AlfalfaGEDB | MS.gene005829

M. sativa cultivar XinJiangDaYe / MS.gene005829

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005829.t1	RHN52264.1	90.9	88	5	1	22	109	292	376	5.70E-38	166.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005829.t1	F4J6F6	75.8	95	20	1	15	109	1056	1147	7.8e-36	151.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005829.t1	A0A072UB59	90.9	88	5	1	22	109	1058	1142	4.1e-38	166.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005829.t1	MTR_6g470940	90.909	88	5	1	22	109	1058	1142	5.44e-49	166
MS.gene005829.t1	MTR_4g035835	65.909	88	27	1	22	109	939	1023	1.50e-36	131
MS.gene005829.t1	MTR_5g069000	65.909	88	27	1	22	109	943	1027	2.81e-36	130
MS.gene005829.t1	MTR_1g069735	45.263	95	45	4	18	109	305	395	4.21e-17	75.5
MS.gene005829.t1	MTR_1g069735	45.263	95	45	4	18	109	305	395	5.11e-17	75.5
MS.gene005829.t1	MTR_1g069735	45.263	95	45	4	18	109	305	395	6.53e-17	75.1
MS.gene005829.t1	MTR_7g097150	44.211	95	46	4	18	109	305	395	1.15e-16	74.3
MS.gene005829.t1	MTR_1g075880	46.988	83	38	3	29	109	315	393	1.16e-16	74.3
MS.gene005829.t1	MTR_7g073520	44.186	86	42	2	22	107	297	376	1.69e-16	73.9
MS.gene005829.t1	MTR_1g442790	45.455	88	42	3	22	107	302	385	1.88e-16	73.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005829.t1	AT3G17850	80.460	87	14	1	23	109	1064	1147	1.28e-42	148
MS.gene005829.t1	AT5G62310	63.725	102	33	2	9	109	921	1019	4.29e-39	138
MS.gene005829.t1	AT1G45160	67.816	87	25	1	23	109	848	931	9.14e-37	131
MS.gene005829.t1	AT1G45160	67.816	87	25	1	23	109	848	931	9.61e-37	131
MS.gene005829.t1	AT1G48490	74.699	83	18	1	27	109	1008	1087	5.03e-36	129
MS.gene005829.t1	AT1G48490	74.699	83	18	1	27	109	1008	1087	5.03e-36	129
MS.gene005829.t1	AT1G48490	74.699	83	18	1	27	109	1008	1087	5.03e-36	129
MS.gene005829.t1	AT1G48490	74.699	83	18	1	27	109	1009	1088	5.03e-36	129
MS.gene005829.t1	AT3G23310	47.368	95	43	4	18	109	308	398	2.82e-18	79.0
MS.gene005829.t1	AT4G14350	46.809	94	43	4	19	109	306	395	1.89e-17	76.6

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Find 27 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAAACCTGAGTTGAA+GGG	0.612794	1.1:+67179939	None:intergenic
AAGCACATGATCTTATTGAT+CGG	0.593041	1.1:-67179761	MS.gene005829:CDS
ACCACACAGAAACATGTCAT+TGG	0.533806	1.1:-67180591	None:intergenic
ACTGCGGATTGGTGGTCTGT+TGG	0.420353	1.1:-67179996	MS.gene005829:CDS
AGAACGGAGGAAGGGAACGG+AGG	0.664935	1.1:-67180409	MS.gene005829:CDS
AGCTCCTGAGAACGGAGGAA+GGG	0.604860	1.1:-67180417	MS.gene005829:CDS
AGGAAGAAGCGTTCCGCTGT+TGG	0.509264	1.1:-67180389	MS.gene005829:CDS
ATCTCAGGAGCTAAGTAATC+AGG	0.429237	1.1:+67180362	None:intergenic
CAAAGTTAAACCTGAGTTGA+AGG	0.467216	1.1:+67179938	None:intergenic
CAGCGTATACTGCGGATTGG+TGG	0.508993	1.1:-67180004	MS.gene005829:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCACATGATCTTATTGAT+CGG	-	chr1.1:67180575-67180594	MS.gene005829:intron	30.0%
AATCAACCGAAAAAAACACT+CGG	+	chr1.1:67179895-67179914	None:intergenic	30.0%
TCCCATTTATATGTTTAAGG+TGG	-	chr1.1:67180027-67180046	MS.gene005829:intron	30.0%
TTCTTAATCGTAAGATACCT+TGG	-	chr1.1:67180524-67180543	MS.gene005829:intron	30.0%
TGTAAAACCACTAAATCAGC+AGG	+	chr1.1:67180229-67180248	None:intergenic	35.0%
ATCTCAGGAGCTAAGTAATC+AGG	+	chr1.1:67179977-67179996	None:intergenic	40.0%
ATTTAGCTACTCCACTGTCA+TGG	+	chr1.1:67179824-67179843	None:intergenic	40.0%
CTAAATCTCAGCATGGAGAT+TGG	-	chr1.1:67179838-67179857	MS.gene005829:intron	40.0%
GATTACTTAGCTCCTGAGAA+CGG	-	chr1.1:67179911-67179930	MS.gene005829:intron	40.0%
TGCTTCAAGACTCATTTCGT+CGG	+	chr1.1:67180560-67180579	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	67179758	67180600	67179758	ID=MS.gene005829
chr1.1	mRNA	67179758	67180600	67179758	ID=MS.gene005829.t1;Parent=MS.gene005829
chr1.1	exon	67180584	67180600	67180584	ID=MS.gene005829.t1.exon1;Parent=MS.gene005829.t1
chr1.1	CDS	67180584	67180600	67180584	ID=cds.MS.gene005829.t1;Parent=MS.gene005829.t1
chr1.1	exon	67180342	67180466	67180342	ID=MS.gene005829.t1.exon2;Parent=MS.gene005829.t1
chr1.1	CDS	67180342	67180466	67180342	ID=cds.MS.gene005829.t1;Parent=MS.gene005829.t1
chr1.1	exon	67179929	67180023	67179929	ID=MS.gene005829.t1.exon3;Parent=MS.gene005829.t1
chr1.1	CDS	67179929	67180023	67179929	ID=cds.MS.gene005829.t1;Parent=MS.gene005829.t1
chr1.1	exon	67179758	67179850	67179758	ID=MS.gene005829.t1.exon4;Parent=MS.gene005829.t1
chr1.1	CDS	67179758	67179850	67179758	ID=cds.MS.gene005829.t1;Parent=MS.gene005829.t1

Gene Sequence

>MS.gene005829

ATGTCATTGGTTCAATAGTAAGATTTTGGTAATGCTAATGTGTCAAACATTTTTGCAAGGCTACCATGACAGTGGAGTAGCTAAATCTCAGCATGGAGATTGGCTCTGCATTTGGTTTCGGTTTGGGCTAACAGCCGAGTGTTTTTTTCGGTTGATTACTTAGCTCCTGAGAACGGAGGAAGGGAACGGAGGAAGAAGCGTTCCGCTGTTGGCACACCTGATTACTTAGCTCCTGAGATACTTTTAGGAACTGGACATGGTTCGTATAGTCCCATTTATATGTTTAAGGTGGTTCATTTTCTGTTTTCTTTTTCATCGCTTAAAATGAAGGTTAAATTTGTCTATTACAGATTGTTTTTAGAAATGAAGTTGTTCTTAAATAAACTCGTAATGATGCTAAACAAAAATATGTAATGATTATTAGAGTGAACTAATGAAATTAAAAAACCCTTTTTGTTATTATAGTAGCCTGCTGATTTAGTGGTTTTACATTATATACTTGAAAATGTTCTCATGTATTCTTGTGTATTTTATTGCTAACATAACACCTGCAAAAATATTTGTTCAAATTTTGCAGCGTATACTGCGGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTCAACTCAGGTTTAACTTTGCTTCTTAGTGTGATGAATGTTTATATTTTTATTCTTTTGGTAGTTTCTTGAATTCTCACCACAGATTATGTAATTTTGTGTTTGTAGACTATATTTGATAATATTCTTAATCGTAAGATACCTTGGCCTGAAGTTCCCGACGAAATGAGTCTTGAAGCACATGATCTTATTGATCGGTAA

Protein sequence

>MS.gene005829.t1

MSLVQYRVFFSVDYLAPENGGRERRKKRSAVGTPDYLAPEILLGTGHAYTADWWSVGVILFELLVGIPPFNSGLTLLLSTIFDNILNRKIPWPEVPDEMSLEAHDLIDR