+AGG | - | chr1.1:63729598-63729617 | MS.gene005433:intron | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | - | chr1.1:63730756-63730775 | MS.gene005433:intron | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | + | chr1.1:63728874-63728893 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr1.1:63728829-63728848 | MS.gene005433:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | - | chr1.1:63730755-63730774 | MS.gene005433:intron | 45.0% | |
| TGCCTAGACTGGGTATTTCT+TGG | - | chr1.1:63731398-63731417 | MS.gene005433:intron | 45.0% | |
| TTCCTTACCCATGGTCAGAT+TGG | - | chr1.1:63730004-63730023 | MS.gene005433:intron | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | - | chr1.1:63728749-63728768 | MS.gene005433:CDS | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | - | chr1.1:63731595-63731614 | MS.gene005433:intron | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr1.1:63728856-63728875 | MS.gene005433:CDS | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr1.1:63728791-63728810 | MS.gene005433:CDS | 45.0% |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | - | chr1.1:63729684-63729703 | MS.gene005433:intron | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr1.1:63728795-63728814 | MS.gene005433:CDS | 45.0% |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | - | chr1.1:63730229-63730248 | MS.gene005433:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | - | chr1.1:63729687-63729706 | MS.gene005433:intron | 45.0% |
| !! | ATAAAAAAAATATTGAAATA+TGG | + | chr1.1:63729357-63729376 | None:intergenic | 5.0% |
| !!! | TTCAATATTTTTTTTATTTA+TGG | - | chr1.1:63729360-63729379 | MS.gene005433:CDS | 5.0% |
| ACCATCTGGAGAAGAAGAGG+AGG | + | chr1.1:63730818-63730837 | None:intergenic | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | - | chr1.1:63730814-63730833 | MS.gene005433:intron | 50.0% | |
| ATAGGCAACGCGGAGTTTGA+AGG | + | chr1.1:63730987-63731006 | None:intergenic | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | + | chr1.1:63730009-63730028 | None:intergenic | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | - | chr1.1:63728822-63728841 | MS.gene005433:CDS | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | + | chr1.1:63730821-63730840 | None:intergenic | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr1.1:63728828-63728847 | MS.gene005433:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr1.1:63728962-63728981 | None:intergenic | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | - | chr1.1:63731599-63731618 | MS.gene005433:intron | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | + | chr1.1:63730429-63730448 | None:intergenic | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr1.1:63728779-63728798 | MS.gene005433:CDS | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | + | chr1.1:63729699-63729718 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | - | chr1.1:63730746-63730765 | MS.gene005433:intron | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | - | chr1.1:63729701-63729720 | MS.gene005433:intron | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | - | chr1.1:63728799-63728818 | MS.gene005433:CDS | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | - | chr1.1:63728775-63728794 | MS.gene005433:CDS | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr1.1:63728794-63728813 | MS.gene005433:CDS | 50.0% |
| !! | CTTTGGAGTCACGAACCATC+TGG | + | chr1.1:63730832-63730851 | None:intergenic | 50.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | - | chr1.1:63730369-63730388 | MS.gene005433:intron | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr1.1:63728838-63728857 | MS.gene005433:CDS | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | - | chr1.1:63730364-63730383 | MS.gene005433:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | + | chr1.1:63730374-63730393 | None:intergenic | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | - | chr1.1:63729000-63729019 | MS.gene005433:intron | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | - | chr1.1:63729695-63729714 | MS.gene005433:intron | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | + | chr1.1:63730424-63730443 | None:intergenic | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | + | chr1.1:63730370-63730389 | None:intergenic | 55.0% |
| ACGCCGCACCTTGGTTGTAG+AGG | - | chr1.1:63730418-63730437 | MS.gene005433:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | - | chr1.1:63730419-63730438 | MS.gene005433:intron | 60.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | - | chr1.1:63729004-63729023 | MS.gene005433:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | - | chr1.1:63731609-63731628 | MS.gene005433:CDS | 60.0% |
| ACGTCTGCAACGCCGCACCT+TGG | - | chr1.1:63730409-63730428 | MS.gene005433:intron | 65.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | - | chr1.1:63731347-63731366 | MS.gene005433:CDS | 65.0% | |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | - | chr1.1:63729010-63729029 | MS.gene005433:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 63728534 | 63731636 | 63728534 | ID=MS.gene005433 |
| chr1.1 | mRNA | 63728534 | 63731636 | 63728534 | ID=MS.gene005433.t1;Parent=MS.gene005433 |
| chr1.1 | exon | 63731600 | 63731636 | 63731600 | ID=MS.gene005433.t1.exon1;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63731600 | 63731636 | 63731600 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63731149 | 63731393 | 63731149 | ID=MS.gene005433.t1.exon2;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63731149 | 63731393 | 63731149 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63730622 | 63730678 | 63730622 | ID=MS.gene005433.t1.exon3;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63730622 | 63730678 | 63730622 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63730448 | 63730510 | 63730448 | ID=MS.gene005433.t1.exon4;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63730448 | 63730510 | 63730448 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63729335 | 63729466 | 63729335 | ID=MS.gene005433.t1.exon5;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63729335 | 63729466 | 63729335 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63728734 | 63728898 | 63728734 | ID=MS.gene005433.t1.exon6;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63728734 | 63728898 | 63728734 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| chr1.1 | exon | 63728534 | 63728638 | 63728534 | ID=MS.gene005433.t1.exon7;Parent=MS.gene005433.t1 |
| chr1.1 | CDS | 63728534 | 63728638 | 63728534 | ID=cds.MS.gene005433.t1;Parent=MS.gene005433.t1 |
| Gene Sequence |
| Protein sequence |
