AlfalfaGEDB | MS.gene005434

M. sativa cultivar XinJiangDaYe / MS.gene005434

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005434.t1	XP_013450953.1	98.9	277	3	0	1	277	1	277	2.20E-131	478.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005434.t1	Q8LAT0	50.9	283	97	8	1	268	16	271	5.2e-44	179.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005434.t1	A0A072U5Q1	98.9	277	3	0	1	277	1	277	1.6e-131	478.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene005434.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005434.t1	MTR_6g011610	98.556	277	4	0	1	277	1	277	0.0	568
MS.gene005434.t1	MTR_6g011610	91.697	277	4	1	1	277	1	258	0.0	518
MS.gene005434.t1	MTR_7g010020	60.137	291	75	10	1	269	1	272	9.58e-107	311
MS.gene005434.t1	MTR_8g468210	50.667	300	99	9	1	272	1	279	7.64e-80	243
MS.gene005434.t1	MTR_5g039000	53.333	255	77	6	48	272	38	280	3.25e-71	221
MS.gene005434.t1	MTR_3g080100	45.960	198	92	4	82	265	3	199	5.98e-40	138
MS.gene005434.t1	MTR_5g038280	44.215	242	93	10	41	259	39	261	8.73e-40	141
MS.gene005434.t1	MTR_3g080100	45.960	198	92	4	82	265	42	238	1.31e-39	139
MS.gene005434.t1	MTR_8g089895	60.748	107	41	1	86	191	43	149	5.59e-37	133
MS.gene005434.t1	MTR_6g007647	64.000	100	36	0	92	191	29	128	9.80e-37	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005434.t1	AT5G15150	52.881	295	100	12	1	270	22	302	8.06e-84	254
MS.gene005434.t1	AT3G01220	48.780	287	103	10	1	270	16	275	1.13e-79	243
MS.gene005434.t1	AT1G69780	46.732	306	112	10	1	274	7	293	2.38e-67	211
MS.gene005434.t1	AT1G26960	49.765	213	87	5	73	274	51	254	5.72e-58	186
MS.gene005434.t1	AT5G65310	52.448	143	57	2	80	211	34	176	3.65e-39	139
MS.gene005434.t1	AT5G65310	52.448	143	57	2	80	211	52	194	3.83e-39	139
MS.gene005434.t1	AT2G22430	64.078	103	37	0	89	191	55	157	1.50e-38	137
MS.gene005434.t1	AT4G40060	63.636	99	36	0	93	191	56	154	7.49e-38	135
MS.gene005434.t1	AT3G01470	62.000	100	38	0	92	191	64	163	2.55e-37	133
MS.gene005434.t1	AT2G46680	55.319	94	42	0	97	190	33	126	6.02e-29	111

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Find 44 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGACTGCTTTGAAAA+TGG	0.299378	1.1:-63733519	MS.gene005434:CDS
AAACAACAAATTACATGCAG+AGG	0.604512	1.1:-63735002	MS.gene005434:intron
AAAGTGTTGATGAGGTGGAA+AGG	0.650161	1.1:+63735747	None:intergenic
AAATGGGTGAAAAGAAGAAG+AGG	0.594234	1.1:-63735258	MS.gene005434:CDS
AACCATATAGCTACTTGTCT+AGG	0.577432	1.1:+63735133	None:intergenic
AACCTAGACAAGTAGCTATA+TGG	0.403297	1.1:-63735135	MS.gene005434:CDS
AAGATGAAAGTGTGAGAAGG+TGG	0.602335	1.1:+63735838	None:intergenic
AAGTGTGATGAATTAGTGCA+TGG	0.667963	1.1:-63735319	MS.gene005434:CDS
AATGAAGGTTCTTGGAGCAA+TGG	0.528783	1.1:-63733474	MS.gene005434:CDS
AATGCAATTGGCTAAAGCTT+TGG	0.380110	1.1:-63735164	MS.gene005434:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTTGCAACGTAACTT+CGG	+	chr1.1:63733450-63733469	None:intergenic	30.0%
AAACAACAAATTACATGCAG+AGG	-	chr1.1:63734120-63734139	MS.gene005434:intron	30.0%
AATCAAAGTCTATATCAAGG+GGG	+	chr1.1:63734594-63734613	None:intergenic	30.0%
ACCCTCAAAAAAGAAAATGA+AGG	-	chr1.1:63735633-63735652	MS.gene005434:intron	30.0%
ATCAATTATCAGACGAAGAA+GGG	-	chr1.1:63733834-63733853	MS.gene005434:intron	30.0%
ATGTATATGGTTTCAAATCG+AGG	+	chr1.1:63735501-63735520	None:intergenic	30.0%
ATGTTGCTATGAAAAAGACA+AGG	-	chr1.1:63735086-63735105	MS.gene005434:CDS	30.0%
ATTTGATGTGTGTTTGTGAA+TGG	-	chr1.1:63734611-63734630	MS.gene005434:intron	30.0%
CACTATTAAATTTGCAGTTC+TGG	+	chr1.1:63735022-63735041	None:intergenic	30.0%
CATGAAGACCTTACTATATA+TGG	-	chr1.1:63735556-63735575	MS.gene005434:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	63733275	63735869	63733275	ID=MS.gene005434
chr1.1	mRNA	63733275	63735869	63733275	ID=MS.gene005434.t1;Parent=MS.gene005434
chr1.1	exon	63735743	63735869	63735743	ID=MS.gene005434.t1.exon1;Parent=MS.gene005434.t1
chr1.1	CDS	63735743	63735869	63735743	ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1
chr1.1	exon	63735003	63735427	63735003	ID=MS.gene005434.t1.exon2;Parent=MS.gene005434.t1
chr1.1	CDS	63735003	63735427	63735003	ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1
chr1.1	exon	63733275	63733556	63733275	ID=MS.gene005434.t1.exon3;Parent=MS.gene005434.t1
chr1.1	CDS	63733275	63733556	63733275	ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1

Gene Sequence

>MS.gene005434

ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATGAAAACATACTTTCATCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTCACACTCAAACTTTTTCTTGTGTGTGTTAAATTGCATCTGTAGCCGAAGTTACGTTGCAAACTTTTATATTGAAAAAAAGTTAGACCGATGTGGTCAAAATTGTGATTGTAATACCGTTGCAAAAACATCAATATTTGTCGTTATATTATCGTTGCAGATTGCAATTTAAAACCATGACCACAATATCTTCTCTCTTCTCTATTTCTAATGAAAAAATGTTCCAAAAATAAACTTTTTTAAAAGAAAAATCTTTATAATCAGTGGTTATTTTTCATTAAAATTTTTACATATGTTTTTTGTTTGTTATTGTAGGTAGTGGAAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATAAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGACGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAGAGAAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGACACACTTAAGGCTCAAAACAACAAATTACATGCAGAGGTAATTACTAATTAATACTAATGATAGTACTAATCATATATATATATATATATATATATATATATATATATATAGTTAGTGTAATTAAATCTTTAAAATTTCAATACTCTACCTCTAAAATTTCTTTCTTGATTAATTATACTATTGAGTGATTATTTTTGAACAAAAGAAGACTTTGATTAATTTGGATCTTGGTGGTAAATTAATTAACTGGGTCATTAGTCATTTTCAATAAAATGGAGATGTCTTAATCTTGATTCAAAATATAATCTTAAAATAGTTCAAATTTTTTCAATGTTCATGAACAAAAATAGAGTGTGACTTGACTCCAATATCCAATTTTTTATTCTTGAAGATGATTAATAAATTGTATTTTTTGGAAGTAAAGGAAGAAGACTTTTCTTTCACTTTGGTTGTTAATTTTTTTTCCTCATAGTTTTTCATATTTTCCCCCTTGATATAGACTTTGATTTGATGTGTGTTTGTGAATGGATTACATCAATGCAGAACAAGTTTTCCTGCCATTGAAGGCTTTAATCATTTAGTCTTTTCAATACTTATCCTTGTCTCCAATAATGAATGTGTAATTAACATATATATTTTTATATTTGAAGGAAAAAAATACCAAACTTTTATGTTATTTTGATTTTTTTTAATGCAAAATTGTTTATTTATTTTCACTTCTTTAATTTGAATTAGTTATAAGAGGAATTTTTTTTTTCTTCTAGCCTATTTACTAAGAAAGCTCAATTTAATTGATTTAGTTATGATCTCACATGGTCTTTATGCACTTTTTAAAGTAATTGATTTTGTTATTAACTTTCTGCTACCTTGATTGTTAGTTGATCATTCATAGGACTAGCCAGTGTGTCACAATCCAGAACTGCAAATTTAATAGTGATATGTTTGTTTTTCTATTCAATACTGTTTTATATAACTATTCCATGTTGCTATGAAAAAGACAAGGTAGCTTTTGATCTGATTAGTACATAGTTGTCCACATGGAAGCATATGAAAGTGGAATCAAAAGCTTTATTCATACCATGATTTTAAATTGTGATTGCAGTCGCAGTTTTAATTATGTTTCGAGCTTTTATATTGCGGTAAAATGTTGGCAAATGCGAGTAATGTAGCCGGAATTGCGATGCTACGAGAGACCTCTAAAAAAATTTACGGCACCCACAACTACGGTTATGGACAACAATTACAGTTGTGATGCTATTGCAGATATTTCTAAAATCTTTATATTGCGTCCGCAATATAAATGATTTTAAGATTTTTGCAACGGCATCTCAACTGCAATTGCGACTGTATTTTCCTGTAATATAAAGGTTTGCAACGTATCCACAATTTTGACCTCGATTTGAAACCATATACATACAATCATTTTTTTTTATAATGTGATACATACATTCATGAAGACCTTACTATATATGGTGTTTGCAGCTACAAACTCTAAAGAAAAGGGACTGCTTTGAAAATGGAACAATTACCCTCAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTGGACCTTTCCAGAACACCAAATTCACTTAAGCCTACAAGCATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAGGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCAATTCCGTTAA

Protein sequence

>MS.gene005434.t1

MAFPPSHTFIFQTHEDHHHENILSSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIESNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNNKLHAELQTLKKRDCFENGTITLKKENEGSWSNGSDNSSDMNLDLSRTPNSLKPTSMTQLLQCSSRSDLQDEGFCNMFNNIDEQQSLWPWTDHQQHQFR