AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005869

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005869.t1 MTR_1g093095 97.279 294 8 0 1 294 1 294 0.0 603
MS.gene005869.t1 MTR_1g112270 35.862 145 78 5 107 249 65 196 1.94e-20 91.7
MS.gene005869.t1 MTR_4g059870 34.507 142 81 4 109 249 61 191 2.21e-20 91.3
MS.gene005869.t1 MTR_1g112270 35.862 145 78 5 107 249 76 207 2.26e-20 91.3
MS.gene005869.t1 MTR_1g094115 36.429 140 74 5 112 249 56 182 3.57e-20 90.5
MS.gene005869.t1 MTR_1g094115 35.172 145 79 5 107 249 68 199 4.51e-20 90.5
MS.gene005869.t1 MTR_8g017210 33.333 156 89 6 109 262 85 227 6.05e-20 90.1
MS.gene005869.t1 MTR_1g016010 34.161 161 91 6 91 249 47 194 7.39e-20 89.4
MS.gene005869.t1 MTR_2g093960 35.211 142 80 4 109 249 55 185 1.34e-19 88.6
MS.gene005869.t1 MTR_2g099990 35.172 145 79 6 107 249 67 198 4.85e-19 87.0
MS.gene005869.t1 MTR_2g099990 35.211 142 77 6 110 249 1 129 3.19e-18 84.3
MS.gene005869.t1 MTR_2g090745 33.553 152 88 5 107 257 28 167 8.52e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005869.t1 AT1G13290 65.447 246 61 5 23 258 12 243 5.41e-108 316
MS.gene005869.t1 AT3G57670 71.429 196 40 4 99 292 201 382 5.16e-98 293
MS.gene005869.t1 AT1G51220 75.152 165 38 1 100 264 163 324 5.67e-95 284
MS.gene005869.t1 AT3G20880 77.987 159 32 1 97 255 238 393 5.57e-94 284
MS.gene005869.t1 AT1G08290 73.810 168 38 3 99 265 164 326 4.08e-93 279
MS.gene005869.t1 AT1G34790 75.159 157 36 1 100 256 130 283 7.20e-88 265
MS.gene005869.t1 AT1G34370 41.176 153 84 5 107 255 27 177 3.06e-26 105
MS.gene005869.t1 AT1G34370 41.176 153 84 5 107 255 237 387 1.25e-25 106
MS.gene005869.t1 AT1G34370 41.176 153 84 5 107 255 237 387 1.25e-25 106
MS.gene005869.t1 AT5G22890 40.645 155 84 7 106 255 209 360 1.47e-24 102
MS.gene005869.t1 AT5G03150 35.211 142 80 4 109 249 76 206 5.23e-21 93.2
MS.gene005869.t1 AT1G55110 33.758 157 90 5 107 261 84 228 6.81e-21 92.4
MS.gene005869.t1 AT1G55110 33.758 157 90 5 107 261 84 228 6.81e-21 92.4
MS.gene005869.t1 AT1G55110 33.758 157 90 5 107 261 84 228 6.81e-21 92.4
MS.gene005869.t1 AT5G44160 32.178 202 106 8 63 257 20 197 2.22e-20 91.3
MS.gene005869.t1 AT2G02070 35.443 158 87 5 94 249 60 204 3.57e-20 90.9
MS.gene005869.t1 AT2G02070 35.443 158 87 5 94 249 60 204 3.57e-20 90.9
MS.gene005869.t1 AT2G02080 36.552 145 77 5 107 249 75 206 3.87e-20 90.5
MS.gene005869.t1 AT2G02080 36.552 145 77 5 107 249 75 206 3.87e-20 90.5
MS.gene005869.t1 AT2G02080 36.552 145 77 5 107 249 75 206 3.87e-20 90.5
MS.gene005869.t1 AT2G02080 36.552 145 77 5 107 249 75 206 3.87e-20 90.5
MS.gene005869.t1 AT3G45260 34.615 156 90 4 109 263 62 206 4.12e-20 90.1
MS.gene005869.t1 AT3G45260 34.615 156 90 4 109 263 62 206 4.12e-20 90.1
MS.gene005869.t1 AT5G60470 35.211 142 80 4 109 249 58 188 5.65e-20 89.7
MS.gene005869.t1 AT5G60470 35.211 142 80 4 109 249 63 193 6.86e-20 89.7
MS.gene005869.t1 AT5G60470 35.211 142 80 4 109 249 67 197 6.91e-20 89.7
MS.gene005869.t1 AT5G66730 34.000 150 84 5 107 254 53 189 1.05e-19 89.4
MS.gene005869.t1 AT1G14580 37.241 145 76 6 107 249 74 205 1.35e-19 89.0
MS.gene005869.t1 AT1G14580 37.241 145 76 6 107 249 74 205 1.35e-19 89.0
MS.gene005869.t1 AT1G14580 37.241 145 76 6 107 249 88 219 1.54e-19 88.6
MS.gene005869.t1 AT1G03840 31.638 177 107 6 83 257 35 199 2.77e-19 88.2
MS.gene005869.t1 AT2G02080 36.620 142 75 5 110 249 1 129 3.38e-19 87.4
MS.gene005869.t1 AT2G02080 36.620 142 75 5 110 249 1 129 3.38e-19 87.4
MS.gene005869.t1 AT3G50700 35.172 145 79 5 107 249 55 186 5.38e-19 87.0
MS.gene005869.t1 AT5G44160 34.667 150 85 5 109 257 21 158 1.05e-18 85.9
MS.gene005869.t1 AT1G03840 31.844 179 106 6 83 257 35 201 1.64e-18 85.9
MS.gene005869.t1 AT3G13810 32.051 156 94 4 107 261 91 235 2.35e-18 85.5
MS.gene005869.t1 AT3G13810 32.051 156 94 4 107 261 91 235 2.35e-18 85.5
MS.gene005869.t1 AT3G13810 32.051 156 94 4 107 261 86 230 2.39e-18 85.5
MS.gene005869.t1 AT3G13810 32.895 152 90 4 107 257 92 232 2.49e-18 85.1
MS.gene005869.t1 AT3G13810 32.051 156 94 4 107 261 72 216 2.60e-18 85.1
MS.gene005869.t1 AT3G13810 32.895 152 90 4 107 257 78 218 2.61e-18 85.1
MS.gene005869.t1 AT4G02670 34.028 144 83 4 107 249 74 206 4.12e-18 84.3
MS.gene005869.t1 AT4G02670 34.028 144 83 4 107 249 76 208 4.13e-18 84.3

Find 81 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCGAGTTTGGGAGGTATT+TGG 0.247423 1.1:-67547707 None:intergenic
CTCCCATTATTCCTCAATAT+TGG 0.256317 1.1:+67547880 MS.gene005869:CDS
AGTGAAAGTTGGATTAATTA+AGG 0.285981 1.1:-67547841 None:intergenic
GATCCAATATTGAGGAATAA+TGG 0.295991 1.1:-67547883 None:intergenic
AAAGGACCGGAGTCTCTAAA+AGG 0.306782 1.1:+67548278 MS.gene005869:CDS
GATGAAGATGATGCTGGTTT+TGG 0.319383 1.1:-67548302 None:intergenic
TGCAGACAGTGCAAGAAAAC+TGG 0.325433 1.1:-67547938 None:intergenic
TCTCCTGCTCAAATCCTTGT+TGG 0.331954 1.1:+67547909 MS.gene005869:CDS
TTCCTCTCTCTTGCTCCTCC+TGG 0.347551 1.1:+67547681 MS.gene005869:CDS
AAAGATCACGTTCGTGCGTT+TGG 0.349116 1.1:+67548578 MS.gene005869:CDS
AGAAGAATTGTGGGAAGCTT+TGG 0.351421 1.1:+67548513 MS.gene005869:CDS
AATGGGAGTGTGAGATGGTT+TGG 0.355414 1.1:-67547865 None:intergenic
AGGGATAGTAGTAGTAATAG+TGG 0.376112 1.1:-67547739 None:intergenic
AGAGAGGTAGTAGTAGAAAT+AGG 0.389319 1.1:-67547777 None:intergenic
ATCCAATATTGAGGAATAAT+GGG 0.396877 1.1:-67547882 None:intergenic
CACGTTCGTGCGTTTGGTAA+TGG 0.397696 1.1:+67548584 MS.gene005869:CDS
CTACATTTACAGCACAAGTA+TGG 0.418258 1.1:-67547809 None:intergenic
GATGGTTTGGAAGTGAAAGT+TGG 0.427167 1.1:-67547852 None:intergenic
TCTTTCAGTGGTCTTGCCCT+TGG 0.430630 1.1:-67548383 None:intergenic
TAGTAGTAATAGTGGGATGA+GGG 0.441652 1.1:-67547731 None:intergenic
CATTTGCTGTGAGAGGAGAT+TGG 0.445706 1.1:+67548480 MS.gene005869:CDS
TTGGGAGGTATTTGGTGGCC+AGG 0.460715 1.1:-67547699 None:intergenic
GGGGACATGGATCTCAATAT+AGG 0.462797 1.1:+67548255 MS.gene005869:CDS
GTAGTAGTAATAGTGGGATG+AGG 0.468089 1.1:-67547732 None:intergenic
GAAATAGGTATTTGATGCAA+GGG 0.489738 1.1:-67547762 None:intergenic
CATGTTGTTGAAACGGTTGA+AGG 0.493614 1.1:-67547967 None:intergenic
TACATGGAAGAAGAAGAAAC+TGG 0.497808 1.1:+67548665 MS.gene005869:CDS
AGGAGCAAGAGAGAGGAAGA+TGG 0.499455 1.1:-67547676 None:intergenic
GGGATAGTAGTAGTAATAGT+GGG 0.503268 1.1:-67547738 None:intergenic
CATTCGAGTGTAGGAAGTGT+AGG 0.505760 1.1:+67548453 MS.gene005869:CDS
CGAGTTTGGGAGGTATTTGG+TGG 0.508108 1.1:-67547704 None:intergenic
CCATGTTACTGTTGTGCTGA+GGG 0.513723 1.1:+67548338 MS.gene005869:CDS
AGAAATAGGTATTTGATGCA+AGG 0.514616 1.1:-67547763 None:intergenic
GGACACATGAGAAGAATTGT+GGG 0.524360 1.1:+67548504 MS.gene005869:CDS
ACAAGGATTTGAGCAGGAGA+AGG 0.531708 1.1:-67547906 None:intergenic
CAACCGTTTCAACAACATGC+AGG 0.536317 1.1:+67547971 MS.gene005869:CDS
ATTCCAACGTGTGGGGAGCA+TGG 0.539289 1.1:-67548607 None:intergenic
GAAACAACATAAACTATCCA+AGG 0.546681 1.1:+67548366 MS.gene005869:CDS
GAACCTGCATGTTGTTGAAA+CGG 0.548476 1.1:-67547974 None:intergenic
AACTCAAAGATTCCAACGTG+TGG 0.551951 1.1:-67548616 None:intergenic
AGGACACATGAGAAGAATTG+TGG 0.552345 1.1:+67548503 MS.gene005869:CDS
AGCATTGATGAAGATGATGC+TGG 0.557005 1.1:-67548308 None:intergenic
AAGGACCGGAGTCTCTAAAA+GGG 0.557565 1.1:+67548279 MS.gene005869:CDS
ATCTAAGCTGCTGCTGCAAG+AGG 0.562751 1.1:-67547643 None:intergenic
TTGTATGGTAGATGCATATG+TGG 0.564484 1.1:+67548234 MS.gene005869:intron
GGAGGTATTTGGTGGCCAGG+AGG 0.567766 1.1:-67547696 None:intergenic
GAGGGAAGTCATTCGAGTGT+AGG 0.568390 1.1:+67548444 MS.gene005869:CDS
ATAGGTATTTGATGCAAGGG+AGG 0.571468 1.1:-67547759 None:intergenic
GGACCAACAAGGATTTGAGC+AGG 0.574385 1.1:-67547912 None:intergenic
ACTCAAAGATTCCAACGTGT+GGG 0.574474 1.1:-67548615 None:intergenic
ACACACTACAAAAGAAAGCA+TGG 0.577637 1.1:+67548422 MS.gene005869:CDS
CAAGGATTTGAGCAGGAGAA+GGG 0.578543 1.1:-67547905 None:intergenic
TAAAGTAAATGAAAATTACA+TGG 0.583660 1.1:+67548649 MS.gene005869:CDS
AGTAGTAATAGTGGGATGAG+GGG 0.585249 1.1:-67547730 None:intergenic
GCAGACAGTGCAAGAAAACT+GGG 0.587578 1.1:-67547937 None:intergenic
TTGCTGTGAGAGGAGATTGG+AGG 0.592461 1.1:+67548483 MS.gene005869:CDS
GGCCAGGAGGAGCAAGAGAG+AGG 0.593784 1.1:-67547683 None:intergenic
GGAATAATGGGAGTGTGAGA+TGG 0.594723 1.1:-67547870 None:intergenic
ATCTCAATATAGGAAAGGAC+CGG 0.597133 1.1:+67548265 MS.gene005869:CDS
AGGGTTCTGAAATCTTTCAG+TGG 0.606548 1.1:-67548395 None:intergenic
GGAGAAGGGATCCAATATTG+AGG 0.614687 1.1:-67547891 None:intergenic
ACCATGTTACTGTTGTGCTG+AGG 0.615026 1.1:+67548337 MS.gene005869:CDS
CATGGATCTCAATATAGGAA+AGG 0.616598 1.1:+67548260 MS.gene005869:CDS
TGTATGGTAGATGCATATGT+GGG 0.620648 1.1:+67548235 MS.gene005869:intron
AGGAAGTCATTTGCTGTGAG+AGG 0.625916 1.1:+67548473 MS.gene005869:CDS
CCCTCAGCACAACAGTAACA+TGG 0.627644 1.1:-67548338 None:intergenic
CTCAAAGATTCCAACGTGTG+GGG 0.627798 1.1:-67548614 None:intergenic
GTAGTAATAGTGGGATGAGG+GGG 0.632310 1.1:-67547729 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.632523 1.1:+67548242 MS.gene005869:intron
TCTAAGCTGCTGCTGCAAGA+GGG 0.633302 1.1:-67547642 None:intergenic
AGTATGGTCATGGTGAAGAG+AGG 0.640967 1.1:-67547793 None:intergenic
TAGGTATTTGATGCAAGGGA+GGG 0.641902 1.1:-67547758 None:intergenic
ACTACAAAAGAAAGCATGGA+GGG 0.646182 1.1:+67548426 MS.gene005869:CDS
TGGCCATGCTCCCCACACGT+TGG 0.648703 1.1:+67548604 MS.gene005869:CDS
AAACAACATAAACTATCCAA+GGG 0.649476 1.1:+67548367 MS.gene005869:CDS
TTACAGCACAAGTATGGTCA+TGG 0.652632 1.1:-67547803 None:intergenic
ACAGTGCAAGAAAACTGGGT+AGG 0.667615 1.1:-67547933 None:intergenic
AAAACTGGGTAGGACCAACA+AGG 0.677453 1.1:-67547923 None:intergenic
GTACTGATGATGAGTTTGCA+TGG 0.690956 1.1:-67547598 None:intergenic
CACTACAAAAGAAAGCATGG+AGG 0.735997 1.1:+67548425 MS.gene005869:CDS
GTATGGTAGATGCATATGTG+GGG 0.763722 1.1:+67548236 MS.gene005869:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGATAAAAATATAATAA+TGG - chr1.1:67548002-67548021 None:intergenic 10.0%
!! AAACATGATTCATATATATA+TGG + chr1.1:67548189-67548208 MS.gene005869:intron 15.0%
!! CTAATGAATGATTAATTTAA+AGG - chr1.1:67548091-67548110 None:intergenic 15.0%
!! TAAAGTAAATGAAAATTACA+TGG + chr1.1:67548649-67548668 MS.gene005869:CDS 15.0%
!! TCATGATATAGTAAAAATAA+AGG - chr1.1:67548020-67548039 None:intergenic 15.0%
!! TATGATATTGTTGTATTGTA+TGG + chr1.1:67548219-67548238 MS.gene005869:intron 20.0%
! AAACAACATAAACTATCCAA+GGG + chr1.1:67548367-67548386 MS.gene005869:CDS 25.0%
! AGTGAAAGTTGGATTAATTA+AGG - chr1.1:67547844-67547863 None:intergenic 25.0%
! ATCCAATATTGAGGAATAAT+GGG - chr1.1:67547885-67547904 None:intergenic 25.0%
! GAATGATTAATTTAAAGGCA+AGG - chr1.1:67548086-67548105 None:intergenic 25.0%
AGAAATAGGTATTTGATGCA+AGG - chr1.1:67547766-67547785 None:intergenic 30.0%
AGCTCAATATGATTCATTCA+TGG - chr1.1:67548153-67548172 None:intergenic 30.0%
GAAACAACATAAACTATCCA+AGG + chr1.1:67548366-67548385 MS.gene005869:CDS 30.0%
GAAATAGGTATTTGATGCAA+GGG - chr1.1:67547765-67547784 None:intergenic 30.0%
GATCCAATATTGAGGAATAA+TGG - chr1.1:67547886-67547905 None:intergenic 30.0%
TCATTCATGGAAGAAAAGTA+AGG - chr1.1:67548140-67548159 None:intergenic 30.0%
! TCTTTTGTAGTGTGTTTGAA+GGG - chr1.1:67548417-67548436 None:intergenic 30.0%
! TTCTTTTGTAGTGTGTTTGA+AGG - chr1.1:67548418-67548437 None:intergenic 30.0%
!! TTGGAATCTTTGAGTTTTGA+TGG + chr1.1:67548623-67548642 MS.gene005869:CDS 30.0%
ACACACTACAAAAGAAAGCA+TGG + chr1.1:67548422-67548441 MS.gene005869:CDS 35.0%
AGAGAGGTAGTAGTAGAAAT+AGG - chr1.1:67547780-67547799 None:intergenic 35.0%
AGGGATAGTAGTAGTAATAG+TGG - chr1.1:67547742-67547761 None:intergenic 35.0%
ATCTCAATATAGGAAAGGAC+CGG + chr1.1:67548265-67548284 MS.gene005869:CDS 35.0%
CATGGATCTCAATATAGGAA+AGG + chr1.1:67548260-67548279 MS.gene005869:CDS 35.0%
CTACATTTACAGCACAAGTA+TGG - chr1.1:67547812-67547831 None:intergenic 35.0%
CTCCCATTATTCCTCAATAT+TGG + chr1.1:67547880-67547899 MS.gene005869:CDS 35.0%
GGGATAGTAGTAGTAATAGT+GGG - chr1.1:67547741-67547760 None:intergenic 35.0%
TACATGGAAGAAGAAGAAAC+TGG + chr1.1:67548665-67548684 MS.gene005869:CDS 35.0%
TGTATGGTAGATGCATATGT+GGG + chr1.1:67548235-67548254 MS.gene005869:intron 35.0%
TTGTATGGTAGATGCATATG+TGG + chr1.1:67548234-67548253 MS.gene005869:intron 35.0%
! ACTACAAAAGAAAGCATGGA+GGG + chr1.1:67548426-67548445 MS.gene005869:CDS 35.0%
! TAGTAGTAATAGTGGGATGA+GGG - chr1.1:67547734-67547753 None:intergenic 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr1.1:67548527-67548546 MS.gene005869:CDS 35.0%
AACTCAAAGATTCCAACGTG+TGG - chr1.1:67548619-67548638 None:intergenic 40.0%
ACTCAAAGATTCCAACGTGT+GGG - chr1.1:67548618-67548637 None:intergenic 40.0%
AGAAGAATTGTGGGAAGCTT+TGG + chr1.1:67548513-67548532 MS.gene005869:CDS 40.0%
AGGACACATGAGAAGAATTG+TGG + chr1.1:67548503-67548522 MS.gene005869:CDS 40.0%
ATAGGTATTTGATGCAAGGG+AGG - chr1.1:67547762-67547781 None:intergenic 40.0%
CATGTTGTTGAAACGGTTGA+AGG - chr1.1:67547970-67547989 None:intergenic 40.0%
GAACCTGCATGTTGTTGAAA+CGG - chr1.1:67547977-67547996 None:intergenic 40.0%
GGACACATGAGAAGAATTGT+GGG + chr1.1:67548504-67548523 MS.gene005869:CDS 40.0%
GTATGGTAGATGCATATGTG+GGG + chr1.1:67548236-67548255 MS.gene005869:intron 40.0%
TAGGTATTTGATGCAAGGGA+GGG - chr1.1:67547761-67547780 None:intergenic 40.0%
TTACAGCACAAGTATGGTCA+TGG - chr1.1:67547806-67547825 None:intergenic 40.0%
! AGTAGTAATAGTGGGATGAG+GGG - chr1.1:67547733-67547752 None:intergenic 40.0%
! CACTACAAAAGAAAGCATGG+AGG + chr1.1:67548425-67548444 MS.gene005869:CDS 40.0%
! GATGGTTTGGAAGTGAAAGT+TGG - chr1.1:67547855-67547874 None:intergenic 40.0%
! GTAGTAGTAATAGTGGGATG+AGG - chr1.1:67547735-67547754 None:intergenic 40.0%
!! AGCATTGATGAAGATGATGC+TGG - chr1.1:67548311-67548330 None:intergenic 40.0%
!! AGGGTTCTGAAATCTTTCAG+TGG - chr1.1:67548398-67548417 None:intergenic 40.0%
!!! GATGAAGATGATGCTGGTTT+TGG - chr1.1:67548305-67548324 None:intergenic 40.0%
AAAACTGGGTAGGACCAACA+AGG - chr1.1:67547926-67547945 None:intergenic 45.0%
AAAGATCACGTTCGTGCGTT+TGG + chr1.1:67548578-67548597 MS.gene005869:CDS 45.0%
AAAGGACCGGAGTCTCTAAA+AGG + chr1.1:67548278-67548297 MS.gene005869:CDS 45.0%
ACAAGGATTTGAGCAGGAGA+AGG - chr1.1:67547909-67547928 None:intergenic 45.0%
ACAGTGCAAGAAAACTGGGT+AGG - chr1.1:67547936-67547955 None:intergenic 45.0%
ACCATGTTACTGTTGTGCTG+AGG + chr1.1:67548337-67548356 MS.gene005869:CDS 45.0%
AGTATGGTCATGGTGAAGAG+AGG - chr1.1:67547796-67547815 None:intergenic 45.0%
CAACCGTTTCAACAACATGC+AGG + chr1.1:67547971-67547990 MS.gene005869:CDS 45.0%
CAAGGATTTGAGCAGGAGAA+GGG - chr1.1:67547908-67547927 None:intergenic 45.0%
CCATGTTACTGTTGTGCTGA+GGG + chr1.1:67548338-67548357 MS.gene005869:CDS 45.0%
CTCAAAGATTCCAACGTGTG+GGG - chr1.1:67548617-67548636 None:intergenic 45.0%
GCAGACAGTGCAAGAAAACT+GGG - chr1.1:67547940-67547959 None:intergenic 45.0%
GGAGAAGGGATCCAATATTG+AGG - chr1.1:67547894-67547913 None:intergenic 45.0%
GGGGACATGGATCTCAATAT+AGG + chr1.1:67548255-67548274 MS.gene005869:CDS 45.0%
TAGATGCATATGTGGGGACA+TGG + chr1.1:67548242-67548261 MS.gene005869:intron 45.0%
TCTCCTGCTCAAATCCTTGT+TGG + chr1.1:67547909-67547928 MS.gene005869:CDS 45.0%
TGCAGACAGTGCAAGAAAAC+TGG - chr1.1:67547941-67547960 None:intergenic 45.0%
! AAGGACCGGAGTCTCTAAAA+GGG + chr1.1:67548279-67548298 MS.gene005869:CDS 45.0%
! AATGGGAGTGTGAGATGGTT+TGG - chr1.1:67547868-67547887 None:intergenic 45.0%
! CATTCGAGTGTAGGAAGTGT+AGG + chr1.1:67548453-67548472 MS.gene005869:CDS 45.0%
! GGAATAATGGGAGTGTGAGA+TGG - chr1.1:67547873-67547892 None:intergenic 45.0%
! GTAGTAATAGTGGGATGAGG+GGG - chr1.1:67547732-67547751 None:intergenic 45.0%
!! AGGAAGTCATTTGCTGTGAG+AGG + chr1.1:67548473-67548492 MS.gene005869:CDS 45.0%
!! CATTTGCTGTGAGAGGAGAT+TGG + chr1.1:67548480-67548499 MS.gene005869:CDS 45.0%
!! TTTGGCCCTTTTAGAGACTC+CGG - chr1.1:67548287-67548306 None:intergenic 45.0%
AGGAGCAAGAGAGAGGAAGA+TGG - chr1.1:67547679-67547698 None:intergenic 50.0%
ATCTAAGCTGCTGCTGCAAG+AGG - chr1.1:67547646-67547665 None:intergenic 50.0%
CACGTTCGTGCGTTTGGTAA+TGG + chr1.1:67548584-67548603 MS.gene005869:CDS 50.0%
CCCTCAGCACAACAGTAACA+TGG - chr1.1:67548341-67548360 None:intergenic 50.0%
GAGGGAAGTCATTCGAGTGT+AGG + chr1.1:67548444-67548463 MS.gene005869:CDS 50.0%
GGACCAACAAGGATTTGAGC+AGG - chr1.1:67547915-67547934 None:intergenic 50.0%
TCTAAGCTGCTGCTGCAAGA+GGG - chr1.1:67547645-67547664 None:intergenic 50.0%
TTGCTGTGAGAGGAGATTGG+AGG + chr1.1:67548483-67548502 MS.gene005869:CDS 50.0%
! TCTTTCAGTGGTCTTGCCCT+TGG - chr1.1:67548386-67548405 None:intergenic 50.0%
!! CGAGTTTGGGAGGTATTTGG+TGG - chr1.1:67547707-67547726 None:intergenic 50.0%
!! GTGCGAGTTTGGGAGGTATT+TGG - chr1.1:67547710-67547729 None:intergenic 50.0%
ATTCCAACGTGTGGGGAGCA+TGG - chr1.1:67548610-67548629 None:intergenic 55.0%
TTCCTCTCTCTTGCTCCTCC+TGG + chr1.1:67547681-67547700 MS.gene005869:CDS 55.0%
!! TTGGGAGGTATTTGGTGGCC+AGG - chr1.1:67547702-67547721 None:intergenic 55.0%
! GGATGAGGGGGTGCGAGTTT+GGG - chr1.1:67547720-67547739 None:intergenic 60.0%
!! GGAGGTATTTGGTGGCCAGG+AGG - chr1.1:67547699-67547718 None:intergenic 60.0%
GGCCAGGAGGAGCAAGAGAG+AGG - chr1.1:67547686-67547705 None:intergenic 65.0%
TGGCCATGCTCCCCACACGT+TGG + chr1.1:67548604-67548623 MS.gene005869:CDS 65.0%
! GGGATGAGGGGGTGCGAGTT+TGG - chr1.1:67547721-67547740 None:intergenic 65.0%
! TGAGGGGGTGCGAGTTTGGG+AGG - chr1.1:67547717-67547736 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 67547600 67548736 67547600 ID=MS.gene005869
chr1.1 mRNA 67547600 67548736 67547600 ID=MS.gene005869.t1;Parent=MS.gene005869
chr1.1 exon 67547600 67547992 67547600 ID=MS.gene005869.t1.exon1;Parent=MS.gene005869.t1
chr1.1 CDS 67547600 67547992 67547600 ID=cds.MS.gene005869.t1;Parent=MS.gene005869.t1
chr1.1 exon 67548245 67548736 67548245 ID=MS.gene005869.t1.exon2;Parent=MS.gene005869.t1
chr1.1 CDS 67548245 67548736 67548245 ID=cds.MS.gene005869.t1;Parent=MS.gene005869.t1
Gene Sequence

>MS.gene005869

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTCCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGGTTCATCCATTATTATATTTTTATCCTTTATTTTTACTATATCATGACTAAATATCTGATACAACATTTTTCTCTCATATGAAACATAAACCTTGCCTTTAAATTAATCATTCATTAGCACTAATATAGTGTCATTTTTGTGCACCTTACTTTTCTTCCATGAATGAATCATATTGAGCTTACTATATTAATATCAAAACATGATTCATATATATATGGTACTAGTTATGATATTGTTGTATTGTATGGTAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGTTACTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAAAGAAAGCATGGAGGGAAGTCATTCGAGTGTAGGAAGTGTAGGAAGTCATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCCCACACGTTGGAATCTTTGAGTTTTGATGGACATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAACTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAA
Protein sequence

>MS.gene005869.t1

MQTHHQYYSFSCESPSCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDGHKVNENYMEEEETGSEDEDNNSEVVFSLN