AlfalfaGEDB | MS.gene005904

M. sativa cultivar XinJiangDaYe / MS.gene005904

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005904.t1	XP_003591872.1	97.7	346	8	0	73	418	96	441	1.20E-192	682.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005904.t1	F4IB81	32.8	338	194	11	83	408	324	640	9.3e-37	156.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005904.t1	G7I510	97.7	346	8	0	73	418	96	441	8.5e-193	682.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005904.t1	MTR_1g094730	97.852	419	8	1	1	418	23	441	0.0	844
MS.gene005904.t1	MTR_2g095180	55.041	367	151	5	63	418	74	437	2.49e-139	405
MS.gene005904.t1	MTR_5g085790	32.399	321	191	7	87	402	343	642	1.22e-44	164
MS.gene005904.t1	MTR_8g014500	30.088	339	202	10	83	408	340	656	3.91e-43	160
MS.gene005904.t1	MTR_5g086030	29.348	368	223	12	42	402	284	621	5.52e-40	151
MS.gene005904.t1	MTR_5g033490	29.483	329	207	6	83	406	292	600	3.59e-39	149
MS.gene005904.t1	MTR_3g080170	31.511	311	186	10	87	394	345	631	2.25e-37	144
MS.gene005904.t1	MTR_3g080050	30.312	320	193	10	88	402	310	604	2.52e-37	143
MS.gene005904.t1	MTR_3g007600	31.392	309	176	10	89	387	24	306	3.46e-36	136
MS.gene005904.t1	MTR_5g086540	33.127	323	175	13	88	394	262	559	1.07e-35	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005904.t1	AT3G57120	55.556	369	142	4	72	418	88	456	7.35e-140	407
MS.gene005904.t1	AT1G51940	29.679	374	223	11	50	408	292	640	2.41e-43	160
MS.gene005904.t1	AT2G33580	30.618	356	197	13	57	402	336	651	1.33e-39	150
MS.gene005904.t1	AT3G21630	30.239	377	213	13	35	402	266	601	2.83e-35	137
MS.gene005904.t1	AT4G11900	31.013	316	186	10	83	392	451	740	6.72e-34	134
MS.gene005904.t1	AT4G11900	31.013	316	186	10	83	392	520	809	8.69e-34	134
MS.gene005904.t1	AT1G61420	30.564	337	196	14	58	383	298	607	4.67e-33	131
MS.gene005904.t1	AT1G61420	31.212	330	189	14	65	383	307	609	4.98e-33	131
MS.gene005904.t1	AT4G04540	31.707	369	187	15	33	387	269	586	7.17e-33	131
MS.gene005904.t1	AT1G61420	31.212	330	189	14	65	383	457	759	7.94e-33	131

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Find 139 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGACGTGTATGCGTT+CGG	0.538966	1.1:+68051387	MS.gene005904:CDS
AAAGAGTGGGACGAGAAATT+GGG	0.398189	1.1:+68051696	MS.gene005904:CDS
AAATCGCACTCCCTTGCTAC+CGG	0.539138	1.1:-68051307	None:intergenic
AAATGACGGCGGGTATAAGA+GGG	0.586540	1.1:+68051467	MS.gene005904:CDS
AACAAGATAAATGTAGCTCC+CGG	0.545443	1.1:-68050977	None:intergenic
AAGAGAACAGCGGAAGGAGT+TGG	0.482206	1.1:-68050821	None:intergenic
AAGAGTGGGACGAGAAATTG+GGG	0.597710	1.1:+68051697	MS.gene005904:CDS
AAGCTCCGAGGAGTTTCACA+AGG	0.692032	1.1:-68050948	None:intergenic
AATAAAAGCTAGGGTCACCG+TGG	0.635887	1.1:-68051750	None:intergenic
AATTGGAGGGAAATGACGGC+GGG	0.575410	1.1:+68051457	MS.gene005904:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTCAAAGCAAAAACAA+TGG	+	chr1.1:68050653-68050672	MS.gene005904:CDS	30.0%
ATGTTGCTGAGAAAATGATT+CGG	+	chr1.1:68051583-68051602	MS.gene005904:CDS	30.0%
AACAAGATAAATGTAGCTCC+CGG	-	chr1.1:68050980-68050999	None:intergenic	35.0%
ATCTTAATACATGGACTTCG+AGG	+	chr1.1:68051067-68051086	MS.gene005904:CDS	35.0%
CGAAGTCCATGTATTAAGAT+CGG	-	chr1.1:68051067-68051086	None:intergenic	35.0%
GATTACGAAGACAATCAGAA+AGG	-	chr1.1:68051026-68051045	None:intergenic	35.0%
TGTTGCTGAGAAAATGATTC+GGG	+	chr1.1:68051584-68051603	MS.gene005904:CDS	35.0%
TTTCGACTCCAAATACAACT+TGG	-	chr1.1:68051679-68051698	None:intergenic	35.0%
TTTGAATTGGAGGGAAATGA+CGG	+	chr1.1:68051453-68051472	MS.gene005904:CDS	35.0%
AAAGAGTGGGACGAGAAATT+GGG	+	chr1.1:68051696-68051715	MS.gene005904:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	68050502	68051758	68050502	ID=MS.gene005904
chr1.1	mRNA	68050502	68051758	68050502	ID=MS.gene005904.t1;Parent=MS.gene005904
chr1.1	exon	68050502	68051758	68050502	ID=MS.gene005904.t1.exon1;Parent=MS.gene005904.t1
chr1.1	CDS	68050502	68051758	68050502	ID=cds.MS.gene005904.t1;Parent=MS.gene005904.t1

Gene Sequence

>MS.gene005904

ATGTGCAAATCGAAAAAAAGCACCACCGTGGTGCAACCCACAACCAGAAACAACCCTCACCCACAACGAACTTCAACATCCTCATCCTCAAATCTCCCATCATCTTCAACCAGCGAAGTTCCAATAACAGAATCAAGAAGTTACATATACAACAACTCAAAGCAAAAACAATGGTCCAAAACATCTTCATCATCTTCTTCCATTTCAACCCACTCTTCTCTCTCAAGCCTCAAACATACTCTCCCTGAAAACCCTCACATCTACCCTTTCTCCGATATCTCAACCGCCACCAATAACTTCTCCGCCAATCGTCTCTCCTCCAACTCCTTCCGCTGTTCTCTTCACAACCGCGACGTCGTTGTTTTTCAACGGAAATTCCGCCGTCAAATTGACCTCCCTGAGCTTCGTGATCGACTTGCTCTTATCTGCCGGAGCCACCATAGCAGCCTTGTGAAACTCCTCGGAGCTTCTGTCTCCGGGAGCTACATTTATCTTGTTTATGAATTTGTTCCCGGTGCTAACCTTTCTGATTGTCTTCGTAATCGTCGTAATCCTAGCTTCACCGATCTTAATACATGGACTTCGAGGATGTTAATTGCTTCCGATCTAGCTCACGGTCTTGATTACGTTCATAATTTTGCTGGTTCTGGTTCTGGTTTTGTTCATAATCATATTAAAAGCTCTAGCATCATCGTTGCAGAGGAGAATTTCGGTGTGAAGATTTGTCACTTCGGTACGTCGGAGCTTTGCGGCGAGTCTGTCGGTGATACTGCTGGATCGGACTCCGGGAGGAAGTTGAAGAAGTCCGGTAGCAAGGGAGTGCGATTTGAGGGAACGAGGGGGTATATGGCGCCGGAATTTCTTGTTACCGGCGTGGCGACGCAGAAAACCGACGTGTATGCGTTCGGTGTGGTGGTTTTGGAGATTCTGAGCGGGGAAGAAGCGGTGAGATTTGAATTGGAGGGAAATGACGGCGGGTATAAGAGGGTGAGTGTGGTGGAGACGGCGAGGGAAGCGTGGAAGGAGCACGGTGGTGTGAGAAAATGGGTTGATCGGAGGTTGAAGGATTCGTTTCCGATGGATGTTGCTGAGAAAATGATTCGGGTCGGGTTAGAGTGTGTTGGGGATGATCCGAATGAGAGACCGGATATGGGTCGGGTTTCGATGGAAGTGTCCAAGTTGTATTTGGAGTCGAAAGAGTGGGACGAGAAATTGGGGACTAACATTGATTTTTCGGTTTCATTGGCCCCACGGTGA

Protein sequence

>MS.gene005904.t1

MCKSKKSTTVVQPTTRNNPHPQRTSTSSSSNLPSSSTSEVPITESRSYIYNNSKQKQWSKTSSSSSSISTHSSLSSLKHTLPENPHIYPFSDISTATNNFSANRLSSNSFRCSLHNRDVVVFQRKFRRQIDLPELRDRLALICRSHHSSLVKLLGASVSGSYIYLVYEFVPGANLSDCLRNRRNPSFTDLNTWTSRMLIASDLAHGLDYVHNFAGSGSGFVHNHIKSSSIIVAEENFGVKICHFGTSELCGESVGDTAGSDSGRKLKKSGSKGVRFEGTRGYMAPEFLVTGVATQKTDVYAFGVVVLEILSGEEAVRFELEGNDGGYKRVSVVETAREAWKEHGGVRKWVDRRLKDSFPMDVAEKMIRVGLECVGDDPNERPDMGRVSMEVSKLYLESKEWDEKLGTNIDFSVSLAPR