AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005828.t1 MTR_1g492790 97.431 506 7 3 1 505 1 501 0.0 1026
MS.gene005828.t1 MTR_1g060990 39.012 405 186 16 10 402 27 382 4.46e-74 243
MS.gene005828.t1 MTR_1g098900 34.853 307 153 10 117 383 56 355 7.27e-42 159
MS.gene005828.t1 MTR_1g098900 40.541 111 62 3 98 207 436 543 5.00e-19 90.9
MS.gene005828.t1 MTR_1g098870 30.969 423 218 11 99 476 36 429 1.31e-35 140
MS.gene005828.t1 MTR_1g098870 47.525 101 51 2 110 209 364 463 4.30e-19 90.9
MS.gene005828.t1 MTR_6g035370 61.957 92 34 1 117 208 54 144 2.67e-31 128
MS.gene005828.t1 MTR_6g035370 45.652 92 48 2 114 204 460 550 1.18e-18 89.7
MS.gene005828.t1 MTR_2g026725 27.193 228 116 8 307 492 114 333 2.35e-14 75.1
MS.gene005828.t1 MTR_2g026725 39.785 93 54 2 113 204 257 348 2.71e-13 72.0
MS.gene005828.t1 MTR_7g114860 42.268 97 45 3 118 204 381 476 2.10e-13 72.8
MS.gene005828.t1 MTR_1g081180 45.122 82 42 2 110 189 410 490 6.66e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005828.t1 AT5G03680 42.455 391 176 9 118 481 119 487 1.33e-85 275
MS.gene005828.t1 AT3G10000 39.071 366 191 12 40 399 15 354 4.49e-65 218
MS.gene005828.t1 AT3G10000 37.158 366 188 13 40 399 15 344 9.01e-57 196
MS.gene005828.t1 AT1G76890 31.696 448 215 12 114 488 37 466 9.71e-50 179
MS.gene005828.t1 AT1G76890 40.000 160 78 8 88 233 360 515 1.47e-19 92.4
MS.gene005828.t1 AT1G76880 54.701 117 46 2 97 213 46 155 8.05e-31 126
MS.gene005828.t1 AT1G76880 45.361 97 51 2 114 209 404 499 7.88e-18 87.0
MS.gene005828.t1 AT1G33240 44.318 88 47 2 118 204 435 521 2.93e-15 79.0
MS.gene005828.t1 AT1G33240 44.318 88 47 2 118 204 435 521 3.07e-15 79.0
MS.gene005828.t1 AT1G33240 44.318 88 47 2 118 204 396 482 3.86e-15 78.6
MS.gene005828.t1 AT5G28300 37.288 118 56 5 102 208 449 559 4.49e-13 72.0

Find 107 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGCTCTTACTCTTATT+TGG 0.155961 1.1:+67173199 None:intergenic
TTGTTGTATCATTTGCTTCT+TGG 0.177243 1.1:+67173182 None:intergenic
TGCATTTCTTTCCACTTCTT+TGG 0.203428 1.1:+67173890 None:intergenic
AGGATAATGGCTGAGGAATT+TGG 0.204963 1.1:-67173916 MS.gene005828:CDS
CCTTGTGGAATGAAATTTCT+AGG 0.236619 1.1:-67174933 MS.gene005828:intron
GAACATCAAGTAAGAGAAAA+AGG 0.239292 1.1:-67173070 MS.gene005828:CDS
AGGTGAAAGGATGGTTTATA+TGG 0.259177 1.1:-67173017 MS.gene005828:CDS
GATATTTGGATGATGGAGTT+TGG 0.262012 1.1:-67173048 MS.gene005828:CDS
AAACACAAGGCCTTGGTGTT+TGG 0.270837 1.1:-67172909 MS.gene005828:CDS
GAGCTGAGTGCAAGAAAATA+TGG 0.284773 1.1:-67172979 MS.gene005828:CDS
AACACAAGGCCTTGGTGTTT+GGG 0.305639 1.1:-67172908 MS.gene005828:CDS
TCTACTAGCTTTACCTTCCT+TGG 0.314459 1.1:+67173828 None:intergenic
GATCTTCTTGTTTAGGATAA+TGG 0.314988 1.1:-67173929 MS.gene005828:intron
TGGTTTATATGGGATTTAAT+AGG 0.331668 1.1:-67173006 MS.gene005828:CDS
ATAGGGTCATAGGAATAATT+TGG 0.333734 1.1:+67175246 None:intergenic
ATCAAGAAATACATGAACTT+TGG 0.336932 1.1:-67173306 MS.gene005828:CDS
GGATAATGGCTGAGGAATTT+GGG 0.344397 1.1:-67173915 MS.gene005828:CDS
GGTTTAGAAACTTCTGATAA+AGG 0.359679 1.1:-67175072 MS.gene005828:CDS
AAAACATCACCAACTATCAT+AGG 0.369956 1.1:+67175228 None:intergenic
GAGAAGATGAGTGACCTATA+TGG 0.371968 1.1:-67175375 None:intergenic
ATATTTGGATGATGGAGTTT+GGG 0.376772 1.1:-67173047 MS.gene005828:CDS
GATGGAGTTTGGGATGAAAT+AGG 0.383462 1.1:-67173037 MS.gene005828:CDS
TCAAGAAATACATGAACTTT+GGG 0.384682 1.1:-67173305 MS.gene005828:CDS
GTAGCAACAAAGGAAGCATT+AGG 0.385971 1.1:+67173709 None:intergenic
GCAGCTATAGTGGTATTTGT+AGG 0.401800 1.1:+67175153 None:intergenic
GAAGTTGTAAGAAAACATAT+TGG 0.406391 1.1:-67173238 MS.gene005828:CDS
TCCTATGACCCTATGATAGT+TGG 0.417353 1.1:-67175237 MS.gene005828:CDS
AAGTTGTAAGAAAACATATT+GGG 0.418479 1.1:-67173237 MS.gene005828:CDS
TAGCAACAAAGGAAGCATTA+GGG 0.434533 1.1:+67173710 None:intergenic
GAGGCATGAGAGTTTGTGTT+TGG 0.435521 1.1:+67173751 None:intergenic
GAACCACCACCTTGTTTGTA+TGG 0.437886 1.1:-67175291 MS.gene005828:CDS
AGAAAGGGCAAAGTGGTCAT+AGG 0.438060 1.1:-67173504 MS.gene005828:CDS
ATATTAGTATGTCTCTTAGA+AGG 0.438578 1.1:-67172952 MS.gene005828:CDS
TATATGGGATTTAATAGGAA+TGG 0.452119 1.1:-67173001 MS.gene005828:CDS
GATCCTCCGGTAGCCCATAT+AGG 0.456344 1.1:+67175361 None:intergenic
ACCAACTATCATAGGGTCAT+AGG 0.456713 1.1:+67175236 None:intergenic
TGCAGCAGCAGCAGCTATAG+TGG 0.457554 1.1:+67175143 None:intergenic
ATATTATCCACACTTTCAAA+AGG 0.458934 1.1:+67173148 None:intergenic
GCTTCTACTGCATTCTGTGT+AGG 0.459654 1.1:-67175093 MS.gene005828:CDS
TATTCATAGATGGACAGAAA+TGG 0.466542 1.1:-67173128 MS.gene005828:CDS
AGAACAAGAGATGGCATCAA+AGG 0.471241 1.1:-67173365 MS.gene005828:CDS
AGAAGATGAGTGACCTATAT+GGG 0.473607 1.1:-67175374 None:intergenic
TTTCAAACTTGATACAACTA+AGG 0.475487 1.1:-67173102 MS.gene005828:CDS
ATTAACCAAGAAAATACTAA+TGG 0.483532 1.1:-67173667 MS.gene005828:CDS
ATCAACCGCCGGAGATCCTC+CGG 0.484296 1.1:+67175348 None:intergenic
TTATTGAGACTCAAGATGCT+TGG 0.485535 1.1:-67173420 MS.gene005828:CDS
ATGAAGTCGTCGAAGGAGAA+AGG 0.490837 1.1:-67173520 MS.gene005828:CDS
AAACAAGGTGGTGGTTCTGC+TGG 0.491751 1.1:+67175297 None:intergenic
GGTGAAAGGATGGTTTATAT+GGG 0.497182 1.1:-67173016 MS.gene005828:CDS
GGATGAAATAGGTGAAAGGA+TGG 0.499715 1.1:-67173026 MS.gene005828:CDS
GTGTGGATAATATTCATAGA+TGG 0.500320 1.1:-67173138 MS.gene005828:CDS
CTTGTTTAGGATAATGGCTG+AGG 0.502416 1.1:-67173923 MS.gene005828:intron
ATAGGAGGGCAAGGAAAAGT+TGG 0.504848 1.1:-67173486 MS.gene005828:CDS
ACTTCTGATAAAGGATGGCT+TGG 0.509259 1.1:-67175063 MS.gene005828:CDS
TATTATCCACACTTTCAAAA+GGG 0.515340 1.1:+67173149 None:intergenic
TTGATTCATGTAACAACAGA+TGG 0.515630 1.1:-67175035 MS.gene005828:CDS
TAGAAACTTCTGATAAAGGA+TGG 0.515925 1.1:-67175068 MS.gene005828:CDS
CAGCTATAGTGGTATTTGTA+GGG 0.519351 1.1:+67175154 None:intergenic
TGAGACTCAAGATGCTTGGA+TGG 0.522893 1.1:-67173416 MS.gene005828:CDS
AGACAGCTTGAAGCAATATG+TGG 0.533898 1.1:-67173778 MS.gene005828:CDS
TGAAGTCGTCGAAGGAGAAA+GGG 0.536001 1.1:-67173519 MS.gene005828:CDS
TGGCATCAAAGGAAGAAGAA+AGG 0.537348 1.1:-67173354 MS.gene005828:CDS
TTAGACTTTGTGAATACTTG+TGG 0.538073 1.1:+67173620 None:intergenic
GGAAGAGAAAAGAGTCAATG+AGG 0.550829 1.1:-67173333 MS.gene005828:CDS
AGAGAAAGAGTCTCTTGTCT+AGG 0.553492 1.1:+67175012 None:intergenic
ATGGGCTACCGGAGGATCTC+CGG 0.559641 1.1:-67175356 MS.gene005828:CDS
AAACATCACCAACTATCATA+GGG 0.561437 1.1:+67175229 None:intergenic
TTGAGTTTGAGTAGCAACAA+AGG 0.562015 1.1:+67173699 None:intergenic
AAGGGCAAAGTGGTCATAGG+AGG 0.562963 1.1:-67173501 MS.gene005828:CDS
GAGTGACCTATATGGGCTAC+CGG 0.564245 1.1:-67175367 MS.gene005828:CDS
GGTATTTGTAGGGTTAACAG+TGG 0.564956 1.1:+67175164 None:intergenic
GGTAAAGCTAGTAGACAAGA+TGG 0.568681 1.1:-67173820 MS.gene005828:CDS
CCTAGAAATTTCATTCCACA+AGG 0.573860 1.1:+67174933 None:intergenic
TCATAGGAATAATTTGGTGG+AGG 0.577820 1.1:+67175252 None:intergenic
GAATTTGGGTACCAAAGAAG+TGG 0.582190 1.1:-67173901 MS.gene005828:CDS
CAGTGGAGGAATAGTCATAG+TGG 0.586600 1.1:+67175181 None:intergenic
TTGATGATGTTATCAACCGC+CGG 0.588660 1.1:+67175337 None:intergenic
AGGGCAAGGAAAAGTTGGAG+AGG 0.591096 1.1:-67173481 MS.gene005828:CDS
ATTTGTAGGGTTAACAGTGG+AGG 0.594970 1.1:+67175167 None:intergenic
AGCTGAGTGCAAGAAAATAT+GGG 0.595363 1.1:-67172978 MS.gene005828:CDS
TTTGGGATGAAATAGGTGAA+AGG 0.600563 1.1:-67173030 MS.gene005828:CDS
TATTACAAGAAGACCAAGGA+AGG 0.601931 1.1:-67173841 MS.gene005828:CDS
GGGTCATAGGAATAATTTGG+TGG 0.603660 1.1:+67175249 None:intergenic
AAGTTGGAGAGGTAAAGTTG+AGG 0.607935 1.1:-67173470 MS.gene005828:CDS
ATAATCAGAAAGCACCCTTG+TGG 0.619380 1.1:-67174948 MS.gene005828:CDS
AAAGTGGTCATAGGAGGGCA+AGG 0.623960 1.1:-67173495 MS.gene005828:CDS
GGTGAGTGAAGCTACTACGA+GGG 0.624158 1.1:+67175202 None:intergenic
TGAACAAAGAGAACAAGAGA+TGG 0.625612 1.1:-67173374 MS.gene005828:CDS
AGCAACAAAGGAAGCATTAG+GGG 0.629023 1.1:+67173711 None:intergenic
CTTAGAAGGACAGTGGACTG+TGG 0.637596 1.1:-67172938 MS.gene005828:CDS
AAGAAGTGGAAAGAAATGCA+AGG 0.641850 1.1:-67173887 MS.gene005828:CDS
AGGGCAAAGTGGTCATAGGA+GGG 0.643035 1.1:-67173500 MS.gene005828:CDS
CCACCATACAAACAAGGTGG+TGG 0.656823 1.1:+67175288 None:intergenic
ACACACTATGAAGTCGTCGA+AGG 0.660577 1.1:-67173527 MS.gene005828:CDS
TATGTCTCTTAGAAGGACAG+TGG 0.662720 1.1:-67172945 MS.gene005828:CDS
CTCATCTGAAAACAACGATG+AGG 0.668787 1.1:-67173566 MS.gene005828:CDS
CCACCACCTTGTTTGTATGG+TGG 0.671674 1.1:-67175288 MS.gene005828:CDS
AGCTTAAGTCCCAAACACCA+AGG 0.671681 1.1:+67172899 None:intergenic
AACTTGATACAACTAAGGAG+TGG 0.671997 1.1:-67173097 MS.gene005828:CDS
TCGAAGGAGAAAGGGCAAAG+TGG 0.682624 1.1:-67173511 MS.gene005828:CDS
GCAACACCACCATACAAACA+AGG 0.686159 1.1:+67175282 None:intergenic
GGCTACCGGAGGATCTCCGG+CGG 0.699131 1.1:-67175353 MS.gene005828:CDS
TGACCTATATGGGCTACCGG+AGG 0.701402 1.1:-67175364 MS.gene005828:CDS
CAAGTATTACAAGAAGACCA+AGG 0.709647 1.1:-67173845 MS.gene005828:CDS
CTAGAAATTTCATTCCACAA+GGG 0.711484 1.1:+67174934 None:intergenic
TGGTGAGTGAAGCTACTACG+AGG 0.746302 1.1:+67175201 None:intergenic
ACACCACCATACAAACAAGG+TGG 0.760464 1.1:+67175285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTAAATTGTAGTTA+CGG - chr1.1:67174015-67174034 MS.gene005828:intron 10.0%
!!! TTTATTTCACTTTTTTTTTT+TGG - chr1.1:67173377-67173396 MS.gene005828:CDS 10.0%
!! ATCATAATAAAAAAAACACA+TGG + chr1.1:67173490-67173509 None:intergenic 15.0%
!! AAGTTGTAAGAAAACATATT+GGG - chr1.1:67175009-67175028 MS.gene005828:CDS 20.0%
!! ATTAACCAAGAAAATACTAA+TGG - chr1.1:67174579-67174598 MS.gene005828:intron 20.0%
!! GACAAAAAAGAAAATTATCA+TGG + chr1.1:67173442-67173461 None:intergenic 20.0%
!! TTAGTGTCTTAATTAATTAC+TGG - chr1.1:67173342-67173361 MS.gene005828:CDS 20.0%
!!! TTTTGTTTGAAAATATCATG+TGG - chr1.1:67173849-67173868 MS.gene005828:CDS 20.0%
! AGTAAGAGAAAAAGGATATT+TGG - chr1.1:67175184-67175203 MS.gene005828:CDS 25.0%
! AGTATATACAAAACAAAGAC+AGG + chr1.1:67173640-67173659 None:intergenic 25.0%
! ATATTAGTATGTCTCTTAGA+AGG - chr1.1:67175294-67175313 MS.gene005828:CDS 25.0%
! ATATTATCCACACTTTCAAA+AGG + chr1.1:67175101-67175120 None:intergenic 25.0%
! ATCAAGAAATACATGAACTT+TGG - chr1.1:67174940-67174959 MS.gene005828:CDS 25.0%
! CAATGAATGATTTAGTATCA+TGG + chr1.1:67173584-67173603 None:intergenic 25.0%
! GAAGTTGTAAGAAAACATAT+TGG - chr1.1:67175008-67175027 MS.gene005828:CDS 25.0%
! TATATGGGATTTAATAGGAA+TGG - chr1.1:67175245-67175264 MS.gene005828:CDS 25.0%
! TATTATCCACACTTTCAAAA+GGG + chr1.1:67175100-67175119 None:intergenic 25.0%
! TCAAGAAATACATGAACTTT+GGG - chr1.1:67174941-67174960 MS.gene005828:CDS 25.0%
! TGGTTTATATGGGATTTAAT+AGG - chr1.1:67175240-67175259 MS.gene005828:CDS 25.0%
! TTTCAAACTTGATACAACTA+AGG - chr1.1:67175144-67175163 MS.gene005828:CDS 25.0%
!! ATTTTCTTGGTTAATTGTGA+AGG + chr1.1:67174574-67174593 None:intergenic 25.0%
AAAACATCACCAACTATCAT+AGG + chr1.1:67173021-67173040 None:intergenic 30.0%
AAACATCACCAACTATCATA+GGG + chr1.1:67173020-67173039 None:intergenic 30.0%
AAATCAAGTGATACTGTGAT+AGG + chr1.1:67173825-67173844 None:intergenic 30.0%
ATAGGGTCATAGGAATAATT+TGG + chr1.1:67173003-67173022 None:intergenic 30.0%
CTAGAAATTTCATTCCACAA+GGG + chr1.1:67173315-67173334 None:intergenic 30.0%
GAAAAAGGATATTTGGATGA+TGG - chr1.1:67175191-67175210 MS.gene005828:CDS 30.0%
GAACATCAAGTAAGAGAAAA+AGG - chr1.1:67175176-67175195 MS.gene005828:CDS 30.0%
GATACTAAATCATTCATTGC+AGG - chr1.1:67173585-67173604 MS.gene005828:CDS 30.0%
GGTTTAGAAACTTCTGATAA+AGG - chr1.1:67173174-67173193 MS.gene005828:CDS 30.0%
GTGATTGTAATTGAAACCTT+GGG + chr1.1:67173908-67173927 None:intergenic 30.0%
GTGTGGATAATATTCATAGA+TGG - chr1.1:67175108-67175127 MS.gene005828:CDS 30.0%
TAGAAACTTCTGATAAAGGA+TGG - chr1.1:67173178-67173197 MS.gene005828:CDS 30.0%
TATTCATAGATGGACAGAAA+TGG - chr1.1:67175118-67175137 MS.gene005828:CDS 30.0%
TGATTGTAATTGAAACCTTG+GGG + chr1.1:67173907-67173926 None:intergenic 30.0%
TGTGATTGTAATTGAAACCT+TGG + chr1.1:67173909-67173928 None:intergenic 30.0%
TTAGACTTTGTGAATACTTG+TGG + chr1.1:67174629-67174648 None:intergenic 30.0%
TTGAAAATATCATGTGGTCT+TGG - chr1.1:67173855-67173874 MS.gene005828:CDS 30.0%
TTGATTCATGTAACAACAGA+TGG - chr1.1:67173211-67173230 MS.gene005828:CDS 30.0%
TTGTTGTATCATTTGCTTCT+TGG + chr1.1:67175067-67175086 None:intergenic 30.0%
! CAACACCATTAGTATTTTCT+TGG + chr1.1:67174587-67174606 None:intergenic 30.0%
! CTTTTGTGATTGAAAATGAC+AGG - chr1.1:67173409-67173428 MS.gene005828:CDS 30.0%
! GATCTTCTTGTTTAGGATAA+TGG - chr1.1:67174317-67174336 MS.gene005828:intron 30.0%
! TGTTAGTGTTTTGTACTGAA+AGG + chr1.1:67173791-67173810 None:intergenic 30.0%
!! ATATTTGGATGATGGAGTTT+GGG - chr1.1:67175199-67175218 MS.gene005828:CDS 30.0%
!! GGTAATTTTGTCTAAAGTTG+AGG + chr1.1:67174517-67174536 None:intergenic 30.0%
!!! CTGTCATTTTCAATCACAAA+AGG + chr1.1:67173411-67173430 None:intergenic 30.0%
AACTTGATACAACTAAGGAG+TGG - chr1.1:67175149-67175168 MS.gene005828:CDS 35.0%
AAGAAGTGGAAAGAAATGCA+AGG - chr1.1:67174359-67174378 MS.gene005828:intron 35.0%
AGCTGAGTGCAAGAAAATAT+GGG - chr1.1:67175268-67175287 MS.gene005828:CDS 35.0%
AGGTGAAAGGATGGTTTATA+TGG - chr1.1:67175229-67175248 MS.gene005828:CDS 35.0%
CAAGTATTACAAGAAGACCA+AGG - chr1.1:67174401-67174420 MS.gene005828:intron 35.0%
CAGCTATAGTGGTATTTGTA+GGG + chr1.1:67173095-67173114 None:intergenic 35.0%
CCTAGAAATTTCATTCCACA+AGG + chr1.1:67173316-67173335 None:intergenic 35.0%
CCTTGTGGAATGAAATTTCT+AGG - chr1.1:67173313-67173332 MS.gene005828:CDS 35.0%
GCACAAAGCTGTAATAAATG+TGG - chr1.1:67174124-67174143 MS.gene005828:intron 35.0%
GGTGAAAGGATGGTTTATAT+GGG - chr1.1:67175230-67175249 MS.gene005828:CDS 35.0%
TATCCCACAAATCTTTGCAT+TGG - chr1.1:67173953-67173972 MS.gene005828:intron 35.0%
TATTACAAGAAGACCAAGGA+AGG - chr1.1:67174405-67174424 MS.gene005828:intron 35.0%
TGAACAAAGAGAACAAGAGA+TGG - chr1.1:67174872-67174891 MS.gene005828:intron 35.0%
TGCATTTCTTTCCACTTCTT+TGG + chr1.1:67174359-67174378 None:intergenic 35.0%
TTATTGAGACTCAAGATGCT+TGG - chr1.1:67174826-67174845 MS.gene005828:intron 35.0%
TTCATTGCAGGTGCAAATTA+AGG - chr1.1:67173597-67173616 MS.gene005828:CDS 35.0%
TTGAGTTTGAGTAGCAACAA+AGG + chr1.1:67174550-67174569 None:intergenic 35.0%
TTTGGGCTAAAGAAAAAGCA+TGG - chr1.1:67174958-67174977 MS.gene005828:CDS 35.0%
! GCTTTGTGATCTTCTTGTTT+AGG - chr1.1:67174310-67174329 MS.gene005828:intron 35.0%
! TAGTACAACTTTTTACCCCA+AGG - chr1.1:67173889-67173908 MS.gene005828:CDS 35.0%
! TCATAGGAATAATTTGGTGG+AGG + chr1.1:67172997-67173016 None:intergenic 35.0%
! TCTTGGCTCTTACTCTTATT+TGG + chr1.1:67175050-67175069 None:intergenic 35.0%
! TTGGGCTAAAGAAAAAGCAT+GGG - chr1.1:67174959-67174978 MS.gene005828:CDS 35.0%
! TTTGGGATGAAATAGGTGAA+AGG - chr1.1:67175216-67175235 MS.gene005828:CDS 35.0%
!! GATATTTGGATGATGGAGTT+TGG - chr1.1:67175198-67175217 MS.gene005828:CDS 35.0%
!! TAGCAACAAAGGAAGCATTA+GGG + chr1.1:67174539-67174558 None:intergenic 35.0%
!! TGAATACCCTTTTGAAAGTG+TGG - chr1.1:67175091-67175110 MS.gene005828:CDS 35.0%
AAGTTGGAGAGGTAAAGTTG+AGG - chr1.1:67174776-67174795 MS.gene005828:intron 40.0%
ACCAACTATCATAGGGTCAT+AGG + chr1.1:67173013-67173032 None:intergenic 40.0%
ACTGTGGAGTCAAAAACACA+AGG - chr1.1:67175324-67175343 MS.gene005828:CDS 40.0%
ACTTCTGATAAAGGATGGCT+TGG - chr1.1:67173183-67173202 MS.gene005828:CDS 40.0%
AGAACAAGAGATGGCATCAA+AGG - chr1.1:67174881-67174900 MS.gene005828:intron 40.0%
AGACAGCTTGAAGCAATATG+TGG - chr1.1:67174468-67174487 MS.gene005828:intron 40.0%
AGAGAAAGAGTCTCTTGTCT+AGG + chr1.1:67173237-67173256 None:intergenic 40.0%
ATTTGTAGGGTTAACAGTGG+AGG + chr1.1:67173082-67173101 None:intergenic 40.0%
CCTCCAATGCAAAGATTTGT+GGG + chr1.1:67173959-67173978 None:intergenic 40.0%
CTCATCTGAAAACAACGATG+AGG - chr1.1:67174680-67174699 MS.gene005828:intron 40.0%
GAATTTGGGTACCAAAGAAG+TGG - chr1.1:67174345-67174364 MS.gene005828:intron 40.0%
GAGCTGAGTGCAAGAAAATA+TGG - chr1.1:67175267-67175286 MS.gene005828:CDS 40.0%
GCAGCTATAGTGGTATTTGT+AGG + chr1.1:67173096-67173115 None:intergenic 40.0%
GCTGAGCGAATTAGGTTAAT+AGG + chr1.1:67173668-67173687 None:intergenic 40.0%
GGAAGAGAAAAGAGTCAATG+AGG - chr1.1:67174913-67174932 MS.gene005828:intron 40.0%
GGATGAAATAGGTGAAAGGA+TGG - chr1.1:67175220-67175239 MS.gene005828:CDS 40.0%
GGGTCATAGGAATAATTTGG+TGG + chr1.1:67173000-67173019 None:intergenic 40.0%
GGTAAAGCTAGTAGACAAGA+TGG - chr1.1:67174426-67174445 MS.gene005828:intron 40.0%
GGTATTTGTAGGGTTAACAG+TGG + chr1.1:67173085-67173104 None:intergenic 40.0%
GTGACTATACTTACTTGCAC+TGG - chr1.1:67173551-67173570 MS.gene005828:CDS 40.0%
TATGTCTCTTAGAAGGACAG+TGG - chr1.1:67175301-67175320 MS.gene005828:CDS 40.0%
TCCTATGACCCTATGATAGT+TGG - chr1.1:67173009-67173028 MS.gene005828:CDS 40.0%
TCCTCCAATGCAAAGATTTG+TGG + chr1.1:67173960-67173979 None:intergenic 40.0%
TGGCATCAAAGGAAGAAGAA+AGG - chr1.1:67174892-67174911 MS.gene005828:intron 40.0%
TTGCATTGGAGGAGATCAAA+GGG - chr1.1:67173967-67173986 MS.gene005828:intron 40.0%
TTTGCATTGGAGGAGATCAA+AGG - chr1.1:67173966-67173985 MS.gene005828:intron 40.0%
! AGGATAATGGCTGAGGAATT+TGG - chr1.1:67174330-67174349 MS.gene005828:intron 40.0%
! CTTGTTTAGGATAATGGCTG+AGG - chr1.1:67174323-67174342 MS.gene005828:intron 40.0%
! GATGGAGTTTGGGATGAAAT+AGG - chr1.1:67175209-67175228 MS.gene005828:CDS 40.0%
! GGATAATGGCTGAGGAATTT+GGG - chr1.1:67174331-67174350 MS.gene005828:intron 40.0%
!! AGCAACAAAGGAAGCATTAG+GGG + chr1.1:67174538-67174557 None:intergenic 40.0%
!! ATAATCAGAAAGCACCCTTG+TGG - chr1.1:67173298-67173317 MS.gene005828:CDS 40.0%
!! CTCATCGTTGTTTTCAGATG+AGG + chr1.1:67174682-67174701 None:intergenic 40.0%
!! GTAGCAACAAAGGAAGCATT+AGG + chr1.1:67174540-67174559 None:intergenic 40.0%
!! TCTACTAGCTTTACCTTCCT+TGG + chr1.1:67174421-67174440 None:intergenic 40.0%
!! TTGATGATGTTATCAACCGC+CGG + chr1.1:67172912-67172931 None:intergenic 40.0%
AAACTCCAATAGCCCTAGCT+AGG + chr1.1:67173693-67173712 None:intergenic 45.0%
ACACACTATGAAGTCGTCGA+AGG - chr1.1:67174719-67174738 MS.gene005828:intron 45.0%
ACACCACCATACAAACAAGG+TGG + chr1.1:67172964-67172983 None:intergenic 45.0%
AGAAAGGGCAAAGTGGTCAT+AGG - chr1.1:67174742-67174761 MS.gene005828:intron 45.0%
AGCTTAAGTCCCAAACACCA+AGG + chr1.1:67175350-67175369 None:intergenic 45.0%
ATAGGAGGGCAAGGAAAAGT+TGG - chr1.1:67174760-67174779 MS.gene005828:intron 45.0%
ATGAAGTCGTCGAAGGAGAA+AGG - chr1.1:67174726-67174745 MS.gene005828:intron 45.0%
CAGTGGAGGAATAGTCATAG+TGG + chr1.1:67173068-67173087 None:intergenic 45.0%
CCCACAAATCTTTGCATTGG+AGG - chr1.1:67173956-67173975 MS.gene005828:intron 45.0%
GAGGCATGAGAGTTTGTGTT+TGG + chr1.1:67174498-67174517 None:intergenic 45.0%
GAGTCAAAAACACAAGGCCT+TGG - chr1.1:67175330-67175349 MS.gene005828:CDS 45.0%
GCAACACCACCATACAAACA+AGG + chr1.1:67172967-67172986 None:intergenic 45.0%
GCTTCTACTGCATTCTGTGT+AGG - chr1.1:67173153-67173172 MS.gene005828:CDS 45.0%
TGAAGTCGTCGAAGGAGAAA+GGG - chr1.1:67174727-67174746 MS.gene005828:intron 45.0%
TGAGACTCAAGATGCTTGGA+TGG - chr1.1:67174830-67174849 MS.gene005828:intron 45.0%
! GAACCACCACCTTGTTTGTA+TGG - chr1.1:67172955-67172974 MS.gene005828:CDS 45.0%
!! AAACACAAGGCCTTGGTGTT+TGG - chr1.1:67175337-67175356 MS.gene005828:CDS 45.0%
!! AACACAAGGCCTTGGTGTTT+GGG - chr1.1:67175338-67175357 MS.gene005828:CDS 45.0%
AAAGTGGTCATAGGAGGGCA+AGG - chr1.1:67174751-67174770 MS.gene005828:intron 50.0%
AAGGGCAAAGTGGTCATAGG+AGG - chr1.1:67174745-67174764 MS.gene005828:intron 50.0%
AGCTACCTAGCTAGGGCTAT+TGG - chr1.1:67173685-67173704 MS.gene005828:CDS 50.0%
AGGGCAAAGTGGTCATAGGA+GGG - chr1.1:67174746-67174765 MS.gene005828:intron 50.0%
AGGGCAAGGAAAAGTTGGAG+AGG - chr1.1:67174765-67174784 MS.gene005828:intron 50.0%
ATTCGCTCAGCTACCTAGCT+AGG - chr1.1:67173677-67173696 MS.gene005828:CDS 50.0%
CCACCATACAAACAAGGTGG+TGG + chr1.1:67172961-67172980 None:intergenic 50.0%
GCTAGGTAGCTGAGCGAATT+AGG + chr1.1:67173676-67173695 None:intergenic 50.0%
GGTGAGTGAAGCTACTACGA+GGG + chr1.1:67173047-67173066 None:intergenic 50.0%
TCGAAGGAGAAAGGGCAAAG+TGG - chr1.1:67174735-67174754 MS.gene005828:intron 50.0%
TGGTGAGTGAAGCTACTACG+AGG + chr1.1:67173048-67173067 None:intergenic 50.0%
TTCGCTCAGCTACCTAGCTA+GGG - chr1.1:67173678-67173697 MS.gene005828:CDS 50.0%
! AAACAAGGTGGTGGTTCTGC+TGG + chr1.1:67172952-67172971 None:intergenic 50.0%
! CCACCACCTTGTTTGTATGG+TGG - chr1.1:67172958-67172977 MS.gene005828:CDS 50.0%
! GAGTGACCTATATGGGCTAC+CGG - chr1.1:67172879-67172898 MS.gene005828:CDS 50.0%
!! CTTAGAAGGACAGTGGACTG+TGG - chr1.1:67175308-67175327 MS.gene005828:CDS 50.0%
GATCCTCCGGTAGCCCATAT+AGG + chr1.1:67172888-67172907 None:intergenic 55.0%
TGCAGCAGCAGCAGCTATAG+TGG + chr1.1:67173106-67173125 None:intergenic 55.0%
! TGACCTATATGGGCTACCGG+AGG - chr1.1:67172882-67172901 MS.gene005828:CDS 55.0%
ATCAACCGCCGGAGATCCTC+CGG + chr1.1:67172901-67172920 None:intergenic 60.0%
! ATGGGCTACCGGAGGATCTC+CGG - chr1.1:67172890-67172909 MS.gene005828:CDS 60.0%
GGCTACCGGAGGATCTCCGG+CGG - chr1.1:67172893-67172912 MS.gene005828:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 67172877 67175391 67172877 ID=MS.gene005828
chr1.1 mRNA 67172877 67175391 67172877 ID=MS.gene005828.t1;Parent=MS.gene005828
chr1.1 exon 67174934 67175391 67174934 ID=MS.gene005828.t1.exon1;Parent=MS.gene005828.t1
chr1.1 CDS 67174934 67175391 67174934 ID=cds.MS.gene005828.t1;Parent=MS.gene005828.t1
chr1.1 exon 67172877 67173936 67172877 ID=MS.gene005828.t1.exon2;Parent=MS.gene005828.t1
chr1.1 CDS 67172877 67173936 67172877 ID=cds.MS.gene005828.t1;Parent=MS.gene005828.t1
Gene Sequence

>MS.gene005828

ATGAGTGACCTATATGGGCTACCGGAGGATCTCCGGCGGTTGATAACATCATCAAGAAACACTACACATCTACCAGCAGAACCACCACCTTGTTTGTATGGTGGTGTTGCTACTTTTCCTCCACCAAATTATTCCTATGACCCTATGATAGTTGGTGATGTTTTCTACCCTCGTAGTAGCTTCACTCACCACTATGACTATTCCTCCACTGTTAACCCTACAAATACCACTATAGCTGCTGCTGCTGCAGCAGCTTCTAATTCAGATCATGCTACTGCTTCTACTGCATTCTGTGTAGGTTTAGAAACTTCTGATAAAGGATGGCTTGGTAACTTTGATTCATGTAACAACAGATGGCCTAGACAAGAGACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGTATATCTTAGTGTCTTAATTAATTACTGGTTTAGCAAGCTTTTTATTTCACTTTTTTTTTTTGGAATTATTTCCTTTTGTGATTGAAAATGACAGGTTTTTTTCCATGATAATTTTCTTTTTTGTCTTGAGTGTTAAAGCTAACTGAAGATCCATGTGTTTTTTTTATTATGATATATTTCTAGTTTTGTCTAAGAATTTTCACTGACTTGTGTAGTGACTATACTTACTTGCACTGGTTTTTTTCCATGATACTAAATCATTCATTGCAGGTGCAAATTAAGGATTTCTCACACTGAAAGCCTGTCTTTGTTTTGTATATACTATAGTCCTATTAACCTAATTCGCTCAGCTACCTAGCTAGGGCTATTGGAGTTTTGTTAATTCAAATGCATATATTTGATGTTTCTGACATCATTAATGAAGAGATCAGAATGTTTTCATTATTTTAATCCTTTCAGTACAAAACACTAACATTAATATTCAGCCTATCACAGTATCACTTGATTTGATTTTTTGTTTGAAAATATCATGTGGTCTTGGTCTTCATTAATTAGTACAACTTTTTACCCCAAGGTTTCAATTACAATCACATATAATTTTCTAGTATTTCTTATATATCCCACAAATCTTTGCATTGGAGGAGATCAAAGGGTTTTGTAAGAGATTTGTTGACAATTTTAAATTTAAATTGTAGTTACGGTTGTATATTTTTTTATAATATTGTAGAGAATTATAATAAATTTGTTTCATTTTAAACAGCTAAATTTATTTAAACAACTCAAATATGCACAAAGCTGTAATAAATGTGGTTGATATAATATCGATGATTGCATTAGTGTTCTGATATTAATGACATAAAAAATCATTATGTTCAAAAATATTTTTAAAAAAAATTGCAATTAAATTTGTTGATGTGTTTTTTTTTCTACAAATTTTGTTGATGTTTTAATGTGTATAACATATAATATAATAGCTTTGTGATCTTCTTGTTTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAGCACTATAGATTTTTCAGACAGCTTGAAGCAATATGTGGAGAACCAAACACAAACTCTCATGCCTCAACTTTAGACAAAATTACCCCTAATGCTTCCTTTGTTGCTACTCAAACTCAAACCTTCACAATTAACCAAGAAAATACTAATGGTGTTGATCACAATTTGATCAATAACCACAAGTATTCACAAAGTCTAAGTTTCTCGAACTCGTCTGAATTTGAGACATCCTCATCTGAAAACAACGATGAGGATCTCTCAACTATTGCACACACTATGAAGTCGTCGAAGGAGAAAGGGCAAAGTGGTCATAGGAGGGCAAGGAAAAGTTGGAGAGGTAAAGTTGAGGAGATTGTAGATTCTCACATGAAAAATATTATTGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAACAAGAGATGGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGAGATTCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATACAACTTGAAGCACCAAATAAGAGTAAGAGCCAAGAAGCAAATGATACAACAAATTATGAATACCCTTTTGAAAGTGTGGATAATATTCATAGATGGACAGAAATGGAAATTTCAAACTTGATACAACTAAGGAGTGGTTTTGAACATCAAGTAAGAGAAAAAGGATATTTGGATGATGGAGTTTGGGATGAAATAGGTGAAAGGATGGTTTATATGGGATTTAATAGGAATGGAGCTGAGTGCAAGAAAATATGGGATGATATTAGTATGTCTCTTAGAAGGACAGTGGACTGTGGAGTCAAAAACACAAGGCCTTGGTGTTTGGGACTTAAGCTGACAGATGATGACGACCTTTGA
Protein sequence

>MS.gene005828.t1

MSDLYGLPEDLRRLITSSRNTTHLPAEPPPCLYGGVATFPPPNYSYDPMIVGDVFYPRSSFTHHYDYSSTVNPTNTTIAAAAAAASNSDHATASTAFCVGLETSDKGWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTNSHASTLDKITPNASFVATQTQTFTINQENTNGVDHNLINNHKYSQSLSFSNSSEFETSSSENNDEDLSTIAHTMKSSKEKGQSGHRRARKSWRGKVEEIVDSHMKNIIETQDAWMERMLSVVEQREQEMASKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGIQLEAPNKSKSQEANDTTNYEYPFESVDNIHRWTEMEISNLIQLRSGFEHQVREKGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDCGVKNTRPWCLGLKLTDDDDL