AlfalfaGEDB | MS.gene005890

M. sativa cultivar XinJiangDaYe / MS.gene005890

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005890.t1	KEH43530.1	93.7	907	37	2	4	890	296	1202	0.00E+00	1646.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005890.t1	Q4KKX4	40.0	120	69	2	14	133	373	489	3.0e-16	89.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005890.t1	A0A072VZP3	93.7	907	37	2	4	890	296	1202	0.0e+00	1646.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene005890.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005890.t1	MTR_1g095570	93.716	907	37	2	4	890	296	1202	0.0	1748
MS.gene005890.t1	MTR_1g095570	93.716	907	37	2	4	890	728	1634	0.0	1739
MS.gene005890.t1	MTR_6g033350	48.739	595	232	10	3	534	8	592	1.42e-147	455
MS.gene005890.t1	MTR_6g033350	39.766	171	66	7	609	758	595	749	2.86e-19	93.6
MS.gene005890.t1	MTR_6g033345	47.685	216	109	3	149	361	27	241	8.17e-43	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005890.t1	AT3G52250	39.492	433	197	13	9	380	801	1229	1.16e-72	262
MS.gene005890.t1	AT3G52250	37.063	143	72	6	620	761	1479	1604	1.67e-12	72.4
MS.gene005890.t1	AT3G52250	39.492	433	197	13	9	380	801	1229	1.16e-72	262
MS.gene005890.t1	AT3G52250	37.063	143	72	6	620	761	1479	1604	1.67e-12	72.4

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Find 205 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAACTTGATGGCATC+AGG	0.454263	1.1:+67849547	MS.gene005890:CDS
AAACTGAAGAGGAAAGATGT+TGG	0.549660	1.1:+67849499	MS.gene005890:CDS
AAAGAAGAATCGGGCAAGGA+TGG	0.476975	1.1:-67851481	None:intergenic
AAAGGGGTATGATCAATCCT+TGG	0.529771	1.1:+67849332	MS.gene005890:CDS
AAATGTTTCATTCTCACCAG+TGG	0.607430	1.1:+67850757	MS.gene005890:CDS
AAATTAATAATCTCTGTTGT+TGG	0.431752	1.1:-67849160	None:intergenic
AACATTAATTGCACAAACAA+CGG	0.536070	1.1:-67850411	None:intergenic
AACCCTATACCTGGAATTAA+CGG	0.387901	1.1:+67850140	MS.gene005890:CDS
AACGGGGATCCGTTAATTCC+AGG	0.391422	1.1:-67850149	None:intergenic
AACGTTTCTTCAGCAAGACT+CGG	0.568747	1.1:+67850093	MS.gene005890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAATCAAGAGAAATCAG+TGG	+	chr1.1:67850353-67850372	MS.gene005890:CDS	30.0%
AGAAACGTTTACAATGTTCT+TGG	-	chr1.1:67850082-67850101	None:intergenic	30.0%
AGCTAACAAGAAAGAAGAAT+CGG	-	chr1.1:67851494-67851513	None:intergenic	30.0%
AGTGATGAGTTATGGTTATT+GGG	+	chr1.1:67851423-67851442	MS.gene005890:CDS	30.0%
ATCTTTGTCAACAACACATT+GGG	-	chr1.1:67850666-67850685	None:intergenic	30.0%
ATGAATCAAGAGAAATCAGT+GGG	+	chr1.1:67850354-67850373	MS.gene005890:CDS	30.0%
ATGGTCATTTCAAACCATTA+TGG	+	chr1.1:67851170-67851189	MS.gene005890:CDS	30.0%
ATGTCATTGCAGGTAATAAA+AGG	+	chr1.1:67849638-67849657	MS.gene005890:intron	30.0%
ATGTCTTGAAAATGTAGATG+TGG	+	chr1.1:67850385-67850404	MS.gene005890:CDS	30.0%
ATTGCAGGTAATAAAAGGAT+GGG	+	chr1.1:67849643-67849662	MS.gene005890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	67849127	67851933	67849127	ID=MS.gene005890
chr1.1	mRNA	67849127	67851933	67849127	ID=MS.gene005890.t1;Parent=MS.gene005890
chr1.1	exon	67849127	67849568	67849127	ID=MS.gene005890.t1.exon1;Parent=MS.gene005890.t1
chr1.1	CDS	67849127	67849568	67849127	ID=cds.MS.gene005890.t1;Parent=MS.gene005890.t1
chr1.1	exon	67849700	67851933	67849700	ID=MS.gene005890.t1.exon2;Parent=MS.gene005890.t1
chr1.1	CDS	67849700	67851933	67849700	ID=cds.MS.gene005890.t1;Parent=MS.gene005890.t1

Gene Sequence

>MS.gene005890

ATGAATGCAGCTGGAAACCATCTAAGCTTGGTTCCAACAACAGAGATTATTAATTTCACAAGCAAACTTCTGTCAGAATCTCAAGCACAACTTCAGAGAAACACCTTGAAGATGCCTGCATTAATATTGGACGAGAAGGAGAAGATGGTTACAAAGTTCATATCTAGTAATGGGCTGGTTGAAGATCCGTTGGCTATTGAGAAAGAAAGGGGTATGATCAATCCTTGGACATCAGAAGAGAAAGAATTATTCTTGAAGAAATTTGCTGCATTTGGAAAAGATTTCCGGAAAATTGCTTCTTTCCTTGATCACAAGACAACTGCAGACTGTGTTGAGTTCTACTACAAGAACCACAAATCCGAATGTTTTGAGAAACTGAAGAGGAAAGATGTTGGTAAGCTAGGGAAGTCATATGCAGCTAAAACTAACTTGATGGCATCAGGTAAAAAATGGAATCATGAAGTTAATGTTTCTTCACTTGATATTTTGAGTGCTGCTTCAGTGATGGCAGATGTCATTGCAGGTAATAAAAGGATGGGAGGAAGATTCTTCTGGGATATGGTAATGTAAAAGCATCAAGGGGCGAGGACAGCATTATAGAGAGATCAAACAGTTTTGACACTCTAGGGGATGAAAGGGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCATTTTCATCTGAGGCTATGAGTTCCTGCATAACAAGTTCAATTGATCCTGTAGATGGTAACAAGGAAACGAAGTTCTTGAAAGCAAACCCTATATTCAAACAACCCTTGACACCTGATATTTCACAGAATGCTGATGATGAGACTTGTTCAGATGAGAGCTGCGGCAAAGCTACTGAGTGGACAGATGATGAGACAGCAGCTTTTCTTCAGGCTGTATCATCTTTTGGCAAGGATTTTGCGAAGATATCACGGTGTGTAGGTACAAAGACCCAAGAACATTGTAAACGTTTCTTCAGCAAGACTCGGAAATGTCTTGGATTGAATCTTGAAAACCCTATACCTGGAATTAACGGATCCCCGTTGAATGATGATGCAAATGGCGGTGAGAGTGATACAGATGATGCATGTGTTGTTGAGGCAGGCTCAGTGGTTGATGCTGATAAGTCTGGAAATAAAACAGACGAGGACCTGCCTTCTGATGCCTTGAATACATTCCATGATGAATCCAATCCTCTGGAAGCTACGAGCCTGTCTGCTAAATTAAATGAATCAAGAGAAATCAGTGGGACCGAAGTATGTCTTGAAAATGTAGATGTGGCTTCCGTTGTTTGTGCAATTAATGTTGAATCTAAGCTAGGCTCTGATGTTAGTGGAGTTGGCTTGTGCACAACAGACAAGTCTGGTTCAGTCAATGGAGTTGGCTTGGGAGGTACAGTTAGAGAATCTATTTCTGCTTCAGAAATAATTAAACCAAGGGAGTGTGGTTCTGTTGCTTTGGATAGAACGGTTTCCGAGGGTTCTTCTGGGGGTCTTTGTCTTGGAAATGAAGTGGAAAGGCAAAGAGTGTCAGCACCCCAATGTGTTGTTGACAAAGATGTTAAACATATAGCAGATGCAGGTGTTGTAGTTGAGTTGAAAAGCTGTGTCTTAGAATCGAGCACTGCAGCAAATGTTTCATTCTCACCAGTGGTCAATTCATGTTCAGGATTGAGTTTTGGTTCTGAAAATAAGCATGTCTCCTTTGGAAAGCCTCATACGTCAGCACTGTCTATGAGTGATCTTCAGGCAACTGCAAATTCATTGTTGCTTAAAGCTGCCGCTGCTCAATGTGAGAAAACAGTTAGCCAGGATCGACTGTCCTCTACTTGTGATATTCAGGGAGGTAGAGATATGCGGTGTCATAGCTCTGGTAGTAATGGTGACCATCAGCTTCCTCTTTCGGGGAGCCATGTTGAGACTGTTAGTGTTCTCCAGGGCTATTCCATACAGGTGCCCATAAAAAAAGAAGTGGATGGGGATGTGAATTGCAGCAGTTCAGCAGCTGAGTTTCCTCTTCTACCCCAAAAGGTCAAACAGACTGATGGTCATTTCAAACCATTATGGCATTTTTTGGATTCAGAAAAAACATCCAGAAATGGTGACGTGAAACTGTTTGGAAAGATATTAACCAATCCATCTTCCACTCAGAATCCTATTTTGACTGCGAAGCGAAGTGAAGAAAATAGTTCCCATCATCCCAAGTTGAACAACAAGTCTTCTAATCTGAATTTTACCGGCCATCAAAATTCTGATGAAAATTTAAATTTTTTGGAGTTTGGCCTTGAAAATGTTCCAGTGATGAGTTATGGTTATTGGGAAGGGAATGCAATACAAAGTAGACAGTCTGGTCTCCCATCCTTGCCCGATTCTTCTTTCTTGTTAGCTAAATACCCTGCTGCGTTTAGTAATTATCCTACATCATCTTCCAATTTGGAGCAACAACCACCATTGCAGGCCTTTGCCAAGAATAGTGAACGGCATTTGACTGGTGCATCTACTTTTACAGCTAGAGACATGAATGGCAGCAATGCGATGCTTGATTATCAGATGTTTAGAGGTAGAGATGGTCCACAAATTCAGCCATTTATGGTTGATGTCCAACACCGACAAGATGTATTCTCTGAGATGCAGAGAAGAAACAGTTTTGAAGCAATCTCCAACTTGCAGCAGCAAGGAAGGGGAATGATGGGAATGAATAGTGTTGGAAGGCCTGGGATTCTAGTGGGAGGATCGTGCAGCGGTGTCTCGGATCCTGTGGCGGCAATTAAAATGCATTATTCCACCAATTCTGACTTAGGCAGGTAG

Protein sequence

>MS.gene005890.t1

MNAAGNHLSLVPTTEIINFTSKLLSESQAQLQRNTLKMPALILDEKEKMVTKFISSNGLVEDPLAIEKERGMINPWTSEEKELFLKKFAAFGKDFRKIASFLDHKTTADCVEFYYKNHKSECFEKLKRKDVGKLGKSYAAKTNLMASASRGEDSIIERSNSFDTLGDERETAAAADVLAGICGSFSSEAMSSCITSSIDPVDGNKETKFLKANPIFKQPLTPDISQNADDETCSDESCGKATEWTDDETAAFLQAVSSFGKDFAKISRCVGTKTQEHCKRFFSKTRKCLGLNLENPIPGINGSPLNDDANGGESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPLEATSLSAKLNESREISGTEVCLENVDVASVVCAINVESKLGSDVSGVGLCTTDKSGSVNGVGLGGTVRESISASEIIKPRECGSVALDRTVSEGSSGGLCLGNEVERQRVSAPQCVVDKDVKHIADAGVVVELKSCVLESSTAANVSFSPVVNSCSGLSFGSENKHVSFGKPHTSALSMSDLQATANSLLLKAAAAQCEKTVSQDRLSSTCDIQGGRDMRCHSSGSNGDHQLPLSGSHVETVSVLQGYSIQVPIKKEVDGDVNCSSSAAEFPLLPQKVKQTDGHFKPLWHFLDSEKTSRNGDVKLFGKILTNPSSTQNPILTAKRSEENSSHHPKLNNKSSNLNFTGHQNSDENLNFLEFGLENVPVMSYGYWEGNAIQSRQSGLPSLPDSSFLLAKYPAAFSNYPTSSSNLEQQPPLQAFAKNSERHLTGASTFTARDMNGSNAMLDYQMFRGRDGPQIQPFMVDVQHRQDVFSEMQRRNSFEAISNLQQQGRGMMGMNSVGRPGILVGGSCSGVSDPVAAIKMHYSTNSDLGR