AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00555

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00555.t1 MTR_1g017140 94.949 297 14 1 3 298 45 341 0.0 584
MS.gene00555.t1 MTR_3g103570 50.321 312 112 13 3 297 45 330 1.02e-80 248
MS.gene00555.t1 MTR_5g014990 71.545 123 30 2 3 125 45 162 1.24e-54 180
MS.gene00555.t1 MTR_4g097570 81.373 102 19 0 2 103 45 146 2.35e-46 158
MS.gene00555.t1 MTR_4g097570 82.178 101 18 0 3 103 45 145 5.79e-46 157
MS.gene00555.t1 MTR_4g057635 87.838 74 9 0 4 77 46 119 1.93e-42 149
MS.gene00555.t1 MTR_4g128670 95.522 67 3 0 3 69 45 111 2.13e-41 146
MS.gene00555.t1 MTR_6g090405 54.545 132 46 2 4 135 46 163 9.94e-39 137
MS.gene00555.t1 MTR_1g017000 79.452 73 15 0 4 76 46 118 1.39e-38 136
MS.gene00555.t1 MTR_7g102110 77.027 74 17 0 3 76 45 118 4.17e-38 136
MS.gene00555.t1 MTR_2g095520 87.879 66 8 0 4 69 46 111 3.05e-37 135
MS.gene00555.t1 MTR_3g461490 71.622 74 21 0 4 77 45 118 3.27e-32 122
MS.gene00555.t1 MTR_3g097450 50.000 114 55 1 4 117 45 156 1.11e-31 119
MS.gene00555.t1 MTR_1g112760 53.535 99 45 1 2 100 44 141 1.93e-31 117
MS.gene00555.t1 MTR_1g043080 47.321 112 59 0 4 115 45 156 4.65e-31 117
MS.gene00555.t1 MTR_4g105130 69.863 73 22 0 4 76 45 117 5.84e-31 119
MS.gene00555.t1 MTR_7g110830 46.565 131 58 1 4 122 45 175 6.58e-31 119
MS.gene00555.t1 MTR_4g073420 65.333 75 26 0 4 78 45 119 8.11e-31 117
MS.gene00555.t1 MTR_3g077110 65.333 75 26 0 2 76 43 117 1.05e-30 118
MS.gene00555.t1 MTR_6g009430 68.493 73 23 0 4 76 45 117 1.06e-30 118
MS.gene00555.t1 MTR_1g085640 69.333 75 23 0 4 78 45 119 1.07e-30 119
MS.gene00555.t1 MTR_1g085040 67.568 74 24 0 2 75 43 116 1.62e-30 118
MS.gene00555.t1 MTR_0251s0050 65.278 72 25 0 4 75 46 117 1.92e-30 115
MS.gene00555.t1 MTR_4g125520 61.628 86 28 1 4 89 45 125 4.90e-30 115
MS.gene00555.t1 MTR_2g089450 38.608 158 91 2 4 157 45 200 6.00e-30 114
MS.gene00555.t1 MTR_8g095390 68.056 72 23 0 4 75 45 116 1.28e-29 114
MS.gene00555.t1 MTR_7g117730 62.195 82 26 1 4 85 45 121 1.59e-29 113
MS.gene00555.t1 MTR_1g100653 66.667 72 24 0 4 75 45 116 1.76e-29 114
MS.gene00555.t1 MTR_4g100720 67.606 71 23 0 4 74 46 116 2.04e-29 110
MS.gene00555.t1 MTR_0008s0390 63.014 73 27 0 4 76 46 118 2.20e-29 113
MS.gene00555.t1 MTR_4g485530 61.333 75 29 0 4 78 45 119 3.02e-29 110
MS.gene00555.t1 MTR_0197s0010 46.923 130 56 3 1 117 31 160 3.35e-29 111
MS.gene00555.t1 MTR_5g029840 65.753 73 25 0 4 76 45 117 3.52e-29 114
MS.gene00555.t1 MTR_1g076150 49.091 110 51 1 2 111 43 147 3.67e-29 112
MS.gene00555.t1 MTR_5g007370 62.667 75 28 0 2 76 43 117 4.45e-29 112
MS.gene00555.t1 MTR_7g076740 62.162 74 28 0 2 75 44 117 4.80e-29 112
MS.gene00555.t1 MTR_4g478180 64.000 75 27 0 2 76 44 118 4.98e-29 114
MS.gene00555.t1 MTR_1g043050 52.475 101 48 0 4 104 45 145 6.28e-29 111
MS.gene00555.t1 MTR_3g074520 64.000 75 27 0 2 76 43 117 6.50e-29 113
MS.gene00555.t1 MTR_8g027345 65.278 72 25 0 4 75 45 116 7.47e-29 112
MS.gene00555.t1 MTR_0063s0090 51.064 94 46 0 2 95 43 136 1.14e-28 110
MS.gene00555.t1 MTR_7g115650 63.889 72 26 0 4 75 45 116 1.17e-28 109
MS.gene00555.t1 MTR_3g052450 65.278 72 25 0 3 74 72 143 1.18e-28 115
MS.gene00555.t1 MTR_5g079670 58.904 73 30 0 4 76 44 116 1.47e-28 109
MS.gene00555.t1 MTR_8g042410 64.789 71 25 0 4 74 70 140 1.59e-28 115
MS.gene00555.t1 MTR_7g096930 55.172 87 39 0 4 90 45 131 2.46e-28 110
MS.gene00555.t1 MTR_2g097910 63.889 72 26 0 4 75 53 124 2.98e-28 111
MS.gene00555.t1 MTR_3g011610 39.011 182 72 6 4 152 70 245 3.15e-28 114
MS.gene00555.t1 MTR_4g082290 68.056 72 23 0 4 75 45 116 3.44e-28 112
MS.gene00555.t1 MTR_4g065017 40.136 147 62 3 4 142 50 178 3.58e-28 111
MS.gene00555.t1 MTR_2g011660 64.384 73 26 0 4 76 46 118 4.21e-28 111
MS.gene00555.t1 MTR_3g028740 65.278 72 25 0 4 75 55 126 4.66e-28 111
MS.gene00555.t1 MTR_2g089620 65.753 73 25 0 4 76 45 117 4.97e-28 110
MS.gene00555.t1 MTR_4g082230 68.056 72 23 0 4 75 45 116 5.46e-28 112
MS.gene00555.t1 MTR_4g091490 64.384 73 26 0 4 76 46 118 5.88e-28 111
MS.gene00555.t1 MTR_8g031360 61.333 75 29 0 2 76 45 119 6.12e-28 109
MS.gene00555.t1 MTR_2g099740 60.526 76 30 0 2 77 43 118 6.46e-28 111
MS.gene00555.t1 MTR_3g052430 64.789 71 25 0 4 74 74 144 7.12e-28 113
MS.gene00555.t1 MTR_4g102380 61.333 75 29 0 2 76 43 117 7.55e-28 108
MS.gene00555.t1 MTR_8g020490 65.278 72 25 0 4 75 41 112 7.99e-28 108
MS.gene00555.t1 MTR_0008s0470 58.904 73 30 0 4 76 46 118 8.96e-28 109
MS.gene00555.t1 MTR_8g017340 63.158 76 28 0 2 77 44 119 1.12e-27 112
MS.gene00555.t1 MTR_1g062940 36.269 193 86 5 2 179 37 207 1.12e-27 107
MS.gene00555.t1 MTR_2g064160 60.000 75 30 0 4 78 44 118 1.18e-27 109
MS.gene00555.t1 MTR_3g083540 61.644 73 28 0 4 76 74 146 1.22e-27 109
MS.gene00555.t1 MTR_7g111290 72.308 65 18 0 4 68 3 67 1.29e-27 109
MS.gene00555.t1 MTR_8g098860 61.111 72 28 0 4 75 45 116 1.46e-27 109
MS.gene00555.t1 MTR_2g089420 40.984 122 69 2 4 122 44 165 1.53e-27 111
MS.gene00555.t1 MTR_7g011170 65.278 72 25 0 4 75 45 116 2.12e-27 108
MS.gene00555.t1 MTR_8g017350 61.842 76 29 0 2 77 44 119 3.04e-27 111
MS.gene00555.t1 MTR_5g078140 63.514 74 27 0 2 75 43 116 3.25e-27 108
MS.gene00555.t1 MTR_1g073170 56.180 89 37 1 2 90 51 137 3.97e-27 106
MS.gene00555.t1 MTR_7g111290 70.149 67 20 0 2 68 43 109 4.56e-27 108
MS.gene00555.t1 MTR_1g045610 57.303 89 36 1 2 90 52 138 4.78e-27 106
MS.gene00555.t1 MTR_3g065440 65.278 72 25 0 4 75 45 116 5.70e-27 107
MS.gene00555.t1 MTR_8g017390 59.211 76 31 0 2 77 44 119 6.26e-27 109
MS.gene00555.t1 MTR_8g017540 60.000 75 30 0 2 76 89 163 6.72e-27 108
MS.gene00555.t1 MTR_8g017440 59.459 74 30 0 2 75 43 116 8.28e-27 107
MS.gene00555.t1 MTR_7g010210 65.278 72 25 0 4 75 45 116 1.22e-26 107
MS.gene00555.t1 MTR_7g010210 65.278 72 25 0 4 75 45 116 1.28e-26 105
MS.gene00555.t1 MTR_5g079290 58.667 75 31 0 4 78 50 124 1.92e-26 105
MS.gene00555.t1 MTR_0008s0280 59.722 72 29 0 2 73 43 114 2.19e-26 103
MS.gene00555.t1 MTR_6g012690 63.889 72 26 0 4 75 45 116 2.44e-26 106
MS.gene00555.t1 MTR_7g035075 39.623 159 90 3 4 161 47 200 2.51e-26 103
MS.gene00555.t1 MTR_2g034790 61.111 72 28 0 4 75 45 116 3.09e-26 105
MS.gene00555.t1 MTR_7g017260 49.462 93 47 0 4 96 60 152 4.39e-26 104
MS.gene00555.t1 MTR_6g055910 60.811 74 29 0 1 74 15 88 5.41e-26 103
MS.gene00555.t1 MTR_8g017500 58.108 74 31 0 2 75 43 116 6.09e-26 105
MS.gene00555.t1 MTR_4g121460 59.722 72 29 0 4 75 45 116 6.34e-26 105
MS.gene00555.t1 MTR_0140s0030 61.111 72 28 0 4 75 46 117 1.11e-25 104
MS.gene00555.t1 MTR_0489s0020 61.111 72 28 0 4 75 46 117 1.11e-25 104
MS.gene00555.t1 MTR_3g039990 62.500 72 27 0 4 75 46 117 1.30e-25 103
MS.gene00555.t1 MTR_1g100667 54.217 83 38 0 4 86 46 128 1.37e-25 103
MS.gene00555.t1 MTR_5g010020 63.636 66 24 0 4 69 45 110 1.37e-25 104
MS.gene00555.t1 MTR_5g079220 58.667 75 31 0 4 78 54 128 2.69e-25 102
MS.gene00555.t1 MTR_5g078910 58.904 73 30 0 4 76 40 112 3.11e-25 102
MS.gene00555.t1 MTR_6g055910 63.380 71 26 0 4 74 47 117 3.96e-25 102
MS.gene00555.t1 MTR_5g042030 59.722 72 29 0 5 76 41 112 4.32e-25 102
MS.gene00555.t1 MTR_7g087130 62.500 72 27 0 4 75 45 116 5.70e-25 102
MS.gene00555.t1 MTR_4g063100 56.757 74 32 0 1 74 8 81 7.20e-25 100
MS.gene00555.t1 MTR_6g006030 59.722 72 29 0 4 75 47 118 7.84e-25 99.4
MS.gene00555.t1 MTR_1g086530 63.380 71 26 0 4 74 66 136 1.04e-24 100
MS.gene00555.t1 MTR_2g067420 63.636 66 24 0 4 69 47 112 1.57e-24 101
MS.gene00555.t1 MTR_5g079120 57.333 75 32 0 4 78 94 168 1.63e-24 100
MS.gene00555.t1 MTR_0001s0360 58.108 74 31 0 5 78 41 114 1.93e-24 99.4
MS.gene00555.t1 MTR_2g096380 54.217 83 38 0 2 84 18 100 1.95e-24 98.6
MS.gene00555.t1 MTR_1g021230 59.155 71 29 0 4 74 90 160 2.78e-24 102
MS.gene00555.t1 MTR_5g078950 62.319 69 26 0 4 72 40 108 3.32e-24 99.0
MS.gene00555.t1 MTR_1g110460 60.563 71 28 0 4 74 59 129 3.59e-24 100
MS.gene00555.t1 MTR_8g060940 63.235 68 25 0 4 71 40 107 3.98e-24 98.6
MS.gene00555.t1 MTR_4g063100 57.534 73 31 0 2 74 38 110 5.35e-24 98.2
MS.gene00555.t1 MTR_5g078860 56.000 75 33 0 4 78 40 114 6.62e-24 99.4
MS.gene00555.t1 MTR_2g088170 66.197 71 24 0 4 74 62 132 7.02e-24 101
MS.gene00555.t1 MTR_2g096380 55.696 79 35 0 2 80 37 115 8.89e-24 97.4
MS.gene00555.t1 MTR_3g045430 61.111 72 28 0 4 75 46 117 9.96e-24 98.6
MS.gene00555.t1 MTR_6g012180 63.636 66 24 0 4 69 45 110 1.02e-23 99.0
MS.gene00555.t1 MTR_5g078800 57.534 73 31 0 4 76 40 112 1.96e-23 97.1
MS.gene00555.t1 MTR_1g086510 60.563 71 28 0 4 74 54 124 2.08e-23 97.1
MS.gene00555.t1 MTR_5g078930 52.439 82 39 0 4 85 42 123 2.52e-23 95.5
MS.gene00555.t1 MTR_5g088080 59.155 71 28 1 4 73 45 115 4.30e-23 96.3
MS.gene00555.t1 MTR_5g088150 59.155 71 28 1 4 73 45 115 4.30e-23 96.3
MS.gene00555.t1 MTR_5g488210 59.155 71 28 1 4 73 45 115 4.30e-23 96.3
MS.gene00555.t1 MTR_5g088640 59.155 71 28 1 4 73 45 115 4.85e-23 96.3
MS.gene00555.t1 MTR_5g488170 59.155 71 28 1 4 73 45 115 5.16e-23 95.5
MS.gene00555.t1 MTR_4g128190 38.971 136 72 4 4 129 31 165 7.65e-23 94.7
MS.gene00555.t1 MTR_0247s0040 57.971 69 29 0 4 72 40 108 1.85e-22 92.4
MS.gene00555.t1 MTR_1g083630 57.143 70 30 0 5 74 46 115 2.13e-22 97.4
MS.gene00555.t1 MTR_5g062790 57.746 71 29 1 4 73 42 112 3.76e-22 94.4
MS.gene00555.t1 MTR_7g109320 63.889 72 26 0 4 75 45 116 5.13e-22 94.7
MS.gene00555.t1 MTR_0193s0090 46.512 86 46 0 4 89 40 125 5.32e-22 91.7
MS.gene00555.t1 MTR_8g006470 57.143 70 29 1 5 73 44 113 7.30e-21 90.5
MS.gene00555.t1 MTR_4g094982 49.425 87 41 1 7 90 38 124 2.25e-20 89.0
MS.gene00555.t1 MTR_4g019370 40.187 107 63 1 7 112 71 177 3.01e-20 89.7
MS.gene00555.t1 MTR_2g033170 62.857 70 26 0 4 73 57 126 3.24e-20 89.4
MS.gene00555.t1 MTR_4g029540 40.777 103 59 2 5 106 44 145 1.48e-19 87.0
MS.gene00555.t1 MTR_5g088610 41.667 120 55 3 4 113 42 156 1.91e-19 87.4
MS.gene00555.t1 MTR_4g123040 58.974 78 30 1 4 81 57 132 4.43e-19 85.9
MS.gene00555.t1 MTR_3g101290 52.941 68 32 0 7 74 70 137 5.35e-19 84.0
MS.gene00555.t1 MTR_5g016510 52.941 68 32 0 7 74 38 105 1.23e-18 84.7
MS.gene00555.t1 MTR_5g070020 42.353 85 47 1 7 91 155 237 2.54e-18 84.3
MS.gene00555.t1 MTR_3g077650 40.860 93 48 1 7 99 214 299 1.14e-17 83.2
MS.gene00555.t1 MTR_7g451170 38.462 91 49 1 7 97 224 307 1.82e-17 82.4
MS.gene00555.t1 MTR_7g035350 42.683 82 46 1 7 88 258 338 7.56e-17 80.9
MS.gene00555.t1 MTR_7g037260 41.860 86 41 1 7 92 178 254 7.67e-17 80.1
MS.gene00555.t1 MTR_4g105660 38.710 93 50 1 7 99 213 298 8.30e-17 80.5
MS.gene00555.t1 MTR_3g463400 44.444 81 43 1 7 87 166 244 1.55e-16 79.7
MS.gene00555.t1 MTR_4g082040 33.333 132 69 3 7 138 138 250 1.97e-16 79.3
MS.gene00555.t1 MTR_5g082910 52.308 65 31 0 7 71 52 116 2.93e-16 77.8
MS.gene00555.t1 MTR_5g049190 50.820 61 30 0 7 67 52 112 9.78e-16 75.5
MS.gene00555.t1 MTR_1g057980 50.794 63 31 0 7 69 113 175 1.15e-15 76.3
MS.gene00555.t1 MTR_6g015455 50.000 68 34 0 7 74 38 105 1.32e-15 77.8
MS.gene00555.t1 MTR_5g041570 37.500 96 56 1 7 102 167 258 1.91e-15 76.6
MS.gene00555.t1 MTR_4g088015 37.363 91 50 1 7 97 254 337 2.10e-15 76.6
MS.gene00555.t1 MTR_6g074860 44.776 67 37 0 7 73 37 103 2.21e-15 74.3
MS.gene00555.t1 MTR_1g085880 53.521 71 32 1 4 73 45 115 6.44e-15 72.0
MS.gene00555.t1 MTR_5g010650 54.839 62 28 0 7 68 143 204 7.96e-15 74.7
MS.gene00555.t1 MTR_7g061330 49.275 69 35 0 7 75 146 214 1.05e-14 74.7
MS.gene00555.t1 MTR_7g461410 49.275 69 35 0 7 75 146 214 1.05e-14 74.7
MS.gene00555.t1 MTR_7g450950 37.500 88 47 1 7 94 190 269 1.25e-14 73.6
MS.gene00555.t1 MTR_7g061330 49.275 69 35 0 7 75 110 178 1.27e-14 74.3
MS.gene00555.t1 MTR_1g085770 53.521 71 32 1 4 73 45 115 1.63e-14 72.8
MS.gene00555.t1 MTR_7g061550 33.553 152 80 5 5 147 41 180 3.54e-14 72.4
MS.gene00555.t1 MTR_6g027340 42.466 73 39 1 7 76 49 121 5.09e-14 70.1
MS.gene00555.t1 MTR_3g110028 44.928 69 38 0 7 75 118 186 1.27e-13 71.6
MS.gene00555.t1 MTR_6g027360 42.466 73 39 1 7 76 111 183 1.78e-13 70.1
MS.gene00555.t1 MTR_1g026870 40.449 89 50 1 7 92 118 206 5.33e-13 69.7
MS.gene00555.t1 MTR_5g038910 33.884 121 70 2 7 127 59 169 1.12e-12 68.2
MS.gene00555.t1 MTR_7g086960 41.667 84 44 1 7 90 122 200 1.22e-12 67.8
MS.gene00555.t1 MTR_5g038910 33.884 121 70 2 7 127 59 169 1.31e-12 68.2
MS.gene00555.t1 MTR_6g027370 44.118 68 38 0 7 74 132 199 1.88e-12 67.4
MS.gene00555.t1 MTR_7g037130 39.535 86 43 2 7 92 178 254 1.93e-12 67.4
MS.gene00555.t1 MTR_3g089045 44.118 68 38 0 7 74 49 116 1.86e-11 63.9
MS.gene00555.t1 MTR_5g007300 56.818 44 19 0 4 47 97 140 2.28e-11 60.8
MS.gene00555.t1 MTR_8g468380 41.176 68 40 0 7 74 55 122 2.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00555.t1 AT3G49690 53.086 162 64 3 3 163 45 195 1.07e-48 164
MS.gene00555.t1 AT5G65790 86.747 83 11 0 3 85 45 127 4.01e-48 165
MS.gene00555.t1 AT4G37780 84.524 84 13 0 3 86 45 128 3.09e-46 158
MS.gene00555.t1 AT5G57620 83.529 85 14 0 3 87 45 129 5.10e-46 158
MS.gene00555.t1 AT5G23000 81.579 76 14 0 1 76 43 118 6.99e-39 139
MS.gene00555.t1 AT2G36890 81.081 74 14 0 4 77 46 119 2.24e-38 137
MS.gene00555.t1 AT2G36890 81.081 74 14 0 4 77 87 160 3.16e-38 138
MS.gene00555.t1 AT5G56110 74.324 74 19 0 4 77 45 118 5.68e-34 126
MS.gene00555.t1 AT5G14750 49.206 126 57 1 4 129 49 167 3.48e-33 121
MS.gene00555.t1 AT5G61420 40.606 165 87 1 4 168 45 198 1.03e-32 124
MS.gene00555.t1 AT1G22640 47.899 119 58 1 4 122 45 159 8.47e-32 119
MS.gene00555.t1 AT5G14750 50.893 112 48 1 7 118 18 122 2.15e-31 115
MS.gene00555.t1 AT4G01680 68.000 75 24 0 1 75 54 128 4.47e-31 119
MS.gene00555.t1 AT1G57560 66.234 77 26 0 2 78 43 119 4.76e-31 117
MS.gene00555.t1 AT1G57560 66.234 77 26 0 2 78 43 119 4.82e-31 118
MS.gene00555.t1 AT4G01680 70.833 72 21 0 4 75 45 116 4.96e-31 116
MS.gene00555.t1 AT5G26660 64.474 76 27 0 3 78 13 88 6.58e-31 118
MS.gene00555.t1 AT2G16720 66.667 75 25 0 4 78 45 119 7.97e-31 117
MS.gene00555.t1 AT4G38620 57.778 90 32 1 4 87 45 134 8.06e-31 117
MS.gene00555.t1 AT4G09460 67.123 73 24 0 4 76 45 117 1.27e-30 115
MS.gene00555.t1 AT4G01680 70.833 72 21 0 4 75 45 116 1.68e-30 117
MS.gene00555.t1 AT5G62320 58.889 90 31 1 4 87 53 142 1.71e-30 115
MS.gene00555.t1 AT4G34990 66.667 75 25 0 4 78 45 119 2.69e-30 115
MS.gene00555.t1 AT3G27920 61.842 76 29 0 4 79 47 122 3.33e-30 114
MS.gene00555.t1 AT5G26660 63.636 77 28 0 2 78 43 119 5.54e-30 116
MS.gene00555.t1 AT5G65230 64.000 75 27 0 2 76 43 117 6.35e-30 115
MS.gene00555.t1 AT1G09540 66.216 74 25 0 2 75 43 116 9.45e-30 116
MS.gene00555.t1 AT1G35515 63.158 76 28 0 3 78 44 119 1.77e-29 112
MS.gene00555.t1 AT5G16770 67.123 73 24 0 4 76 45 117 1.79e-29 114
MS.gene00555.t1 AT5G16770 67.123 73 24 0 4 76 45 117 1.79e-29 114
MS.gene00555.t1 AT3G13540 64.384 73 26 0 4 76 56 128 2.25e-29 112
MS.gene00555.t1 AT5G16770 67.123 73 24 0 4 76 45 117 2.66e-29 114
MS.gene00555.t1 AT5G16770 67.123 73 24 0 4 76 45 117 2.66e-29 114
MS.gene00555.t1 AT5G40330 62.338 77 28 1 4 79 45 121 3.41e-29 111
MS.gene00555.t1 AT5G07690 66.667 75 25 0 4 78 45 119 6.38e-29 113
MS.gene00555.t1 AT3G61250 62.667 75 28 0 2 76 43 117 7.75e-29 112
MS.gene00555.t1 AT4G21440 65.753 73 25 0 4 76 45 117 8.56e-29 113
MS.gene00555.t1 AT5G07700 65.753 73 25 0 4 76 45 117 8.71e-29 113
MS.gene00555.t1 AT5G07700 65.753 73 25 0 4 76 45 117 8.71e-29 113
MS.gene00555.t1 AT3G23250 65.278 72 25 0 4 75 45 116 1.03e-28 111
MS.gene00555.t1 AT5G10280 64.000 75 27 0 2 76 43 117 1.03e-28 112
MS.gene00555.t1 AT4G12350 64.000 75 27 0 2 76 43 117 1.07e-28 111
MS.gene00555.t1 AT4G05100 65.753 73 25 0 4 76 46 118 1.16e-28 112
MS.gene00555.t1 AT3G62610 61.538 78 30 0 4 81 45 122 1.22e-28 112
MS.gene00555.t1 AT5G12870 63.889 72 26 0 4 75 51 122 1.60e-28 111
MS.gene00555.t1 AT5G54230 67.123 73 24 0 4 76 45 117 1.60e-28 112
MS.gene00555.t1 AT1G16490 50.000 114 54 1 4 117 47 157 1.83e-28 110
MS.gene00555.t1 AT1G63910 57.831 83 35 0 4 86 45 127 1.96e-28 112
MS.gene00555.t1 AT1G06180 58.824 85 33 1 2 86 43 125 2.35e-28 109
MS.gene00555.t1 AT3G12720 58.442 77 32 0 2 78 53 129 2.84e-28 110
MS.gene00555.t1 AT1G18570 65.333 75 26 0 4 78 46 120 3.93e-28 111
MS.gene00555.t1 AT5G55020 65.278 72 25 0 4 75 59 130 4.46e-28 113
MS.gene00555.t1 AT5G60890 66.667 72 24 0 4 75 45 116 4.62e-28 110
MS.gene00555.t1 AT4G28110 63.014 73 27 0 4 76 45 117 5.14e-28 109
MS.gene00555.t1 AT3G02940 63.014 73 27 0 4 76 45 117 5.57e-28 110
MS.gene00555.t1 AT2G31180 65.278 72 25 0 4 75 45 116 6.15e-28 108
MS.gene00555.t1 AT3G02940 63.014 73 27 0 4 76 45 117 7.51e-28 110
MS.gene00555.t1 AT3G02940 63.014 73 27 0 4 76 45 117 7.51e-28 110
MS.gene00555.t1 AT4G22680 61.333 75 29 0 2 76 43 117 7.59e-28 108
MS.gene00555.t1 AT4G17785 61.333 75 29 0 2 76 44 118 7.59e-28 110
MS.gene00555.t1 AT5G06100 65.714 70 24 0 5 74 66 135 7.83e-28 112
MS.gene00555.t1 AT4G17785 61.333 75 29 0 2 76 44 118 8.44e-28 110
MS.gene00555.t1 AT3G47600 51.351 111 49 1 3 113 38 143 9.91e-28 110
MS.gene00555.t1 AT5G35550 49.020 102 50 1 2 101 48 149 1.22e-27 108
MS.gene00555.t1 AT2G32460 63.380 71 26 0 4 74 51 121 1.35e-27 112
MS.gene00555.t1 AT5G35550 42.754 138 64 3 4 139 47 171 1.38e-27 108
MS.gene00555.t1 AT2G32460 63.380 71 26 0 4 74 39 109 1.48e-27 111
MS.gene00555.t1 AT5G06100 65.714 70 24 0 5 74 66 135 1.56e-27 112
MS.gene00555.t1 AT5G06100 65.714 70 24 0 5 74 66 135 1.56e-27 112
MS.gene00555.t1 AT5G06100 65.714 70 24 0 5 74 66 135 1.56e-27 112
MS.gene00555.t1 AT5G06100 65.714 70 24 0 5 74 66 135 1.56e-27 112
MS.gene00555.t1 AT3G13890 60.811 74 29 0 4 77 45 118 1.87e-27 109
MS.gene00555.t1 AT3G28470 51.724 116 47 2 4 110 45 160 2.23e-27 108
MS.gene00555.t1 AT4G26930 65.217 69 24 0 5 73 53 121 2.62e-27 110
MS.gene00555.t1 AT1G79180 65.278 72 25 0 4 75 47 118 2.94e-27 108
MS.gene00555.t1 AT3G01140 63.014 73 27 0 4 76 45 117 3.54e-27 108
MS.gene00555.t1 AT3G27810 60.000 75 30 0 1 75 1 75 3.62e-27 104
MS.gene00555.t1 AT5G15310 63.014 73 27 0 4 76 45 117 3.79e-27 106
MS.gene00555.t1 AT3G12820 59.740 77 31 0 2 78 45 121 3.80e-27 106
MS.gene00555.t1 AT3G08500 65.278 72 25 0 4 75 63 134 4.47e-27 108
MS.gene00555.t1 AT3G47600 50.909 110 49 1 4 113 45 149 5.03e-27 108
MS.gene00555.t1 AT1G79180 65.278 72 25 0 4 75 80 151 6.01e-27 107
MS.gene00555.t1 AT5G62470 65.278 72 25 0 4 75 45 116 6.89e-27 108
MS.gene00555.t1 AT5G15310 63.014 73 27 0 4 76 45 117 7.33e-27 107
MS.gene00555.t1 AT2G47460 62.500 72 27 0 4 75 45 116 7.52e-27 108
MS.gene00555.t1 AT3G01140 63.014 73 27 0 4 76 88 160 8.15e-27 108
MS.gene00555.t1 AT5G15310 63.014 73 27 0 4 76 45 117 8.36e-27 107
MS.gene00555.t1 AT3G11440 61.429 70 27 0 5 74 75 144 8.95e-27 109
MS.gene00555.t1 AT5G16600 52.525 99 35 1 4 90 45 143 1.08e-26 107
MS.gene00555.t1 AT5G14340 60.811 74 29 0 2 75 55 128 1.27e-26 105
MS.gene00555.t1 AT5G52600 63.380 71 26 0 4 74 45 115 1.62e-26 103
MS.gene00555.t1 AT3G13890 61.111 72 28 0 5 76 55 126 1.70e-26 107
MS.gene00555.t1 AT3G12820 61.111 72 28 0 7 78 2 73 1.82e-26 103
MS.gene00555.t1 AT1G56160 60.811 74 29 0 2 75 45 118 1.83e-26 105
MS.gene00555.t1 AT3G11440 61.429 70 27 0 5 74 75 144 1.98e-26 108
MS.gene00555.t1 AT3G11440 61.429 70 27 0 5 74 75 144 1.98e-26 108
MS.gene00555.t1 AT3G11440 61.429 70 27 0 5 74 75 144 1.98e-26 108
MS.gene00555.t1 AT3G01530 58.333 72 30 0 4 75 58 129 2.78e-26 103
MS.gene00555.t1 AT3G28910 65.278 72 25 0 4 75 45 116 3.17e-26 105
MS.gene00555.t1 AT1G34670 63.889 72 26 0 5 76 46 117 4.36e-26 106
MS.gene00555.t1 AT1G66230 63.889 72 26 0 4 75 45 116 4.95e-26 104
MS.gene00555.t1 AT1G08810 45.690 116 62 1 4 119 45 159 5.12e-26 104
MS.gene00555.t1 AT1G74650 63.014 73 27 0 4 76 45 117 5.78e-26 105
MS.gene00555.t1 AT1G74430 60.000 75 30 0 4 78 45 119 6.91e-26 103
MS.gene00555.t1 AT2G26960 60.000 70 28 0 4 73 53 122 8.89e-26 106
MS.gene00555.t1 AT3G27810 61.111 72 28 0 4 75 53 124 1.45e-25 102
MS.gene00555.t1 AT1G74080 60.000 75 30 0 4 78 45 119 1.48e-25 104
MS.gene00555.t1 AT5G40350 56.757 74 32 0 3 76 4 77 2.15e-25 99.8
MS.gene00555.t1 AT5G49330 61.111 72 28 0 4 75 45 116 2.99e-25 103
MS.gene00555.t1 AT5G62470 65.217 69 24 0 7 75 47 115 3.64e-25 103
MS.gene00555.t1 AT3G53200 62.500 72 27 0 3 74 8 79 3.84e-25 100
MS.gene00555.t1 AT3G24310 55.056 89 38 1 2 90 49 135 3.99e-25 101
MS.gene00555.t1 AT3G53200 52.475 101 31 2 1 94 39 129 4.95e-25 100
MS.gene00555.t1 AT4G13480 63.014 73 27 0 2 74 37 109 5.37e-25 101
MS.gene00555.t1 AT5G52260 63.158 76 28 0 1 76 42 117 5.56e-25 101
MS.gene00555.t1 AT5G40350 57.534 73 31 0 4 76 50 122 1.10e-24 99.4
MS.gene00555.t1 AT1G66380 61.111 72 28 0 3 74 7 78 2.43e-24 95.1
MS.gene00555.t1 AT5G59780 55.128 78 35 0 3 80 19 96 2.68e-24 98.2
MS.gene00555.t1 AT5G59780 55.696 79 35 0 2 80 39 117 2.87e-24 98.6
MS.gene00555.t1 AT4G25560 61.644 73 28 0 4 76 43 115 3.12e-24 99.8
MS.gene00555.t1 AT3G46130 55.128 78 35 0 3 80 19 96 3.91e-24 98.2
MS.gene00555.t1 AT3G46130 55.696 79 35 0 2 80 40 118 4.27e-24 98.6
MS.gene00555.t1 AT3G46130 55.844 77 34 0 4 80 10 86 4.45e-24 97.8
MS.gene00555.t1 AT1G66370 59.155 71 29 0 4 74 41 111 4.53e-24 98.6
MS.gene00555.t1 AT3G30210 42.017 119 63 1 4 116 60 178 5.19e-24 99.0
MS.gene00555.t1 AT2G47190 58.974 78 30 1 4 81 53 128 8.11e-24 98.2
MS.gene00555.t1 AT1G25340 60.563 71 28 0 4 74 51 121 9.51e-24 98.2
MS.gene00555.t1 AT3G48920 52.941 85 39 1 4 87 51 135 1.15e-23 97.8
MS.gene00555.t1 AT1G66380 61.972 71 27 0 4 74 41 111 1.74e-23 94.0
MS.gene00555.t1 AT1G48000 62.667 75 26 1 4 76 65 139 2.10e-23 96.7
MS.gene00555.t1 AT1G18710 55.556 72 32 0 4 75 45 116 2.13e-23 97.1
MS.gene00555.t1 AT1G68320 59.155 71 29 0 4 74 52 122 4.05e-23 96.7
MS.gene00555.t1 AT5G14750 43.363 113 57 1 17 129 1 106 3.32e-22 90.5
MS.gene00555.t1 AT5G14750 43.363 113 57 1 17 129 1 106 3.32e-22 90.5
MS.gene00555.t1 AT1G56650 60.563 71 28 0 4 74 41 111 3.34e-22 93.6
MS.gene00555.t1 AT1G22640 42.453 106 57 1 17 122 1 102 4.04e-22 92.0
MS.gene00555.t1 AT1G66390 60.563 71 28 0 4 74 41 111 4.53e-22 93.2
MS.gene00555.t1 AT1G25340 56.944 72 31 0 3 74 45 116 3.08e-21 91.3
MS.gene00555.t1 AT2G26950 35.484 155 77 3 4 135 49 203 3.71e-21 92.8
MS.gene00555.t1 AT1G25340 56.944 72 31 0 3 74 45 116 4.66e-21 91.3
MS.gene00555.t1 AT3G60460 55.714 70 30 1 5 73 45 114 3.21e-20 89.0
MS.gene00555.t1 AT5G49620 62.319 69 26 0 5 73 60 128 9.57e-20 87.8
MS.gene00555.t1 AT3G09230 37.500 128 68 3 7 133 88 204 1.07e-19 88.6
MS.gene00555.t1 AT3G06490 61.429 70 27 0 4 73 52 121 1.09e-19 87.8
MS.gene00555.t1 AT1G18960 46.575 73 37 1 3 75 39 109 1.51e-19 87.4
MS.gene00555.t1 AT1G71030 52.239 67 32 0 10 76 5 71 2.42e-19 84.0
MS.gene00555.t1 AT2G39880 57.353 68 29 0 7 74 83 150 2.71e-19 87.4
MS.gene00555.t1 AT1G71030 52.239 67 32 0 10 76 19 85 2.88e-19 84.3
MS.gene00555.t1 AT2G23290 47.727 88 46 0 7 94 46 133 4.86e-19 85.9
MS.gene00555.t1 AT3G23250 59.322 59 24 0 17 75 1 59 5.42e-19 84.3
MS.gene00555.t1 AT2G25230 55.556 63 28 0 7 69 59 121 7.63e-19 84.0
MS.gene00555.t1 AT3G55730 55.882 68 30 0 7 74 89 156 2.92e-18 84.7
MS.gene00555.t1 AT3G27785 42.708 96 45 1 7 102 222 307 3.47e-18 84.7
MS.gene00555.t1 AT5G67300 52.000 75 35 1 7 80 39 113 3.62e-18 83.2
MS.gene00555.t1 AT3G50060 52.113 71 34 0 7 77 39 109 3.69e-18 83.2
MS.gene00555.t1 AT5G40360 36.697 109 69 0 7 115 191 299 4.92e-18 83.6
MS.gene00555.t1 AT5G58850 45.455 77 41 1 7 82 138 214 4.97e-18 84.3
MS.gene00555.t1 AT4G37260 52.941 68 32 0 7 74 46 113 8.29e-18 82.4
MS.gene00555.t1 AT4G18770 47.826 69 36 0 7 75 250 318 2.69e-17 82.0
MS.gene00555.t1 AT5G49620 51.163 86 22 2 5 73 60 142 1.72e-16 79.0
MS.gene00555.t1 AT5G40430 50.794 63 31 0 7 69 86 148 6.74e-16 76.3
MS.gene00555.t1 AT5G17800 40.000 80 48 0 5 84 124 203 8.51e-16 77.0
MS.gene00555.t1 AT1G17950 40.000 90 50 2 7 96 38 123 2.20e-15 74.7
MS.gene00555.t1 AT3G09370 39.623 106 61 1 7 109 163 268 4.36e-15 75.9
MS.gene00555.t1 AT1G69560 43.478 69 39 0 7 75 140 208 4.54e-15 74.7
MS.gene00555.t1 AT3G09370 39.623 106 61 1 7 109 168 273 4.64e-15 75.5
MS.gene00555.t1 AT3G09370 39.623 106 61 1 7 109 176 281 4.78e-15 75.5
MS.gene00555.t1 AT1G26780 44.118 68 38 0 7 74 131 198 5.89e-15 73.9
MS.gene00555.t1 AT1G69560 43.478 69 39 0 7 75 156 224 5.99e-15 74.7
MS.gene00555.t1 AT1G26780 44.118 68 38 0 7 74 131 198 6.31e-15 74.7
MS.gene00555.t1 AT5G02320 47.826 69 36 0 7 75 160 228 7.51e-15 75.1
MS.gene00555.t1 AT5G02320 47.826 69 36 0 7 75 160 228 7.51e-15 75.1
MS.gene00555.t1 AT5G02320 47.826 69 36 0 7 75 100 168 7.90e-15 75.1
MS.gene00555.t1 AT3G29020 42.029 69 40 0 7 75 100 168 1.05e-14 73.6
MS.gene00555.t1 AT3G29020 42.029 69 40 0 7 75 98 166 1.45e-14 72.0
MS.gene00555.t1 AT5G11050 29.299 157 96 4 7 161 138 281 4.02e-14 72.8
MS.gene00555.t1 AT4G33450 44.118 68 38 0 7 74 52 119 4.84e-13 68.2
MS.gene00555.t1 AT1G73410 47.059 68 36 0 7 74 39 106 4.84e-13 67.8
MS.gene00555.t1 AT5G11510 42.029 69 40 0 7 75 114 182 9.46e-13 68.9
MS.gene00555.t1 AT5G11510 42.029 69 40 0 7 75 114 182 9.46e-13 68.9
MS.gene00555.t1 AT5G11510 42.029 69 40 0 7 75 114 182 9.46e-13 68.9
MS.gene00555.t1 AT5G61420 32.558 129 76 1 40 168 2 119 9.60e-13 67.8
MS.gene00555.t1 AT4G00540 44.928 69 38 0 7 75 139 207 1.01e-12 68.6
MS.gene00555.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.15e-12 68.6
MS.gene00555.t1 AT1G73410 47.059 68 36 0 7 74 39 106 1.20e-12 66.2
MS.gene00555.t1 AT5G11510 42.029 69 40 0 7 75 114 182 1.21e-12 68.6
MS.gene00555.t1 AT4G00540 44.928 69 38 0 7 75 137 205 1.29e-12 68.2
MS.gene00555.t1 AT5G11510 42.029 69 40 0 7 75 114 182 1.32e-12 68.6
MS.gene00555.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.36e-12 68.2
MS.gene00555.t1 AT2G37630 34.286 105 59 1 5 109 38 132 1.46e-12 67.8
MS.gene00555.t1 AT2G02820 42.466 73 40 1 7 79 63 133 1.66e-12 67.4
MS.gene00555.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.74e-12 68.2
MS.gene00555.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.78e-12 68.2
MS.gene00555.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.78e-12 68.2
MS.gene00555.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.78e-12 68.2
MS.gene00555.t1 AT4G32730 42.029 69 40 0 7 75 120 188 1.78e-12 68.2
MS.gene00555.t1 AT1G14350 42.466 73 40 1 7 79 58 128 2.24e-12 67.4
MS.gene00555.t1 AT1G14350 42.466 73 40 1 7 79 58 128 2.24e-12 67.4
MS.gene00555.t1 AT4G25560 56.250 48 21 0 29 76 2 49 5.68e-11 61.6
MS.gene00555.t1 AT1G22640 37.209 86 45 2 37 122 11 87 9.82e-11 60.5

Find 56 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATTTAACCTTGGTATT+TGG 0.131923 1.4:+5566779 None:intergenic
TACAAGGTTCTAGTATTAAT+TGG 0.175164 1.4:-5566842 MS.gene00555:CDS
CTTGATCATTGAAGCCTTGT+TGG 0.313961 1.4:+5567219 None:intergenic
AACCACCATGTTTGAGATTA+GGG 0.322373 1.4:+5567875 None:intergenic
CAACCATCAAAAGTAGTATT+AGG 0.326180 1.4:+5567140 None:intergenic
CTTGTTGCTGCTGATCTTTA+CGG 0.335855 1.4:+5567423 None:intergenic
ACAAGGTTCTAGTATTAATT+GGG 0.336603 1.4:-5566841 MS.gene00555:CDS
AAACCACCATGTTTGAGATT+AGG 0.366318 1.4:+5567874 None:intergenic
AATTATCCACCAAGATTTGA+TGG 0.368986 1.4:-5566915 MS.gene00555:CDS
CATTCCAGAGATTGATCATA+TGG 0.369915 1.4:-5566946 MS.gene00555:CDS
ATAATGACATAAAGAACTAT+TGG 0.370430 1.4:-5567481 MS.gene00555:CDS
TTGGTTGTGGTTGTTATCAT+TGG 0.385791 1.4:+5567028 None:intergenic
GATAATGTTATCTTCTTCTT+CGG 0.391795 1.4:+5567849 None:intergenic
ATGTCATTATCAGTTCTTCC+TGG 0.397545 1.4:+5567494 None:intergenic
TTCTTGAACCAAATTTGATA+AGG 0.407035 1.4:+5567322 None:intergenic
TGCATGACATGTGGTAAATA+TGG 0.407502 1.4:+5567296 None:intergenic
AGAAAACTTCTTATGAAGCT+TGG 0.411643 1.4:-5567188 MS.gene00555:CDS
TGCAGCCTTTACATTAGTAT+TGG 0.421799 1.4:-5567826 MS.gene00555:CDS
GCTCGTAATAGAGGCAATAA+TGG 0.432154 1.4:-5567401 MS.gene00555:CDS
CAGCAACAAGCTCGTAATAG+AGG 0.461617 1.4:-5567410 MS.gene00555:CDS
AATTCCAACCCATCAAATCT+TGG 0.462721 1.4:+5566906 None:intergenic
TCCACCAAGATTTGATGGGT+TGG 0.464644 1.4:-5566910 MS.gene00555:CDS
CATTTGTTGCGAATTGTACT+TGG 0.466808 1.4:+5567009 None:intergenic
AACATTGATGGTAGTGGAGG+TGG 0.467582 1.4:+5567254 None:intergenic
CAAGTACAATTCGCAACAAA+TGG 0.468082 1.4:-5567008 MS.gene00555:CDS
TTGCGAATTGTACTTGGTTG+TGG 0.482944 1.4:+5567015 None:intergenic
AAACTTCTTATGAAGCTTGG+AGG 0.489488 1.4:-5567185 MS.gene00555:CDS
TTTACATTAGTATTGGAAGC+AGG 0.496580 1.4:-5567819 MS.gene00555:intron
GATACCATATGATCAATCTC+TGG 0.503391 1.4:+5566942 None:intergenic
TTTGTGTATGACAACATTGA+TGG 0.508144 1.4:+5567242 None:intergenic
TGCTTCCAATACTAATGTAA+AGG 0.512738 1.4:+5567821 None:intergenic
GTGGAAAGAGTTGTCGTCTC+CGG 0.522056 1.4:-5567915 MS.gene00555:CDS
CACAAATCACAATTTAACCT+TGG 0.527729 1.4:+5566772 None:intergenic
CATTGATGGTAGTGGAGGTG+GGG 0.533607 1.4:+5567256 None:intergenic
ACATTGATGGTAGTGGAGGT+GGG 0.534119 1.4:+5567255 None:intergenic
ATAATTGCAGCTCAATTGCC+AGG 0.552173 1.4:-5567512 MS.gene00555:CDS
ATTATCCACCAAGATTTGAT+GGG 0.556403 1.4:-5566914 MS.gene00555:CDS
TATGACAACATTGATGGTAG+TGG 0.558740 1.4:+5567248 None:intergenic
ATTGATGGTAGTGGAGGTGG+GGG 0.560501 1.4:+5567257 None:intergenic
GGCGAAGATAGTTTAGCCAC+CGG 0.569935 1.4:+5567896 None:intergenic
TAAAGAACTATTGGAATACA+AGG 0.580554 1.4:-5567472 MS.gene00555:CDS
AAGATGATGATAACTTGAAG+TGG 0.584448 1.4:+5566809 None:intergenic
CTTCTTGATTCCAAATACCA+AGG 0.584605 1.4:-5566789 MS.gene00555:CDS
TCCAACCCATCAAATCTTGG+TGG 0.591459 1.4:+5566909 None:intergenic
ATTGATAATAATAAGATACA+AGG 0.601954 1.4:-5566858 MS.gene00555:CDS
AGTTTATGATCAAGAACATG+TGG 0.602665 1.4:-5567075 MS.gene00555:CDS
GAAAGAGTTGTCGTCTCCGG+TGG 0.603936 1.4:-5567912 MS.gene00555:CDS
CTTCGCCCTAATCTCAAACA+TGG 0.609085 1.4:-5567880 MS.gene00555:CDS
GACTCGGTGCAAGAAGAGCA+AGG 0.613143 1.4:-5566975 MS.gene00555:CDS
CAAGGTTCTAGTATTAATTG+GGG 0.621220 1.4:-5566840 MS.gene00555:CDS
CGCCCTAATCTCAAACATGG+TGG 0.637157 1.4:-5567877 MS.gene00555:CDS
TTGTCATACACAAACCAACA+AGG 0.660089 1.4:-5567233 MS.gene00555:CDS
GTTTATGATCAAGAACATGT+GGG 0.665568 1.4:-5567074 MS.gene00555:CDS
AAATGGTCAATACTTTGACT+CGG 0.679619 1.4:-5566991 MS.gene00555:CDS
GACAACATTGATGGTAGTGG+AGG 0.681316 1.4:+5567251 None:intergenic
AGCAAAGGTTGCATGACATG+TGG 0.714384 1.4:+5567287 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATTCAAACTAT+TGG + chr1.4:5567101-5567120 None:intergenic 10.0%
!!! ATTGATAATAATAAGATACA+AGG - chr1.4:5567864-5567883 MS.gene00555:CDS 15.0%
!! ACAAAAAGTAACATATCATA+TGG + chr1.4:5567068-5567087 None:intergenic 20.0%
!! ATAATGACATAAAGAACTAT+TGG - chr1.4:5567241-5567260 MS.gene00555:CDS 20.0%
!! ATCTATAAAATCAAGACATA+AGG + chr1.4:5567024-5567043 None:intergenic 20.0%
!!! TGAATTTTCCTTATCAAATT+TGG - chr1.4:5567392-5567411 MS.gene00555:CDS 20.0%
!!! TGATATGTTACTTTTTGTTT+TGG - chr1.4:5567070-5567089 MS.gene00555:CDS 20.0%
! GATAATGTTATCTTCTTCTT+CGG + chr1.4:5566876-5566895 None:intergenic 25.0%
! TAAAGAACTATTGGAATACA+AGG - chr1.4:5567250-5567269 MS.gene00555:CDS 25.0%
! TTCTTGAACCAAATTTGATA+AGG + chr1.4:5567403-5567422 None:intergenic 25.0%
!! ACAAGGTTCTAGTATTAATT+GGG - chr1.4:5567881-5567900 MS.gene00555:CDS 25.0%
!! TACAAGGTTCTAGTATTAAT+TGG - chr1.4:5567880-5567899 MS.gene00555:CDS 25.0%
AAATGGTCAATACTTTGACT+CGG - chr1.4:5567731-5567750 MS.gene00555:intron 30.0%
AAGATGATGATAACTTGAAG+TGG + chr1.4:5567916-5567935 None:intergenic 30.0%
AATTATCCACCAAGATTTGA+TGG - chr1.4:5567807-5567826 MS.gene00555:intron 30.0%
AGAAAACTTCTTATGAAGCT+TGG - chr1.4:5567534-5567553 MS.gene00555:intron 30.0%
AGTTTATGATCAAGAACATG+TGG - chr1.4:5567647-5567666 MS.gene00555:intron 30.0%
ATTATCCACCAAGATTTGAT+GGG - chr1.4:5567808-5567827 MS.gene00555:intron 30.0%
CAACCATCAAAAGTAGTATT+AGG + chr1.4:5567585-5567604 None:intergenic 30.0%
CTTTCATACCAAACCAAAAA+GGG + chr1.4:5567180-5567199 None:intergenic 30.0%
GTTTATGATCAAGAACATGT+GGG - chr1.4:5567648-5567667 MS.gene00555:intron 30.0%
TGCTTCCAATACTAATGTAA+AGG + chr1.4:5566904-5566923 None:intergenic 30.0%
TTTGTGTATGACAACATTGA+TGG + chr1.4:5567483-5567502 None:intergenic 30.0%
! AAGGTTGAAAAAGAAGCTTT+TGG - chr1.4:5567269-5567288 MS.gene00555:CDS 30.0%
! AGGTTGAAAAAGAAGCTTTT+GGG - chr1.4:5567270-5567289 MS.gene00555:CDS 30.0%
! CAAGGTTCTAGTATTAATTG+GGG - chr1.4:5567882-5567901 MS.gene00555:CDS 30.0%
! TTTACATTAGTATTGGAAGC+AGG - chr1.4:5566903-5566922 MS.gene00555:CDS 30.0%
!! CATCCTAATACTACTTTTGA+TGG - chr1.4:5567579-5567598 MS.gene00555:intron 30.0%
AAACTTCTTATGAAGCTTGG+AGG - chr1.4:5567537-5567556 MS.gene00555:intron 35.0%
AATTCCAACCCATCAAATCT+TGG + chr1.4:5567819-5567838 None:intergenic 35.0%
ATGTCATTATCAGTTCTTCC+TGG + chr1.4:5567231-5567250 None:intergenic 35.0%
CAAGTACAATTCGCAACAAA+TGG - chr1.4:5567714-5567733 MS.gene00555:intron 35.0%
CATTCCAGAGATTGATCATA+TGG - chr1.4:5567776-5567795 MS.gene00555:intron 35.0%
CTTCTTGATTCCAAATACCA+AGG - chr1.4:5567933-5567952 MS.gene00555:CDS 35.0%
GATACCATATGATCAATCTC+TGG + chr1.4:5567783-5567802 None:intergenic 35.0%
GCTTTCATACCAAACCAAAA+AGG + chr1.4:5567181-5567200 None:intergenic 35.0%
TGCAGCCTTTACATTAGTAT+TGG - chr1.4:5566896-5566915 MS.gene00555:CDS 35.0%
TGCATGACATGTGGTAAATA+TGG + chr1.4:5567429-5567448 None:intergenic 35.0%
TTGGTTGTGGTTGTTATCAT+TGG + chr1.4:5567697-5567716 None:intergenic 35.0%
TTGTCATACACAAACCAACA+AGG - chr1.4:5567489-5567508 MS.gene00555:CDS 35.0%
! AAACCACCATGTTTGAGATT+AGG + chr1.4:5566851-5566870 None:intergenic 35.0%
! AACCACCATGTTTGAGATTA+GGG + chr1.4:5566850-5566869 None:intergenic 35.0%
! CATTTGTTGCGAATTGTACT+TGG + chr1.4:5567716-5567735 None:intergenic 35.0%
! GGTTGAAAAAGAAGCTTTTG+GGG - chr1.4:5567271-5567290 MS.gene00555:CDS 35.0%
! TATGACAACATTGATGGTAG+TGG + chr1.4:5567477-5567496 None:intergenic 35.0%
! TGAAAAGTGAAGACCCTTTT+TGG - chr1.4:5567164-5567183 MS.gene00555:CDS 35.0%
!!! GATGGGTTGGAATTCTTTTA+TGG - chr1.4:5567825-5567844 MS.gene00555:CDS 35.0%
!!! TTTTGGTTTGGTATGAAAGC+AGG - chr1.4:5567181-5567200 MS.gene00555:CDS 35.0%
ATAATTGCAGCTCAATTGCC+AGG - chr1.4:5567210-5567229 MS.gene00555:CDS 40.0%
CTTGTTGCTGCTGATCTTTA+CGG + chr1.4:5567302-5567321 None:intergenic 40.0%
GCTCGTAATAGAGGCAATAA+TGG - chr1.4:5567321-5567340 MS.gene00555:CDS 40.0%
TTGCGAATTGTACTTGGTTG+TGG + chr1.4:5567710-5567729 None:intergenic 40.0%
! AAGCTTGGAGGAAGATTTTC+AGG - chr1.4:5567549-5567568 MS.gene00555:intron 40.0%
! CTTGATCATTGAAGCCTTGT+TGG + chr1.4:5567506-5567525 None:intergenic 40.0%
!!! AGTGAAGACCCTTTTTGGTT+TGG - chr1.4:5567169-5567188 MS.gene00555:CDS 40.0%
AGCAAAGGTTGCATGACATG+TGG + chr1.4:5567438-5567457 None:intergenic 45.0%
CAGCAACAAGCTCGTAATAG+AGG - chr1.4:5567312-5567331 MS.gene00555:CDS 45.0%
CTTCGCCCTAATCTCAAACA+TGG - chr1.4:5566842-5566861 MS.gene00555:CDS 45.0%
TCCAACCCATCAAATCTTGG+TGG + chr1.4:5567816-5567835 None:intergenic 45.0%
! TCCACCAAGATTTGATGGGT+TGG - chr1.4:5567812-5567831 MS.gene00555:intron 45.0%
!! AACATTGATGGTAGTGGAGG+TGG + chr1.4:5567471-5567490 None:intergenic 45.0%
!! ACATTGATGGTAGTGGAGGT+GGG + chr1.4:5567470-5567489 None:intergenic 45.0%
!! GACAACATTGATGGTAGTGG+AGG + chr1.4:5567474-5567493 None:intergenic 45.0%
!! TGGTTTGGTATGAAAGCAGG+TGG - chr1.4:5567184-5567203 MS.gene00555:CDS 45.0%
!!! GTTTTAGGCTTGAAGCGTTG+TGG - chr1.4:5566788-5566807 MS.gene00555:CDS 45.0%
CGCCCTAATCTCAAACATGG+TGG - chr1.4:5566845-5566864 MS.gene00555:CDS 50.0%
GGCGAAGATAGTTTAGCCAC+CGG + chr1.4:5566829-5566848 None:intergenic 50.0%
GTGGAAAGAGTTGTCGTCTC+CGG - chr1.4:5566807-5566826 MS.gene00555:CDS 50.0%
!! ATTGATGGTAGTGGAGGTGG+GGG + chr1.4:5567468-5567487 None:intergenic 50.0%
!! CATTGATGGTAGTGGAGGTG+GGG + chr1.4:5567469-5567488 None:intergenic 50.0%
GAAAGAGTTGTCGTCTCCGG+TGG - chr1.4:5566810-5566829 MS.gene00555:CDS 55.0%
!! GACTCGGTGCAAGAAGAGCA+AGG - chr1.4:5567747-5567766 MS.gene00555:intron 55.0%
!! GGTGGGGGTGTTGATAGCAA+AGG + chr1.4:5567453-5567472 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 5566785 5567959 5566785 ID=MS.gene00555
chr1.4 mRNA 5566785 5567959 5566785 ID=MS.gene00555.t1;Parent=MS.gene00555
chr1.4 exon 5567820 5567959 5567820 ID=MS.gene00555.t1.exon1;Parent=MS.gene00555.t1
chr1.4 CDS 5567820 5567959 5567820 ID=cds.MS.gene00555.t1;Parent=MS.gene00555.t1
chr1.4 exon 5566785 5567541 5566785 ID=MS.gene00555.t1.exon2;Parent=MS.gene00555.t1
chr1.4 CDS 5566785 5567541 5566785 ID=cds.MS.gene00555.t1;Parent=MS.gene00555.t1
Gene Sequence

>MS.gene00555

ATGGTTTTAGGCTTGAAGCGTTGTGGAAAGAGTTGTCGTCTCCGGTGGCTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTTTCCGAAGAAGAAGATAACATTATCTGCAGCCTTTACATTAGTATTGGAAGCAGGTACATATACATATGCTTAGTTTCTTGCATAACATAATTGATCATTTGCAACTGCAATTCAAGCTGCATAGATTAAGAATCAAGATGTAATTGTAACCTTATGTCTTGATTTTATAGATACACTACAATTTATATTATAACCATATGATATGTTACTTTTTGTTTTGGTGCAACCAATAGTTTGAATTTTTTTTAACTATCTATATATATAATTATTATATATATAGTATATATAGATGTGAAAAGTGAAGACCCTTTTTGGTTTGGTATGAAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAATACAAGGTTGAAAAAGAAGCTTTTGGGGAAACACCGTAAAGATCAGCAGCAACAAGCTCGTAATAGAGGCAATAATGGTGTTATTATTAAGCAAGAAAGCAATAACAATAGAGTGATGAGTAGTAGTGAATTTTCCTTATCAAATTTGGTTCAAGAACAACCATATTTACCACATGTCATGCAACCTTTGCTATCAACACCCCCACCTCCACTACCATCAATGTTGTCATACACAAACCAACAAGGCTTCAATGATCAAGATTCTATTAGAAAACTTCTTATGAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTAATACTACTTTTGATGGTTGTAATCTTCAATTTTCAAATGCTACTTCTTCAACTCATGAACAAGTTTATGATCAAGAACATGTGGGTTCTTCTACTTGTGTTAATTCTTCCAATGATAACAACCACAACCAAGTACAATTCGCAACAAATGGTCAATACTTTGACTCGGTGCAAGAAGAGCAAGGTAAATTCATTCCAGAGATTGATCATATGGTATCTACTAATTATCCACCAAGATTTGATGGGTTGGAATTCTTTTATGGTGAAGAAGACTTGAATATTGATAATAATAAGATACAAGGTTCTAGTATTAATTGGGGTGAAGCTACCACTTCAAGTTATCATCATCTTCTTGATTCCAAATACCAAGGTTAA
Protein sequence

>MS.gene00555.t1

MVLGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKDQQQQARNRGNNGVIIKQESNNNRVMSSSEFSLSNLVQEQPYLPHVMQPLLSTPPPPLPSMLSYTNQQGFNDQDSIRKLLMKLGGRFSGDYHPNTTFDGCNLQFSNATSSTHEQVYDQEHVGSSTCVNSSNDNNHNQVQFATNGQYFDSVQEEQGKFIPEIDHMVSTNYPPRFDGLEFFYGEEDLNIDNNKIQGSSINWGEATTSSYHHLLDSKYQG