AlfalfaGEDB | MS.gene00577

M. sativa cultivar XinJiangDaYe / MS.gene00577

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00577.t1	ABE91851.1	98.4	626	10	0	1	626	66	691	0.00E+00	1268.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00577.t1	Q9SY66	79.9	622	125	0	1	622	53	674	1.3e-308	1059.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00577.t1	Q1SKU8	98.4	626	10	0	1	626	66	691	0.0e+00	1268.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00577.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00577.t1	MTR_4g035820	42.517	294	158	5	1	291	80	365	1.32e-64	225
MS.gene00577.t1	MTR_4g035820	46.316	95	51	0	380	474	327	421	2.37e-20	95.9
MS.gene00577.t1	MTR_3g450850	42.373	236	129	2	1	230	52	286	1.78e-61	208
MS.gene00577.t1	MTR_3g012160	49.462	93	47	0	139	231	1	93	1.98e-28	109
MS.gene00577.t1	MTR_6g051425	29.151	271	185	4	4	271	25	291	6.62e-28	115
MS.gene00577.t1	MTR_6g014355	39.344	122	72	1	63	182	5	126	2.50e-21	94.0
MS.gene00577.t1	MTR_1g070355	27.778	234	158	7	2	232	80	305	6.54e-20	94.0
MS.gene00577.t1	MTR_6g022080	34.351	131	75	5	7	133	96	219	1.16e-14	74.7
MS.gene00577.t1	MTR_0402s0040	32.143	168	108	5	2	169	32	193	1.23e-13	73.9
MS.gene00577.t1	MTR_7g446520	24.231	260	174	4	2	260	94	331	1.33e-12	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00577.t1	AT1G10240	79.904	622	125	0	1	622	53	674	0.0	1090
MS.gene00577.t1	AT1G10240	79.904	622	125	0	1	622	53	674	0.0	1090
MS.gene00577.t1	AT5G28530	42.097	620	342	6	1	608	60	674	2.10e-171	504
MS.gene00577.t1	AT5G28530	42.097	620	338	6	1	608	60	670	5.97e-171	503
MS.gene00577.t1	AT5G28530	42.097	620	338	6	1	608	60	670	5.97e-171	503
MS.gene00577.t1	AT5G28530	38.361	610	316	8	1	608	60	611	1.22e-136	413
MS.gene00577.t1	AT5G28530	38.361	610	312	8	1	608	60	607	2.34e-136	412
MS.gene00577.t1	AT4G38180	30.732	615	397	13	2	597	79	683	6.11e-81	271
MS.gene00577.t1	AT4G15090	29.479	614	396	14	2	596	57	652	1.89e-76	260
MS.gene00577.t1	AT4G15090	29.479	614	396	14	2	596	57	652	1.89e-76	260

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Find 129 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGTGACGCGCCATTC+TGG	0.316021	2.1:-76228751	None:intergenic
AAATCTAGGGTTTCTTCTTC+TGG	0.296205	2.1:-76229006	None:intergenic
AAATTCCAGAAAATTCAAAC+TGG	0.489969	2.1:-76230842	None:intergenic
AAGAATGTGCAGAAATATTA+AGG	0.303262	2.1:+76229032	MS.gene00577:CDS
AAGGAGGTCGCAGAGTTTAC+TGG	0.359371	2.1:+76230784	MS.gene00577:CDS
AAGTTCATGATTATGGTGGT+TGG	0.589394	2.1:-76228776	None:intergenic
AATAGAAAATCTTCCAGATG+TGG	0.584217	2.1:+76228682	MS.gene00577:CDS
AATAGAGAAGCCGCAGGTCT+TGG	0.423335	2.1:-76228539	None:intergenic
ACCGAAGGAAAAGACGGTGT+TGG	0.619616	2.1:+76228574	MS.gene00577:CDS
ACCGTTTAGAAAATATTGCC+TGG	0.526747	2.1:+76229100	MS.gene00577:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGAAAATCTTCCAGATG+TGG	+	chr2.1:76228682-76228701	MS.gene00577:CDS	30.0%
AGAAAATGGCTTCTTAGATA+TGG	-	chr2.1:76230193-76230212	None:intergenic	30.0%
AGCTTATAATTCCTTCATGA+GGG	-	chr2.1:76230812-76230831	None:intergenic	30.0%
ATAAAAAAACTGCACTGTCT+TGG	+	chr2.1:76229461-76229480	MS.gene00577:intron	30.0%
ATAAGCAAAACCACTGAATT+TGG	+	chr2.1:76228724-76228743	MS.gene00577:CDS	30.0%
ATCTAATCGTTCTTTAGACT+TGG	-	chr2.1:76231054-76231073	None:intergenic	30.0%
ATTTCAGAAAAGAATCCAAG+GGG	-	chr2.1:76229381-76229400	None:intergenic	30.0%
CAATGATCATTCACATTTCA+TGG	+	chr2.1:76230360-76230379	MS.gene00577:intron	30.0%
CCAAAATTCACAGAAAGATA+AGG	-	chr2.1:76230521-76230540	None:intergenic	30.0%
GAAGATATCATACAATTGGA+TGG	-	chr2.1:76229139-76229158	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	76228493	76231172	76228493	ID=MS.gene00577
chr2.1	mRNA	76228493	76231172	76228493	ID=MS.gene00577.t1;Parent=MS.gene00577
chr2.1	exon	76228493	76229314	76228493	ID=MS.gene00577.t1.exon1;Parent=MS.gene00577.t1
chr2.1	CDS	76228493	76229314	76228493	ID=cds.MS.gene00577.t1;Parent=MS.gene00577.t1
chr2.1	exon	76229866	76230309	76229866	ID=MS.gene00577.t1.exon2;Parent=MS.gene00577.t1
chr2.1	CDS	76229866	76230309	76229866	ID=cds.MS.gene00577.t1;Parent=MS.gene00577.t1
chr2.1	exon	76230558	76231172	76230558	ID=MS.gene00577.t1.exon3;Parent=MS.gene00577.t1
chr2.1	CDS	76230558	76231172	76230558	ID=cds.MS.gene00577.t1;Parent=MS.gene00577.t1

Gene Sequence

>MS.gene00577

ATGTTTCCCACTCACGATGCTGCTTATGACTTCTATACTCATTTTGCCAAGACCTGCGGCTTCTCTATTAGACGTCATCGTACCGAAGGAAAAGACGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGCCAAATCATCAACCCAAACTAAGCCTCAACGAAATAGAAAATCTTCCAGATGTGGTTGTCAGGCTTATATGCGCATAAGCAAAACCACTGAATTTGGGCCTCCAGAATGGCGCGTCACTGGTTTTGCCAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATATCAGATGCTGACAAAAATCGGATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGACTTATGGAGCTTGAGAAGTGCGTCGAACCTGGATATTTGCCTTTTACTGAAAAGGACGTAAGGAATTTACTCCAGTCATTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATTTGTTAAGAATGTGCAGAAATATTAAGGACAAAGATCCTAATTTTAAATTTGAGTACACCCTTGATGCAAACAACCGTTTAGAAAATATTGCCTGGTCGTATGCCTCATCCATCCAATTGTATGATATCTTCGGTGATGCTGTGGTGTTTGATACAACACATCGTCTCACTGCATTTGACATGCCGCTGGGGATATGGGTTGGGATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCAAGATGAAACTGTCCGGTCATTTTCCTGGGCCATAAAGGTTGTTAATCAATAACTTATTAGCGTCTATATCATTTGGTTTTTGATTCAAATTGTGTTGTGGCCCCTTGGATTCTTTTCTGAAATAATACTGGTGTGGCTTAATTGTGTTGTGACAACAAATTTTATATCGAAGATTTTGTAGCTATAAAAAAACTGCACTGTCTTGGATATACCAAATGGAGGTTAATACAAATCAAAGCCTACACTTTGGAAATGTATGCAAGCGCCTTGTGCTAGTTTGTTTTTTTTCCCATTTCTTTTTATTCCAATTTTATAAAATGGTGAAGGTACGTCAGCTGTGGATGATTACATCTTTCTTTTATTTTTACTCCCTTGTGGAATGTTCATAAATTTTTATGCAAGCGCCTTGTGCTAGTTTTTTTTTTCCCATTTCTTTTTATTCCAATTTTATAAAATGGTGAAGGTACTTCAGCTGTGGATGATTACATCTTTCTTTTATTTTTACTCCCTTGTGGAATGTTCATAAATTTTTTAGAAGTTCAACCATTCTTTAATTTACACTGGTTTTTTTATTCACCTTCTTGGTAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGATCAAAATATTTGTCTCAAAGAAGCACTATCTGCAGAAATGCTGATGACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCGTCTTGGTTCAATGCTGTTCTAGGTGAACGCTACAATAACTGGAAGGCTGAGTTTTATAGACTTTATAATCTTGAATCAGTTGACGACTTTGAACTAGGCTGGAGGGAGATGGTCTGTTCTTTTGGGCTGCATTCCAATCGACACATTGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATCTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAACGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGTATTATATCTTTCTGTCTCTCATGTTTTGATTTTTTTACATTGGATTTTCAATGATCATTCACATTTCATGGAGTCACTTTGTTGAACATGTATTAAATCTCTCTGTCTATCATGTTTTAATTTTTTTTACATTTGATTTTCAATGATTATTGACAGTTCATAGAATCATAGAGTGAACTTTATCCTACTTTTTGGAGATACTAAATCCTTATCTTTCTGTGAATTTTGGTTCGCTTTGCACAACAGGCAGCTGTTGCTGTTGATTTTAAAGATCAAACTGGTGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTAGCCTCAAAACAGGAGCCCCCATGGAATCGCACGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCGAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAGAGTTTACTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGCTTTCAAATCCCAGATGCATATCTTCCCATCCGATGGCGTCGTATCAGTGTGCCTTCTTCTAAGATTCTTCAAAATGCACCTAGCGATCATGCCGAAAGAGTTAAGCTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATGGCAACAGACCAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATGCTTCTACCATTAGGAATCTATGA

Protein sequence

>MS.gene00577.t1

MFPTHDAAYDFYTHFAKTCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSSTQTKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKDKDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLQDETVRSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMLMTKHAFCIWMIVAKFPSWFNAVLGERYNNWKAEFYRLYNLESVDDFELGWREMVCSFGLHSNRHIVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQAAVAVDFKDQTGEQQTMQQNLQNVSLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRRVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKILQNAPSDHAERVKLFQNMVSSLITESAKSKERLDMATDQVSILLSRIREQPISLQCARDASTIRNL