Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005475.t1 | XP_003591325.1 | 97.5 | 1003 | 25 | 0 | 1 | 1003 | 1 | 1003 | 0.00E+00 | 1925.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005475.t1 | Q9SMX9 | 55.3 | 1006 | 310 | 27 | 6 | 1003 | 8 | 881 | 2.4e-280 | 966.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005475.t1 | G7IBS5 | 97.5 | 1003 | 25 | 0 | 1 | 1003 | 1 | 1003 | 0.0e+00 | 1925.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene005475.t1 | TF | SBP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005475.t1 | MTR_1g086250 | 97.707 | 1003 | 23 | 0 | 1 | 1003 | 1 | 1003 | 0.0 | 2045 |
MS.gene005475.t1 | MTR_1g086250 | 98.148 | 810 | 15 | 0 | 194 | 1003 | 2 | 811 | 0.0 | 1660 |
MS.gene005475.t1 | MTR_7g110320 | 75.347 | 1010 | 225 | 10 | 8 | 1003 | 2 | 1001 | 0.0 | 1499 |
MS.gene005475.t1 | MTR_7g110320 | 75.058 | 866 | 192 | 10 | 8 | 859 | 2 | 857 | 0.0 | 1261 |
MS.gene005475.t1 | MTR_2g046550 | 49.226 | 1034 | 471 | 19 | 7 | 1002 | 7 | 1024 | 0.0 | 908 |
MS.gene005475.t1 | MTR_2g046550 | 47.601 | 792 | 380 | 12 | 243 | 1002 | 1 | 789 | 0.0 | 671 |
MS.gene005475.t1 | MTR_1g035010 | 33.165 | 594 | 363 | 10 | 417 | 1002 | 435 | 1002 | 4.12e-87 | 301 |
MS.gene005475.t1 | MTR_1g035010 | 50.303 | 165 | 73 | 4 | 115 | 273 | 74 | 235 | 4.58e-38 | 154 |
MS.gene005475.t1 | MTR_2g078770 | 62.376 | 101 | 38 | 0 | 132 | 232 | 43 | 143 | 8.27e-34 | 128 |
MS.gene005475.t1 | MTR_8g463140 | 67.033 | 91 | 30 | 0 | 146 | 236 | 64 | 154 | 3.67e-33 | 126 |
MS.gene005475.t1 | MTR_8g005960 | 41.837 | 196 | 91 | 6 | 46 | 221 | 69 | 261 | 1.31e-32 | 130 |
MS.gene005475.t1 | MTR_8g096780 | 58.511 | 94 | 39 | 0 | 133 | 226 | 85 | 178 | 3.23e-31 | 127 |
MS.gene005475.t1 | MTR_4g088555 | 62.921 | 89 | 33 | 0 | 133 | 221 | 49 | 137 | 9.79e-31 | 118 |
MS.gene005475.t1 | MTR_5g046670 | 61.798 | 89 | 34 | 0 | 132 | 220 | 229 | 317 | 2.95e-30 | 126 |
MS.gene005475.t1 | MTR_2g014200 | 63.043 | 92 | 33 | 1 | 133 | 224 | 51 | 141 | 3.13e-30 | 117 |
MS.gene005475.t1 | MTR_2g461920 | 64.773 | 88 | 31 | 0 | 133 | 220 | 157 | 244 | 3.17e-30 | 127 |
MS.gene005475.t1 | MTR_7g444860 | 58.511 | 94 | 39 | 0 | 137 | 230 | 139 | 232 | 5.02e-30 | 122 |
MS.gene005475.t1 | MTR_4g109770 | 64.773 | 88 | 28 | 1 | 133 | 220 | 112 | 196 | 4.73e-29 | 122 |
MS.gene005475.t1 | MTR_2g020620 | 26.087 | 345 | 222 | 9 | 430 | 751 | 247 | 581 | 1.11e-28 | 124 |
MS.gene005475.t1 | MTR_2g020620 | 52.308 | 65 | 31 | 0 | 156 | 220 | 99 | 163 | 2.63e-16 | 84.3 |
MS.gene005475.t1 | MTR_3g085180 | 56.842 | 95 | 41 | 0 | 132 | 226 | 150 | 244 | 1.13e-28 | 120 |
MS.gene005475.t1 | MTR_2g020620 | 26.087 | 345 | 222 | 9 | 430 | 751 | 143 | 477 | 2.01e-28 | 122 |
MS.gene005475.t1 | MTR_3g099080 | 50.435 | 115 | 54 | 2 | 133 | 244 | 83 | 197 | 3.09e-28 | 118 |
MS.gene005475.t1 | MTR_7g028740 | 61.364 | 88 | 33 | 1 | 133 | 220 | 64 | 150 | 3.92e-28 | 117 |
MS.gene005475.t1 | MTR_1g053715 | 65.432 | 81 | 28 | 0 | 140 | 220 | 67 | 147 | 5.94e-28 | 117 |
MS.gene005475.t1 | MTR_2g020620 | 26.168 | 321 | 208 | 8 | 450 | 751 | 3 | 313 | 8.93e-28 | 119 |
MS.gene005475.t1 | MTR_7g092930 | 68.919 | 74 | 23 | 0 | 147 | 220 | 68 | 141 | 2.08e-27 | 115 |
MS.gene005475.t1 | MTR_8g080690 | 54.255 | 94 | 43 | 0 | 132 | 225 | 136 | 229 | 9.21e-26 | 110 |
MS.gene005475.t1 | MTR_8g080680 | 56.250 | 80 | 35 | 0 | 147 | 226 | 132 | 211 | 3.38e-23 | 103 |
MS.gene005475.t1 | MTR_8g080670 | 58.108 | 74 | 31 | 0 | 146 | 219 | 161 | 234 | 2.86e-21 | 98.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005475.t1 | AT2G47070 | 56.604 | 1007 | 295 | 29 | 6 | 1003 | 8 | 881 | 0.0 | 997 |
MS.gene005475.t1 | AT3G60030 | 56.293 | 1009 | 328 | 28 | 16 | 1003 | 11 | 927 | 0.0 | 991 |
MS.gene005475.t1 | AT2G47070 | 58.264 | 841 | 254 | 21 | 171 | 1003 | 1 | 752 | 0.0 | 890 |
MS.gene005475.t1 | AT1G20980 | 32.590 | 583 | 357 | 15 | 427 | 1002 | 481 | 1034 | 3.53e-79 | 280 |
MS.gene005475.t1 | AT1G20980 | 41.803 | 244 | 93 | 7 | 26 | 260 | 38 | 241 | 1.24e-39 | 160 |
MS.gene005475.t1 | AT1G76580 | 30.690 | 580 | 356 | 12 | 429 | 1002 | 480 | 1019 | 1.93e-76 | 272 |
MS.gene005475.t1 | AT1G76580 | 35.273 | 275 | 103 | 7 | 30 | 297 | 40 | 246 | 1.80e-35 | 146 |
MS.gene005475.t1 | AT1G76580 | 39.655 | 232 | 81 | 7 | 30 | 252 | 40 | 221 | 3.48e-36 | 147 |
MS.gene005475.t1 | AT1G76580 | 36.364 | 220 | 132 | 4 | 429 | 646 | 480 | 693 | 6.94e-32 | 134 |
MS.gene005475.t1 | AT1G76580 | 39.655 | 232 | 81 | 7 | 30 | 252 | 40 | 221 | 3.57e-36 | 147 |
MS.gene005475.t1 | AT1G76580 | 36.239 | 218 | 131 | 4 | 429 | 644 | 480 | 691 | 3.81e-31 | 131 |
MS.gene005475.t1 | AT2G33810 | 61.798 | 89 | 34 | 0 | 134 | 222 | 41 | 129 | 3.18e-32 | 122 |
MS.gene005475.t1 | AT1G69170 | 65.909 | 88 | 30 | 0 | 133 | 220 | 110 | 197 | 6.59e-32 | 129 |
MS.gene005475.t1 | AT1G02065 | 69.620 | 79 | 24 | 0 | 147 | 225 | 188 | 266 | 3.05e-31 | 126 |
MS.gene005475.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 6.45e-31 | 120 |
MS.gene005475.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 6.45e-31 | 120 |
MS.gene005475.t1 | AT1G53160 | 60.606 | 99 | 33 | 2 | 134 | 226 | 35 | 133 | 8.21e-31 | 119 |
MS.gene005475.t1 | AT3G15270 | 58.163 | 98 | 38 | 1 | 136 | 230 | 49 | 146 | 3.20e-30 | 118 |
MS.gene005475.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.43e-29 | 121 |
MS.gene005475.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.43e-29 | 121 |
MS.gene005475.t1 | AT5G43270 | 56.701 | 97 | 42 | 0 | 147 | 243 | 169 | 265 | 6.43e-29 | 121 |
MS.gene005475.t1 | AT5G50670 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene005475.t1 | AT5G50670 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene005475.t1 | AT5G50570 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene005475.t1 | AT5G50570 | 55.319 | 94 | 40 | 1 | 140 | 233 | 94 | 185 | 7.09e-29 | 119 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 4.16e-28 | 117 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27370 | 50.450 | 111 | 51 | 2 | 110 | 220 | 143 | 249 | 5.23e-28 | 118 |
MS.gene005475.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.82e-26 | 113 |
MS.gene005475.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.82e-26 | 113 |
MS.gene005475.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.82e-26 | 113 |
MS.gene005475.t1 | AT1G27360 | 50.450 | 111 | 50 | 2 | 110 | 220 | 143 | 248 | 1.82e-26 | 113 |
MS.gene005475.t1 | AT3G57920 | 58.242 | 91 | 38 | 0 | 130 | 220 | 42 | 132 | 5.37e-26 | 111 |
MS.gene005475.t1 | AT5G18830 | 27.619 | 315 | 193 | 7 | 382 | 672 | 239 | 542 | 5.51e-26 | 115 |
MS.gene005475.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.34e-22 | 103 |
MS.gene005475.t1 | AT5G18830 | 27.302 | 315 | 194 | 7 | 382 | 672 | 239 | 542 | 6.75e-26 | 115 |
MS.gene005475.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.68e-22 | 103 |
MS.gene005475.t1 | AT5G18830 | 27.302 | 315 | 194 | 7 | 382 | 672 | 239 | 542 | 7.41e-26 | 115 |
MS.gene005475.t1 | AT5G18830 | 54.545 | 88 | 39 | 1 | 133 | 220 | 125 | 211 | 2.80e-22 | 103 |
MS.gene005475.t1 | AT2G42200 | 66.216 | 74 | 25 | 0 | 147 | 220 | 74 | 147 | 1.21e-25 | 110 |
MS.gene005475.t1 | AT1G02065 | 68.750 | 48 | 15 | 0 | 147 | 194 | 188 | 235 | 6.71e-16 | 79.0 |
Find 244 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCTCTTGTTCTCGTAAA+AGG | 0.174087 | 1.1:-64111072 | None:intergenic |
TGCAGTTCTACAAGAAATTT+TGG | 0.179030 | 1.1:-64114786 | None:intergenic |
GCAACAATTATAGCAAAATT+TGG | 0.200968 | 1.1:+64112766 | MS.gene005475:CDS |
TTTCCAGTCCCTTCAATATC+TGG | 0.226153 | 1.1:-64113588 | None:intergenic |
ACCAACAAGCGCCTTGTCTT+TGG | 0.258264 | 1.1:-64113961 | None:intergenic |
AGAACGGTTCACATGGCTTA+TGG | 0.294581 | 1.1:+64113728 | MS.gene005475:CDS |
GAAATCCATAGCTTGACTTT+TGG | 0.299906 | 1.1:-64113619 | None:intergenic |
GGGAATGGAATTTGAATGAT+TGG | 0.316466 | 1.1:+64107728 | MS.gene005475:CDS |
TATGGATTTCATTCATGAAA+TGG | 0.320879 | 1.1:+64113632 | MS.gene005475:CDS |
TTTATTCTCCAATGGTTCTC+AGG | 0.328039 | 1.1:+64111141 | MS.gene005475:CDS |
TTTGATGAAACTGTTAATAA+AGG | 0.328176 | 1.1:+64113807 | MS.gene005475:CDS |
ACAGAAGCCAATTGAAATAT+AGG | 0.336809 | 1.1:+64113667 | MS.gene005475:CDS |
ACCTTGTGGCAGGGCGCATC+AGG | 0.339254 | 1.1:-64112851 | None:intergenic |
GCACTTAGCTTAAATCTTGC+AGG | 0.340035 | 1.1:+64107985 | MS.gene005475:CDS |
CCAACAAGCGCCTTGTCTTT+GGG | 0.348507 | 1.1:-64113960 | None:intergenic |
TCATTTGTTGGACTTCCATT+AGG | 0.355984 | 1.1:-64109626 | None:intergenic |
AGTTTGTGAGATGCATTCTA+AGG | 0.361547 | 1.1:+64108143 | MS.gene005475:CDS |
CCCACTCCGGTCTGGGATCC+CGG | 0.362139 | 1.1:+64107831 | MS.gene005475:CDS |
CTCGGCCTGACGCAGATAAA+TGG | 0.364403 | 1.1:-64112377 | None:intergenic |
ATCTATTAACTCATCTTCTA+AGG | 0.366559 | 1.1:+64111002 | MS.gene005475:CDS |
AGCCATGTGAACCGTTCTAA+TGG | 0.369029 | 1.1:-64113723 | None:intergenic |
ATTGCTCTCTGTCATATTGA+TGG | 0.370978 | 1.1:-64114672 | None:intergenic |
AGATCTTGAGAAACGGAATA+AGG | 0.371121 | 1.1:+64107900 | MS.gene005475:CDS |
CAGACCTGCAATGCTCTCTA+TGG | 0.376267 | 1.1:+64114829 | MS.gene005475:CDS |
TAACCATCCTATATTTCAAT+TGG | 0.385181 | 1.1:-64113674 | None:intergenic |
CTAAGTGAATGTAAGTATAA+TGG | 0.386411 | 1.1:-64114595 | None:intergenic |
TTTGATGCCGGTACAGCAAT+TGG | 0.388018 | 1.1:-64112798 | None:intergenic |
GAGAAATAGCAAACAGTTAG+TGG | 0.388325 | 1.1:+64113890 | MS.gene005475:CDS |
TTCCAGTTTGATTAAGCTGC+TGG | 0.388701 | 1.1:+64112535 | MS.gene005475:CDS |
AGGTTAATGTGTGCTTTAGA+AGG | 0.390854 | 1.1:+64113028 | MS.gene005475:intron |
CGGAACATGTATAGAACTTC+GGG | 0.394622 | 1.1:-64114902 | None:intergenic |
ACCTTTCAGATGGGAATCAT+TGG | 0.397557 | 1.1:+64114925 | MS.gene005475:CDS |
AATCAAGAAGCTGTTCCTAA+TGG | 0.397811 | 1.1:+64109611 | MS.gene005475:CDS |
GCTTCTCCGCTAGAACTAGA+AGG | 0.400011 | 1.1:-64111529 | None:intergenic |
CTAGTCTGATCATCATTTGT+TGG | 0.400423 | 1.1:-64109638 | None:intergenic |
AGTACAAGAGGAAATTCATT+TGG | 0.402660 | 1.1:-64112184 | None:intergenic |
CAGGTACAGAACATGAAAAT+TGG | 0.403924 | 1.1:-64113126 | None:intergenic |
ATCCAGCAGCTTAATCAAAC+TGG | 0.406521 | 1.1:-64112537 | None:intergenic |
GCCACCATAGAGAGCATTGC+AGG | 0.412655 | 1.1:-64114833 | None:intergenic |
AGATGCATTCTAAGGCTAGT+AGG | 0.412881 | 1.1:+64108151 | MS.gene005475:CDS |
GAATCAAATGCAACAAGAAA+TGG | 0.413695 | 1.1:+64111204 | MS.gene005475:CDS |
ATGTCTCAGATGATACGTTT+TGG | 0.415679 | 1.1:+64112558 | MS.gene005475:CDS |
CTCTTGCTTCCGAGTAAGCC+GGG | 0.419245 | 1.1:-64111300 | None:intergenic |
TGCTTTAGAAGGAAAATATC+TGG | 0.420117 | 1.1:+64113039 | MS.gene005475:CDS |
TCATTCACTAGCTTAGAGAT+TGG | 0.421089 | 1.1:+64114716 | MS.gene005475:CDS |
ATGGATTTCATTCATGAAAT+GGG | 0.424476 | 1.1:+64113633 | MS.gene005475:CDS |
TTCATCTGATTTGAGTGGGA+TGG | 0.429528 | 1.1:+64107693 | MS.gene005475:CDS |
CAAGAGAATTTGTTGAGAGA+AGG | 0.430841 | 1.1:+64111085 | MS.gene005475:CDS |
TTTGACCATTTATCTGCGTC+AGG | 0.436128 | 1.1:+64112372 | MS.gene005475:CDS |
CCTGATGCTGTTGGTCCTGC+CGG | 0.436534 | 1.1:+64114011 | MS.gene005475:CDS |
AAGAGAATTTGTTGAGAGAA+GGG | 0.437952 | 1.1:+64111086 | MS.gene005475:CDS |
AGATGGTTCCGAGGATGTAC+TGG | 0.438143 | 1.1:+64114064 | MS.gene005475:CDS |
CGCTAGAACTAGAAGGGGAC+TGG | 0.439772 | 1.1:-64111522 | None:intergenic |
CGGTCTGGGATCCCGGTGGT+TGG | 0.446088 | 1.1:+64107838 | MS.gene005475:CDS |
GATTTGCTAGGTTGAGGACC+AGG | 0.448001 | 1.1:+64113467 | MS.gene005475:intron |
CCCAAAGACAAGGCGCTTGT+TGG | 0.448364 | 1.1:+64113960 | MS.gene005475:CDS |
AGCTGTCGAAGACGCTTGGC+TGG | 0.450145 | 1.1:+64109563 | MS.gene005475:CDS |
TCAATTGGCAGATTCTAGAT+TGG | 0.452129 | 1.1:+64112296 | MS.gene005475:intron |
AGATGGGAATCATTGGAGTT+CGG | 0.452671 | 1.1:+64114932 | MS.gene005475:CDS |
TTCGAATCGAGCTGTCTGTC+AGG | 0.452984 | 1.1:+64108065 | MS.gene005475:CDS |
TCTGAATTTCCACTTGTTTG+AGG | 0.453259 | 1.1:-64111487 | None:intergenic |
GTGGGATGGGGAAGAGGTCA+AGG | 0.453462 | 1.1:+64107707 | MS.gene005475:CDS |
TATAGCTAGCCGTGTGAATC+CGG | 0.453788 | 1.1:+64107771 | MS.gene005475:CDS |
CGCAAACTCTCCGCCTGCAC+CGG | 0.454733 | 1.1:-64107790 | None:intergenic |
CATTTATCTGCGTCAGGCCG+AGG | 0.455554 | 1.1:+64112378 | MS.gene005475:CDS |
GTCAGATCAGCCTACAGATC+AGG | 0.456789 | 1.1:+64110979 | MS.gene005475:CDS |
TCTGGGATCCCGGTGGTTGG+AGG | 0.462646 | 1.1:+64107841 | MS.gene005475:CDS |
TTTCCGTCCCTTTCCACAGC+CGG | 0.462810 | 1.1:-64108018 | None:intergenic |
TTATTCTCCAATGGTTCTCA+GGG | 0.464671 | 1.1:+64111142 | MS.gene005475:CDS |
TTAAATTAATTATAGCTGAC+AGG | 0.464842 | 1.1:+64110957 | MS.gene005475:intron |
AGGATGGTTAACTTGAACTC+TGG | 0.466960 | 1.1:+64113687 | MS.gene005475:CDS |
ATAAGGAAGGGGATAGGAAA+AGG | 0.467611 | 1.1:+64107917 | MS.gene005475:CDS |
TCTCTTGCTTCCGAGTAAGC+CGG | 0.470159 | 1.1:-64111301 | None:intergenic |
CCGGCAGGACCAACAGCATC+AGG | 0.471054 | 1.1:-64114011 | None:intergenic |
TTGCTCTCTGTCATATTGAT+GGG | 0.475943 | 1.1:-64114671 | None:intergenic |
TTGATTACAGGTGGGAATTG+AGG | 0.477112 | 1.1:+64114511 | MS.gene005475:intron |
TCCTCTTGTACTTAGAGCAC+AGG | 0.478174 | 1.1:+64112195 | MS.gene005475:CDS |
TGGGGAAGAGGTCAAGGGAA+TGG | 0.478218 | 1.1:+64107713 | MS.gene005475:CDS |
TCATCTGATTTGAGTGGGAT+GGG | 0.479593 | 1.1:+64107694 | MS.gene005475:CDS |
AACAGAGATTACCTTGTGGC+AGG | 0.479919 | 1.1:-64112861 | None:intergenic |
TGCGTCAGGCCGAGGCTGTG+TGG | 0.480436 | 1.1:+64112386 | MS.gene005475:CDS |
AACTGCAGTAGGAAGGTCTA+TGG | 0.480847 | 1.1:+64114802 | MS.gene005475:CDS |
TCCTCTTCTGCCACTATGAA+AGG | 0.481801 | 1.1:-64113510 | None:intergenic |
CATATAGCAGCGGGAAAAGA+TGG | 0.484670 | 1.1:+64114047 | MS.gene005475:CDS |
TATCAGAGTGCAACATCAAA+TGG | 0.485125 | 1.1:+64112598 | MS.gene005475:CDS |
AAAGACAAGGCGCTTGTTGG+TGG | 0.485410 | 1.1:+64113963 | MS.gene005475:CDS |
AGGACATGTTTCACCGGCTG+TGG | 0.490256 | 1.1:+64108005 | MS.gene005475:CDS |
CTAGCTCTGTTGACTACCCT+TGG | 0.491004 | 1.1:+64111434 | MS.gene005475:CDS |
TGTTTCACCGGCTGTGGAAA+GGG | 0.493285 | 1.1:+64108011 | MS.gene005475:CDS |
TAAGGCTAGTAGGGCTCTTG+TGG | 0.497571 | 1.1:+64108161 | MS.gene005475:CDS |
TGTTAGTCCAATTGCTGTAC+CGG | 0.498218 | 1.1:+64112791 | MS.gene005475:CDS |
GGAATTTGAATGATTGGAGA+TGG | 0.498797 | 1.1:+64107734 | MS.gene005475:CDS |
CACAAAGTTTACAGTTCCCT+CGG | 0.498820 | 1.1:-64114760 | None:intergenic |
GAAAGTGCTTGATACAATGT+AGG | 0.501114 | 1.1:-64113837 | None:intergenic |
GTATCAGCTTTATTCTCCAA+TGG | 0.501723 | 1.1:+64111133 | MS.gene005475:CDS |
ATTTGAGTGGGATGGGGAAG+AGG | 0.502781 | 1.1:+64107701 | MS.gene005475:CDS |
TGGAGACCCCTGAGAACCAT+TGG | 0.509467 | 1.1:-64111149 | None:intergenic |
TAACAGTTTCATCAAAGAGT+AGG | 0.509576 | 1.1:-64113800 | None:intergenic |
TCCTTTCATAGTGGCAGAAG+AGG | 0.510150 | 1.1:+64113509 | MS.gene005475:CDS |
GAGAAGCTGTCGAAGACGCT+TGG | 0.511016 | 1.1:+64109559 | MS.gene005475:CDS |
TATCAAGCACTTTCAGAGAT+GGG | 0.511356 | 1.1:+64113846 | MS.gene005475:CDS |
CTCAATATCAGTAGGACTGT+GGG | 0.513581 | 1.1:-64112323 | None:intergenic |
GTGGTTCATCTGATTTGAGT+GGG | 0.514851 | 1.1:+64107689 | MS.gene005475:CDS |
GGAGCATGAAGAAGACGTAT+TGG | 0.515867 | 1.1:-64107869 | None:intergenic |
AGTTCATCAGATGTATTGTC+AGG | 0.517811 | 1.1:-64113933 | None:intergenic |
TAGCCGTGTGAATCCGGTGC+AGG | 0.517976 | 1.1:+64107777 | MS.gene005475:CDS |
GCGTCAGGCCGAGGCTGTGT+GGG | 0.518427 | 1.1:+64112387 | MS.gene005475:CDS |
TAAAGCCAAAAGTCAAGCTA+TGG | 0.519399 | 1.1:+64113614 | MS.gene005475:CDS |
TATATGAAGTGGTGTCAAAC+CGG | 0.519627 | 1.1:-64114030 | None:intergenic |
TCACCACTGCACACCAATCA+TGG | 0.519744 | 1.1:-64113764 | None:intergenic |
TAGTTCTAGCGGAGAAGCCC+AGG | 0.520957 | 1.1:+64111534 | MS.gene005475:CDS |
ATGTTTCACCGGCTGTGGAA+AGG | 0.521156 | 1.1:+64108010 | MS.gene005475:CDS |
GAAACTGATCCAGATATTGA+AGG | 0.522834 | 1.1:+64113579 | MS.gene005475:CDS |
TTGGAGTTCGGAACAAGCTA+AGG | 0.522976 | 1.1:+64114944 | MS.gene005475:CDS |
TTTCTCAAGATCTCCTTCCT+CGG | 0.523046 | 1.1:-64107890 | None:intergenic |
GTATCAAGCACTTTCAGAGA+TGG | 0.523556 | 1.1:+64113845 | MS.gene005475:CDS |
AACGGAATAAGGAAGGGGAT+AGG | 0.524602 | 1.1:+64107911 | MS.gene005475:CDS |
TCGGAACATGTATAGAACTT+CGG | 0.525195 | 1.1:-64114903 | None:intergenic |
CAACCACCGGGATCCCAGAC+CGG | 0.527167 | 1.1:-64107837 | None:intergenic |
AAGAATGCCCGTGACAGTAC+AGG | 0.527708 | 1.1:+64114539 | MS.gene005475:CDS |
AGAGAATTTGTTGAGAGAAG+GGG | 0.527845 | 1.1:+64111087 | MS.gene005475:CDS |
GTTTCACTTGATTCTAGTAG+AGG | 0.528154 | 1.1:-64113561 | None:intergenic |
ATTTCTTGTAGAACTGCAGT+AGG | 0.528560 | 1.1:+64114791 | MS.gene005475:CDS |
GAAAAGGAGAGTTATTGTGC+TGG | 0.529228 | 1.1:+64107933 | MS.gene005475:CDS |
GTGTGGAGCCTGTACTGTCA+CGG | 0.530352 | 1.1:-64114547 | None:intergenic |
ACATGTTCCGACCTTTCAGA+TGG | 0.530501 | 1.1:+64114915 | MS.gene005475:CDS |
CCGGGATCCCAGACCGGAGT+GGG | 0.530624 | 1.1:-64107831 | None:intergenic |
TGATGTTGTGTTATAACAGT+TGG | 0.532386 | 1.1:-64111169 | None:intergenic |
GCTTGGCTGGCCATAACAAA+CGG | 0.533402 | 1.1:+64109576 | MS.gene005475:CDS |
ACCTGTGCTCTAAGTACAAG+AGG | 0.533970 | 1.1:-64112196 | None:intergenic |
ATTTCATTCATGAAATGGGC+TGG | 0.535051 | 1.1:+64113637 | MS.gene005475:CDS |
GTCTTCTTCACAGAGCTGTA+AGG | 0.535241 | 1.1:+64113868 | MS.gene005475:CDS |
GAATTTGAATGATTGGAGAT+GGG | 0.536595 | 1.1:+64107735 | MS.gene005475:CDS |
TTTCCCGCTGCTATATGAAG+TGG | 0.537198 | 1.1:-64114041 | None:intergenic |
GATCCAGATATTGAAGGGAC+TGG | 0.538378 | 1.1:+64113585 | MS.gene005475:CDS |
GTTATTGTGCTGGAAGATGA+TGG | 0.539294 | 1.1:+64107943 | MS.gene005475:CDS |
TGTTCTGTACCTGTGACAAA+TGG | 0.539622 | 1.1:+64113136 | MS.gene005475:CDS |
TAGATCTCTTTCCATTAGAA+CGG | 0.540024 | 1.1:+64113712 | MS.gene005475:CDS |
GGGGTTCTTCAAGAAATTCA+GGG | 0.541114 | 1.1:+64111107 | MS.gene005475:CDS |
GAATTTCCACTTGTTTGAGG+TGG | 0.542056 | 1.1:-64111484 | None:intergenic |
TTGTTTAGACCTGATGCTGT+TGG | 0.542526 | 1.1:+64114002 | MS.gene005475:CDS |
CGTAATCGCGCATAATCCTC+AGG | 0.544188 | 1.1:-64114569 | None:intergenic |
ATATATGTTGACTCAGATGA+TGG | 0.545000 | 1.1:+64111367 | MS.gene005475:CDS |
CATCTGATTTGAGTGGGATG+GGG | 0.546148 | 1.1:+64107695 | MS.gene005475:CDS |
GTAGCAAGATTTGTAGAGAC+GGG | 0.551066 | 1.1:-64111412 | None:intergenic |
TTGGACGAACCTCCAACCAC+CGG | 0.551797 | 1.1:-64107850 | None:intergenic |
CTTCTCCGCTAGAACTAGAA+GGG | 0.552259 | 1.1:-64111528 | None:intergenic |
AGGAAGGAGATCTTGAGAAA+CGG | 0.553331 | 1.1:+64107893 | MS.gene005475:CDS |
AATCCTCTTCCATTTGTCAC+AGG | 0.553594 | 1.1:-64113145 | None:intergenic |
ACACCACTTCATATAGCAGC+GGG | 0.553941 | 1.1:+64114038 | MS.gene005475:CDS |
GATGCATTCTAAGGCTAGTA+GGG | 0.556125 | 1.1:+64108152 | MS.gene005475:CDS |
AATTGAGCTCTCTTTGATGC+CGG | 0.556172 | 1.1:-64112810 | None:intergenic |
GTTAATAGATCCTGATCTGT+AGG | 0.556745 | 1.1:-64110989 | None:intergenic |
TCTTCTTCATGCTCCGAGGA+AGG | 0.558761 | 1.1:+64107877 | MS.gene005475:CDS |
AGTAGCAAGATTTGTAGAGA+CGG | 0.559291 | 1.1:-64111413 | None:intergenic |
TTGAATGATTGGAGATGGGA+TGG | 0.559506 | 1.1:+64107739 | MS.gene005475:CDS |
CTGAAGTTCATCAAGCTCCT+CGG | 0.559955 | 1.1:-64113098 | None:intergenic |
AAGGCTAGTAGGGCTCTTGT+GGG | 0.562216 | 1.1:+64108162 | MS.gene005475:CDS |
ACCTGATGCGCCCTGCCACA+AGG | 0.562538 | 1.1:+64112850 | MS.gene005475:CDS |
ATACTTCAAGAGTTCGATGA+AGG | 0.564195 | 1.1:+64109533 | MS.gene005475:CDS |
CTTGAGAAACGGAATAAGGA+AGG | 0.568690 | 1.1:+64107904 | MS.gene005475:CDS |
CTTGTAGAACTGCAGTAGGA+AGG | 0.568836 | 1.1:+64114795 | MS.gene005475:CDS |
CAGCTTCTTTCCTTTCATAG+TGG | 0.569410 | 1.1:+64113500 | MS.gene005475:CDS |
TGGGATGGGGAAGAGGTCAA+GGG | 0.571074 | 1.1:+64107708 | MS.gene005475:CDS |
TGAGAAACGGAATAAGGAAG+GGG | 0.571995 | 1.1:+64107906 | MS.gene005475:CDS |
TTCCATTAGAACGGTTCACA+TGG | 0.572870 | 1.1:+64113721 | MS.gene005475:CDS |
TGAAGTGGTGTCAAACCGGC+AGG | 0.572947 | 1.1:-64114026 | None:intergenic |
CAGCATTTCAAACAGTCCCC+CGG | 0.574192 | 1.1:+64111282 | MS.gene005475:CDS |
GAGAATTTGTTGAGAGAAGG+GGG | 0.576069 | 1.1:+64111088 | MS.gene005475:CDS |
TCAGGCCGAGGCTGTGTGGG+AGG | 0.577431 | 1.1:+64112390 | MS.gene005475:CDS |
CCGTGTGAATCCGGTGCAGG+CGG | 0.578551 | 1.1:+64107780 | MS.gene005475:CDS |
TGTGGAGCCTGTACTGTCAC+GGG | 0.578816 | 1.1:-64114546 | None:intergenic |
AGAAGCTGCTACTCAAACCC+TGG | 0.580967 | 1.1:-64113485 | None:intergenic |
ATTTGCTAGGTTGAGGACCA+GGG | 0.581329 | 1.1:+64113468 | MS.gene005475:intron |
ATGTAGCTCTCAATATCAGT+AGG | 0.583286 | 1.1:-64112331 | None:intergenic |
TGCAGATCTGAGTAGAGGTA+AGG | 0.583887 | 1.1:+64108101 | MS.gene005475:CDS |
CTATAATTGTTGCTTCGGAA+AGG | 0.584009 | 1.1:-64112756 | None:intergenic |
TCTTGCTTCCGAGTAAGCCG+GGG | 0.584021 | 1.1:-64111299 | None:intergenic |
TCAAGTCCACCTCAAACAAG+TGG | 0.586688 | 1.1:+64111478 | MS.gene005475:CDS |
GGTGGTTCATCTGATTTGAG+TGG | 0.587139 | 1.1:+64107688 | MS.gene005475:CDS |
ACAGAGATTACCTTGTGGCA+GGG | 0.588689 | 1.1:-64112860 | None:intergenic |
CAGAGCATCCAGTACATCCT+CGG | 0.589070 | 1.1:-64114072 | None:intergenic |
ACAAACACAGACCGCTGCTA+TGG | 0.592403 | 1.1:-64114855 | None:intergenic |
CTCTATGGTGGCCATAGCAG+CGG | 0.592561 | 1.1:+64114844 | MS.gene005475:CDS |
GTACCTGTGACAAATGGAAG+AGG | 0.592712 | 1.1:+64113142 | MS.gene005475:CDS |
ATGATTCCCATCTGAAAGGT+CGG | 0.593018 | 1.1:-64114922 | None:intergenic |
AGATATGAGTTGATGATCAG+AGG | 0.595345 | 1.1:-64111248 | None:intergenic |
AAGCCAATTGAAATATAGGA+TGG | 0.596851 | 1.1:+64113671 | MS.gene005475:CDS |
TCCAATGATTCCCATCTGAA+AGG | 0.600424 | 1.1:-64114926 | None:intergenic |
TCTTGCAGGACATGTTTCAC+CGG | 0.602620 | 1.1:+64107999 | MS.gene005475:CDS |
GCTAGAACTAGAAGGGGACT+GGG | 0.602647 | 1.1:-64111521 | None:intergenic |
TGAGAATCTTGTTGTGTCCA+AGG | 0.603103 | 1.1:-64111451 | None:intergenic |
TTGAGAAACGGAATAAGGAA+GGG | 0.603410 | 1.1:+64107905 | MS.gene005475:CDS |
ATTGAGAGCTACATACGCCC+TGG | 0.604603 | 1.1:+64112340 | MS.gene005475:CDS |
AAATGGAAGAGGATTTATTG+AGG | 0.605184 | 1.1:+64113153 | MS.gene005475:CDS |
CATGTTCCGACCTTTCAGAT+GGG | 0.605353 | 1.1:+64114916 | MS.gene005475:CDS |
TGGACGAACCTCCAACCACC+GGG | 0.606579 | 1.1:-64107849 | None:intergenic |
AACACAAGGAGCAGCTCATG+TGG | 0.607987 | 1.1:+64114637 | MS.gene005475:CDS |
TTCTTCAAGAAATTCAGGGA+TGG | 0.609933 | 1.1:+64111111 | MS.gene005475:CDS |
AAACTGATCCAGATATTGAA+GGG | 0.611495 | 1.1:+64113580 | MS.gene005475:CDS |
CAGTCCCCTTCTAGTTCTAG+CGG | 0.612309 | 1.1:+64111523 | MS.gene005475:CDS |
TACTTCCTCCCACACAGCCT+CGG | 0.612916 | 1.1:-64112395 | None:intergenic |
TGAAGATGCTCATGAGTCAA+CGG | 0.614117 | 1.1:+64113066 | MS.gene005475:CDS |
GAGGATTATGCGCGATTACG+TGG | 0.614195 | 1.1:+64114572 | MS.gene005475:CDS |
GTCTGTCAGGTTGAAGACTG+TGG | 0.617577 | 1.1:+64108078 | MS.gene005475:CDS |
CTGGCCATAACAAACGGAGA+AGG | 0.618872 | 1.1:+64109582 | MS.gene005475:CDS |
TCACCGGCTGTGGAAAGGGA+CGG | 0.619862 | 1.1:+64108015 | MS.gene005475:CDS |
GACAATACATCTGATGAACT+AGG | 0.621300 | 1.1:+64113936 | MS.gene005475:CDS |
CAGGCGGAGAGTTTGCGAGT+GGG | 0.622495 | 1.1:+64107796 | MS.gene005475:CDS |
TACAGGTGGGAATTGAGGCA+TGG | 0.622502 | 1.1:+64114516 | MS.gene005475:intron |
CCGCCTGCACCGGATTCACA+CGG | 0.624536 | 1.1:-64107780 | None:intergenic |
GCAGGCGGAGAGTTTGCGAG+TGG | 0.624882 | 1.1:+64107795 | MS.gene005475:CDS |
TCTCAATATCAGTAGGACTG+TGG | 0.625316 | 1.1:-64112324 | None:intergenic |
GCAAGTCAGAATGATGAACA+AGG | 0.626908 | 1.1:+64111031 | MS.gene005475:CDS |
ACCTGCAATGCTCTCTATGG+TGG | 0.630335 | 1.1:+64114832 | MS.gene005475:CDS |
TTGTGGGAAATGCAATGCAG+AGG | 0.630557 | 1.1:+64108178 | MS.gene005475:CDS |
GCTGAAGTAAGACGTAGCCG+AGG | 0.633383 | 1.1:+64114743 | MS.gene005475:CDS |
ATGGTCAAAACAATACAACC+AGG | 0.638951 | 1.1:-64112358 | None:intergenic |
GACACCACTTCATATAGCAG+CGG | 0.639223 | 1.1:+64114037 | MS.gene005475:CDS |
TGTTGACTCAGATGATGGAA+CGG | 0.641750 | 1.1:+64111372 | MS.gene005475:CDS |
TCTGACTAATGATCCTTGCA+TGG | 0.643398 | 1.1:+64114091 | MS.gene005475:CDS |
GATGGTTTGAATGATGAAGC+TGG | 0.645206 | 1.1:+64107961 | MS.gene005475:CDS |
TATTCTCCAATGGTTCTCAG+GGG | 0.647451 | 1.1:+64111143 | MS.gene005475:CDS |
TTCTCCGCTAGAACTAGAAG+GGG | 0.647976 | 1.1:-64111527 | None:intergenic |
TCGCGCATAATCCTCAGGTG+TGG | 0.653531 | 1.1:-64114564 | None:intergenic |
AGCAGCGGTCTGTGTTTGTG+TGG | 0.653598 | 1.1:+64114859 | MS.gene005475:CDS |
CTAGTAGAGGTTCAAGCACG+CGG | 0.656034 | 1.1:-64113548 | None:intergenic |
AAAGTGCTTGATACAATGTA+GGG | 0.660121 | 1.1:-64113836 | None:intergenic |
CTGAAGTAAGACGTAGCCGA+GGG | 0.663241 | 1.1:+64114744 | MS.gene005475:CDS |
TGAACTAGGACCCAAAGACA+AGG | 0.663671 | 1.1:+64113950 | MS.gene005475:CDS |
AGCGGGAAAAGATGGTTCCG+AGG | 0.663787 | 1.1:+64114055 | MS.gene005475:CDS |
TACGTCTTCTTCATGCTCCG+AGG | 0.664152 | 1.1:+64107873 | MS.gene005475:CDS |
ACCGGGATCCCAGACCGGAG+TGG | 0.666079 | 1.1:-64107832 | None:intergenic |
TGTGGTGCAGATCTGAGTAG+AGG | 0.668323 | 1.1:+64108096 | MS.gene005475:CDS |
CAGTACAGGCTCCACACCTG+AGG | 0.669316 | 1.1:+64114553 | MS.gene005475:CDS |
ACAAGGAGCAGCTCATGTGG+TGG | 0.675515 | 1.1:+64114640 | MS.gene005475:CDS |
GAGAATCTTGTTGTGTCCAA+GGG | 0.677067 | 1.1:-64111450 | None:intergenic |
CAAGTCAGAATGATGAACAA+GGG | 0.681362 | 1.1:+64111032 | MS.gene005475:CDS |
ACTCCGGTCTGGGATCCCGG+TGG | 0.685385 | 1.1:+64107834 | MS.gene005475:CDS |
TGGTCAAAACAATACAACCA+GGG | 0.689970 | 1.1:-64112357 | None:intergenic |
GGACCATGATTGGTGTGCAG+TGG | 0.690358 | 1.1:+64113761 | MS.gene005475:CDS |
CTTGCTTCCGAGTAAGCCGG+GGG | 0.690508 | 1.1:-64111298 | None:intergenic |
TCGGAAGCAAGAGATAGCAG+TGG | 0.695304 | 1.1:+64111310 | MS.gene005475:CDS |
GTCAACGGATCAATACTCCG+AGG | 0.781576 | 1.1:+64113081 | MS.gene005475:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 64107643 | 64114964 | 64107643 | ID=MS.gene005475 |
chr1.1 | mRNA | 64107643 | 64114964 | 64107643 | ID=MS.gene005475.t1;Parent=MS.gene005475 |
chr1.1 | exon | 64107643 | 64108220 | 64107643 | ID=MS.gene005475.t1.exon1;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64107643 | 64108220 | 64107643 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64109526 | 64109707 | 64109526 | ID=MS.gene005475.t1.exon2;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64109526 | 64109707 | 64109526 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64110972 | 64111555 | 64110972 | ID=MS.gene005475.t1.exon3;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64110972 | 64111555 | 64110972 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64112142 | 64112216 | 64112142 | ID=MS.gene005475.t1.exon4;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64112142 | 64112216 | 64112142 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64112307 | 64112414 | 64112307 | ID=MS.gene005475.t1.exon5;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64112307 | 64112414 | 64112307 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64112518 | 64112635 | 64112518 | ID=MS.gene005475.t1.exon6;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64112518 | 64112635 | 64112518 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64112730 | 64112871 | 64112730 | ID=MS.gene005475.t1.exon7;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64112730 | 64112871 | 64112730 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64113030 | 64113174 | 64113030 | ID=MS.gene005475.t1.exon8;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64113030 | 64113174 | 64113030 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64113477 | 64114112 | 64113477 | ID=MS.gene005475.t1.exon9;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64113477 | 64114112 | 64113477 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
chr1.1 | exon | 64114521 | 64114964 | 64114521 | ID=MS.gene005475.t1.exon10;Parent=MS.gene005475.t1 |
chr1.1 | CDS | 64114521 | 64114964 | 64114521 | ID=cds.MS.gene005475.t1;Parent=MS.gene005475.t1 |
Gene Sequence |
Protein sequence |