AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00558

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00558.t1 MTR_1g017090 94.853 272 12 2 1 271 1 271 0.0 518
MS.gene00558.t1 MTR_4g097600 72.308 130 32 2 118 245 112 239 6.60e-60 191
MS.gene00558.t1 MTR_5g014890 49.784 231 101 5 49 272 41 263 4.95e-59 189
MS.gene00558.t1 MTR_1g054285 70.079 127 36 1 119 245 142 266 1.34e-57 186
MS.gene00558.t1 MTR_7g093430 69.919 123 35 1 124 246 153 273 2.16e-56 183
MS.gene00558.t1 MTR_3g103590 48.473 262 111 10 28 271 34 289 3.97e-54 177
MS.gene00558.t1 MTR_5g013010 51.351 185 76 5 89 271 96 268 1.16e-52 173
MS.gene00558.t1 MTR_4g100550 61.871 139 43 3 130 267 119 248 2.46e-52 172
MS.gene00558.t1 MTR_2g061030 71.552 116 31 1 130 245 199 312 3.19e-52 174
MS.gene00558.t1 MTR_8g006705 69.565 115 32 2 130 243 145 257 1.29e-49 166
MS.gene00558.t1 MTR_4g084750 50.000 164 75 3 85 243 20 181 5.41e-42 143
MS.gene00558.t1 MTR_2g038625 49.677 155 74 3 95 249 49 199 2.60e-37 131
MS.gene00558.t1 MTR_2g038580 49.677 155 74 3 95 249 49 199 2.60e-37 131
MS.gene00558.t1 MTR_4g126900 59.292 113 44 2 133 243 90 202 3.71e-34 123
MS.gene00558.t1 MTR_5g013010 55.789 95 38 2 89 182 96 187 3.58e-22 91.7
MS.gene00558.t1 MTR_6g007647 52.747 91 43 0 128 218 30 120 4.25e-21 90.1
MS.gene00558.t1 MTR_6g007647 52.747 91 43 0 128 218 64 154 5.97e-21 90.1
MS.gene00558.t1 MTR_7g010020 43.925 107 53 1 130 229 79 185 2.04e-18 82.8
MS.gene00558.t1 MTR_7g103340 44.792 96 53 0 122 217 54 149 4.47e-18 81.3
MS.gene00558.t1 MTR_1g061660 45.263 95 52 0 125 219 53 147 8.22e-18 80.5
MS.gene00558.t1 MTR_3g080100 33.511 188 78 6 125 273 12 191 1.48e-17 79.3
MS.gene00558.t1 MTR_3g080100 33.511 188 78 6 125 273 51 230 1.58e-17 80.1
MS.gene00558.t1 MTR_8g089895 45.455 121 55 3 105 218 32 148 1.73e-17 80.9
MS.gene00558.t1 MTR_5g039000 44.444 99 53 1 122 218 66 164 4.18e-17 79.3
MS.gene00558.t1 MTR_8g468210 41.525 118 58 2 103 218 56 164 8.27e-17 78.6
MS.gene00558.t1 MTR_3g086790 48.421 95 42 1 131 218 60 154 1.38e-16 78.2
MS.gene00558.t1 MTR_8g469430 46.875 96 44 1 129 217 87 182 4.76e-16 76.6
MS.gene00558.t1 MTR_6g011610 48.936 94 41 1 131 217 96 189 5.27e-16 76.3
MS.gene00558.t1 MTR_6g011610 48.936 94 41 1 131 217 77 170 7.62e-16 75.5
MS.gene00558.t1 MTR_4g107650 48.864 88 45 0 131 218 95 182 8.10e-16 76.6
MS.gene00558.t1 MTR_5g038280 45.263 95 45 1 131 218 87 181 4.07e-15 74.3
MS.gene00558.t1 MTR_3g092150 41.935 93 47 1 134 219 41 133 3.14e-11 62.4
MS.gene00558.t1 MTR_5g019650 45.882 85 46 0 131 215 53 137 3.26e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00558.t1 AT4G37790 48.996 249 112 8 1 245 1 238 2.40e-60 192
MS.gene00558.t1 AT5G06710 56.983 179 62 5 89 258 140 312 1.79e-58 190
MS.gene00558.t1 AT2G22800 47.390 249 103 6 1 245 1 225 1.21e-54 178
MS.gene00558.t1 AT4G16780 59.589 146 48 4 124 267 121 257 2.67e-51 169
MS.gene00558.t1 AT3G60390 66.667 123 40 1 121 243 152 273 9.49e-51 169
MS.gene00558.t1 AT2G44910 68.376 117 34 2 130 245 162 276 1.10e-48 164
MS.gene00558.t1 AT5G47370 46.083 217 92 7 65 270 54 256 1.11e-48 163
MS.gene00558.t1 AT4G17460 40.408 245 132 6 16 247 7 250 1.88e-46 157
MS.gene00558.t1 AT2G01430 46.584 161 73 5 94 245 93 249 8.53e-39 137
MS.gene00558.t1 AT1G70920 46.667 150 67 2 106 253 44 182 1.56e-34 124
MS.gene00558.t1 AT1G70920 46.667 150 67 2 106 253 14 152 1.58e-34 123
MS.gene00558.t1 AT5G06710 55.340 103 36 3 89 182 140 241 1.51e-23 97.1
MS.gene00558.t1 AT2G01430 46.465 99 44 3 93 182 92 190 5.31e-20 86.3
MS.gene00558.t1 AT3G01470 46.316 95 44 1 129 216 66 160 2.10e-17 80.1
MS.gene00558.t1 AT1G69780 46.591 88 47 0 131 218 85 172 1.69e-16 78.2
MS.gene00558.t1 AT1G26960 39.837 123 68 3 126 246 64 182 2.94e-16 76.6
MS.gene00558.t1 AT5G15150 37.748 151 81 3 122 261 102 250 5.32e-16 77.0
MS.gene00558.t1 AT2G22430 45.455 99 50 1 127 221 58 156 1.81e-15 75.5
MS.gene00558.t1 AT4G40060 43.810 105 55 1 121 221 49 153 1.99e-15 75.1
MS.gene00558.t1 AT5G65310 44.444 99 48 1 131 222 72 170 4.42e-15 74.3
MS.gene00558.t1 AT5G65310 44.444 99 48 1 131 222 54 152 4.95e-15 73.9
MS.gene00558.t1 AT1G27045 50.000 88 44 0 131 218 68 155 6.85e-15 72.4
MS.gene00558.t1 AT1G27045 57.576 66 28 0 131 196 17 82 8.44e-15 71.2
MS.gene00558.t1 AT1G27045 57.576 66 28 0 131 196 25 90 9.21e-15 71.2
MS.gene00558.t1 AT1G27045 57.576 66 28 0 131 196 25 90 9.21e-15 71.2
MS.gene00558.t1 AT1G27045 50.000 88 44 0 131 218 68 155 1.01e-14 72.4
MS.gene00558.t1 AT2G36610 41.176 102 52 1 126 219 66 167 3.02e-14 69.7
MS.gene00558.t1 AT3G01220 41.667 108 52 2 122 218 74 181 3.44e-14 71.2
MS.gene00558.t1 AT5G03790 40.449 89 53 0 131 219 77 165 2.68e-13 68.2
MS.gene00558.t1 AT5G03790 36.207 116 68 2 131 240 77 192 2.29e-12 64.7
MS.gene00558.t1 AT2G46680 41.176 85 50 0 134 218 35 119 2.61e-12 65.9
MS.gene00558.t1 AT2G46680 41.176 85 50 0 134 218 35 119 2.88e-12 65.5
MS.gene00558.t1 AT2G18550 37.864 103 63 1 115 217 46 147 3.15e-11 62.0

Find 52 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCAACAACATTGCTTAT+TGG 0.141245 1.4:+5606753 MS.gene00558:CDS
TGCTGGAATCTTCATATAAA+AGG 0.190194 1.4:-5606667 None:intergenic
TCTTCACTTTCTTCCTTTGA+TGG 0.194879 1.4:-5604917 None:intergenic
ACATTTCCTATCCTTGTAAT+TGG 0.209590 1.4:-5605100 None:intergenic
GTGAGCCTAAGTTTCTTCCT+TGG 0.317530 1.4:-5605139 None:intergenic
AAAACAACAATCAGAAGTTT+TGG 0.327778 1.4:+5605162 MS.gene00558:CDS
CTTCAACTTGATCTTGATCT+AGG 0.366943 1.4:+5604785 MS.gene00558:CDS
TGAGCCTAAGTTTCTTCCTT+GGG 0.367322 1.4:-5605138 None:intergenic
GGAGAGTGGTGAGGAATTTG+AGG 0.383101 1.4:+5605060 MS.gene00558:CDS
GAATCCATCAAAATGCATTA+AGG 0.386220 1.4:+5604871 MS.gene00558:CDS
GCTTATCCAATGCTTACATT+AGG 0.396378 1.4:+5604893 MS.gene00558:CDS
ACCACTCTCCTTCTTGATGC+TGG 0.408547 1.4:-5605047 None:intergenic
TAGAGGTGTGGTTTCAAAAT+CGG 0.417824 1.4:+5605946 MS.gene00558:CDS
AGCAAATAAGCTGAATCTGC+AGG 0.462898 1.4:+5605914 MS.gene00558:CDS
CCTTCGTGTGAGACAATTTG+TGG 0.483619 1.4:+5606708 MS.gene00558:CDS
AAGCAATGTTGTTGAGGGTA+AGG 0.485816 1.4:-5606748 None:intergenic
GCTGGAATCTTCATATAAAA+GGG 0.492378 1.4:-5606666 None:intergenic
ATAGGAAATGTTGATAAAGA+TGG 0.494478 1.4:+5605112 MS.gene00558:CDS
GATGGTCCTAATGTAAGCAT+TGG 0.505729 1.4:-5604899 None:intergenic
GCCAATAAGCAATGTTGTTG+AGG 0.507378 1.4:-5606754 None:intergenic
GATCATCAAAATGATCATGA+AGG 0.507703 1.4:-5604814 None:intergenic
GGTTTCAAAATCGGAGAGCC+AGG 0.511878 1.4:+5605955 MS.gene00558:CDS
GGAGAACAAGAAGTTGCAAA+AGG 0.515455 1.4:+5606602 MS.gene00558:CDS
CCAATAAGCAATGTTGTTGA+GGG 0.519543 1.4:-5606753 None:intergenic
ACTCTCCTTCTTGATGCTGG+TGG 0.522994 1.4:-5605044 None:intergenic
AGAGCATTCTACTCTTAATC+CGG 0.524461 1.4:+5605198 MS.gene00558:CDS
AGAAAGCAAGAAGAAAAGAG+TGG 0.525098 1.4:+5604847 MS.gene00558:CDS
AAGGTGCCAATTACAAGGAT+AGG 0.527337 1.4:+5605094 MS.gene00558:CDS
CAGAACAAAGCTGAAACAAA+CGG 0.533275 1.4:+5606533 MS.gene00558:intron
ATTTGAGGTAGAGATAGAAA+AGG 0.543575 1.4:+5605075 MS.gene00558:CDS
AAATTCCACCAGCATCAAGA+AGG 0.544578 1.4:+5605039 MS.gene00558:CDS
TAGAAAAGGTGCCAATTACA+AGG 0.547476 1.4:+5605089 MS.gene00558:CDS
ATCAAGTTGAAGCCATGTGT+TGG 0.549755 1.4:-5604774 None:intergenic
GTAGCCCAAGGAAGAAACTT+AGG 0.555898 1.4:+5605134 MS.gene00558:CDS
AAGTTGAAGCCATGTGTTGG+AGG 0.556547 1.4:-5604771 None:intergenic
ATCATCAAAATGATCATGAA+GGG 0.559045 1.4:-5604813 None:intergenic
CACAAATTGTCTCACACGAA+GGG 0.559451 1.4:-5606707 None:intergenic
CTTGCAGAAGTAAATTGAGT+AGG 0.581739 1.4:-5604998 None:intergenic
GCTTACATTAGGACCATCAA+AGG 0.583436 1.4:+5604904 MS.gene00558:CDS
TGTCTCACACGAAGGGCAGA+TGG 0.589258 1.4:-5606700 None:intergenic
ATTTGTGGTGGCAACAACAA+TGG 0.596806 1.4:+5606723 MS.gene00558:CDS
CAGATGGTAAGTGTTGCTGC+TGG 0.599263 1.4:-5606684 None:intergenic
TTGATGATACCTCCAACACA+TGG 0.609555 1.4:+5604762 MS.gene00558:CDS
ACAACATTCAACATCAAAGA+CGG 0.613762 1.4:+5604955 MS.gene00558:CDS
TCTGCAGGCTAGACAAGTAG+AGG 0.619659 1.4:+5605929 MS.gene00558:CDS
CCACAAATTGTCTCACACGA+AGG 0.633537 1.4:-5606708 None:intergenic
TTGATAAAGATGGTAGCCCA+AGG 0.634722 1.4:+5605122 MS.gene00558:CDS
ACCAGCATCAAGAAGGAGAG+TGG 0.638240 1.4:+5605046 MS.gene00558:CDS
GTGTTGCGAATCTCTAACAG+AGG 0.648660 1.4:+5606581 MS.gene00558:CDS
CATCAAGAAGGAGAGTGGTG+AGG 0.670590 1.4:+5605051 MS.gene00558:CDS
AGGCTAGACAAGTAGAGGTG+TGG 0.674713 1.4:+5605934 MS.gene00558:CDS
TCGTGTGAGACAATTTGTGG+TGG 0.683367 1.4:+5606711 MS.gene00558:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAAAATTAAATTCTA+AGG - chr1.4:5605773-5605792 None:intergenic 10.0%
!! AAACAAAGAAGTAAAATATA+TGG - chr1.4:5606181-5606200 None:intergenic 15.0%
!! AAGTTTATAAAAATTGTTTC+AGG - chr1.4:5605677-5605696 None:intergenic 15.0%
!! ATGAAAATATTGATGAATTA+AGG - chr1.4:5605226-5605245 None:intergenic 15.0%
!!! AAACATTTCTAAAAAAAATG+AGG - chr1.4:5605729-5605748 None:intergenic 15.0%
!!! ACAATTTTTATAAACTTGTA+CGG + chr1.4:5605680-5605699 MS.gene00558:intron 15.0%
!!! ATTTTATTAGAATTAGATCT+TGG + chr1.4:5605467-5605486 MS.gene00558:intron 15.0%
!!! ATTTTTTTTAGAAATGTTTG+TGG + chr1.4:5605730-5605749 MS.gene00558:intron 15.0%
!! AAATTTGTAATACATTGGAT+TGG - chr1.4:5605816-5605835 None:intergenic 20.0%
!! AGTTTCAAAATTTATTCTCT+TGG + chr1.4:5605548-5605567 MS.gene00558:intron 20.0%
!! CTACAAAATTTGTAATACAT+TGG - chr1.4:5605821-5605840 None:intergenic 20.0%
!! TTTCAGGAAATTATTTATTC+TGG - chr1.4:5605661-5605680 None:intergenic 20.0%
!!! ACTTCTTTGTTTTTTTTTAC+TGG + chr1.4:5606189-5606208 MS.gene00558:intron 20.0%
!!! CATCAATATTTTCATATCTT+TGG + chr1.4:5605231-5605250 MS.gene00558:intron 20.0%
!!! TCATTTCCATAAAAACTTTT+TGG + chr1.4:5606788-5606807 MS.gene00558:CDS 20.0%
! ACAAAAAATGTTAACAGCTA+GGG + chr1.4:5606383-5606402 MS.gene00558:intron 25.0%
! ATACAATTTCACAAAATCTG+AGG - chr1.4:5606478-5606497 None:intergenic 25.0%
! ATATATATTGTTAGAGCGAA+AGG + chr1.4:5606292-5606311 MS.gene00558:intron 25.0%
! ATATTGATGAATTAAGGTAC+CGG - chr1.4:5605220-5605239 None:intergenic 25.0%
! ATCATCAAAATGATCATGAA+GGG - chr1.4:5604816-5604835 None:intergenic 25.0%
!! AAAACAACAATCAGAAGTTT+TGG + chr1.4:5605162-5605181 MS.gene00558:CDS 25.0%
!! AATATCAAAACAAAAGTACG+TGG - chr1.4:5605286-5605305 None:intergenic 25.0%
!! ATAGGAAATGTTGATAAAGA+TGG + chr1.4:5605112-5605131 MS.gene00558:CDS 25.0%
!! TGTATTACAAATTTTGTAGC+AGG + chr1.4:5605822-5605841 MS.gene00558:intron 25.0%
!!! ATGATCATTTTGATGATCAT+GGG + chr1.4:5604819-5604838 MS.gene00558:CDS 25.0%
AAGGTAAAGTATGCAATCAA+AGG - chr1.4:5606452-5606471 None:intergenic 30.0%
ACAACATTCAACATCAAAGA+CGG + chr1.4:5604955-5604974 MS.gene00558:CDS 30.0%
ACATTTCCTATCCTTGTAAT+TGG - chr1.4:5605103-5605122 None:intergenic 30.0%
AGGTAAAGTATGCAATCAAA+GGG - chr1.4:5606451-5606470 None:intergenic 30.0%
CACAAAAAATGTTAACAGCT+AGG + chr1.4:5606382-5606401 MS.gene00558:intron 30.0%
GAATCCATCAAAATGCATTA+AGG + chr1.4:5604871-5604890 MS.gene00558:CDS 30.0%
GACGTTTAAAGAGTTTAAGA+AGG - chr1.4:5606424-5606443 None:intergenic 30.0%
GATCATCAAAATGATCATGA+AGG - chr1.4:5604817-5604836 None:intergenic 30.0%
GCTGGAATCTTCATATAAAA+GGG - chr1.4:5606669-5606688 None:intergenic 30.0%
GGTAAAATCTTGATATTCCT+AGG + chr1.4:5605610-5605629 MS.gene00558:intron 30.0%
GTTTAAAGAGTTTAAGAAGG+AGG - chr1.4:5606421-5606440 None:intergenic 30.0%
TATGAAGCAAACTCAATCTA+AGG - chr1.4:5605529-5605548 None:intergenic 30.0%
TGCTGGAATCTTCATATAAA+AGG - chr1.4:5606670-5606689 None:intergenic 30.0%
TTAGAATTAGATCTTGGTCT+TGG + chr1.4:5605473-5605492 MS.gene00558:intron 30.0%
TTCACAAAATCTGAGGAATA+AGG - chr1.4:5606471-5606490 None:intergenic 30.0%
! AAAACAAAAGTACGTGGTAT+AGG - chr1.4:5605280-5605299 None:intergenic 30.0%
! ATTTGAGGTAGAGATAGAAA+AGG + chr1.4:5605075-5605094 MS.gene00558:CDS 30.0%
! ATTTTACCAAACACTTTGGT+GGG - chr1.4:5605598-5605617 None:intergenic 30.0%
! CAAGATTTTACCAAACACTT+TGG - chr1.4:5605602-5605621 None:intergenic 30.0%
! TAAGCCTTAATGCATTTTGA+TGG - chr1.4:5604878-5604897 None:intergenic 30.0%
! TCTCTTGGATTACATTTTCT+AGG + chr1.4:5605563-5605582 MS.gene00558:intron 30.0%
!! CATGATCATTTTGATGATCA+TGG + chr1.4:5604818-5604837 MS.gene00558:CDS 30.0%
AGAAAGCAAGAAGAAAAGAG+TGG + chr1.4:5604847-5604866 MS.gene00558:CDS 35.0%
AGAGTTTAAGAAGGAGGTTT+AGG - chr1.4:5606415-5606434 None:intergenic 35.0%
CAGAACAAAGCTGAAACAAA+CGG + chr1.4:5606533-5606552 MS.gene00558:intron 35.0%
CCAATAAGCAATGTTGTTGA+GGG - chr1.4:5606756-5606775 None:intergenic 35.0%
CGATACTATCTTAAAACGCA+CGG - chr1.4:5605993-5606012 None:intergenic 35.0%
CTTCAACTTGATCTTGATCT+AGG + chr1.4:5604785-5604804 MS.gene00558:CDS 35.0%
CTTGATATTCCTAGGAAAGT+TGG + chr1.4:5605618-5605637 MS.gene00558:intron 35.0%
CTTGCAGAAGTAAATTGAGT+AGG - chr1.4:5605001-5605020 None:intergenic 35.0%
GAGTTTAAGAAGGAGGTTTA+GGG - chr1.4:5606414-5606433 None:intergenic 35.0%
GCTTATCCAATGCTTACATT+AGG + chr1.4:5604893-5604912 MS.gene00558:CDS 35.0%
TCTTCACTTTCTTCCTTTGA+TGG - chr1.4:5604920-5604939 None:intergenic 35.0%
TGCATCATGACAATTGCTAA+TGG - chr1.4:5606062-5606081 None:intergenic 35.0%
! AGAGCATTCTACTCTTAATC+CGG + chr1.4:5605198-5605217 MS.gene00558:CDS 35.0%
! ATATTCCTAGGAAAGTTGGT+AGG + chr1.4:5605622-5605641 MS.gene00558:intron 35.0%
! ATTATTCCCACCAAAGTGTT+TGG + chr1.4:5605589-5605608 MS.gene00558:intron 35.0%
! CACACACAGTATTTTTCTCA+TGG + chr1.4:5605369-5605388 MS.gene00558:intron 35.0%
! GATTTTACCAAACACTTTGG+TGG - chr1.4:5605599-5605618 None:intergenic 35.0%
! TAGAGGTGTGGTTTCAAAAT+CGG + chr1.4:5605946-5605965 MS.gene00558:CDS 35.0%
! TCTAAGGTGTGTTTGTTTCA+AGG - chr1.4:5605757-5605776 None:intergenic 35.0%
!! ACAACAATCAGAAGTTTTGG+AGG + chr1.4:5605165-5605184 MS.gene00558:CDS 35.0%
!! TAGAAAAGGTGCCAATTACA+AGG + chr1.4:5605089-5605108 MS.gene00558:CDS 35.0%
AAATTCCACCAGCATCAAGA+AGG + chr1.4:5605039-5605058 MS.gene00558:CDS 40.0%
AAGCAATGTTGTTGAGGGTA+AGG - chr1.4:5606751-5606770 None:intergenic 40.0%
AGCAAATAAGCTGAATCTGC+AGG + chr1.4:5605914-5605933 MS.gene00558:CDS 40.0%
ATTTGTGGTGGCAACAACAA+TGG + chr1.4:5606723-5606742 MS.gene00558:CDS 40.0%
CACAAATTGTCTCACACGAA+GGG - chr1.4:5606710-5606729 None:intergenic 40.0%
CCCTCAACAACATTGCTTAT+TGG + chr1.4:5606753-5606772 MS.gene00558:CDS 40.0%
GATGGTCCTAATGTAAGCAT+TGG - chr1.4:5604902-5604921 None:intergenic 40.0%
GCCAATAAGCAATGTTGTTG+AGG - chr1.4:5606757-5606776 None:intergenic 40.0%
GCGAAAGGAGAAAACTTAGA+TGG + chr1.4:5606307-5606326 MS.gene00558:intron 40.0%
GCTTACATTAGGACCATCAA+AGG + chr1.4:5604904-5604923 MS.gene00558:CDS 40.0%
GGAGAACAAGAAGTTGCAAA+AGG + chr1.4:5606602-5606621 MS.gene00558:CDS 40.0%
TATCCTCTACATGCGCAATA+TGG - chr1.4:5606349-5606368 None:intergenic 40.0%
TGAGCCTAAGTTTCTTCCTT+GGG - chr1.4:5605141-5605160 None:intergenic 40.0%
TTGATAAAGATGGTAGCCCA+AGG + chr1.4:5605122-5605141 MS.gene00558:CDS 40.0%
! AAGGTGCCAATTACAAGGAT+AGG + chr1.4:5605094-5605113 MS.gene00558:CDS 40.0%
! TGGTCTTGGTTGATTGTGTT+TGG + chr1.4:5605487-5605506 MS.gene00558:intron 40.0%
! TTGATGATACCTCCAACACA+TGG + chr1.4:5604762-5604781 MS.gene00558:CDS 40.0%
!! ATCAAGTTGAAGCCATGTGT+TGG - chr1.4:5604777-5604796 None:intergenic 40.0%
AAGTTGAAGCCATGTGTTGG+AGG - chr1.4:5604774-5604793 None:intergenic 45.0%
ACACACCTACCAACTTTCCT+AGG - chr1.4:5605630-5605649 None:intergenic 45.0%
CCACAAATTGTCTCACACGA+AGG - chr1.4:5606711-5606730 None:intergenic 45.0%
CCTTCGTGTGAGACAATTTG+TGG + chr1.4:5606708-5606727 MS.gene00558:CDS 45.0%
GTAGCCCAAGGAAGAAACTT+AGG + chr1.4:5605134-5605153 MS.gene00558:CDS 45.0%
GTGAGCCTAAGTTTCTTCCT+TGG - chr1.4:5605142-5605161 None:intergenic 45.0%
GTGTTGCGAATCTCTAACAG+AGG + chr1.4:5606581-5606600 MS.gene00558:CDS 45.0%
TCGTGTGAGACAATTTGTGG+TGG + chr1.4:5606711-5606730 MS.gene00558:CDS 45.0%
TCTCCATATTGCGCATGTAG+AGG + chr1.4:5606343-5606362 MS.gene00558:intron 45.0%
ACCACTCTCCTTCTTGATGC+TGG - chr1.4:5605050-5605069 None:intergenic 50.0%
ACCAGCATCAAGAAGGAGAG+TGG + chr1.4:5605046-5605065 MS.gene00558:CDS 50.0%
ACTCTCCTTCTTGATGCTGG+TGG - chr1.4:5605047-5605066 None:intergenic 50.0%
AGGCTAGACAAGTAGAGGTG+TGG + chr1.4:5605934-5605953 MS.gene00558:CDS 50.0%
CATCAAGAAGGAGAGTGGTG+AGG + chr1.4:5605051-5605070 MS.gene00558:CDS 50.0%
GCACGGAGCAGTAAATTACC+TGG - chr1.4:5605976-5605995 None:intergenic 50.0%
GGAGAGTGGTGAGGAATTTG+AGG + chr1.4:5605060-5605079 MS.gene00558:CDS 50.0%
GGTTTCAAAATCGGAGAGCC+AGG + chr1.4:5605955-5605974 MS.gene00558:CDS 50.0%
TCTGCAGGCTAGACAAGTAG+AGG + chr1.4:5605929-5605948 MS.gene00558:CDS 50.0%
! CAGATGGTAAGTGTTGCTGC+TGG - chr1.4:5606687-5606706 None:intergenic 50.0%
TGTCTCACACGAAGGGCAGA+TGG - chr1.4:5606703-5606722 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 5604755 5606815 5604755 ID=MS.gene00558
chr1.4 mRNA 5604755 5606815 5604755 ID=MS.gene00558.t1;Parent=MS.gene00558
chr1.4 exon 5604755 5605219 5604755 ID=MS.gene00558.t1.exon1;Parent=MS.gene00558.t1
chr1.4 CDS 5604755 5605219 5604755 ID=cds.MS.gene00558.t1;Parent=MS.gene00558.t1
chr1.4 exon 5605897 5605976 5605897 ID=MS.gene00558.t1.exon2;Parent=MS.gene00558.t1
chr1.4 CDS 5605897 5605976 5605897 ID=cds.MS.gene00558.t1;Parent=MS.gene00558.t1
chr1.4 exon 5606536 5606815 5606536 ID=MS.gene00558.t1.exon3;Parent=MS.gene00558.t1
chr1.4 CDS 5606536 5606815 5606536 ID=cds.MS.gene00558.t1;Parent=MS.gene00558.t1
Gene Sequence

>MS.gene00558

ATGAATTTTGATGATACCTCCAACACATGGCTTCAACTTGATCTTGATCTAGGTCTTGCCCTTCATGATCATTTTGATGATCATGGGAAGAGAGAAAGCAAGAAGAAAAGAGTGGAGAATCCATCAAAATGCATTAAGGCTTATCCAATGCTTACATTAGGACCATCAAAGGAAGAAAGTGAAGAAAATACTAAAATTCAACAACATTCAACATCAAAGACGGAATCTTGTGATCAAAATTTACCTACTCAATTTACTTCTGCAAGCATAGAGTCTTCATTTTCAAATTCCACCAGCATCAAGAAGGAGAGTGGTGAGGAATTTGAGGTAGAGATAGAAAAGGTGCCAATTACAAGGATAGGAAATGTTGATAAAGATGGTAGCCCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAGAAGTTTTGGAGGAAAACTTCAAAGAGCATTCTACTCTTAATCCGGTACCTTAATTCATCAATATTTTCATATCTTTGGTTGCTTTAAATAATTCTTTTGCTCCTATACCACGTACTTTTGTTTTGATATTTTTATTTTAGTACTAATAACTATTTTATATATATATATATATATATATATATATATATATAGACACACACAGTATTTTTCTCATGGCACACTAATTGTGTGTAGCATATAGTAAATGAAGAATATGATATCATTTTAAACGAGTTTTCTCGATGATATTTGATTTTATTAGAATTAGATCTTGGTCTTGGTTGATTGTGTTTGGTCTAAAACTGAGAAGACCTTAGATTGAGTTTGCTTCATAGTTTCAAAATTTATTCTCTTGGATTACATTTTCTAGGAATATTATTCCCACCAAAGTGTTTGGTAAAATCTTGATATTCCTAGGAAAGTTGGTAGGTGTGTTTTATTTTCCAGAATAAATAATTTCCTGAAACAATTTTTATAAACTTGTACGGAATATAATAATATTAAATTCTAACCTCATTTTTTTTAGAAATGTTTGTGGACCTTGAAACAAACACACCTTAGAATTTAATTTTTTTTCTAATTTGTGCAATTGCTACATCCAATCCAATGTATTACAAATTTTGTAGCAGGAGTATATGTTGCTTTGTTATTATTAATAAAAAGAAAATCTCATTTTCTTCAGAAGCAAAAGCAAGCATTAGCAAATAAGCTGAATCTGCAGGCTAGACAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGTAATTTACTGCTCCGTGCGTTTTAAGATAGTATCGTTTAAAGTTTTTTTATATAGATTAAAAACTTTACAAAACTGTTTATCCATTAGCAATTGTCATGATGCATAACAAAATATAATGTCTTGAGACTTATGTACACACAAAAAGTTGTGATAAAATTGAAATAATGAAATTATACTATTGATGTTACATTAAAAAGTACCATATATTTTACTTCTTTGTTTTTTTTTACTGGATCGCACATACTTTACTTTATTGCTTCTTTAATAGATAAATGTTACTTTTTTTAATAATAAATAAATGTTACTTGTTAGTATATATATTGTTAGAGCGAAAGGAGAAAACTTAGATGGCACGCGTCTCAACTCTCCATATTGCGCATGTAGAGGATACTCGATTTACACACACAAAAAATGTTAACAGCTAGGGTCAAACCCTAAACCTCCTTCTTAAACTCTTTAAACGTCTCGACCCTTTGATTGCATACTTTACCTTATTCCTCAGATTTTGTGAAATTGTATTTCTTGCATATACTAATGATTACTATATACATGTTCAGAACAAAGCTGAAACAAACGGAATCTGATTGTGAAGTACTGAAGAAGTGTTGCGAATCTCTAACAGAGGAGAACAAGAAGTTGCAAAAGGAGCTACAAGAACTAAAGTCAATGCAAACAGTAGCAGCAGCACCCTTTTATATGAAGATTCCAGCAGCAACACTTACCATCTGCCCTTCGTGTGAGACAATTTGTGGTGGCAACAACAATGGCTCCTTACCCTCAACAACATTGCTTATTGGCTCAAAGAATCATCATTTCCATAAAAACTTTTTGGTTTGA
Protein sequence

>MS.gene00558.t1

MNFDDTSNTWLQLDLDLGLALHDHFDDHGKRESKKKRVENPSKCIKAYPMLTLGPSKEESEENTKIQQHSTSKTESCDQNLPTQFTSASIESSFSNSTSIKKESGEEFEVEIEKVPITRIGNVDKDGSPRKKLRLTKQQSEVLEENFKEHSTLNPKQKQALANKLNLQARQVEVWFQNRRARTKLKQTESDCEVLKKCCESLTEENKKLQKELQELKSMQTVAAAPFYMKIPAATLTICPSCETICGGNNNGSLPSTTLLIGSKNHHFHKNFLV