AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005434

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005434.t1 MTR_6g011610 98.556 277 4 0 1 277 1 277 0.0 568
MS.gene005434.t1 MTR_6g011610 91.697 277 4 1 1 277 1 258 0.0 518
MS.gene005434.t1 MTR_7g010020 60.137 291 75 10 1 269 1 272 9.58e-107 311
MS.gene005434.t1 MTR_8g468210 50.667 300 99 9 1 272 1 279 7.64e-80 243
MS.gene005434.t1 MTR_5g039000 53.333 255 77 6 48 272 38 280 3.25e-71 221
MS.gene005434.t1 MTR_3g080100 45.960 198 92 4 82 265 3 199 5.98e-40 138
MS.gene005434.t1 MTR_5g038280 44.215 242 93 10 41 259 39 261 8.73e-40 141
MS.gene005434.t1 MTR_3g080100 45.960 198 92 4 82 265 42 238 1.31e-39 139
MS.gene005434.t1 MTR_8g089895 60.748 107 41 1 86 191 43 149 5.59e-37 133
MS.gene005434.t1 MTR_6g007647 64.000 100 36 0 92 191 29 128 9.80e-37 131
MS.gene005434.t1 MTR_6g007647 64.000 100 36 0 92 191 63 162 2.02e-36 131
MS.gene005434.t1 MTR_3g086790 54.032 124 48 1 77 191 32 155 8.16e-36 130
MS.gene005434.t1 MTR_8g469430 68.750 96 30 0 96 191 89 184 1.20e-35 129
MS.gene005434.t1 MTR_4g107650 50.376 133 59 1 80 212 79 204 1.87e-34 127
MS.gene005434.t1 MTR_7g103340 55.435 92 41 0 95 186 62 153 4.85e-28 108
MS.gene005434.t1 MTR_3g092150 56.044 91 40 0 98 188 40 130 9.29e-28 107
MS.gene005434.t1 MTR_1g061660 57.609 92 39 0 95 186 58 149 3.34e-27 105
MS.gene005434.t1 MTR_8g026960 53.488 86 40 0 103 188 41 126 2.25e-25 101
MS.gene005434.t1 MTR_4g100550 46.154 104 55 1 80 183 105 207 3.70e-20 87.8
MS.gene005434.t1 MTR_5g019680 51.579 95 46 0 96 190 53 147 1.38e-19 84.7
MS.gene005434.t1 MTR_5g019650 51.064 94 46 0 96 189 53 146 2.59e-19 84.3
MS.gene005434.t1 MTR_2g061030 42.276 123 48 2 83 189 171 286 1.06e-17 82.0
MS.gene005434.t1 MTR_5g014890 46.154 104 49 1 86 189 113 209 2.16e-17 80.1
MS.gene005434.t1 MTR_7g093430 39.726 146 77 3 44 189 112 246 2.31e-17 80.5
MS.gene005434.t1 MTR_5g013010 46.000 100 53 1 84 183 125 223 2.96e-17 80.1
MS.gene005434.t1 MTR_1g017090 50.000 94 40 1 96 189 130 216 9.83e-17 78.6
MS.gene005434.t1 MTR_4g097600 45.192 104 49 2 86 189 118 213 1.43e-16 77.8
MS.gene005434.t1 MTR_1g054285 37.671 146 85 2 75 220 139 278 1.48e-16 78.2
MS.gene005434.t1 MTR_4g126900 47.253 91 41 1 99 189 91 174 1.53e-16 77.0
MS.gene005434.t1 MTR_8g006705 48.864 88 45 0 96 183 146 233 1.78e-16 78.2
MS.gene005434.t1 MTR_4g084750 50.000 88 44 0 96 183 65 152 8.49e-16 74.3
MS.gene005434.t1 MTR_3g103590 36.170 141 68 3 96 221 145 278 9.29e-14 70.5
MS.gene005434.t1 MTR_5g013010 53.125 64 29 1 84 147 125 187 3.73e-12 64.3
MS.gene005434.t1 MTR_2g038625 43.182 88 50 0 96 183 82 169 2.59e-11 62.4
MS.gene005434.t1 MTR_2g038580 43.182 88 50 0 96 183 82 169 2.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005434.t1 AT5G15150 52.881 295 100 12 1 270 22 302 8.06e-84 254
MS.gene005434.t1 AT3G01220 48.780 287 103 10 1 270 16 275 1.13e-79 243
MS.gene005434.t1 AT1G69780 46.732 306 112 10 1 274 7 293 2.38e-67 211
MS.gene005434.t1 AT1G26960 49.765 213 87 5 73 274 51 254 5.72e-58 186
MS.gene005434.t1 AT5G65310 52.448 143 57 2 80 211 34 176 3.65e-39 139
MS.gene005434.t1 AT5G65310 52.448 143 57 2 80 211 52 194 3.83e-39 139
MS.gene005434.t1 AT2G22430 64.078 103 37 0 89 191 55 157 1.50e-38 137
MS.gene005434.t1 AT4G40060 63.636 99 36 0 93 191 56 154 7.49e-38 135
MS.gene005434.t1 AT3G01470 62.000 100 38 0 92 191 64 163 2.55e-37 133
MS.gene005434.t1 AT2G46680 55.319 94 42 0 97 190 33 126 6.02e-29 111
MS.gene005434.t1 AT3G61890 55.556 90 40 0 99 188 33 122 4.11e-27 105
MS.gene005434.t1 AT2G46680 54.545 88 40 0 97 184 33 120 1.76e-26 104
MS.gene005434.t1 AT1G27045 46.400 125 63 1 96 216 68 192 6.57e-26 102
MS.gene005434.t1 AT1G27045 46.400 125 63 1 96 216 17 141 1.12e-25 100
MS.gene005434.t1 AT1G27045 46.400 125 63 1 96 216 25 149 1.23e-25 100
MS.gene005434.t1 AT1G27045 46.400 125 63 1 96 216 25 149 1.23e-25 100
MS.gene005434.t1 AT1G27045 52.632 95 45 0 96 190 68 162 1.13e-24 99.8
MS.gene005434.t1 AT5G03790 46.847 111 56 2 96 204 77 186 7.63e-24 97.1
MS.gene005434.t1 AT2G18550 42.657 143 65 3 96 221 61 203 3.20e-22 92.4
MS.gene005434.t1 AT2G36610 44.348 115 53 3 95 198 70 184 4.10e-22 91.3
MS.gene005434.t1 AT5G03790 49.462 93 40 1 96 188 77 162 4.36e-22 91.3
MS.gene005434.t1 AT4G36740 52.222 90 43 0 96 185 55 144 7.86e-21 88.6
MS.gene005434.t1 AT4G36740 52.222 90 43 0 96 185 56 145 8.63e-21 88.6
MS.gene005434.t1 AT5G66700 47.573 103 52 1 85 185 58 160 6.09e-20 86.3
MS.gene005434.t1 AT5G53980 46.000 100 54 0 87 186 2 101 7.00e-20 84.3
MS.gene005434.t1 AT2G01430 45.045 111 53 2 79 189 123 225 1.12e-18 84.0
MS.gene005434.t1 AT4G37790 47.115 104 46 2 86 189 118 212 8.09e-18 81.6
MS.gene005434.t1 AT5G47370 41.322 121 56 2 80 189 103 219 3.93e-17 79.7
MS.gene005434.t1 AT2G22800 47.115 104 46 2 86 189 105 199 4.48e-17 79.3
MS.gene005434.t1 AT5G06710 36.257 171 99 3 69 233 161 327 5.13e-17 80.1
MS.gene005434.t1 AT4G17460 46.667 105 51 2 86 189 124 224 6.63e-17 79.0
MS.gene005434.t1 AT3G60390 41.322 121 69 2 63 183 131 249 7.59e-17 79.3
MS.gene005434.t1 AT2G44910 46.591 88 47 0 96 183 163 250 2.52e-15 75.1
MS.gene005434.t1 AT4G16780 43.878 98 53 1 86 183 121 216 5.62e-15 73.6
MS.gene005434.t1 AT1G70920 48.864 88 45 0 96 183 69 156 3.01e-14 70.5
MS.gene005434.t1 AT1G70920 48.864 88 45 0 96 183 39 126 3.30e-14 69.7
MS.gene005434.t1 AT2G01430 48.571 70 35 1 79 148 123 191 1.68e-12 65.5
MS.gene005434.t1 AT5G06710 44.444 81 43 1 69 147 161 241 8.86e-11 61.6

Find 44 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCTTGCTCTTCTATTT+TGG 0.086155 1.1:+63735110 None:intergenic
TTGATGAGCAGCAGAGTTTA+TGG 0.202182 1.1:-63733311 MS.gene005434:CDS
ATGCAATTGGCTAAAGCTTT+GGG 0.280624 1.1:-63735163 MS.gene005434:CDS
CTTAAGTGAATTTGGTGTTC+TGG 0.287773 1.1:+63733416 None:intergenic
AAAAGGGACTGCTTTGAAAA+TGG 0.299378 1.1:-63733519 MS.gene005434:CDS
CCACCTCATCAACACTTTCA+AGG 0.311971 1.1:-63735742 MS.gene005434:intron
CTTGTAGGCTTAAGTGAATT+TGG 0.316425 1.1:+63733408 None:intergenic
AGCAGCAGAGTTTATGGCCT+TGG 0.338430 1.1:-63733305 MS.gene005434:CDS
GAAGCAATTTGATTCTCTTA+AGG 0.348897 1.1:-63735050 MS.gene005434:CDS
TCTTCGAGTCTTAACGGAAT+TGG 0.375678 1.1:+63733265 None:intergenic
AATGCAATTGGCTAAAGCTT+TGG 0.380110 1.1:-63735164 MS.gene005434:CDS
CTGATCTTGAAGAGCATTGA+AGG 0.381692 1.1:+63733373 None:intergenic
AACCTAGACAAGTAGCTATA+TGG 0.403297 1.1:-63735135 MS.gene005434:CDS
AGGAGCTGTGTCATGCTTGT+AGG 0.404646 1.1:+63733393 None:intergenic
CGAAGAAGGGTACTCACAAA+TGG 0.418642 1.1:-63735275 MS.gene005434:CDS
AGCTACAAACTCTAAAGAAA+AGG 0.429689 1.1:-63733536 MS.gene005434:CDS
AGATCAGATCTTCAAGATGA+AGG 0.470396 1.1:-63733357 MS.gene005434:CDS
GGCTGATAATGACACACTTA+AGG 0.472252 1.1:-63735029 MS.gene005434:CDS
TGTTGATGAGGTGGAAAGGA+AGG 0.483232 1.1:+63735751 None:intergenic
TAACAGCTCAGATATGAATC+TGG 0.487547 1.1:-63733445 MS.gene005434:CDS
GCTACAAACTCTAAAGAAAA+GGG 0.493192 1.1:-63733535 MS.gene005434:CDS
GATCAATTATCAGACGAAGA+AGG 0.496106 1.1:-63735289 MS.gene005434:CDS
ATGAGGTGGAAAGGAAGGAT+AGG 0.501061 1.1:+63735756 None:intergenic
GTGAATTTGGTGTTCTGGAA+AGG 0.501153 1.1:+63733421 None:intergenic
ATCAATTATCAGACGAAGAA+GGG 0.523907 1.1:-63735288 MS.gene005434:CDS
AATGAAGGTTCTTGGAGCAA+TGG 0.528783 1.1:-63733474 MS.gene005434:CDS
CTCTATGCCTGAAAATGACA+TGG 0.537665 1.1:+63735363 None:intergenic
GAAGAAGGGTACTCACAAAT+GGG 0.547920 1.1:-63735274 MS.gene005434:CDS
TGCAATTGGCTAAAGCTTTG+GGG 0.570828 1.1:-63735162 MS.gene005434:CDS
AACCATATAGCTACTTGTCT+AGG 0.577432 1.1:+63735133 None:intergenic
ATTGTAGGTAGTGGAAGTAA+TGG 0.594104 1.1:-63735412 MS.gene005434:intron
AAATGGGTGAAAAGAAGAAG+AGG 0.594234 1.1:-63735258 MS.gene005434:CDS
AAGATGAAAGTGTGAGAAGG+TGG 0.602335 1.1:+63735838 None:intergenic
CCTTGAAAGTGTTGATGAGG+TGG 0.603326 1.1:+63735742 None:intergenic
AAACAACAAATTACATGCAG+AGG 0.604512 1.1:-63735002 MS.gene005434:intron
GTAGGTAGTGGAAGTAATGG+TGG 0.615975 1.1:-63735409 MS.gene005434:intron
GTGAGAAGGTGGAAAAGCCA+TGG 0.640795 1.1:+63735849 None:intergenic
GGTTCCAAAATAGAAGAGCA+AGG 0.645595 1.1:-63735114 MS.gene005434:CDS
AAAGTGTTGATGAGGTGGAA+AGG 0.650161 1.1:+63735747 None:intergenic
TGAAAGATGAAAGTGTGAGA+AGG 0.650915 1.1:+63735835 None:intergenic
AAGTGTGATGAATTAGTGCA+TGG 0.667963 1.1:-63735319 MS.gene005434:CDS
TGACCTTGAAAGTGTTGATG+AGG 0.676035 1.1:+63735739 None:intergenic
TGTTGCTGATGATCAGTCCA+AGG 0.684041 1.1:+63733288 None:intergenic
TCCAAAATAGAAGAGCAAGG+TGG 0.719995 1.1:-63735111 MS.gene005434:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAAAAAAGTTTATTTT+TGG + chr1.1:63733628-63733647 None:intergenic 10.0%
!!! GATTAATAAATTGTATTTTT+TGG - chr1.1:63734499-63734518 MS.gene005434:intron 10.0%
!! AAAAAATGATTGTATGTATA+TGG + chr1.1:63735514-63735533 None:intergenic 15.0%
!! AAGAATAAAAAATTGGATAT+TGG + chr1.1:63734473-63734492 None:intergenic 15.0%
!! ATCAAAATAACATAAAAGTT+TGG + chr1.1:63734769-63734788 None:intergenic 15.0%
!! TAATTTGAATTAGTTATAAG+AGG - chr1.1:63734828-63734847 MS.gene005434:intron 15.0%
!! TCTTAAAATCATTTATATTG+CGG + chr1.1:63735398-63735417 None:intergenic 15.0%
!!! ATTAGTCATTTTCAATAAAA+TGG - chr1.1:63734359-63734378 MS.gene005434:intron 15.0%
!! AAAGAAGACTTTGATTAATT+TGG - chr1.1:63734307-63734326 MS.gene005434:intron 20.0%
!! AGAAAAATCTTTATAATCAG+TGG - chr1.1:63733646-63733665 MS.gene005434:intron 20.0%
!! CATCTTCAAGAATAAAAAAT+TGG + chr1.1:63734480-63734499 None:intergenic 20.0%
!! GTTAATTACACATTCATTAT+TGG + chr1.1:63734714-63734733 None:intergenic 20.0%
!!! AAATATTGATGTTTTTGCAA+CGG + chr1.1:63733521-63733540 None:intergenic 20.0%
!!! AATCAAGAAAGAAATTTTAG+AGG + chr1.1:63734256-63734275 None:intergenic 20.0%
!!! ATTGTATTTTTTGGAAGTAA+AGG - chr1.1:63734508-63734527 MS.gene005434:intron 20.0%
!!! TGATTTTAAGATTTTTGCAA+CGG - chr1.1:63735407-63735426 MS.gene005434:CDS 20.0%
!!! TGTATTTTCCTGTAATATAA+AGG - chr1.1:63735451-63735470 MS.gene005434:intron 20.0%
!!! TGTTTTTTGTTTGTTATTGT+AGG - chr1.1:63733695-63733714 MS.gene005434:intron 20.0%
! AAAAAGAAAATGAAGGTTCT+TGG - chr1.1:63735640-63735659 MS.gene005434:intron 25.0%
! AAATCAAAGTCTATATCAAG+GGG + chr1.1:63734595-63734614 None:intergenic 25.0%
! ATTGAGCTTTCTTAGTAAAT+AGG + chr1.1:63734873-63734892 None:intergenic 25.0%
! ATTGTTAGTTGATCATTCAT+AGG - chr1.1:63734976-63734995 MS.gene005434:intron 25.0%
! CAAATCAAAGTCTATATCAA+GGG + chr1.1:63734596-63734615 None:intergenic 25.0%
! GGAAAATATGAAAAACTATG+AGG + chr1.1:63734573-63734592 None:intergenic 25.0%
! TAAATGATTAAAGCCTTCAA+TGG + chr1.1:63734666-63734685 None:intergenic 25.0%
! TCAAATCAAAGTCTATATCA+AGG + chr1.1:63734597-63734616 None:intergenic 25.0%
! TGGTGGTAAATTAATTAACT+GGG - chr1.1:63734334-63734353 MS.gene005434:intron 25.0%
! TTTATATTGCGGTAAAATGT+TGG - chr1.1:63735234-63735253 MS.gene005434:CDS 25.0%
!! ACTTTGATTAATTTGGATCT+TGG - chr1.1:63734314-63734333 MS.gene005434:intron 25.0%
!! GAGACCTCTAAAAAAATTTA+CGG - chr1.1:63735295-63735314 MS.gene005434:CDS 25.0%
!! GCAATCACAATTTAAAATCA+TGG + chr1.1:63735186-63735205 None:intergenic 25.0%
!! TTGGTGGTAAATTAATTAAC+TGG - chr1.1:63734333-63734352 MS.gene005434:intron 25.0%
!!! AACCTTCATTTTCTTTTTTG+AGG + chr1.1:63735638-63735657 None:intergenic 25.0%
!!! ACCTTCATTTTCTTTTTTGA+GGG + chr1.1:63735637-63735656 None:intergenic 25.0%
AAAAGTTTGCAACGTAACTT+CGG + chr1.1:63733450-63733469 None:intergenic 30.0%
AAACAACAAATTACATGCAG+AGG - chr1.1:63734120-63734139 MS.gene005434:intron 30.0%
AATCAAAGTCTATATCAAGG+GGG + chr1.1:63734594-63734613 None:intergenic 30.0%
ACCCTCAAAAAAGAAAATGA+AGG - chr1.1:63735633-63735652 MS.gene005434:intron 30.0%
ATCAATTATCAGACGAAGAA+GGG - chr1.1:63733834-63733853 MS.gene005434:intron 30.0%
ATGTATATGGTTTCAAATCG+AGG + chr1.1:63735501-63735520 None:intergenic 30.0%
ATGTTGCTATGAAAAAGACA+AGG - chr1.1:63735086-63735105 MS.gene005434:CDS 30.0%
ATTTGATGTGTGTTTGTGAA+TGG - chr1.1:63734611-63734630 MS.gene005434:intron 30.0%
CACTATTAAATTTGCAGTTC+TGG + chr1.1:63735022-63735041 None:intergenic 30.0%
CATGAAGACCTTACTATATA+TGG - chr1.1:63735556-63735575 MS.gene005434:intron 30.0%
GAAGCAATTTGATTCTCTTA+AGG - chr1.1:63734072-63734091 MS.gene005434:intron 30.0%
GAATGATCAACTAACAATCA+AGG + chr1.1:63734974-63734993 None:intergenic 30.0%
GATTTAGTTATGATCTCACA+TGG - chr1.1:63734899-63734918 MS.gene005434:intron 30.0%
GTTGCAAACCTTTATATTAC+AGG + chr1.1:63735462-63735481 None:intergenic 30.0%
TGCAAACACCATATATAGTA+AGG + chr1.1:63735567-63735586 None:intergenic 30.0%
! AGAAGACTTTTCTTTCACTT+TGG - chr1.1:63734532-63734551 MS.gene005434:intron 30.0%
! AGCTACAAACTCTAAAGAAA+AGG - chr1.1:63735586-63735605 MS.gene005434:intron 30.0%
! GCTACAAACTCTAAAGAAAA+GGG - chr1.1:63735587-63735606 MS.gene005434:intron 30.0%
! TGTTTCGAGCTTTTATATTG+CGG - chr1.1:63735223-63735242 MS.gene005434:CDS 30.0%
! TTGATTAATTTGGATCTTGG+TGG - chr1.1:63734317-63734336 MS.gene005434:intron 30.0%
!! AATCACAATTTTGACCACAT+CGG + chr1.1:63733492-63733511 None:intergenic 30.0%
!! TTGTCTTTTTCATAGCAACA+TGG + chr1.1:63735087-63735106 None:intergenic 30.0%
!! TTGTTTGTTATTGTAGGTAG+TGG - chr1.1:63733701-63733720 MS.gene005434:intron 30.0%
AAATGGGTGAAAAGAAGAAG+AGG - chr1.1:63733864-63733883 MS.gene005434:intron 35.0%
AACCATATAGCTACTTGTCT+AGG + chr1.1:63733992-63734011 None:intergenic 35.0%
AACCTAGACAAGTAGCTATA+TGG - chr1.1:63733987-63734006 MS.gene005434:intron 35.0%
AAGTGTGATGAATTAGTGCA+TGG - chr1.1:63733803-63733822 MS.gene005434:intron 35.0%
AATGCAATTGGCTAAAGCTT+TGG - chr1.1:63733958-63733977 MS.gene005434:intron 35.0%
ACCTGAGAGAAAAATGCAAT+TGG - chr1.1:63733946-63733965 MS.gene005434:intron 35.0%
AGAGAAGAGAGAAGATATTG+TGG + chr1.1:63733585-63733604 None:intergenic 35.0%
AGATCAGATCTTCAAGATGA+AGG - chr1.1:63735765-63735784 MS.gene005434:CDS 35.0%
ATGCAATTGGCTAAAGCTTT+GGG - chr1.1:63733959-63733978 MS.gene005434:intron 35.0%
CACATTCATTATTGGAGACA+AGG + chr1.1:63734706-63734725 None:intergenic 35.0%
CTTGTAGGCTTAAGTGAATT+TGG + chr1.1:63735717-63735736 None:intergenic 35.0%
GAAAAAAAGTTAGACCGATG+TGG - chr1.1:63733475-63733494 MS.gene005434:CDS 35.0%
GATCAATTATCAGACGAAGA+AGG - chr1.1:63733833-63733852 MS.gene005434:intron 35.0%
TAACAGCTCAGATATGAATC+TGG - chr1.1:63735677-63735696 MS.gene005434:intron 35.0%
TCAAATCGAGGTCAAAATTG+TGG + chr1.1:63735489-63735508 None:intergenic 35.0%
TTAGTACATAGTTGTCCACA+TGG - chr1.1:63735124-63735143 MS.gene005434:CDS 35.0%
! TGAAAGATGAAAGTGTGAGA+AGG + chr1.1:63733290-63733309 None:intergenic 35.0%
!! AAAAGGGACTGCTTTGAAAA+TGG - chr1.1:63735603-63735622 MS.gene005434:intron 35.0%
!! ATTGTAGGTAGTGGAAGTAA+TGG - chr1.1:63733710-63733729 MS.gene005434:intron 35.0%
!! CTTAAGTGAATTTGGTGTTC+TGG + chr1.1:63735709-63735728 None:intergenic 35.0%
!!! AAGAGATCCATGTCATTTTC+AGG - chr1.1:63733752-63733771 MS.gene005434:intron 35.0%
!!! CTTGAGAAGAGTTTTGAGAT+TGG - chr1.1:63733911-63733930 MS.gene005434:intron 35.0%
!!! GGTGCCGTAAATTTTTTTAG+AGG + chr1.1:63735302-63735321 None:intergenic 35.0%
AATGAAGGTTCTTGGAGCAA+TGG - chr1.1:63735648-63735667 MS.gene005434:intron 40.0%
CACTTTCATATGCTTCCATG+TGG + chr1.1:63735142-63735161 None:intergenic 40.0%
CTCTATGCCTGAAAATGACA+TGG + chr1.1:63733762-63733781 None:intergenic 40.0%
GAGAGAAGATATTGTGGTCA+TGG + chr1.1:63733579-63733598 None:intergenic 40.0%
GGTTCCAAAATAGAAGAGCA+AGG - chr1.1:63734008-63734027 MS.gene005434:intron 40.0%
TCCAAAATAGAAGAGCAAGG+TGG - chr1.1:63734011-63734030 MS.gene005434:intron 40.0%
TGATTAAAGCCTTCAATGGC+AGG + chr1.1:63734662-63734681 None:intergenic 40.0%
TGCAATTGGCTAAAGCTTTG+GGG - chr1.1:63733960-63733979 MS.gene005434:intron 40.0%
TTGATGAGCAGCAGAGTTTA+TGG - chr1.1:63735811-63735830 MS.gene005434:CDS 40.0%
TTGTCCATAACCGTAGTTGT+GGG + chr1.1:63735323-63735342 None:intergenic 40.0%
! AAGATGAAAGTGTGAGAAGG+TGG + chr1.1:63733287-63733306 None:intergenic 40.0%
! ACAAGTTTTCCTGCCATTGA+AGG - chr1.1:63734650-63734669 MS.gene005434:intron 40.0%
! CACATGGAAGCATATGAAAG+TGG - chr1.1:63735140-63735159 MS.gene005434:CDS 40.0%
! GCCAATTGCATTTTTCTCTC+AGG + chr1.1:63733950-63733969 None:intergenic 40.0%
! GGCTGATAATGACACACTTA+AGG - chr1.1:63734093-63734112 MS.gene005434:intron 40.0%
! TCCACCTTGCTCTTCTATTT+TGG + chr1.1:63734015-63734034 None:intergenic 40.0%
!! AAAGTGTTGATGAGGTGGAA+AGG + chr1.1:63733378-63733397 None:intergenic 40.0%
!! CTGATCTTGAAGAGCATTGA+AGG + chr1.1:63735752-63735771 None:intergenic 40.0%
!! GAAGAAGGGTACTCACAAAT+GGG - chr1.1:63733848-63733867 MS.gene005434:intron 40.0%
!! GTGAATTTGGTGTTCTGGAA+AGG + chr1.1:63735704-63735723 None:intergenic 40.0%
!! TGACCTTGAAAGTGTTGATG+AGG + chr1.1:63733386-63733405 None:intergenic 40.0%
ATGAGGTGGAAAGGAAGGAT+AGG + chr1.1:63733369-63733388 None:intergenic 45.0%
ATTTACGGCACCCACAACTA+CGG - chr1.1:63735310-63735329 MS.gene005434:CDS 45.0%
CCACCTCATCAACACTTTCA+AGG - chr1.1:63733380-63733399 MS.gene005434:CDS 45.0%
GCAAATGCGAGTAATGTAGC+CGG - chr1.1:63735256-63735275 MS.gene005434:CDS 45.0%
GTTGTCCATAACCGTAGTTG+TGG + chr1.1:63735324-63735343 None:intergenic 45.0%
TGTTGCTGATGATCAGTCCA+AGG + chr1.1:63735837-63735856 None:intergenic 45.0%
! TGTTGATGAGGTGGAAAGGA+AGG + chr1.1:63733374-63733393 None:intergenic 45.0%
!! AGTTCTGGATTGTGACACAC+TGG + chr1.1:63735007-63735026 None:intergenic 45.0%
!! CCTTGAAAGTGTTGATGAGG+TGG + chr1.1:63733383-63733402 None:intergenic 45.0%
!! CGAAGAAGGGTACTCACAAA+TGG - chr1.1:63733847-63733866 MS.gene005434:intron 45.0%
!! GTAGGTAGTGGAAGTAATGG+TGG - chr1.1:63733713-63733732 MS.gene005434:intron 45.0%
!!! ATATATATTTTTATATTTGA+AGG - chr1.1:63734734-63734753 MS.gene005434:intron 5.0%
AGCAGCAGAGTTTATGGCCT+TGG - chr1.1:63735817-63735836 MS.gene005434:CDS 50.0%
AGGAGCTGTGTCATGCTTGT+AGG + chr1.1:63735732-63735751 None:intergenic 50.0%
CTCTCGTAGCATCGCAATTC+CGG + chr1.1:63735278-63735297 None:intergenic 50.0%
GGCACCCACAACTACGGTTA+TGG - chr1.1:63735316-63735335 MS.gene005434:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 63733275 63735869 63733275 ID=MS.gene005434
chr1.1 mRNA 63733275 63735869 63733275 ID=MS.gene005434.t1;Parent=MS.gene005434
chr1.1 exon 63735743 63735869 63735743 ID=MS.gene005434.t1.exon1;Parent=MS.gene005434.t1
chr1.1 CDS 63735743 63735869 63735743 ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1
chr1.1 exon 63735003 63735427 63735003 ID=MS.gene005434.t1.exon2;Parent=MS.gene005434.t1
chr1.1 CDS 63735003 63735427 63735003 ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1
chr1.1 exon 63733275 63733556 63733275 ID=MS.gene005434.t1.exon3;Parent=MS.gene005434.t1
chr1.1 CDS 63733275 63733556 63733275 ID=cds.MS.gene005434.t1;Parent=MS.gene005434.t1
Gene Sequence

>MS.gene005434

ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATGAAAACATACTTTCATCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTCACACTCAAACTTTTTCTTGTGTGTGTTAAATTGCATCTGTAGCCGAAGTTACGTTGCAAACTTTTATATTGAAAAAAAGTTAGACCGATGTGGTCAAAATTGTGATTGTAATACCGTTGCAAAAACATCAATATTTGTCGTTATATTATCGTTGCAGATTGCAATTTAAAACCATGACCACAATATCTTCTCTCTTCTCTATTTCTAATGAAAAAATGTTCCAAAAATAAACTTTTTTAAAAGAAAAATCTTTATAATCAGTGGTTATTTTTCATTAAAATTTTTACATATGTTTTTTGTTTGTTATTGTAGGTAGTGGAAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATAAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGACGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAGAGAAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGACACACTTAAGGCTCAAAACAACAAATTACATGCAGAGGTAATTACTAATTAATACTAATGATAGTACTAATCATATATATATATATATATATATATATATATATATATATAGTTAGTGTAATTAAATCTTTAAAATTTCAATACTCTACCTCTAAAATTTCTTTCTTGATTAATTATACTATTGAGTGATTATTTTTGAACAAAAGAAGACTTTGATTAATTTGGATCTTGGTGGTAAATTAATTAACTGGGTCATTAGTCATTTTCAATAAAATGGAGATGTCTTAATCTTGATTCAAAATATAATCTTAAAATAGTTCAAATTTTTTCAATGTTCATGAACAAAAATAGAGTGTGACTTGACTCCAATATCCAATTTTTTATTCTTGAAGATGATTAATAAATTGTATTTTTTGGAAGTAAAGGAAGAAGACTTTTCTTTCACTTTGGTTGTTAATTTTTTTTCCTCATAGTTTTTCATATTTTCCCCCTTGATATAGACTTTGATTTGATGTGTGTTTGTGAATGGATTACATCAATGCAGAACAAGTTTTCCTGCCATTGAAGGCTTTAATCATTTAGTCTTTTCAATACTTATCCTTGTCTCCAATAATGAATGTGTAATTAACATATATATTTTTATATTTGAAGGAAAAAAATACCAAACTTTTATGTTATTTTGATTTTTTTTAATGCAAAATTGTTTATTTATTTTCACTTCTTTAATTTGAATTAGTTATAAGAGGAATTTTTTTTTTCTTCTAGCCTATTTACTAAGAAAGCTCAATTTAATTGATTTAGTTATGATCTCACATGGTCTTTATGCACTTTTTAAAGTAATTGATTTTGTTATTAACTTTCTGCTACCTTGATTGTTAGTTGATCATTCATAGGACTAGCCAGTGTGTCACAATCCAGAACTGCAAATTTAATAGTGATATGTTTGTTTTTCTATTCAATACTGTTTTATATAACTATTCCATGTTGCTATGAAAAAGACAAGGTAGCTTTTGATCTGATTAGTACATAGTTGTCCACATGGAAGCATATGAAAGTGGAATCAAAAGCTTTATTCATACCATGATTTTAAATTGTGATTGCAGTCGCAGTTTTAATTATGTTTCGAGCTTTTATATTGCGGTAAAATGTTGGCAAATGCGAGTAATGTAGCCGGAATTGCGATGCTACGAGAGACCTCTAAAAAAATTTACGGCACCCACAACTACGGTTATGGACAACAATTACAGTTGTGATGCTATTGCAGATATTTCTAAAATCTTTATATTGCGTCCGCAATATAAATGATTTTAAGATTTTTGCAACGGCATCTCAACTGCAATTGCGACTGTATTTTCCTGTAATATAAAGGTTTGCAACGTATCCACAATTTTGACCTCGATTTGAAACCATATACATACAATCATTTTTTTTTATAATGTGATACATACATTCATGAAGACCTTACTATATATGGTGTTTGCAGCTACAAACTCTAAAGAAAAGGGACTGCTTTGAAAATGGAACAATTACCCTCAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTGGACCTTTCCAGAACACCAAATTCACTTAAGCCTACAAGCATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAGGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCAATTCCGTTAA
Protein sequence

>MS.gene005434.t1

MAFPPSHTFIFQTHEDHHHENILSSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIESNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNNKLHAELQTLKKRDCFENGTITLKKENEGSWSNGSDNSSDMNLDLSRTPNSLKPTSMTQLLQCSSRSDLQDEGFCNMFNNIDEQQSLWPWTDHQQHQFR