AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005512

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005512.t1 MTR_1g086970 96.458 480 17 0 8 487 1 480 0.0 971
MS.gene005512.t1 MTR_7g109580 58.333 468 174 9 29 487 101 556 0.0 522
MS.gene005512.t1 MTR_2g034250 44.668 497 245 10 15 487 97 587 9.03e-129 386
MS.gene005512.t1 MTR_2g034260 43.927 494 253 10 6 487 105 586 5.32e-128 384
MS.gene005512.t1 MTR_2g034280 43.878 490 244 9 20 487 97 577 4.22e-125 377
MS.gene005512.t1 MTR_4g104020 30.435 391 245 13 108 485 144 520 3.57e-40 152
MS.gene005512.t1 MTR_7g027190 28.715 397 262 11 100 485 287 673 3.03e-39 151
MS.gene005512.t1 MTR_8g442410 28.889 405 264 12 92 485 134 525 2.26e-38 147
MS.gene005512.t1 MTR_3g065980 25.917 409 257 9 99 486 158 541 3.13e-38 147
MS.gene005512.t1 MTR_7g062120 26.923 390 257 13 108 485 367 740 2.94e-32 131
MS.gene005512.t1 MTR_4g102790 23.590 390 276 10 105 484 284 661 1.05e-31 129
MS.gene005512.t1 MTR_5g009080 25.431 464 256 15 91 485 36 478 5.94e-30 122
MS.gene005512.t1 MTR_4g064200 24.936 393 257 12 108 484 279 649 8.93e-29 120
MS.gene005512.t1 MTR_4g064150 26.131 398 262 11 103 484 351 732 1.34e-28 120
MS.gene005512.t1 MTR_4g076140 24.499 449 254 13 104 485 39 469 7.38e-28 116
MS.gene005512.t1 MTR_4g064120 25.255 392 257 11 102 475 243 616 1.35e-27 116
MS.gene005512.t1 MTR_2g097410 25.127 394 259 12 108 484 366 740 5.66e-27 115
MS.gene005512.t1 MTR_2g026250 25.143 350 239 9 146 485 260 596 1.26e-26 113
MS.gene005512.t1 MTR_7g074650 26.287 369 252 11 118 485 443 792 1.53e-26 114
MS.gene005512.t1 MTR_3g056110 27.042 355 226 15 146 485 206 542 3.57e-26 112
MS.gene005512.t1 MTR_2g097310 24.173 393 260 15 108 484 267 637 4.78e-26 112
MS.gene005512.t1 MTR_4g064180 25.127 394 255 12 102 475 243 616 1.09e-25 110
MS.gene005512.t1 MTR_4g064160 24.679 389 265 12 108 484 311 683 1.95e-25 110
MS.gene005512.t1 MTR_2g097463 23.350 394 261 10 108 484 285 654 6.11e-24 105
MS.gene005512.t1 MTR_2g097390 24.318 440 284 16 67 484 228 640 1.82e-23 104
MS.gene005512.t1 MTR_2g082090 24.859 354 233 12 146 484 243 578 2.18e-23 103
MS.gene005512.t1 MTR_4g097080 24.370 357 253 7 138 485 155 503 4.05e-23 102
MS.gene005512.t1 MTR_4g133660 23.782 349 243 8 146 484 207 542 4.20e-23 102
MS.gene005512.t1 MTR_2g097473 22.563 359 251 8 137 484 311 653 2.36e-22 100
MS.gene005512.t1 MTR_1g069725 25.513 341 231 11 147 484 142 462 2.40e-22 100
MS.gene005512.t1 MTR_2g097380 23.936 376 233 15 118 484 229 560 2.75e-22 100
MS.gene005512.t1 MTR_2g097467 23.164 354 245 8 142 484 316 653 5.31e-22 99.8
MS.gene005512.t1 MTR_3g022830 25.189 397 226 11 146 486 56 437 1.55e-21 97.4
MS.gene005512.t1 MTR_5g094450 24.490 392 265 14 109 485 157 532 2.14e-21 97.4
MS.gene005512.t1 MTR_2g097350 23.544 395 260 13 108 484 269 639 4.17e-21 97.1
MS.gene005512.t1 MTR_4g076020 23.784 370 251 10 118 485 89 429 1.86e-20 94.0
MS.gene005512.t1 MTR_5g097480 22.571 350 248 10 146 485 208 544 1.84e-19 91.7
MS.gene005512.t1 MTR_3g089055 27.178 287 187 9 213 485 292 570 7.10e-19 90.1
MS.gene005512.t1 MTR_3g089055 27.178 287 187 9 213 485 287 565 7.47e-19 89.7
MS.gene005512.t1 MTR_4g077760 22.616 367 240 11 137 485 215 555 1.33e-18 89.0
MS.gene005512.t1 MTR_1g029420 26.923 286 187 9 214 485 315 592 2.58e-18 88.2
MS.gene005512.t1 MTR_5g015490 23.691 363 254 9 138 485 136 490 2.42e-17 85.1
MS.gene005512.t1 MTR_3g072710 23.077 403 276 12 103 484 110 499 2.66e-17 84.7
MS.gene005512.t1 MTR_7g057230 23.158 380 269 11 112 484 293 656 3.20e-15 79.0
MS.gene005512.t1 MTR_8g093070 24.304 395 252 15 106 484 132 495 4.61e-14 74.7
MS.gene005512.t1 MTR_5g058860 21.728 405 279 11 102 484 108 496 7.23e-14 74.3
MS.gene005512.t1 MTR_0092s0100 23.951 405 267 16 93 485 356 731 8.20e-13 71.2
MS.gene005512.t1 MTR_0092s0100 23.951 405 267 16 93 485 353 728 8.47e-13 71.2
MS.gene005512.t1 MTR_1g096030 23.529 374 231 16 146 487 111 461 2.37e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005512.t1 AT3G03450 27.068 399 259 8 99 486 169 546 6.28e-43 160
MS.gene005512.t1 AT1G66350 25.648 386 264 7 102 486 144 507 5.79e-42 157
MS.gene005512.t1 AT5G17490 27.296 392 251 10 104 486 151 517 1.46e-39 150
MS.gene005512.t1 AT2G01570 25.445 393 268 8 99 486 210 582 5.07e-39 149
MS.gene005512.t1 AT1G14920 26.515 396 260 9 99 486 158 530 1.77e-37 144
MS.gene005512.t1 AT2G29065 26.975 367 238 9 136 484 273 627 6.65e-36 141
MS.gene005512.t1 AT3G46600 26.750 400 243 14 105 485 3 371 4.26e-34 132
MS.gene005512.t1 AT5G59450 27.250 400 246 14 108 485 222 598 4.61e-34 135
MS.gene005512.t1 AT3G46600 26.799 403 245 14 102 485 176 547 1.02e-33 134
MS.gene005512.t1 AT3G46600 26.799 403 245 14 102 485 208 579 1.40e-33 134
MS.gene005512.t1 AT1G63100 24.740 384 260 10 121 484 254 628 4.75e-30 124
MS.gene005512.t1 AT1G63100 24.740 384 260 10 121 484 279 653 4.94e-30 124
MS.gene005512.t1 AT3G54220 27.005 374 244 13 118 484 298 649 1.66e-28 119
MS.gene005512.t1 AT1G07530 24.505 404 262 11 101 484 384 764 2.18e-28 119
MS.gene005512.t1 AT5G41920 26.478 389 265 12 100 485 30 400 6.07e-28 115
MS.gene005512.t1 AT4G17230 24.874 398 260 13 105 485 150 525 3.27e-27 115
MS.gene005512.t1 AT4G17230 24.874 398 260 13 105 485 150 525 3.27e-27 115
MS.gene005512.t1 AT2G29060 26.238 404 241 14 109 484 280 654 3.36e-27 115
MS.gene005512.t1 AT2G29060 26.238 404 241 14 109 484 317 691 3.69e-27 115
MS.gene005512.t1 AT1G07520 24.100 361 237 9 145 484 184 528 4.55e-27 114
MS.gene005512.t1 AT1G07520 24.100 361 237 9 145 484 184 528 4.55e-27 114
MS.gene005512.t1 AT1G07520 24.100 361 237 9 145 484 348 692 4.87e-27 115
MS.gene005512.t1 AT1G07520 24.100 361 237 9 145 484 349 693 5.10e-27 115
MS.gene005512.t1 AT1G50420 24.222 450 255 15 104 485 48 479 1.90e-25 109
MS.gene005512.t1 AT1G50600 24.929 353 236 11 146 485 190 526 2.22e-23 103
MS.gene005512.t1 AT1G50600 24.929 353 236 11 146 485 261 597 2.89e-23 103
MS.gene005512.t1 AT1G50600 24.929 353 236 11 146 485 265 601 3.03e-23 103
MS.gene005512.t1 AT1G55580 25.668 374 241 11 146 485 75 445 1.82e-22 100
MS.gene005512.t1 AT2G04890 23.706 367 251 11 130 485 65 413 5.43e-22 98.6
MS.gene005512.t1 AT4G37650 23.077 390 275 8 114 485 147 529 7.84e-22 99.0
MS.gene005512.t1 AT2G37650 24.422 389 266 9 108 485 330 701 8.68e-22 99.4
MS.gene005512.t1 AT2G37650 24.422 389 266 9 108 485 342 713 9.91e-22 99.4
MS.gene005512.t1 AT5G48150 23.238 383 266 10 118 485 121 490 3.63e-21 96.7
MS.gene005512.t1 AT5G48150 23.238 383 266 10 118 485 121 490 3.63e-21 96.7
MS.gene005512.t1 AT5G48150 23.238 383 266 10 118 485 121 490 3.63e-21 96.7
MS.gene005512.t1 AT5G48150 23.238 383 266 10 118 485 121 490 3.63e-21 96.7
MS.gene005512.t1 AT5G66770 22.663 353 244 10 145 485 249 584 1.21e-17 86.3
MS.gene005512.t1 AT3G50650 23.311 296 207 8 206 485 251 542 9.05e-15 77.0
MS.gene005512.t1 AT3G49950 24.415 299 200 8 206 484 115 407 1.12e-14 76.3
MS.gene005512.t1 AT4G08250 25.000 416 273 18 87 484 82 476 2.76e-14 75.5

Find 69 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTTATCAAGCTAATT+TGG 0.192441 1.1:-64457167 MS.gene005512:CDS
AATGGGAAGTGTTTAATAAT+TGG 0.196622 1.1:-64457100 MS.gene005512:CDS
CATTTGATTCATCTTAATAT+TGG 0.236657 1.1:-64457805 MS.gene005512:CDS
AATAATCTTTACATTCCTTA+TGG 0.249550 1.1:-64458237 MS.gene005512:CDS
GACCGAATTGATTGATAAAA+TGG 0.257427 1.1:-64457941 MS.gene005512:CDS
CATGCCACAGTGATGAGTTT+TGG 0.263501 1.1:+64458262 None:intergenic
ATTCCTTATGGAACTGTTCT+TGG 0.265945 1.1:-64458225 MS.gene005512:CDS
TCGCAAACAAGGGTGAATTA+TGG 0.302490 1.1:+64457419 None:intergenic
AAGGCTAAGTTAGAAGAAAT+TGG 0.332292 1.1:-64457685 MS.gene005512:CDS
ATGAATGAAAGTGGAAATAT+TGG 0.333082 1.1:-64458078 MS.gene005512:CDS
TCCATGTTCACTTAGGACTA+TGG 0.336208 1.1:-64457530 MS.gene005512:CDS
GATAAGAAACATTGTTGGTT+TGG 0.346018 1.1:-64457284 MS.gene005512:CDS
ATTCTGAAGATCACAGCTAT+TGG 0.354564 1.1:-64457718 MS.gene005512:CDS
AATCAAGTAATGCAATTTGC+TGG 0.354696 1.1:-64457871 MS.gene005512:CDS
TTATGAGTGTAGAGTGATAA+TGG 0.355610 1.1:-64457326 MS.gene005512:CDS
GAAGATATAATAACACTTGC+AGG 0.358002 1.1:-64458297 MS.gene005512:CDS
ATTCACCCTTGTTTGCGAAT+AGG 0.360715 1.1:-64457414 MS.gene005512:CDS
CTTGAAGTGCTTGAGAGAAA+TGG 0.363368 1.1:+64458031 None:intergenic
CAAGCTGAGACTGAATGAAT+TGG 0.383878 1.1:+64457064 None:intergenic
AGGTATAGAATGGTAGAAAC+TGG 0.390006 1.1:-64457202 MS.gene005512:CDS
GGAATGTGAAGATTGATGTT+TGG 0.392726 1.1:-64457240 MS.gene005512:CDS
TCAAGTACTATCATAATAAA+CGG 0.431397 1.1:+64457454 None:intergenic
AAAACTATGTTATATAATAA+GGG 0.433950 1.1:+64457625 None:intergenic
TTTCATCTCATGAATGAAAG+TGG 0.437460 1.1:-64458087 MS.gene005512:CDS
CAGTTTCATCTTTCCTCGTC+CGG 0.439195 1.1:+64457990 None:intergenic
GAGAGAATCAACAGAGAAAC+CGG 0.442776 1.1:-64458009 MS.gene005512:CDS
CAATATTAAGATGAATCAAA+TGG 0.442889 1.1:+64457806 None:intergenic
AATTGCATTACTTGATTGAA+AGG 0.446453 1.1:+64457877 None:intergenic
ATTCATCTTAATATTGGATG+TGG 0.448243 1.1:-64457799 MS.gene005512:CDS
TTTATTCTCCATGTTCACTT+AGG 0.457172 1.1:-64457537 MS.gene005512:CDS
TGTTGATACTTGTATAAAAG+AGG 0.464976 1.1:-64457350 MS.gene005512:CDS
GGTATCAAATTCTGATGGCT+TGG 0.468081 1.1:-64457509 MS.gene005512:CDS
GTGATCTTCAGAATTTCAAC+CGG 0.468897 1.1:+64457727 None:intergenic
ATCAATTCCACGGCTTAAGC+AGG 0.469908 1.1:-64458445 MS.gene005512:CDS
TGCTGGTGTACAAGCTATAG+TGG 0.474092 1.1:-64457854 MS.gene005512:CDS
GAAGGGATAAGAAACATTGT+TGG 0.474796 1.1:-64457289 MS.gene005512:CDS
TGTTCTTGGAAGCTTGTTGT+CGG 0.475836 1.1:-64458211 MS.gene005512:CDS
GTTCTTTGCAAGGTATAGAA+TGG 0.484270 1.1:-64457212 MS.gene005512:CDS
ATATAATAAGGGTAAGTTCA+AGG 0.494287 1.1:+64457636 None:intergenic
AAGATGAAGAAAGGAAGGTT+AGG 0.502253 1.1:-64457261 MS.gene005512:CDS
CAATTCATTCAGTCTCAGCT+TGG 0.509421 1.1:-64457063 MS.gene005512:CDS
TTGGTTTGGAAGATGAAGAA+AGG 0.515913 1.1:-64457270 MS.gene005512:CDS
TTTCAACCGGCTTGTCCTTG+CGG 0.519987 1.1:+64457740 None:intergenic
GGAAGTGTTTAATAATTGGA+TGG 0.522082 1.1:-64457096 MS.gene005512:CDS
GTGTTTAATAATTGGATGGA+AGG 0.523650 1.1:-64457092 MS.gene005512:CDS
GTTTAATAATTGGATGGAAG+GGG 0.527241 1.1:-64457090 MS.gene005512:CDS
TTTGGAAGATGAAGAAAGGA+AGG 0.529462 1.1:-64457266 MS.gene005512:CDS
CTTCCAAGAACAGTTCCATA+AGG 0.531300 1.1:+64458222 None:intergenic
AACAAACCTATTCGCAAACA+AGG 0.532041 1.1:+64457408 None:intergenic
TGTTTAATAATTGGATGGAA+GGG 0.540180 1.1:-64457091 MS.gene005512:CDS
TCAAGTGATGCTAAAGAAGA+TGG 0.542006 1.1:+64458408 None:intergenic
TTTGGAGAAGGTTCTTTGCA+AGG 0.543910 1.1:-64457222 MS.gene005512:CDS
ATGGAAGCAATATTATCTGA+AGG 0.550756 1.1:-64457307 MS.gene005512:CDS
AGTAGACCGCAAGGACAAGC+CGG 0.586291 1.1:-64457746 MS.gene005512:CDS
CTAGCAGCAGCTGAGAGAGT+AGG 0.586422 1.1:-64458150 MS.gene005512:CDS
ACCATAGTCCTAAGTGAACA+TGG 0.589256 1.1:+64457529 None:intergenic
TGGAAGCAATATTATCTGAA+GGG 0.593391 1.1:-64457306 MS.gene005512:CDS
TGAAGATTGATGTTTGGAGA+AGG 0.596614 1.1:-64457234 MS.gene005512:CDS
TGGCTTGGAGAATTTGATGA+AGG 0.603211 1.1:-64457494 MS.gene005512:CDS
ACTATGGTATCAAATTCTGA+TGG 0.608580 1.1:-64457514 MS.gene005512:CDS
AAGCTATGATATCAATTCCA+CGG 0.609132 1.1:-64458455 MS.gene005512:CDS
ATCAACAGAGAAACCGGACG+AGG 0.613864 1.1:-64458003 MS.gene005512:CDS
ATTTGCACCTGCTTAAGCCG+TGG 0.626082 1.1:+64458438 None:intergenic
GCAAGCATTAGTAGACCGCA+AGG 0.646109 1.1:-64457755 MS.gene005512:CDS
ACAAACCTATTCGCAAACAA+GGG 0.673185 1.1:+64457409 None:intergenic
TAGATCAAATGAGAGAAACA+AGG 0.680410 1.1:-64457965 MS.gene005512:CDS
GATGCTAAAGAAGATGGTGG+TGG 0.682167 1.1:+64458414 None:intergenic
AGTGATGCTAAAGAAGATGG+TGG 0.725977 1.1:+64458411 None:intergenic
ATATCCAAAACTCATCACTG+TGG 0.776374 1.1:-64458266 MS.gene005512:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTATGTTATATAATA+AGG + chr1.1:64457922-64457941 None:intergenic 10.0%
!! AAAACTATGTTATATAATAA+GGG + chr1.1:64457921-64457940 None:intergenic 10.0%
!! AATAATCTTTACATTCCTTA+TGG - chr1.1:64457306-64457325 MS.gene005512:CDS 20.0%
!! CAATATTAAGATGAATCAAA+TGG + chr1.1:64457740-64457759 None:intergenic 20.0%
!! CATTTGATTCATCTTAATAT+TGG - chr1.1:64457738-64457757 MS.gene005512:CDS 20.0%
!! TCAAGTACTATCATAATAAA+CGG + chr1.1:64458092-64458111 None:intergenic 20.0%
!! TTCAATTTATCAAGCTAATT+TGG - chr1.1:64458376-64458395 MS.gene005512:CDS 20.0%
!! TTTGTACTATAGACAAAAAT+GGG - chr1.1:64458426-64458445 MS.gene005512:CDS 20.0%
!!! TTCCATTTTATCAATCAATT+CGG + chr1.1:64457607-64457626 None:intergenic 20.0%
!!! TTTTGTACTATAGACAAAAA+TGG - chr1.1:64458425-64458444 MS.gene005512:CDS 20.0%
! AATTGCATTACTTGATTGAA+AGG + chr1.1:64457669-64457688 None:intergenic 25.0%
! ATATAATAAGGGTAAGTTCA+AGG + chr1.1:64457910-64457929 None:intergenic 25.0%
! ATGAATGAAAGTGGAAATAT+TGG - chr1.1:64457465-64457484 MS.gene005512:CDS 25.0%
! ATTCATCTTAATATTGGATG+TGG - chr1.1:64457744-64457763 MS.gene005512:CDS 25.0%
! CTTGAGCTATTGAAAAATTA+TGG - chr1.1:64457153-64457172 MS.gene005512:CDS 25.0%
! TGTTGATACTTGTATAAAAG+AGG - chr1.1:64458193-64458212 MS.gene005512:CDS 25.0%
! TGTTTAATAATTGGATGGAA+GGG - chr1.1:64458452-64458471 MS.gene005512:CDS 25.0%
! TTACTAAAAAGTTTGACTGT+GGG - chr1.1:64458399-64458418 MS.gene005512:CDS 25.0%
!!! AATGGGAAGTGTTTAATAAT+TGG - chr1.1:64458443-64458462 MS.gene005512:CDS 25.0%
AAGCTATGATATCAATTCCA+CGG - chr1.1:64457088-64457107 MS.gene005512:CDS 30.0%
AAGGCTAAGTTAGAAGAAAT+TGG - chr1.1:64457858-64457877 MS.gene005512:CDS 30.0%
AATCAAGTAATGCAATTTGC+TGG - chr1.1:64457672-64457691 MS.gene005512:CDS 30.0%
ACTATGGTATCAAATTCTGA+TGG - chr1.1:64458029-64458048 MS.gene005512:CDS 30.0%
ATGGAAGCAATATTATCTGA+AGG - chr1.1:64458236-64458255 MS.gene005512:CDS 30.0%
GAAGATATAATAACACTTGC+AGG - chr1.1:64457246-64457265 MS.gene005512:CDS 30.0%
GACCGAATTGATTGATAAAA+TGG - chr1.1:64457602-64457621 MS.gene005512:CDS 30.0%
GTGTTTAATAATTGGATGGA+AGG - chr1.1:64458451-64458470 MS.gene005512:CDS 30.0%
GTTACTAAAAAGTTTGACTG+TGG - chr1.1:64458398-64458417 MS.gene005512:CDS 30.0%
GTTTAATAATTGGATGGAAG+GGG - chr1.1:64458453-64458472 MS.gene005512:CDS 30.0%
TAGATCAAATGAGAGAAACA+AGG - chr1.1:64457578-64457597 MS.gene005512:CDS 30.0%
TGGAAGCAATATTATCTGAA+GGG - chr1.1:64458237-64458256 MS.gene005512:CDS 30.0%
TTATGAGTGTAGAGTGATAA+TGG - chr1.1:64458217-64458236 MS.gene005512:CDS 30.0%
TTTATTCTCCATGTTCACTT+AGG - chr1.1:64458006-64458025 MS.gene005512:CDS 30.0%
TTTCATCTCATGAATGAAAG+TGG - chr1.1:64457456-64457475 MS.gene005512:CDS 30.0%
! AGCTATTGGATTTTCTAACA+AGG - chr1.1:64457839-64457858 MS.gene005512:CDS 30.0%
! AGTTTTTGTTGAAGATGCTA+TGG - chr1.1:64457935-64457954 MS.gene005512:CDS 30.0%
! GATAAGAAACATTGTTGGTT+TGG - chr1.1:64458259-64458278 MS.gene005512:CDS 30.0%
!! GGAAGTGTTTAATAATTGGA+TGG - chr1.1:64458447-64458466 MS.gene005512:CDS 30.0%
AACAAACCTATTCGCAAACA+AGG + chr1.1:64458138-64458157 None:intergenic 35.0%
AAGATGAAGAAAGGAAGGTT+AGG - chr1.1:64458282-64458301 MS.gene005512:CDS 35.0%
ACAAACCTATTCGCAAACAA+GGG + chr1.1:64458137-64458156 None:intergenic 35.0%
AGGTATAGAATGGTAGAAAC+TGG - chr1.1:64458341-64458360 MS.gene005512:CDS 35.0%
ATATCCAAAACTCATCACTG+TGG - chr1.1:64457277-64457296 MS.gene005512:CDS 35.0%
ATTCCTTATGGAACTGTTCT+TGG - chr1.1:64457318-64457337 MS.gene005512:CDS 35.0%
GAAGGGATAAGAAACATTGT+TGG - chr1.1:64458254-64458273 MS.gene005512:CDS 35.0%
GGAATGTGAAGATTGATGTT+TGG - chr1.1:64458303-64458322 MS.gene005512:CDS 35.0%
GTGATCTTCAGAATTTCAAC+CGG + chr1.1:64457819-64457838 None:intergenic 35.0%
GTTCTTTGCAAGGTATAGAA+TGG - chr1.1:64458331-64458350 MS.gene005512:CDS 35.0%
TCAAGTGATGCTAAAGAAGA+TGG + chr1.1:64457138-64457157 None:intergenic 35.0%
TGAAGATTGATGTTTGGAGA+AGG - chr1.1:64458309-64458328 MS.gene005512:CDS 35.0%
TTTGGAAGATGAAGAAAGGA+AGG - chr1.1:64458277-64458296 MS.gene005512:CDS 35.0%
! ATTCTGAAGATCACAGCTAT+TGG - chr1.1:64457825-64457844 MS.gene005512:CDS 35.0%
! TCTTCAGTTGACAACTTTTG+AGG + chr1.1:64457231-64457250 None:intergenic 35.0%
!! TTGGTTTGGAAGATGAAGAA+AGG - chr1.1:64458273-64458292 MS.gene005512:CDS 35.0%
ACCATAGTCCTAAGTGAACA+TGG + chr1.1:64458017-64458036 None:intergenic 40.0%
AGTGATGCTAAAGAAGATGG+TGG + chr1.1:64457135-64457154 None:intergenic 40.0%
CAAGCTGAGACTGAATGAAT+TGG + chr1.1:64458482-64458501 None:intergenic 40.0%
CAATTCATTCAGTCTCAGCT+TGG - chr1.1:64458480-64458499 MS.gene005512:CDS 40.0%
CTTCCAAGAACAGTTCCATA+AGG + chr1.1:64457324-64457343 None:intergenic 40.0%
GAGAGAATCAACAGAGAAAC+CGG - chr1.1:64457534-64457553 MS.gene005512:CDS 40.0%
GGTATCAAATTCTGATGGCT+TGG - chr1.1:64458034-64458053 MS.gene005512:CDS 40.0%
TCCATGTTCACTTAGGACTA+TGG - chr1.1:64458013-64458032 MS.gene005512:CDS 40.0%
TCGCAAACAAGGGTGAATTA+TGG + chr1.1:64458127-64458146 None:intergenic 40.0%
TTTGGAGAAGGTTCTTTGCA+AGG - chr1.1:64458321-64458340 MS.gene005512:CDS 40.0%
! ATTCACCCTTGTTTGCGAAT+AGG - chr1.1:64458129-64458148 MS.gene005512:CDS 40.0%
! CTTGAAGTGCTTGAGAGAAA+TGG + chr1.1:64457515-64457534 None:intergenic 40.0%
! TGGCTTGGAGAATTTGATGA+AGG - chr1.1:64458049-64458068 MS.gene005512:CDS 40.0%
!! TGTTCTTGGAAGCTTGTTGT+CGG - chr1.1:64457332-64457351 MS.gene005512:CDS 40.0%
ATCAATTCCACGGCTTAAGC+AGG - chr1.1:64457098-64457117 MS.gene005512:CDS 45.0%
CAGTTTCATCTTTCCTCGTC+CGG + chr1.1:64457556-64457575 None:intergenic 45.0%
TGCTGGTGTACAAGCTATAG+TGG - chr1.1:64457689-64457708 MS.gene005512:CDS 45.0%
! CATGCCACAGTGATGAGTTT+TGG + chr1.1:64457284-64457303 None:intergenic 45.0%
! GATGCTAAAGAAGATGGTGG+TGG + chr1.1:64457132-64457151 None:intergenic 45.0%
ATCAACAGAGAAACCGGACG+AGG - chr1.1:64457540-64457559 MS.gene005512:CDS 50.0%
ATTTGCACCTGCTTAAGCCG+TGG + chr1.1:64457108-64457127 None:intergenic 50.0%
GCAAGCATTAGTAGACCGCA+AGG - chr1.1:64457788-64457807 MS.gene005512:CDS 50.0%
!! TTTCAACCGGCTTGTCCTTG+CGG + chr1.1:64457806-64457825 None:intergenic 50.0%
AGTAGACCGCAAGGACAAGC+CGG - chr1.1:64457797-64457816 MS.gene005512:CDS 55.0%
CTAGCAGCAGCTGAGAGAGT+AGG - chr1.1:64457393-64457412 MS.gene005512:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 64457051 64458514 64457051 ID=MS.gene005512
chr1.1 mRNA 64457051 64458514 64457051 ID=MS.gene005512.t1;Parent=MS.gene005512
chr1.1 exon 64457051 64458514 64457051 ID=MS.gene005512.t1.exon1;Parent=MS.gene005512.t1
chr1.1 CDS 64457051 64458514 64457051 ID=cds.MS.gene005512.t1;Parent=MS.gene005512.t1
Gene Sequence

>MS.gene005512

ATGGAGAAGTTACTACAAGATTTAGAGCAAGAAAATCAAGCTATGATATCAATTCCACGGCTTAAGCAGGTGCAAATGCCACCACCATCTTCTTTAGCATCACTTGAGCTATTGAAAAATTATGGAAGCAAGTTCAATAAGCAAAAAAGCAAAAGCAATGTTGAAACTTGTGTAAGTCCTCAAAAGTTGTCAACTGAAGATATAATAACACTTGCAGGAACGAAGTATATCCAAAACTCATCACTGTGGCATGATAATAATCTTTACATTCCTTATGGAACTGTTCTTGGAAGCTTGTTGTCGGACGAAGAAAATAAACAAGTTGAACTAGCTCAGTTTGTTCTAGCAGCAGCTGAGAGAGTAGGTTGTCAACAATTTGAACGTGCAAACATGTTACTTTCACATTTTCATCTCATGAATGAAAGTGGAAATATTGGAAGCACAGTTCAGAGACTTCTTTTCCATTTCTCTCAAGCACTTCAAGAGAGAATCAACAGAGAAACCGGACGAGGAAAGATGAAACTGCATAGATCAAATGAGAGAAACAAGGAGACCGAATTGATTGATAAAATGGAATTAGATACTAACATAGTAGTTAAATGTCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTTGCTGGTGTACAAGCTATAGTGGAACATGTTGCATCACAAACAAAAATCCATTTGATTCATCTTAATATTGGATGTGGAGTGATGAGTACATGTTTCATGCAAGCATTAGTAGACCGCAAGGACAAGCCGGTTGAAATTCTGAAGATCACAGCTATTGGATTTTCTAACAAGGCTAAGTTAGAAGAAATTGGCAGAAGTTTAATGAGTTTTGCTCAATCCTTGAACTTACCCTTATTATATAACATAGTTTTTGTTGAAGATGCTATGGAGATTAAGTTAGATCAATTTGAAATTAAATATGATGAAGCTGTTGCTATTTATTCTCCATGTTCACTTAGGACTATGGTATCAAATTCTGATGGCTTGGAGAATTTGATGAAGGTGATAAGAAAAATGAAACCGTTTATTATGATAGTACTTGAACTTGAAGCAAACCATAATTCACCCTTGTTTGCGAATAGGTTTGTTGAAGCATTGTTCTTTTACTCAGCATTTTTTGACTGTGTTGATACTTGTATAAAAGAGGATTATGAGTGTAGAGTGATAATGGAAGCAATATTATCTGAAGGGATAAGAAACATTGTTGGTTTGGAAGATGAAGAAAGGAAGGTTAGGAATGTGAAGATTGATGTTTGGAGAAGGTTCTTTGCAAGGTATAGAATGGTAGAAACTGGATTCAGTGAGTCTTCAATTTATCAAGCTAATTTGGTTACTAAAAAGTTTGACTGTGGGAAGTTTTGTACTATAGACAAAAATGGGAAGTGTTTAATAATTGGATGGAAGGGGACTCCAATTCATTCAGTCTCAGCTTGGAAGTTTCTTTGA
Protein sequence

>MS.gene005512.t1

MEKLLQDLEQENQAMISIPRLKQVQMPPPSSLASLELLKNYGSKFNKQKSKSNVETCVSPQKLSTEDIITLAGTKYIQNSSLWHDNNLYIPYGTVLGSLLSDEENKQVELAQFVLAAAERVGCQQFERANMLLSHFHLMNESGNIGSTVQRLLFHFSQALQERINRETGRGKMKLHRSNERNKETELIDKMELDTNIVVKCHQKIPFNQVMQFAGVQAIVEHVASQTKIHLIHLNIGCGVMSTCFMQALVDRKDKPVEILKITAIGFSNKAKLEEIGRSLMSFAQSLNLPLLYNIVFVEDAMEIKLDQFEIKYDEAVAIYSPCSLRTMVSNSDGLENLMKVIRKMKPFIMIVLELEANHNSPLFANRFVEALFFYSAFFDCVDTCIKEDYECRVIMEAILSEGIRNIVGLEDEERKVRNVKIDVWRRFFARYRMVETGFSESSIYQANLVTKKFDCGKFCTIDKNGKCLIIGWKGTPIHSVSAWKFL