Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005643.t1 | XP_024630916.1 | 77.2 | 696 | 30 | 5 | 1 | 567 | 1 | 696 | 6.10E-293 | 1016.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005643.t1 | Q9SZL8 | 28.5 | 666 | 333 | 13 | 1 | 526 | 38 | 700 | 5.2e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005643.t1 | A0A3Q7Y261 | 63.1 | 694 | 124 | 5 | 3 | 567 | 5 | 695 | 5.3e-238 | 833.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005643.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005643.t1 | MTR_1g057920 | 96.748 | 123 | 4 | 0 | 1 | 123 | 1 | 123 | 8.76e-83 | 254 |
| MS.gene005643.t1 | MTR_0402s0040 | 63.500 | 200 | 46 | 1 | 9 | 181 | 1 | 200 | 1.31e-77 | 253 |
| MS.gene005643.t1 | MTR_0402s0040 | 66.169 | 201 | 54 | 5 | 376 | 567 | 236 | 431 | 4.94e-69 | 231 |
| MS.gene005643.t1 | MTR_7g113010 | 80.000 | 140 | 14 | 1 | 1 | 140 | 424 | 549 | 9.75e-69 | 233 |
| MS.gene005643.t1 | MTR_6g017200 | 76.423 | 123 | 29 | 0 | 8 | 130 | 32 | 154 | 8.37e-61 | 198 |
| MS.gene005643.t1 | MTR_2g070590 | 71.795 | 117 | 33 | 0 | 20 | 136 | 3 | 119 | 1.15e-51 | 173 |
| MS.gene005643.t1 | MTR_5g015480 | 61.429 | 140 | 50 | 1 | 1 | 140 | 27 | 162 | 1.51e-47 | 167 |
| MS.gene005643.t1 | MTR_0558s0020 | 31.984 | 247 | 121 | 5 | 48 | 247 | 50 | 296 | 6.33e-34 | 130 |
| MS.gene005643.t1 | MTR_0137s0040 | 57.692 | 104 | 42 | 1 | 1 | 102 | 1 | 104 | 1.14e-31 | 119 |
| MS.gene005643.t1 | MTR_6g051425 | 28.713 | 303 | 158 | 8 | 36 | 287 | 19 | 314 | 3.09e-31 | 124 |
| MS.gene005643.t1 | MTR_8g446020 | 33.173 | 208 | 98 | 4 | 80 | 247 | 50 | 256 | 3.73e-28 | 113 |
| MS.gene005643.t1 | MTR_0291s0060 | 71.622 | 74 | 21 | 0 | 11 | 84 | 12 | 85 | 6.47e-28 | 107 |
| MS.gene005643.t1 | MTR_6g090505 | 31.754 | 211 | 101 | 4 | 79 | 246 | 20 | 230 | 1.39e-26 | 111 |
| MS.gene005643.t1 | MTR_5g039760 | 39.773 | 176 | 92 | 7 | 36 | 202 | 12 | 182 | 6.92e-24 | 99.8 |
| MS.gene005643.t1 | MTR_1g086270 | 79.245 | 53 | 11 | 0 | 301 | 353 | 1 | 53 | 7.54e-24 | 96.7 |
| MS.gene005643.t1 | MTR_1g070355 | 28.112 | 249 | 137 | 7 | 29 | 241 | 67 | 309 | 7.38e-22 | 99.8 |
| MS.gene005643.t1 | MTR_1g083640 | 27.193 | 228 | 119 | 5 | 38 | 218 | 55 | 282 | 1.43e-19 | 89.7 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 56 | 162 | 6.72e-18 | 83.6 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 56 | 162 | 7.05e-18 | 83.6 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 76 | 182 | 9.30e-18 | 83.6 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 76 | 182 | 9.42e-18 | 83.6 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 74 | 180 | 9.71e-18 | 83.6 |
| MS.gene005643.t1 | MTR_4g102720 | 33.571 | 140 | 85 | 3 | 34 | 173 | 7 | 138 | 1.29e-17 | 82.4 |
| MS.gene005643.t1 | MTR_4g067290 | 40.367 | 109 | 63 | 2 | 34 | 142 | 116 | 222 | 1.65e-17 | 84.0 |
| MS.gene005643.t1 | MTR_2g098920 | 39.450 | 109 | 64 | 2 | 34 | 142 | 80 | 186 | 3.44e-17 | 82.0 |
| MS.gene005643.t1 | MTR_1g050985 | 64.407 | 59 | 18 | 1 | 104 | 159 | 39 | 97 | 2.04e-16 | 75.5 |
| MS.gene005643.t1 | MTR_3g006370 | 34.228 | 149 | 88 | 4 | 34 | 181 | 50 | 189 | 5.21e-16 | 77.8 |
| MS.gene005643.t1 | MTR_7g446520 | 27.459 | 244 | 131 | 5 | 38 | 252 | 92 | 318 | 9.14e-16 | 79.3 |
| MS.gene005643.t1 | MTR_5g076070 | 26.695 | 236 | 127 | 9 | 37 | 235 | 56 | 282 | 2.82e-15 | 77.0 |
| MS.gene005643.t1 | MTR_7g061980 | 38.182 | 110 | 64 | 3 | 28 | 136 | 4 | 110 | 7.60e-15 | 71.6 |
| MS.gene005643.t1 | MTR_7g446480 | 31.250 | 176 | 90 | 3 | 110 | 255 | 140 | 314 | 9.02e-14 | 72.8 |
| MS.gene005643.t1 | MTR_5g045210 | 40.449 | 89 | 53 | 0 | 437 | 525 | 20 | 108 | 9.30e-14 | 70.5 |
| MS.gene005643.t1 | MTR_2g098880 | 37.963 | 108 | 64 | 2 | 34 | 139 | 73 | 179 | 1.01e-13 | 72.0 |
| MS.gene005643.t1 | MTR_2g098880 | 37.963 | 108 | 64 | 2 | 34 | 139 | 61 | 167 | 1.02e-13 | 71.6 |
| MS.gene005643.t1 | MTR_1g091013 | 46.753 | 77 | 30 | 1 | 26 | 102 | 4 | 69 | 3.86e-13 | 65.1 |
| MS.gene005643.t1 | MTR_7g074790 | 34.416 | 154 | 87 | 5 | 34 | 176 | 10 | 160 | 6.50e-13 | 68.9 |
| MS.gene005643.t1 | MTR_7g446510 | 30.682 | 176 | 91 | 3 | 110 | 255 | 155 | 329 | 9.61e-13 | 70.1 |
| MS.gene005643.t1 | MTR_1g019850 | 32.031 | 128 | 78 | 2 | 14 | 140 | 50 | 169 | 5.61e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005643.t1 | AT4G38180 | 35.065 | 385 | 213 | 7 | 1 | 351 | 39 | 420 | 3.48e-71 | 244 |
| MS.gene005643.t1 | AT4G15090 | 30.321 | 343 | 209 | 4 | 34 | 347 | 51 | 392 | 1.74e-53 | 195 |
| MS.gene005643.t1 | AT4G15090 | 30.321 | 343 | 209 | 4 | 34 | 347 | 51 | 392 | 1.74e-53 | 195 |
| MS.gene005643.t1 | AT4G15090 | 30.321 | 343 | 209 | 4 | 34 | 347 | 51 | 392 | 1.74e-53 | 195 |
| MS.gene005643.t1 | AT4G15090 | 30.321 | 343 | 209 | 4 | 34 | 347 | 51 | 392 | 1.74e-53 | 195 |
| MS.gene005643.t1 | AT4G15090 | 30.321 | 343 | 209 | 4 | 34 | 347 | 51 | 392 | 1.74e-53 | 195 |
| MS.gene005643.t1 | AT3G22170 | 30.655 | 336 | 213 | 5 | 31 | 347 | 67 | 401 | 3.25e-50 | 186 |
| MS.gene005643.t1 | AT3G22170 | 30.655 | 336 | 213 | 5 | 31 | 347 | 67 | 401 | 3.25e-50 | 186 |
| MS.gene005643.t1 | AT1G76320 | 30.220 | 364 | 223 | 6 | 38 | 375 | 1 | 359 | 2.61e-48 | 179 |
| MS.gene005643.t1 | AT1G76320 | 30.220 | 364 | 223 | 6 | 38 | 375 | 1 | 359 | 5.35e-48 | 178 |
| MS.gene005643.t1 | AT1G76320 | 30.220 | 364 | 223 | 6 | 38 | 375 | 1 | 359 | 6.01e-48 | 178 |
| MS.gene005643.t1 | AT1G76320 | 30.220 | 364 | 223 | 6 | 38 | 375 | 1 | 359 | 6.01e-48 | 178 |
| MS.gene005643.t1 | AT3G06250 | 31.861 | 317 | 196 | 7 | 34 | 347 | 190 | 489 | 2.22e-47 | 177 |
| MS.gene005643.t1 | AT3G06250 | 33.929 | 112 | 60 | 2 | 25 | 136 | 19 | 116 | 6.17e-12 | 68.9 |
| MS.gene005643.t1 | AT3G06250 | 31.861 | 317 | 196 | 7 | 34 | 347 | 190 | 489 | 2.22e-47 | 177 |
| MS.gene005643.t1 | AT3G06250 | 33.929 | 112 | 60 | 2 | 25 | 136 | 19 | 116 | 6.17e-12 | 68.9 |
| MS.gene005643.t1 | AT3G06250 | 31.861 | 317 | 196 | 7 | 34 | 347 | 190 | 489 | 2.22e-47 | 177 |
| MS.gene005643.t1 | AT3G06250 | 33.929 | 112 | 60 | 2 | 25 | 136 | 19 | 116 | 6.17e-12 | 68.9 |
| MS.gene005643.t1 | AT1G10240 | 31.549 | 355 | 197 | 9 | 2 | 321 | 25 | 368 | 4.13e-45 | 169 |
| MS.gene005643.t1 | AT1G10240 | 31.549 | 355 | 197 | 9 | 2 | 321 | 25 | 368 | 4.13e-45 | 169 |
| MS.gene005643.t1 | AT5G18960 | 30.000 | 340 | 213 | 9 | 14 | 347 | 193 | 513 | 2.17e-43 | 166 |
| MS.gene005643.t1 | AT5G18960 | 34.454 | 119 | 64 | 2 | 18 | 136 | 27 | 131 | 3.34e-14 | 76.3 |
| MS.gene005643.t1 | AT5G18960 | 30.000 | 340 | 213 | 9 | 14 | 347 | 193 | 513 | 2.17e-43 | 166 |
| MS.gene005643.t1 | AT5G18960 | 34.454 | 119 | 64 | 2 | 18 | 136 | 27 | 131 | 3.34e-14 | 76.3 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 3.41e-40 | 156 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 4.50e-40 | 156 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 4.50e-40 | 156 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 4.70e-40 | 156 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 4.70e-40 | 156 |
| MS.gene005643.t1 | AT2G32250 | 28.846 | 312 | 205 | 5 | 37 | 347 | 41 | 336 | 4.70e-40 | 156 |
| MS.gene005643.t1 | AT2G27110 | 29.565 | 345 | 206 | 9 | 26 | 351 | 41 | 367 | 2.51e-39 | 154 |
| MS.gene005643.t1 | AT2G27110 | 29.565 | 345 | 206 | 9 | 26 | 351 | 41 | 367 | 2.51e-39 | 154 |
| MS.gene005643.t1 | AT2G32250 | 28.617 | 311 | 205 | 5 | 38 | 347 | 1 | 295 | 2.55e-39 | 154 |
| MS.gene005643.t1 | AT2G32250 | 28.617 | 311 | 205 | 5 | 38 | 347 | 1 | 295 | 3.02e-39 | 153 |
| MS.gene005643.t1 | AT1G80010 | 28.075 | 374 | 224 | 6 | 19 | 353 | 80 | 447 | 2.59e-37 | 147 |
| MS.gene005643.t1 | AT2G27110 | 36.905 | 168 | 105 | 1 | 185 | 351 | 55 | 222 | 4.19e-33 | 135 |
| MS.gene005643.t1 | AT5G28530 | 28.783 | 337 | 183 | 12 | 34 | 321 | 55 | 383 | 2.95e-32 | 132 |
| MS.gene005643.t1 | AT5G28530 | 28.783 | 337 | 183 | 12 | 34 | 321 | 55 | 383 | 3.86e-32 | 132 |
| MS.gene005643.t1 | AT5G28530 | 28.783 | 337 | 183 | 12 | 34 | 321 | 55 | 383 | 3.86e-32 | 132 |
| MS.gene005643.t1 | AT1G52520 | 28.710 | 310 | 194 | 6 | 33 | 321 | 84 | 387 | 4.93e-32 | 131 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 24 | 312 | 1.22e-31 | 130 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 24 | 312 | 1.22e-31 | 130 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 24 | 312 | 1.63e-31 | 130 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 24 | 312 | 1.63e-31 | 130 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 38 | 326 | 1.82e-31 | 130 |
| MS.gene005643.t1 | AT4G19990 | 28.523 | 298 | 189 | 6 | 37 | 319 | 24 | 312 | 1.93e-31 | 130 |
| MS.gene005643.t1 | AT4G38170 | 33.939 | 165 | 103 | 3 | 185 | 347 | 21 | 181 | 4.35e-25 | 109 |
| MS.gene005643.t1 | AT4G19990 | 29.730 | 222 | 145 | 5 | 100 | 319 | 43 | 255 | 5.70e-23 | 103 |
| MS.gene005643.t1 | AT3G59470 | 40.367 | 109 | 63 | 2 | 34 | 142 | 70 | 176 | 1.59e-18 | 85.9 |
| MS.gene005643.t1 | AT3G59470 | 40.367 | 109 | 63 | 2 | 34 | 142 | 70 | 176 | 1.59e-18 | 85.9 |
| MS.gene005643.t1 | AT3G59470 | 40.367 | 109 | 63 | 2 | 34 | 142 | 82 | 188 | 2.13e-18 | 85.9 |
| MS.gene005643.t1 | AT3G07500 | 38.889 | 108 | 65 | 1 | 34 | 141 | 33 | 139 | 1.95e-16 | 79.0 |
| MS.gene005643.t1 | AT2G43280 | 32.000 | 150 | 99 | 3 | 34 | 182 | 22 | 169 | 1.19e-15 | 76.3 |
| MS.gene005643.t1 | AT4G12850 | 38.835 | 103 | 59 | 2 | 34 | 136 | 11 | 109 | 1.95e-13 | 68.2 |
| MS.gene005643.t1 | AT4G12850 | 38.835 | 103 | 59 | 2 | 34 | 136 | 11 | 109 | 2.00e-13 | 68.2 |
| MS.gene005643.t1 | AT4G12850 | 38.835 | 103 | 59 | 2 | 34 | 136 | 11 | 109 | 3.43e-13 | 68.6 |
| MS.gene005643.t1 | AT2G43280 | 30.370 | 135 | 91 | 3 | 49 | 182 | 2 | 134 | 5.68e-12 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTATAGTAAAAGAAT+TGG | + | 8683:131304-131323 | MS.gene005643:CDS | 15.0% |
| !!! | AATTTTTTACTCACTTTAAA+AGG | + | 8683:132506-132525 | MS.gene005643:intron | 15.0% |
| !!! | AGCTAATAACAAATATATTT+TGG | + | 8683:131861-131880 | MS.gene005643:CDS | 15.0% |
| !!! | ATTCTTTTATGATTTTCAAA+TGG | + | 8683:131829-131848 | MS.gene005643:CDS | 15.0% |
| !!! | ATTTTTTACTCACTTTAAAA+GGG | + | 8683:132507-132526 | MS.gene005643:intron | 15.0% |
| !!! | GCTAATAACAAATATATTTT+GGG | + | 8683:131862-131881 | MS.gene005643:CDS | 15.0% |
| !!! | TTTTAAATTGAAGGAAAAAT+GGG | + | 8683:132372-132391 | MS.gene005643:intron | 15.0% |
| !!! | TTTTTAAATTGAAGGAAAAA+TGG | + | 8683:132371-132390 | MS.gene005643:intron | 15.0% |
| !! | AATTTATATCTGACTTCAAA+TGG | - | 8683:132480-132499 | None:intergenic | 20.0% |
| !! | ATTAATGATTATGGATACTT+TGG | + | 8683:131899-131918 | MS.gene005643:CDS | 20.0% |
| !! | TATAGTAAAAGAATTGGATT+TGG | + | 8683:131310-131329 | MS.gene005643:CDS | 20.0% |
| !! | TGAAAATCATAAAAGAATGA+TGG | - | 8683:131827-131846 | None:intergenic | 20.0% |
| !! | TGAAATTCCTCAAAAAAATT+TGG | - | 8683:132649-132668 | None:intergenic | 20.0% |
| !!! | AAAGTGAATTTTTGAATGAA+TGG | + | 8683:132296-132315 | MS.gene005643:intron | 20.0% |
| !!! | AATAACAAATATATTTTGGG+CGG | + | 8683:131865-131884 | MS.gene005643:CDS | 20.0% |
| !!! | CATATCATTAACTATTTTGT+TGG | - | 8683:133089-133108 | None:intergenic | 20.0% |
| !!! | GCATTCAATTTTTAAATTGA+AGG | + | 8683:132363-132382 | MS.gene005643:intron | 20.0% |
| !!! | TTTGAAGTCAGATATAAATT+TGG | + | 8683:132480-132499 | MS.gene005643:intron | 20.0% |
| ! | ATATATTGATGCAATTCTCT+TGG | - | 8683:131662-131681 | None:intergenic | 25.0% |
| ! | TATCAAGATACTTGCATAAA+AGG | + | 8683:132685-132704 | MS.gene005643:CDS | 25.0% |
| ! | TATGTTGTCCAAAAAATATC+TGG | + | 8683:133105-133124 | MS.gene005643:CDS | 25.0% |
| ! | TTATGTTCGAAAAACATTCA+CGG | + | 8683:132402-132421 | MS.gene005643:CDS | 25.0% |
| !! | AGAATTTGCTTAAAACCAAA+AGG | + | 8683:131735-131754 | MS.gene005643:CDS | 25.0% |
| !! | ATTTTACTTGATCGAAAGAT+AGG | + | 8683:131493-131512 | MS.gene005643:CDS | 25.0% |
| !! | CACAAATTATGATAATGCAA+AGG | + | 8683:132733-132752 | MS.gene005643:intron | 25.0% |
| !! | TTGTTTGAAATATGTCATCA+AGG | - | 8683:131792-131811 | None:intergenic | 25.0% |
| !! | TTTTACTTGATCGAAAGATA+GGG | + | 8683:131494-131513 | MS.gene005643:CDS | 25.0% |
| !!! | ATAATGTTTTGAAAGATTCG+TGG | + | 8683:132338-132357 | MS.gene005643:intron | 25.0% |
| !!! | TGGTTTTAAGCAAATTCTTA+AGG | - | 8683:131733-131752 | None:intergenic | 25.0% |
| !!! | TTACACTCCAAATTTTTTTG+AGG | + | 8683:132639-132658 | MS.gene005643:CDS | 25.0% |
| !!! | TTTTTTTGAGGAATTTCAAG+AGG | + | 8683:132651-132670 | MS.gene005643:CDS | 25.0% |
| AAATAAGGATTATCGACCTT+TGG | + | 8683:131955-131974 | MS.gene005643:CDS | 30.0% | |
| AACACTACATACTAAAACGA+TGG | + | 8683:132885-132904 | MS.gene005643:CDS | 30.0% | |
| AATAAGGATTATCGACCTTT+GGG | + | 8683:131956-131975 | MS.gene005643:CDS | 30.0% | |
| AGAATCATATGAACATACTC+AGG | - | 8683:131571-131590 | None:intergenic | 30.0% | |
| ATATAAGACAGAATGCTCTT+AGG | + | 8683:132197-132216 | MS.gene005643:CDS | 30.0% | |
| GCACAGATGATTAATGATTA+TGG | + | 8683:131890-131909 | MS.gene005643:CDS | 30.0% | |
| GCCTAAATTGAAAATGAAGA+AGG | + | 8683:132588-132607 | MS.gene005643:CDS | 30.0% | |
| GGAAATAAAAGCAGAATAGA+TGG | + | 8683:131349-131368 | MS.gene005643:CDS | 30.0% | |
| GTTATGCCAAAAACATTTCA+TGG | + | 8683:132160-132179 | MS.gene005643:CDS | 30.0% | |
| TAAGCAAATTCTTAAGGTCT+TGG | - | 8683:131727-131746 | None:intergenic | 30.0% | |
| TCGAAAGATAGGGAAATATA+AGG | + | 8683:131504-131523 | MS.gene005643:CDS | 30.0% | |
| TTCATCATTCGCAATTGATA+TGG | - | 8683:133161-133180 | None:intergenic | 30.0% | |
| TTGTCCAAAAAATATCTGGA+TGG | + | 8683:133109-133128 | MS.gene005643:CDS | 30.0% | |
| TTGTTGGACTTAATAATCAC+AGG | + | 8683:131984-132003 | MS.gene005643:CDS | 30.0% | |
| ! | AAACAATTCGTTCTTTTCAG+TGG | + | 8683:132044-132063 | MS.gene005643:CDS | 30.0% |
| ! | ATCCTTATTTGTCTTGTAAG+TGG | - | 8683:131945-131964 | None:intergenic | 30.0% |
| ! | ATTTGGAGTGTAAACATTTG+CGG | - | 8683:132632-132651 | None:intergenic | 30.0% |
| ! | CAAGAAACTTTTTGTTCCAT+AGG | - | 8683:132779-132798 | None:intergenic | 30.0% |
| ! | CACAATCCATGAAATGTTTT+TGG | - | 8683:132169-132188 | None:intergenic | 30.0% |
| ! | GCCTTCTTCATTTTCAATTT+AGG | - | 8683:132592-132611 | None:intergenic | 30.0% |
| ! | TGATCTGTTAGAATGGTTTT+AGG | - | 8683:132109-132128 | None:intergenic | 30.0% |
| !! | GAAACTTTTCTGAAAGAAGT+GGG | + | 8683:132073-132092 | MS.gene005643:CDS | 30.0% |
| !! | TCGTTTTAGTATGTAGTGTT+CGG | - | 8683:132885-132904 | None:intergenic | 30.0% |
| !! | TGAAACTTTTCTGAAAGAAG+TGG | + | 8683:132072-132091 | MS.gene005643:CDS | 30.0% |
| !!! | TTCTCCATCCAGATATTTTT+TGG | - | 8683:133116-133135 | None:intergenic | 30.0% |
| AAAGGGATGTCAATGCTAAA+CGG | + | 8683:132524-132543 | MS.gene005643:intron | 35.0% | |
| AAGATTCACATGCTTCAAAG+AGG | + | 8683:131387-131406 | MS.gene005643:CDS | 35.0% | |
| ACAAAATGTTCATCACGAGA+AGG | + | 8683:131210-131229 | MS.gene005643:CDS | 35.0% | |
| ACAAGCATCACAAATTGTCT+TGG | + | 8683:131616-131635 | MS.gene005643:intron | 35.0% | |
| AGATTCACATGCTTCAAAGA+GGG | + | 8683:131388-131407 | MS.gene005643:CDS | 35.0% | |
| AGGAAGCAATCACTAAAGTA+CGG | + | 8683:131755-131774 | MS.gene005643:CDS | 35.0% | |
| ATCATATGAACATACTCAGG+TGG | - | 8683:131568-131587 | None:intergenic | 35.0% | |
| ATTGAAGGAAAAATGGGCAT+AGG | + | 8683:132378-132397 | MS.gene005643:intron | 35.0% | |
| CAAGATACTTGCATAAAAGG+AGG | + | 8683:132688-132707 | MS.gene005643:CDS | 35.0% | |
| CAAGCATCACAAATTGTCTT+GGG | + | 8683:131617-131636 | MS.gene005643:intron | 35.0% | |
| CAATATATATCCAAGCAAGC+TGG | + | 8683:131674-131693 | MS.gene005643:CDS | 35.0% | |
| CACCACTTACAAGACAAATA+AGG | + | 8683:131940-131959 | MS.gene005643:CDS | 35.0% | |
| GGCAAAATGCATAAAGATGA+AGG | + | 8683:133210-133229 | MS.gene005643:CDS | 35.0% | |
| GTTGGACTCTTCATAAACTT+TGG | - | 8683:133071-133090 | None:intergenic | 35.0% | |
| TGCATCTTGATCTGTTAGAA+TGG | - | 8683:132116-132135 | None:intergenic | 35.0% | |
| TGCATGCTTCAAAATCCAAA+TGG | - | 8683:132258-132277 | None:intergenic | 35.0% | |
| TTGGTCAATTTAAGCAACTG+AGG | - | 8683:133010-133029 | None:intergenic | 35.0% | |
| TTTGGTATTCGTCGAGAATA+TGG | + | 8683:131328-131347 | MS.gene005643:CDS | 35.0% | |
| ! | CGTGATGAACATTTTGTTCA+TGG | - | 8683:131207-131226 | None:intergenic | 35.0% |
| ! | CTTTAGTGATTGCTTCCTTT+TGG | - | 8683:131753-131772 | None:intergenic | 35.0% |
| ! | GCGAACTCTTTTGATATAGA+TGG | - | 8683:132231-132250 | None:intergenic | 35.0% |
| ! | TCCAGATTGTGTCGATAAAT+GGG | + | 8683:131171-131190 | MS.gene005643:CDS | 35.0% |
| ! | TCCTATCGACACATATTTTG+AGG | + | 8683:131592-131611 | MS.gene005643:intron | 35.0% |
| ! | TGATAATGCAAAGGAGAAGA+TGG | + | 8683:132742-132761 | MS.gene005643:intron | 35.0% |
| ! | TGTCGTAAATTTGAGACACA+TGG | + | 8683:132803-132822 | MS.gene005643:intron | 35.0% |
| ! | TTCCAGATTGTGTCGATAAA+TGG | + | 8683:131170-131189 | MS.gene005643:CDS | 35.0% |
| !! | AAGGAAAGTATTGCCAATAG+TGG | + | 8683:131229-131248 | MS.gene005643:CDS | 35.0% |
| !! | ATGAGATTCTGAAGCTCTAT+TGG | - | 8683:133029-133048 | None:intergenic | 35.0% |
| !! | CGTTTTAGTATGTAGTGTTC+GGG | - | 8683:132884-132903 | None:intergenic | 35.0% |
| AAAAAGCCCATTTCACGAAG+CGG | + | 8683:132969-132988 | MS.gene005643:CDS | 40.0% | |
| AAAGAGTTCGCGATTCCATT+TGG | + | 8683:132240-132259 | MS.gene005643:CDS | 40.0% | |
| AAATTCATATGCCACTGCCT+CGG | - | 8683:131281-131300 | None:intergenic | 40.0% | |
| AACAGATCAAGATGCAGCAA+TGG | + | 8683:132120-132139 | MS.gene005643:CDS | 40.0% | |
| ACCCATTTATCGACACAATC+TGG | - | 8683:131175-131194 | None:intergenic | 40.0% | |
| AGCATGCATAGATCTAGATG+AGG | + | 8683:132270-132289 | MS.gene005643:CDS | 40.0% | |
| AGTCCAACAAATACACCCAA+AGG | - | 8683:131974-131993 | None:intergenic | 40.0% | |
| ATATATCCAAGCAAGCTGGT+GGG | + | 8683:131678-131697 | MS.gene005643:CDS | 40.0% | |
| ATCACTAAAGTACGGTGAAG+TGG | + | 8683:131763-131782 | MS.gene005643:CDS | 40.0% | |
| ATGCATAGATCTAGATGAGG+AGG | + | 8683:132273-132292 | MS.gene005643:CDS | 40.0% | |
| ATTGTACCGCTTCGTGAAAT+GGG | - | 8683:132978-132997 | None:intergenic | 40.0% | |
| ATTGTCTTGGGAGATGAATC+TGG | + | 8683:131629-131648 | MS.gene005643:intron | 40.0% | |
| CAATGTTGCCCCAAAAATGA+CGG | - | 8683:132014-132033 | None:intergenic | 40.0% | |
| GAAGTAATCAAGGTTGGAGT+GGG | + | 8683:132927-132946 | MS.gene005643:CDS | 40.0% | |
| GCAAAGGAGAAGATGGTAAT+GGG | + | 8683:132749-132768 | MS.gene005643:intron | 40.0% | |
| GCATAAAAGGAGGTGAAAGA+AGG | + | 8683:132698-132717 | MS.gene005643:CDS | 40.0% | |
| TATATATCCAAGCAAGCTGG+TGG | + | 8683:131677-131696 | MS.gene005643:CDS | 40.0% | |
| TATCTGGATGGAGAATCAAG+TGG | + | 8683:133121-133140 | MS.gene005643:CDS | 40.0% | |
| TCACTAAAGTACGGTGAAGT+GGG | + | 8683:131764-131783 | MS.gene005643:CDS | 40.0% | |
| TGCAAAGGAGAAGATGGTAA+TGG | + | 8683:132748-132767 | MS.gene005643:intron | 40.0% | |
| ! | CATTTCATGGATTGTGCACT+TGG | + | 8683:132173-132192 | MS.gene005643:CDS | 40.0% |
| ! | GCCTCAAAATATGTGTCGAT+AGG | - | 8683:131596-131615 | None:intergenic | 40.0% |
| ! | TATGCATTTTGCCTTGCCAA+CGG | - | 8683:133203-133222 | None:intergenic | 40.0% |
| ! | TCTAAAGCAGAAACCAGAAC+AGG | + | 8683:131451-131470 | MS.gene005643:CDS | 40.0% |
| !! | ACTTTTCTGAAAGAAGTGGG+TGG | + | 8683:132076-132095 | MS.gene005643:CDS | 40.0% |
| !! | GATGGTAATGGGAAATCCTA+TGG | + | 8683:132760-132779 | MS.gene005643:intron | 40.0% |
| !!! | ACAGGCAAACCGTCATTTTT+GGG | + | 8683:132002-132021 | MS.gene005643:CDS | 40.0% |
| AACGATGGACAAGAGATGCA+AGG | + | 8683:132900-132919 | MS.gene005643:CDS | 45.0% | |
| AGCTCAACATAACCACCTTC+TGG | + | 8683:131540-131559 | MS.gene005643:CDS | 45.0% | |
| CATTGTACCGCTTCGTGAAA+TGG | - | 8683:132979-132998 | None:intergenic | 45.0% | |
| CGACCTTTGGGTGTATTTGT+TGG | + | 8683:131968-131987 | MS.gene005643:CDS | 45.0% | |
| GACAACAACATAGACACCGT+TGG | + | 8683:133184-133203 | MS.gene005643:CDS | 45.0% | |
| GGAAGTAATCAAGGTTGGAG+TGG | + | 8683:132926-132945 | MS.gene005643:CDS | 45.0% | |
| GGATGGAGAATCAAGTGGAA+TGG | + | 8683:133126-133145 | MS.gene005643:CDS | 45.0% | |
| GTTCGAAAAACATTCACGGC+AGG | + | 8683:132406-132425 | MS.gene005643:CDS | 45.0% | |
| TATATCCAAGCAAGCTGGTG+GGG | + | 8683:131679-131698 | MS.gene005643:CDS | 45.0% | |
| TCAAACTGCATTCCCAAGTG+AGG | - | 8683:131256-131275 | None:intergenic | 45.0% | |
| TGACAAAAGACGTCAACCGA+CGG | + | 8683:131423-131442 | MS.gene005643:CDS | 45.0% | |
| !! | CACAGGCAAACCGTCATTTT+TGG | + | 8683:132001-132020 | MS.gene005643:CDS | 45.0% |
| !! | GCTTCGTGAAATGGGCTTTT+TGG | - | 8683:132970-132989 | None:intergenic | 45.0% |
| !!! | CAGGCAAACCGTCATTTTTG+GGG | + | 8683:132003-132022 | MS.gene005643:CDS | 45.0% |
| ATGGACAAGAGATGCAAGGC+TGG | + | 8683:132904-132923 | MS.gene005643:CDS | 50.0% | |
| CAACATAGACACCGTTGGCA+AGG | + | 8683:133189-133208 | MS.gene005643:CDS | 50.0% | |
| CATACTCAGGTGGAACCAGA+AGG | - | 8683:131558-131577 | None:intergenic | 50.0% | |
| GCAAGGCTGGGAAGTAATCA+AGG | + | 8683:132917-132936 | MS.gene005643:CDS | 50.0% | |
| GGCTGGGAAGTAATCAAGGT+TGG | + | 8683:132921-132940 | MS.gene005643:CDS | 50.0% | |
| GGGAATGCAGTTTGAATCCG+AGG | + | 8683:131261-131280 | MS.gene005643:CDS | 50.0% | |
| GTAATCAAGGTTGGAGTGGG+AGG | + | 8683:132930-132949 | MS.gene005643:CDS | 50.0% | |
| TCCCAAGTGAGGTCCACTAT+TGG | - | 8683:131245-131264 | None:intergenic | 50.0% | |
| TGGACAAGAGATGCAAGGCT+GGG | + | 8683:132905-132924 | MS.gene005643:CDS | 50.0% | |
| !! | GCCAATAGTGGACCTCACTT+GGG | + | 8683:131241-131260 | MS.gene005643:CDS | 50.0% |
| !! | TGCCAATAGTGGACCTCACT+TGG | + | 8683:131240-131259 | MS.gene005643:CDS | 50.0% |
| AACAGGATGCACAGCGCGTA+TGG | + | 8683:131468-131487 | MS.gene005643:CDS | 55.0% | |
| ACTCAGGTGGAACCAGAAGG+TGG | - | 8683:131555-131574 | None:intergenic | 55.0% | |
| CAAAAGACGTCAACCGACGG+CGG | + | 8683:131426-131445 | MS.gene005643:CDS | 55.0% | |
| GCAGTTTGAATCCGAGGCAG+TGG | + | 8683:131267-131286 | MS.gene005643:CDS | 55.0% | |
| ! | TCTGCTTTAGACTCCGCCGT+CGG | - | 8683:131442-131461 | None:intergenic | 55.0% |
| ACGCGCTGTGCATCCTGTTC+TGG | - | 8683:131467-131486 | None:intergenic | 60.0% | |
| GCTGGTGGGGTAGAGACTGT+CGG | + | 8683:131692-131711 | MS.gene005643:CDS | 60.0% | |
| ! | CTCTACCCCACCAGCTTGCT+TGG | - | 8683:131687-131706 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8683 | gene | 131154 | 133246 | 131154 | ID=MS.gene005643 |
| 8683 | mRNA | 131154 | 133246 | 131154 | ID=MS.gene005643.t1;Parent=MS.gene005643 |
| 8683 | exon | 131154 | 131572 | 131154 | ID=MS.gene005643.t1.exon1;Parent=MS.gene005643.t1 |
| 8683 | CDS | 131154 | 131572 | 131154 | ID=cds.MS.gene005643.t1;Parent=MS.gene005643.t1 |
| 8683 | exon | 131658 | 132298 | 131658 | ID=MS.gene005643.t1.exon2;Parent=MS.gene005643.t1 |
| 8683 | CDS | 131658 | 132298 | 131658 | ID=cds.MS.gene005643.t1;Parent=MS.gene005643.t1 |
| 8683 | exon | 132385 | 132427 | 132385 | ID=MS.gene005643.t1.exon3;Parent=MS.gene005643.t1 |
| 8683 | CDS | 132385 | 132427 | 132385 | ID=cds.MS.gene005643.t1;Parent=MS.gene005643.t1 |
| 8683 | exon | 132528 | 132719 | 132528 | ID=MS.gene005643.t1.exon4;Parent=MS.gene005643.t1 |
| 8683 | CDS | 132528 | 132719 | 132528 | ID=cds.MS.gene005643.t1;Parent=MS.gene005643.t1 |
| 8683 | exon | 132838 | 133246 | 132838 | ID=MS.gene005643.t1.exon5;Parent=MS.gene005643.t1 |
| 8683 | CDS | 132838 | 133246 | 132838 | ID=cds.MS.gene005643.t1;Parent=MS.gene005643.t1 |
| Gene Sequence |
| Protein sequence |
