Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005639.t1 | XP_024632639.1 | 70 | 687 | 197 | 3 | 7 | 684 | 7 | 693 | 4.30E-286 | 993.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005639.t1 | Q9SZL8 | 33.7 | 570 | 370 | 6 | 7 | 570 | 73 | 640 | 8.9e-99 | 362.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005639.t1 | A0A1S2XKF4 | 58.7 | 734 | 253 | 6 | 7 | 733 | 10 | 700 | 1.0e-236 | 829.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005639.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005639.t1 | MTR_5g039760 | 50.769 | 195 | 70 | 3 | 9 | 201 | 12 | 182 | 1.94e-55 | 188 |
| MS.gene005639.t1 | MTR_7g074790 | 52.663 | 169 | 61 | 2 | 7 | 174 | 10 | 160 | 1.38e-46 | 166 |
| MS.gene005639.t1 | MTR_6g051425 | 34.066 | 273 | 170 | 4 | 9 | 273 | 19 | 289 | 3.19e-40 | 151 |
| MS.gene005639.t1 | MTR_0558s0020 | 33.463 | 257 | 150 | 4 | 11 | 246 | 40 | 296 | 1.04e-38 | 145 |
| MS.gene005639.t1 | MTR_0402s0040 | 43.094 | 181 | 99 | 3 | 6 | 183 | 25 | 204 | 6.20e-38 | 148 |
| MS.gene005639.t1 | MTR_7g061980 | 54.545 | 110 | 49 | 1 | 7 | 115 | 10 | 119 | 3.94e-33 | 124 |
| MS.gene005639.t1 | MTR_6g090505 | 32.210 | 267 | 155 | 5 | 42 | 282 | 11 | 277 | 1.03e-32 | 130 |
| MS.gene005639.t1 | MTR_4g102720 | 38.788 | 165 | 68 | 1 | 7 | 171 | 7 | 138 | 5.19e-32 | 124 |
| MS.gene005639.t1 | MTR_8g446020 | 36.364 | 176 | 110 | 1 | 73 | 246 | 81 | 256 | 5.37e-30 | 119 |
| MS.gene005639.t1 | MTR_1g083640 | 29.130 | 230 | 142 | 4 | 13 | 221 | 57 | 286 | 6.33e-26 | 108 |
| MS.gene005639.t1 | MTR_1g070355 | 29.508 | 244 | 160 | 5 | 12 | 247 | 79 | 318 | 1.80e-25 | 112 |
| MS.gene005639.t1 | MTR_5g015480 | 45.161 | 124 | 65 | 2 | 5 | 125 | 54 | 177 | 4.42e-25 | 105 |
| MS.gene005639.t1 | MTR_7g446520 | 28.761 | 226 | 147 | 1 | 11 | 236 | 92 | 303 | 3.13e-21 | 96.3 |
| MS.gene005639.t1 | MTR_5g076070 | 25.316 | 237 | 171 | 3 | 2 | 234 | 48 | 282 | 3.29e-20 | 92.0 |
| MS.gene005639.t1 | MTR_7g446510 | 30.814 | 172 | 119 | 0 | 83 | 254 | 158 | 329 | 4.41e-20 | 92.8 |
| MS.gene005639.t1 | MTR_4g035820 | 24.590 | 366 | 246 | 9 | 6 | 355 | 74 | 425 | 1.07e-19 | 94.4 |
| MS.gene005639.t1 | MTR_2g070590 | 42.056 | 107 | 59 | 2 | 5 | 108 | 15 | 121 | 1.82e-19 | 85.1 |
| MS.gene005639.t1 | MTR_7g113010 | 42.063 | 126 | 58 | 2 | 7 | 130 | 457 | 569 | 3.01e-19 | 92.8 |
| MS.gene005639.t1 | MTR_6g017200 | 44.330 | 97 | 51 | 2 | 5 | 98 | 56 | 152 | 3.31e-18 | 82.8 |
| MS.gene005639.t1 | MTR_7g446480 | 30.233 | 172 | 120 | 0 | 83 | 254 | 143 | 314 | 3.32e-18 | 86.7 |
| MS.gene005639.t1 | MTR_1g057920 | 45.652 | 92 | 47 | 2 | 5 | 93 | 32 | 123 | 4.09e-18 | 81.3 |
| MS.gene005639.t1 | MTR_0337s0040 | 32.168 | 143 | 95 | 1 | 73 | 213 | 82 | 224 | 7.55e-18 | 83.6 |
| MS.gene005639.t1 | MTR_2g099430 | 50.575 | 87 | 42 | 1 | 30 | 115 | 26 | 112 | 9.44e-17 | 77.4 |
| MS.gene005639.t1 | MTR_1g086270 | 36.585 | 82 | 52 | 0 | 300 | 381 | 1 | 82 | 1.27e-16 | 76.6 |
| MS.gene005639.t1 | MTR_1g013060 | 27.317 | 205 | 141 | 4 | 7 | 204 | 24 | 227 | 2.06e-16 | 79.7 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 56 | 156 | 3.17e-15 | 76.3 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 56 | 156 | 3.88e-15 | 75.9 |
| MS.gene005639.t1 | MTR_2g014100 | 29.592 | 196 | 117 | 6 | 13 | 187 | 50 | 245 | 6.65e-15 | 75.5 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 76 | 176 | 7.76e-15 | 75.5 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 76 | 176 | 8.10e-15 | 75.5 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 74 | 174 | 8.22e-15 | 75.5 |
| MS.gene005639.t1 | MTR_4g067290 | 42.157 | 102 | 56 | 3 | 7 | 106 | 116 | 216 | 1.21e-14 | 75.9 |
| MS.gene005639.t1 | MTR_6g022070 | 28.824 | 170 | 114 | 3 | 300 | 468 | 1 | 164 | 1.28e-14 | 76.3 |
| MS.gene005639.t1 | MTR_2g098880 | 40.187 | 107 | 60 | 3 | 7 | 109 | 61 | 167 | 6.87e-14 | 72.8 |
| MS.gene005639.t1 | MTR_2g098880 | 41.121 | 107 | 59 | 3 | 7 | 109 | 73 | 179 | 8.79e-14 | 72.8 |
| MS.gene005639.t1 | MTR_3g006370 | 40.566 | 106 | 60 | 3 | 4 | 106 | 47 | 152 | 3.60e-13 | 70.1 |
| MS.gene005639.t1 | MTR_6g022080 | 29.655 | 145 | 98 | 2 | 19 | 159 | 97 | 241 | 5.90e-13 | 69.7 |
| MS.gene005639.t1 | MTR_2g098920 | 38.889 | 108 | 63 | 3 | 1 | 106 | 74 | 180 | 6.34e-13 | 70.1 |
| MS.gene005639.t1 | MTR_1g019850 | 32.331 | 133 | 82 | 2 | 7 | 137 | 70 | 196 | 3.66e-12 | 67.4 |
| MS.gene005639.t1 | MTR_8g067580 | 50.000 | 66 | 17 | 1 | 62 | 127 | 2 | 51 | 3.44e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005639.t1 | AT4G38180 | 33.684 | 570 | 370 | 6 | 7 | 570 | 73 | 640 | 3.07e-112 | 358 |
| MS.gene005639.t1 | AT4G15090 | 31.386 | 599 | 399 | 8 | 7 | 601 | 51 | 641 | 3.64e-101 | 330 |
| MS.gene005639.t1 | AT4G15090 | 31.386 | 599 | 399 | 8 | 7 | 601 | 51 | 641 | 3.64e-101 | 330 |
| MS.gene005639.t1 | AT4G15090 | 31.386 | 599 | 399 | 8 | 7 | 601 | 51 | 641 | 3.64e-101 | 330 |
| MS.gene005639.t1 | AT4G15090 | 31.386 | 599 | 399 | 8 | 7 | 601 | 51 | 641 | 3.64e-101 | 330 |
| MS.gene005639.t1 | AT4G15090 | 31.386 | 599 | 399 | 8 | 7 | 601 | 51 | 641 | 3.64e-101 | 330 |
| MS.gene005639.t1 | AT1G76320 | 31.491 | 597 | 386 | 11 | 11 | 603 | 1 | 578 | 7.76e-90 | 296 |
| MS.gene005639.t1 | AT1G76320 | 31.491 | 597 | 386 | 11 | 11 | 603 | 1 | 578 | 9.33e-90 | 297 |
| MS.gene005639.t1 | AT1G76320 | 31.491 | 597 | 386 | 11 | 11 | 603 | 1 | 578 | 9.45e-90 | 297 |
| MS.gene005639.t1 | AT1G76320 | 31.491 | 597 | 386 | 11 | 11 | 603 | 1 | 578 | 9.45e-90 | 297 |
| MS.gene005639.t1 | AT3G22170 | 30.081 | 615 | 379 | 13 | 7 | 603 | 70 | 651 | 4.30e-84 | 285 |
| MS.gene005639.t1 | AT3G22170 | 30.081 | 615 | 379 | 13 | 7 | 603 | 70 | 651 | 4.30e-84 | 285 |
| MS.gene005639.t1 | AT2G27110 | 30.167 | 600 | 381 | 10 | 4 | 599 | 46 | 611 | 2.31e-78 | 269 |
| MS.gene005639.t1 | AT2G27110 | 30.167 | 600 | 381 | 10 | 4 | 599 | 46 | 611 | 2.31e-78 | 269 |
| MS.gene005639.t1 | AT3G06250 | 27.955 | 626 | 393 | 14 | 3 | 620 | 186 | 761 | 2.77e-78 | 267 |
| MS.gene005639.t1 | AT3G06250 | 27.955 | 626 | 393 | 14 | 3 | 620 | 186 | 761 | 2.77e-78 | 267 |
| MS.gene005639.t1 | AT3G06250 | 27.955 | 626 | 393 | 14 | 3 | 620 | 186 | 761 | 2.77e-78 | 267 |
| MS.gene005639.t1 | AT5G18960 | 27.697 | 621 | 400 | 13 | 5 | 620 | 209 | 785 | 1.02e-72 | 252 |
| MS.gene005639.t1 | AT5G18960 | 38.235 | 102 | 48 | 3 | 7 | 106 | 43 | 131 | 1.37e-11 | 68.6 |
| MS.gene005639.t1 | AT5G18960 | 27.697 | 621 | 400 | 13 | 5 | 620 | 209 | 785 | 1.02e-72 | 252 |
| MS.gene005639.t1 | AT5G18960 | 38.235 | 102 | 48 | 3 | 7 | 106 | 43 | 131 | 1.37e-11 | 68.6 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 24 | 583 | 5.27e-67 | 236 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 24 | 583 | 5.27e-67 | 236 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 24 | 583 | 6.79e-67 | 236 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 38 | 597 | 7.84e-67 | 236 |
| MS.gene005639.t1 | AT2G27110 | 31.279 | 438 | 294 | 4 | 163 | 599 | 35 | 466 | 8.56e-67 | 234 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 24 | 583 | 9.48e-67 | 236 |
| MS.gene005639.t1 | AT4G19990 | 27.551 | 588 | 393 | 8 | 10 | 592 | 24 | 583 | 9.48e-67 | 236 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 3.44e-63 | 225 |
| MS.gene005639.t1 | AT4G38170 | 29.341 | 501 | 324 | 11 | 183 | 676 | 21 | 498 | 4.17e-63 | 221 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 5.04e-63 | 226 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 5.04e-63 | 226 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 5.27e-63 | 226 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 5.27e-63 | 226 |
| MS.gene005639.t1 | AT2G32250 | 27.603 | 605 | 369 | 12 | 10 | 603 | 41 | 587 | 5.27e-63 | 226 |
| MS.gene005639.t1 | AT2G32250 | 27.483 | 604 | 369 | 12 | 11 | 603 | 1 | 546 | 2.01e-62 | 223 |
| MS.gene005639.t1 | AT2G32250 | 27.483 | 604 | 369 | 12 | 11 | 603 | 1 | 546 | 2.38e-62 | 223 |
| MS.gene005639.t1 | AT1G52520 | 27.622 | 572 | 380 | 11 | 6 | 562 | 84 | 636 | 4.89e-62 | 221 |
| MS.gene005639.t1 | AT4G19990 | 27.174 | 552 | 370 | 7 | 45 | 592 | 3 | 526 | 1.20e-61 | 220 |
| MS.gene005639.t1 | AT1G80010 | 27.257 | 576 | 392 | 13 | 7 | 564 | 95 | 661 | 3.28e-59 | 214 |
| MS.gene005639.t1 | AT1G10240 | 26.224 | 572 | 398 | 12 | 7 | 565 | 48 | 608 | 7.42e-56 | 203 |
| MS.gene005639.t1 | AT1G10240 | 26.224 | 572 | 398 | 12 | 7 | 565 | 48 | 608 | 7.42e-56 | 203 |
| MS.gene005639.t1 | AT5G28530 | 23.236 | 581 | 413 | 11 | 4 | 563 | 52 | 620 | 9.32e-47 | 177 |
| MS.gene005639.t1 | AT5G28530 | 23.408 | 581 | 408 | 12 | 4 | 563 | 52 | 616 | 4.65e-46 | 175 |
| MS.gene005639.t1 | AT5G28530 | 23.408 | 581 | 408 | 12 | 4 | 563 | 52 | 616 | 4.65e-46 | 175 |
| MS.gene005639.t1 | AT5G28530 | 22.903 | 310 | 225 | 5 | 258 | 563 | 258 | 557 | 1.87e-21 | 99.8 |
| MS.gene005639.t1 | AT5G28530 | 25.581 | 172 | 122 | 4 | 4 | 169 | 52 | 223 | 1.40e-11 | 68.6 |
| MS.gene005639.t1 | AT5G28530 | 23.226 | 310 | 220 | 6 | 258 | 563 | 258 | 553 | 5.94e-21 | 98.2 |
| MS.gene005639.t1 | AT5G28530 | 25.581 | 172 | 122 | 4 | 4 | 169 | 52 | 223 | 1.49e-11 | 68.2 |
| MS.gene005639.t1 | AT3G59470 | 41.176 | 102 | 57 | 3 | 7 | 106 | 70 | 170 | 4.39e-14 | 73.2 |
| MS.gene005639.t1 | AT3G59470 | 41.176 | 102 | 57 | 3 | 7 | 106 | 70 | 170 | 4.39e-14 | 73.2 |
| MS.gene005639.t1 | AT3G59470 | 41.176 | 102 | 57 | 3 | 7 | 106 | 82 | 182 | 7.32e-14 | 72.8 |
| MS.gene005639.t1 | AT3G07500 | 35.772 | 123 | 66 | 3 | 2 | 111 | 28 | 150 | 1.65e-13 | 70.9 |
| MS.gene005639.t1 | AT2G43280 | 38.462 | 130 | 73 | 5 | 7 | 131 | 22 | 149 | 2.44e-13 | 70.1 |
| MS.gene005639.t1 | AT4G12850 | 36.842 | 133 | 75 | 5 | 3 | 130 | 7 | 135 | 9.47e-13 | 67.8 |
| MS.gene005639.t1 | AT4G12850 | 39.815 | 108 | 60 | 3 | 3 | 108 | 7 | 111 | 1.92e-12 | 65.9 |
| MS.gene005639.t1 | AT4G12850 | 39.815 | 108 | 60 | 3 | 3 | 108 | 7 | 111 | 3.42e-12 | 65.1 |
Find 0 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATCAAACTCATGA+TGG | - | 8683:54924-54943 | None:intergenic | 20.0% |
| !! | AAAGCAATAACATATTCAAA+TGG | - | 8683:54985-55004 | None:intergenic | 20.0% |
| !! | AACATATTCAAATGGATATT+GGG | - | 8683:54977-54996 | None:intergenic | 20.0% |
| !! | ATTTGAATATGTTATTGCTT+TGG | + | 8683:54984-55003 | MS.gene005639:CDS | 20.0% |
| !! | CATAATAAATACAAGGTTAT+AGG | - | 8683:55603-55622 | None:intergenic | 20.0% |
| !! | TAACATATTCAAATGGATAT+TGG | - | 8683:54978-54997 | None:intergenic | 20.0% |
| !!! | TAGTTTTACTAGATTATTGA+TGG | + | 8683:55773-55792 | MS.gene005639:CDS | 20.0% |
| !!! | TTCTTTTACTTTATTAATGC+AGG | + | 8683:55856-55875 | MS.gene005639:intron | 20.0% |
| !!! | TTTTCAAAATGTATTGATCA+GGG | - | 8683:55149-55168 | None:intergenic | 20.0% |
| ! | AATTGGATGATATTAATTCC+TGG | - | 8683:54745-54764 | None:intergenic | 25.0% |
| ! | CTTATGAGTATCAAACAAAT+GGG | + | 8683:55700-55719 | MS.gene005639:CDS | 25.0% |
| ! | GTTAGCACATAATAAATACA+AGG | - | 8683:55610-55629 | None:intergenic | 25.0% |
| ! | TACTTTAACAGAAAGAAAGA+CGG | + | 8683:53608-53627 | MS.gene005639:CDS | 25.0% |
| ! | TATGAGTTATCTCAAACAAA+TGG | + | 8683:55741-55760 | MS.gene005639:CDS | 25.0% |
| !! | ATCTTAGACTATGGTTATTT+TGG | + | 8683:54154-54173 | MS.gene005639:CDS | 25.0% |
| !! | ATGATGGAATAAGTCAAAAA+CGG | - | 8683:54908-54927 | None:intergenic | 25.0% |
| !! | ATTTTACCATGCATATCAAA+TGG | + | 8683:54084-54103 | MS.gene005639:CDS | 25.0% |
| !! | GAGTTTAAATTCAAGTTTCA+AGG | + | 8683:54708-54727 | MS.gene005639:CDS | 25.0% |
| !! | GTATTTTCAAACTCAATCAT+TGG | + | 8683:54051-54070 | MS.gene005639:CDS | 25.0% |
| !! | TTTGTTTGAGATAACTCATA+AGG | - | 8683:55741-55760 | None:intergenic | 25.0% |
| !!! | ATCAATACATTTTGAAAAGG+TGG | + | 8683:55151-55170 | MS.gene005639:CDS | 25.0% |
| !!! | CTGATCAATACATTTTGAAA+AGG | + | 8683:55148-55167 | MS.gene005639:CDS | 25.0% |
| !!! | CTTTTCAAAATGTATTGATC+AGG | - | 8683:55150-55169 | None:intergenic | 25.0% |
| !!! | TAACTTTTGATGATCATTGA+AGG | + | 8683:55626-55645 | MS.gene005639:intron | 25.0% |
| !!! | TATGGAAAAGAAATTGGTTT+TGG | + | 8683:53572-53591 | MS.gene005639:CDS | 25.0% |
| AAACTACCAAGGATAAGATA+TGG | + | 8683:54838-54857 | MS.gene005639:CDS | 30.0% | |
| AACTACCAAGGATAAGATAT+GGG | + | 8683:54839-54858 | MS.gene005639:CDS | 30.0% | |
| ATTGCACTTAGTGTAAAGAA+TGG | + | 8683:53746-53765 | MS.gene005639:CDS | 30.0% | |
| CCATTTGTTTGATACTCATA+AGG | - | 8683:55702-55721 | None:intergenic | 30.0% | |
| CCTTATGAGTATCAAACAAA+TGG | + | 8683:55699-55718 | MS.gene005639:CDS | 30.0% | |
| CGTTGTATACTAGATAGTTT+GGG | - | 8683:55237-55256 | None:intergenic | 30.0% | |
| CTTGGTTATGGAAAAGAAAT+TGG | + | 8683:53566-53585 | MS.gene005639:CDS | 30.0% | |
| CTTTCTACAACTACATGATA+TGG | - | 8683:55058-55077 | None:intergenic | 30.0% | |
| GAAATCAATGTATGCTATCA+AGG | + | 8683:54618-54637 | MS.gene005639:CDS | 30.0% | |
| GAATATGTTATTGCTTTGGT+CGG | + | 8683:54988-55007 | MS.gene005639:CDS | 30.0% | |
| GCAAAAATGATCTTAGACTA+TGG | + | 8683:54145-54164 | MS.gene005639:CDS | 30.0% | |
| GTATGCTATCAAGGAAAAAT+GGG | + | 8683:54627-54646 | MS.gene005639:CDS | 30.0% | |
| GTGGTATTATCTTTGATGTT+AGG | + | 8683:55190-55209 | MS.gene005639:CDS | 30.0% | |
| TAATCTTGGATATACACCAT+TGG | + | 8683:53958-53977 | MS.gene005639:CDS | 30.0% | |
| TCGTTGTATACTAGATAGTT+TGG | - | 8683:55238-55257 | None:intergenic | 30.0% | |
| TGAAAATGTTACTCAACCAA+GGG | + | 8683:55431-55450 | MS.gene005639:CDS | 30.0% | |
| TGACCTGTGTAATAAAGTAA+AGG | + | 8683:55347-55366 | MS.gene005639:intron | 30.0% | |
| TGATATGCATGGTAAAATGA+TGG | - | 8683:54082-54101 | None:intergenic | 30.0% | |
| TGTATGCTATCAAGGAAAAA+TGG | + | 8683:54626-54645 | MS.gene005639:CDS | 30.0% | |
| TGTTGCATCTATAAGTCAAA+TGG | + | 8683:55650-55669 | MS.gene005639:CDS | 30.0% | |
| TTGCACTTAGTGTAAAGAAT+GGG | + | 8683:53747-53766 | MS.gene005639:CDS | 30.0% | |
| TTGTTTCAGGAAGTTGTAAA+AGG | - | 8683:53811-53830 | None:intergenic | 30.0% | |
| ! | AAAACTTTTCTTGAAGCACA+TGG | + | 8683:54328-54347 | MS.gene005639:CDS | 30.0% |
| ! | ACATTTTCAGCAGTTATTGT+TGG | - | 8683:55420-55439 | None:intergenic | 30.0% |
| ! | AGCTGTTTCATCATACAAAA+GGG | - | 8683:54287-54306 | None:intergenic | 30.0% |
| ! | CATTTTCAGCAGTTATTGTT+GGG | - | 8683:55419-55438 | None:intergenic | 30.0% |
| ! | CTTGGACTTCAGATATTTTA+CGG | - | 8683:53853-53872 | None:intergenic | 30.0% |
| ! | GAATATGACCTTTTATCTGT+CGG | - | 8683:53680-53699 | None:intergenic | 30.0% |
| ! | TCTCAAAGTGTTTGAAGAAT+TGG | - | 8683:54762-54781 | None:intergenic | 30.0% |
| ! | TGAAGATTTTTGCATCAAAC+CGG | - | 8683:53903-53922 | None:intergenic | 30.0% |
| !! | GTCTAAGATCATTTTTGCAT+CGG | - | 8683:54143-54162 | None:intergenic | 30.0% |
| !! | TGTAGAAAGTTTGAGACTTT+TGG | + | 8683:55069-55088 | MS.gene005639:CDS | 30.0% |
| AAACAGCTGAGTCATTCAAA+TGG | + | 8683:54299-54318 | MS.gene005639:CDS | 35.0% | |
| AAGCAATGTTTGAAGAAGCT+TGG | + | 8683:54551-54570 | MS.gene005639:CDS | 35.0% | |
| AGCATGAAGTATGGAGAAAT+TGG | + | 8683:54016-54035 | MS.gene005639:CDS | 35.0% | |
| AGTAAAGGAGGTTTGATTAC+AGG | + | 8683:55362-55381 | MS.gene005639:intron | 35.0% | |
| AGTCAAGACATAAACTACCA+AGG | + | 8683:54827-54846 | MS.gene005639:CDS | 35.0% | |
| CAGAATGGGATTAAACATCT+TGG | + | 8683:54460-54479 | MS.gene005639:CDS | 35.0% | |
| CATATTCAGTTAAGAACCCT+AGG | + | 8683:53693-53712 | MS.gene005639:CDS | 35.0% | |
| CCTCCTTTACTTTATTACAC+AGG | - | 8683:55353-55372 | None:intergenic | 35.0% | |
| CCTGTGTAATAAAGTAAAGG+AGG | + | 8683:55350-55369 | MS.gene005639:intron | 35.0% | |
| CTGAAAATGTTACTCAACCA+AGG | + | 8683:55430-55449 | MS.gene005639:CDS | 35.0% | |
| CTTTGATGTTAGGAGAAATG+AGG | + | 8683:55200-55219 | MS.gene005639:CDS | 35.0% | |
| GAAAATGTTACTCAACCAAG+GGG | + | 8683:55432-55451 | MS.gene005639:CDS | 35.0% | |
| GAAGTTGTAAAAGGTGGTTA+TGG | - | 8683:53802-53821 | None:intergenic | 35.0% | |
| GAGTCACATAATCAGAATGA+AGG | + | 8683:55878-55897 | MS.gene005639:CDS | 35.0% | |
| TACGTCTTGATAAACCATCT+CGG | - | 8683:55467-55486 | None:intergenic | 35.0% | |
| TCAAACAAATGGGAACAGTT+TGG | + | 8683:55710-55729 | MS.gene005639:CDS | 35.0% | |
| TCTACAACTACATGATATGG+AGG | - | 8683:55055-55074 | None:intergenic | 35.0% | |
| TGATGTTCATGACAAGAAGT+GGG | + | 8683:54594-54613 | MS.gene005639:CDS | 35.0% | |
| TTGATGTTCATGACAAGAAG+TGG | + | 8683:54593-54612 | MS.gene005639:CDS | 35.0% | |
| TTTCAGGAAGTTGTAAAAGG+TGG | - | 8683:53808-53827 | None:intergenic | 35.0% | |
| TTTGTGATCACAGAGTTCAA+AGG | + | 8683:53773-53792 | MS.gene005639:CDS | 35.0% | |
| ! | AACTAGTCACAAACGTGTTT+TGG | + | 8683:54116-54135 | MS.gene005639:CDS | 35.0% |
| ! | ACTAGTCACAAACGTGTTTT+GGG | + | 8683:54117-54136 | MS.gene005639:CDS | 35.0% |
| ! | CAGCTGTTTCATCATACAAA+AGG | - | 8683:54288-54307 | None:intergenic | 35.0% |
| ! | TAGATGAAGCTTGGGAATTT+TGG | + | 8683:53543-53562 | MS.gene005639:CDS | 35.0% |
| ! | TTTTGGTGAGGTAGTTTCTT+TGG | + | 8683:54171-54190 | MS.gene005639:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+GGG | + | 8683:53647-53666 | MS.gene005639:CDS | 35.0% |
| !!! | AGACTATGGTTATTTTGGTG+AGG | + | 8683:54159-54178 | MS.gene005639:CDS | 35.0% |
| !!! | GTTGGAGCTTTTTTTGCTTT+AGG | - | 8683:55519-55538 | None:intergenic | 35.0% |
| AAAATTACTACACCCGCTGT+TGG | + | 8683:53503-53522 | MS.gene005639:CDS | 40.0% | |
| AAAGACGGCTCAATTAGATC+AGG | + | 8683:53623-53642 | MS.gene005639:CDS | 40.0% | |
| AAAGCCAATGCTCATGATGA+AGG | + | 8683:55387-55406 | MS.gene005639:CDS | 40.0% | |
| AACTCGTGCAAATCTTCGAA+AGG | - | 8683:55309-55328 | None:intergenic | 40.0% | |
| AAGCCTGAAAACAATGCCAA+TGG | - | 8683:54229-54248 | None:intergenic | 40.0% | |
| ACATGGCACTTAATGCAGAA+TGG | + | 8683:54445-54464 | MS.gene005639:CDS | 40.0% | |
| ACTTTGTTGCCATGCTTTGA+AGG | + | 8683:55095-55114 | MS.gene005639:CDS | 40.0% | |
| AGACAACGAAGCATGAAGTA+TGG | + | 8683:54007-54026 | MS.gene005639:CDS | 40.0% | |
| AGAGAGTTGTTGTGGAGAAA+AGG | + | 8683:54779-54798 | MS.gene005639:CDS | 40.0% | |
| ATGGTTTATCAAGACGTAGG+AGG | + | 8683:55469-55488 | MS.gene005639:CDS | 40.0% | |
| ATTGAAATGGCAGAAGACTC+CGG | + | 8683:53881-53900 | MS.gene005639:CDS | 40.0% | |
| CACTGATCAAGACCAATCAA+TGG | + | 8683:54375-54394 | MS.gene005639:CDS | 40.0% | |
| CATGGCACTTAATGCAGAAT+GGG | + | 8683:54446-54465 | MS.gene005639:CDS | 40.0% | |
| CCAAGCACATGAGATTGAAA+TGG | + | 8683:53868-53887 | MS.gene005639:CDS | 40.0% | |
| CCATTTCAATCTCATGTGCT+TGG | - | 8683:53871-53890 | None:intergenic | 40.0% | |
| CCTCAAAAACCTTCAAAGCA+TGG | - | 8683:55107-55126 | None:intergenic | 40.0% | |
| CGCAATCCATTTGATATGCA+TGG | - | 8683:54093-54112 | None:intergenic | 40.0% | |
| CTAGTGCTTTAGCCATTGAT+TGG | - | 8683:54390-54409 | None:intergenic | 40.0% | |
| GAATGCCCATATCTTATCCT+TGG | - | 8683:54847-54866 | None:intergenic | 40.0% | |
| GAGATGGTTTATCAAGACGT+AGG | + | 8683:55466-55485 | MS.gene005639:CDS | 40.0% | |
| GTCAAATTCCATACCAACAG+CGG | - | 8683:53519-53538 | None:intergenic | 40.0% | |
| TCAAATTCCATACCAACAGC+GGG | - | 8683:53518-53537 | None:intergenic | 40.0% | |
| TGACAGTGTAGATGAAGCTT+GGG | + | 8683:53535-53554 | MS.gene005639:CDS | 40.0% | |
| TGATCAGTGAACAAAGTTCG+TGG | - | 8683:54364-54383 | None:intergenic | 40.0% | |
| TGGACTAAAAATGCACGAAG+TGG | + | 8683:55171-55190 | MS.gene005639:CDS | 40.0% | |
| TGGAGAAATTGGTTGTCTCA+TGG | + | 8683:54027-54046 | MS.gene005639:CDS | 40.0% | |
| TGGTTTATCAAGACGTAGGA+GGG | + | 8683:55470-55489 | MS.gene005639:CDS | 40.0% | |
| TGTTAGGAGAAATGAGGTTG+TGG | + | 8683:55206-55225 | MS.gene005639:CDS | 40.0% | |
| TTCAGGCTTCAACCACTATA+GGG | + | 8683:54240-54259 | MS.gene005639:CDS | 40.0% | |
| TTGACAGTGTAGATGAAGCT+TGG | + | 8683:53534-53553 | MS.gene005639:CDS | 40.0% | |
| TTTCAGGCTTCAACCACTAT+AGG | + | 8683:54239-54258 | MS.gene005639:CDS | 40.0% | |
| TTTCGAAGATTTGCACGAGT+TGG | + | 8683:55308-55327 | MS.gene005639:CDS | 40.0% | |
| ! | ACACTTTGAGAGAGTTGTTG+TGG | + | 8683:54771-54790 | MS.gene005639:CDS | 40.0% |
| ! | CTCGATGACGGTATTATAGT+TGG | - | 8683:55537-55556 | None:intergenic | 40.0% |
| ! | TGAGATCTTTGACTCGATGA+CGG | - | 8683:55549-55568 | None:intergenic | 40.0% |
| !! | AGGCAGGTTTGTTTGTTGTA+AGG | + | 8683:53643-53662 | MS.gene005639:CDS | 40.0% |
| !! | AGGTAGTTTCTAGCATCCAA+TGG | - | 8683:53977-53996 | None:intergenic | 40.0% |
| !! | ATGGGCATTCACTGATTCTA+AGG | + | 8683:54857-54876 | MS.gene005639:CDS | 40.0% |
| !! | CAGGTTTGTTTGTTGTAAGG+AGG | + | 8683:53646-53665 | MS.gene005639:CDS | 40.0% |
| !! | GCTAACATGTGTGTTGTTTC+AGG | - | 8683:53824-53843 | None:intergenic | 40.0% |
| !! | TATAGGGGCACAGTCATTTT+TGG | + | 8683:54256-54275 | MS.gene005639:CDS | 40.0% |
| !! | TTGCACGAGTTGGTACAAAA+TGG | + | 8683:55318-55337 | MS.gene005639:CDS | 40.0% |
| !!! | CCATGCTTTGAAGGTTTTTG+AGG | + | 8683:55104-55123 | MS.gene005639:CDS | 40.0% |
| !!! | TGGGAATTTTGGCTTGGTTA+TGG | + | 8683:53554-53573 | MS.gene005639:CDS | 40.0% |
| AAATGACTGTGCCCCTATAG+TGG | - | 8683:54255-54274 | None:intergenic | 45.0% | |
| AGGGGATTTAAGAACCGAGA+TGG | + | 8683:55450-55469 | MS.gene005639:CDS | 45.0% | |
| ATGGGCAGCATGTTACATGA+AGG | + | 8683:54645-54664 | MS.gene005639:CDS | 45.0% | |
| CAATCGTGCTAATCGACCAT+TGG | + | 8683:54210-54229 | MS.gene005639:CDS | 45.0% | |
| CAATGGTCGATTAGCACGAT+TGG | - | 8683:54212-54231 | None:intergenic | 45.0% | |
| CAGTTCTTGTGTCAGACCTA+GGG | - | 8683:53712-53731 | None:intergenic | 45.0% | |
| GACGTAGGAGGGAAAAAAGT+TGG | + | 8683:55481-55500 | MS.gene005639:CDS | 45.0% | |
| GCTGGAGGAAGAACTAATCT+TGG | + | 8683:53944-53963 | MS.gene005639:CDS | 45.0% | |
| GTCATCGACCGACAGATAAA+AGG | + | 8683:53669-53688 | MS.gene005639:CDS | 45.0% | |
| GTCATCGAGTCAAAGATCTC+AGG | + | 8683:55548-55567 | MS.gene005639:CDS | 45.0% | |
| TCAGGCTTCAACCACTATAG+GGG | + | 8683:54241-54260 | MS.gene005639:CDS | 45.0% | |
| TCTCGGTTCTTAAATCCCCT+TGG | - | 8683:55450-55469 | None:intergenic | 45.0% | |
| TGCTTCGTTGTCTTCTTGCT+TGG | - | 8683:54000-54019 | None:intergenic | 45.0% | |
| TGTTATTGCTTTGGTCGGTG+TGG | + | 8683:54993-55012 | MS.gene005639:CDS | 45.0% | |
| TTCAAGGCATGCATGAAACC+AGG | + | 8683:54724-54743 | MS.gene005639:CDS | 45.0% | |
| TTCGCCTTCATCATGAGCAT+TGG | - | 8683:55394-55413 | None:intergenic | 45.0% | |
| TTCGTTGTCTTCTTGCTTGG+AGG | - | 8683:53997-54016 | None:intergenic | 45.0% | |
| ! | AATGGCTAAAGCACTAGCTG+AGG | + | 8683:54393-54412 | MS.gene005639:CDS | 45.0% |
| ! | CGACCATTGGCATTGTTTTC+AGG | + | 8683:54223-54242 | MS.gene005639:CDS | 45.0% |
| !! | ATGAAGGAAGCATTCACCCT+TGG | + | 8683:54661-54680 | MS.gene005639:CDS | 45.0% |
| !!! | GAAGCTTGGGAATTTTGGCT+TGG | + | 8683:53548-53567 | MS.gene005639:CDS | 45.0% |
| ACGGCTCAATTAGATCAGGC+AGG | + | 8683:53627-53646 | MS.gene005639:CDS | 50.0% | |
| ATTGCTTTGGTCGGTGTGGA+AGG | + | 8683:54997-55016 | MS.gene005639:CDS | 50.0% | |
| CAGCTTATGAGTGCACATGC+TGG | + | 8683:53926-53945 | MS.gene005639:CDS | 50.0% | |
| CATAACCCATGTCGGGTATC+TGG | - | 8683:54424-54443 | None:intergenic | 50.0% | |
| CCAGTTCTTGTGTCAGACCT+AGG | - | 8683:53713-53732 | None:intergenic | 50.0% | |
| CCATGTGCATAACCCATGTC+GGG | - | 8683:54431-54450 | None:intergenic | 50.0% | |
| CCTAGGTCTGACACAAGAAC+TGG | + | 8683:53710-53729 | MS.gene005639:CDS | 50.0% | |
| CTGAGTACTTCGCATGCCAA+GGG | - | 8683:54680-54699 | None:intergenic | 50.0% | |
| CTTATGAGTGCACATGCTGG+AGG | + | 8683:53929-53948 | MS.gene005639:CDS | 50.0% | |
| GCCATGTGCATAACCCATGT+CGG | - | 8683:54432-54451 | None:intergenic | 50.0% | |
| GGACTGCAGAACATCTCGTT+TGG | + | 8683:55671-55690 | MS.gene005639:CDS | 50.0% | |
| TACTACACCCGCTGTTGGTA+TGG | + | 8683:53508-53527 | MS.gene005639:CDS | 50.0% | |
| TGATGCCAGATACCCGACAT+GGG | + | 8683:54416-54435 | MS.gene005639:CDS | 50.0% | |
| !! | GATTCTAAGGCAACTCGCAG+AGG | + | 8683:54870-54889 | MS.gene005639:CDS | 50.0% |
| GCTGAGTACTTCGCATGCCA+AGG | - | 8683:54681-54700 | None:intergenic | 55.0% | |
| GTGATGCCAGATACCCGACA+TGG | + | 8683:54415-54434 | MS.gene005639:CDS | 55.0% | |
| ! | CCCGACATGGGTTATGCACA+TGG | + | 8683:54428-54447 | MS.gene005639:CDS | 55.0% |
| GCTTTGGTCGGTGTGGAAGG+AGG | + | 8683:55000-55019 | MS.gene005639:CDS | 60.0% | |
| TGGTCGGTGTGGAAGGAGGT+TGG | + | 8683:55004-55023 | MS.gene005639:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8683 | gene | 53497 | 55907 | 53497 | ID=MS.gene005639 |
| 8683 | mRNA | 53497 | 55907 | 53497 | ID=MS.gene005639.t1;Parent=MS.gene005639 |
| 8683 | exon | 53497 | 55362 | 53497 | ID=MS.gene005639.t1.exon1;Parent=MS.gene005639.t1 |
| 8683 | CDS | 53497 | 55362 | 53497 | ID=cds.MS.gene005639.t1;Parent=MS.gene005639.t1 |
| 8683 | exon | 55384 | 55569 | 55384 | ID=MS.gene005639.t1.exon2;Parent=MS.gene005639.t1 |
| 8683 | CDS | 55384 | 55569 | 55384 | ID=cds.MS.gene005639.t1;Parent=MS.gene005639.t1 |
| 8683 | exon | 55648 | 55794 | 55648 | ID=MS.gene005639.t1.exon3;Parent=MS.gene005639.t1 |
| 8683 | CDS | 55648 | 55794 | 55648 | ID=cds.MS.gene005639.t1;Parent=MS.gene005639.t1 |
| 8683 | exon | 55878 | 55907 | 55878 | ID=MS.gene005639.t1.exon4;Parent=MS.gene005639.t1 |
| 8683 | CDS | 55878 | 55907 | 55878 | ID=cds.MS.gene005639.t1;Parent=MS.gene005639.t1 |
| Gene Sequence |
| Protein sequence |
