AlfalfaGEDB | MS.gene005965

M. sativa cultivar XinJiangDaYe / MS.gene005965

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005965.t1	RHN81490.1	69.1	619	10	1	1	438	76	694	4.20E-233	817

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005965.t1	Q93YR9	66.1	386	116	5	1	378	1	379	3.7e-145	516.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005965.t1	G7I382	69.1	619	10	1	1	438	1	619	3.0e-233	817.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene005965.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005965.t1	MTR_1g094960	98.413	378	6	0	1	378	1	378	0.0	793
MS.gene005965.t1	MTR_1g094960	94.915	59	3	0	380	438	561	619	8.15e-26	110
MS.gene005965.t1	MTR_2g094570	68.984	374	107	4	10	378	2	371	0.0	522
MS.gene005965.t1	MTR_2g094570	68.984	374	107	4	10	378	2	371	0.0	521
MS.gene005965.t1	MTR_2g094570	68.984	374	107	4	10	378	58	427	1.66e-180	522
MS.gene005965.t1	MTR_4g058930	69.291	381	104	8	8	378	1	378	6.70e-177	510
MS.gene005965.t1	MTR_4g058930	69.291	381	104	8	8	378	1	378	1.75e-176	510
MS.gene005965.t1	MTR_1g064430	64.829	381	113	6	13	378	21	395	9.51e-169	490
MS.gene005965.t1	MTR_1g064430	64.829	381	113	6	13	378	34	408	1.64e-168	490
MS.gene005965.t1	MTR_7g101280	58.701	385	139	8	10	378	22	402	1.18e-150	442

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005965.t1	AT4G30080	67.358	386	111	6	1	378	1	379	0.0	530
MS.gene005965.t1	AT2G28350	67.183	387	93	7	13	378	4	377	2.36e-175	506
MS.gene005965.t1	AT2G28350	67.183	387	93	7	13	378	4	377	4.12e-175	506
MS.gene005965.t1	AT1G77850	44.986	369	186	5	16	378	16	373	2.29e-106	327
MS.gene005965.t1	AT1G77850	44.986	369	186	5	16	378	16	373	2.70e-106	327
MS.gene005965.t1	AT5G37020	40.220	363	170	8	13	366	16	340	3.85e-79	261
MS.gene005965.t1	AT5G37020	40.220	363	170	8	13	366	16	340	7.71e-79	260
MS.gene005965.t1	AT1G19220	40.379	369	175	9	5	366	9	339	2.19e-77	260
MS.gene005965.t1	AT1G30330	40.217	368	172	9	9	366	14	343	3.79e-76	255
MS.gene005965.t1	AT1G30330	40.217	368	172	9	9	366	14	343	3.79e-76	255

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Find 84 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTTCTACTTTCCACA+AGG	0.669890	1.3:+66120861	MS.gene005965:CDS
AAATGGTGGCAATGATTTGA+TGG	0.436140	1.3:+66121532	MS.gene005965:CDS
AAATGTTACTGCATTGTGTA+TGG	0.470847	1.3:+66123232	MS.gene005965:CDS
AACCGTGTATCACCTTTGTT+TGG	0.470136	1.3:+66121467	MS.gene005965:CDS
AAGAAAGGTGGAATTGGTGG+TGG	0.559157	1.3:+66121410	MS.gene005965:CDS
AAGAGTGGTTCTGTTTCTGA+AGG	0.520431	1.3:+66123095	MS.gene005965:CDS
AAGGGATGAGAGGTGGAACA+CGG	0.623921	1.3:-66120926	None:intergenic
AAGTTTAGACATATCTATAG+AGG	0.484340	1.3:+66121257	MS.gene005965:CDS
AATCACAAGAAGCTTGTTGC+TGG	0.491007	1.3:+66121326	MS.gene005965:CDS
AATCTCTGCTATGAAATACA+TGG	0.608031	1.3:+66120953	MS.gene005965:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTTACTGCATTGTGTA+TGG	+	chr1.3:66123232-66123251	MS.gene005965:CDS	30.0%
AATCTCTGCTATGAAATACA+TGG	+	chr1.3:66120953-66120972	MS.gene005965:CDS	30.0%
AATCTGCAATGCAAATTCAA+TGG	+	chr1.3:66121678-66121697	MS.gene005965:CDS	30.0%
AATGAGAACAGAAAAAATGG+TGG	+	chr1.3:66121518-66121537	MS.gene005965:CDS	30.0%
AATGATTTGATGGGAAAAGT+GGG	+	chr1.3:66121542-66121561	MS.gene005965:CDS	30.0%
AATTCAGTGCATCAATAAGA+TGG	+	chr1.3:66122008-66122027	MS.gene005965:intron	30.0%
AGACTAATTCAACTAACCAA+GGG	-	chr1.3:66122524-66122543	None:intergenic	30.0%
AGATTAATGTTGGAGATTGA+TGG	-	chr1.3:66122663-66122682	None:intergenic	30.0%
ATAAACCTTGGTTTCTTTCT+TGG	-	chr1.3:66122585-66122604	None:intergenic	30.0%
ATTATTGCTAAGGATATGCA+TGG	+	chr1.3:66121224-66121243	MS.gene005965:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	66120753	66123262	66120753	ID=MS.gene005965
chr1.3	mRNA	66120753	66123262	66120753	ID=MS.gene005965.t1;Parent=MS.gene005965
chr1.3	exon	66120753	66121835	66120753	ID=MS.gene005965.t1.exon1;Parent=MS.gene005965.t1
chr1.3	CDS	66120753	66121835	66120753	ID=cds.MS.gene005965.t1;Parent=MS.gene005965.t1
chr1.3	exon	66122474	66122526	66122474	ID=MS.gene005965.t1.exon2;Parent=MS.gene005965.t1
chr1.3	CDS	66122474	66122526	66122474	ID=cds.MS.gene005965.t1;Parent=MS.gene005965.t1
chr1.3	exon	66123082	66123262	66123082	ID=MS.gene005965.t1.exon3;Parent=MS.gene005965.t1
chr1.3	CDS	66123082	66123262	66123082	ID=cds.MS.gene005965.t1;Parent=MS.gene005965.t1

Gene Sequence

>MS.gene005965

ATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGCTTAGATTCACAACTATGGCACGCATGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTCTACTTTCCACAAGGTCATGCAGAACATGCTCATAACAAAGTAGATTTTTCCAAAACCCGTGTTCCACCTCTCATCCCTTGTAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACTGATGAAGCCTACGTCAAAATGAAACTAACCCCTTTAAGAGAAAACGAGTTAGATTTTGAAGAAGATTGTTTCTTTGGAAACAATGGCTTAGAGGGTCAAGAAAAGCCAGCTTCTTTTGCAAAGACATTAACACAATCTGATGCAAACAATGGTGGTGGTTTTTCTGTTCCTAGATACTGTGCTGAGACTATTTTTCCTAGGTTGGATTATTCAGCAGAACCACCTGTTCAGACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGACATATCTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGTAATTTTGTGAATCACAAGAAGCTTGTTGCTGGTGATTCAATTGTGTTTTTGAGAGCAGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCAAAGAAAGGTGGAATTGGTGGTGGAACTGATCAGTTTTCTAATTCTTCTAGTACTTGGAACCGTGTATCACCTTTGTTTGGTGGTGGTGGTTCTGGTTTCTTGTGTGGAAATGAGAACAGAAAAAATGGTGGCAATGATTTGATGGGAAAAGTGGGAGCTGAATCTGTTGTTGAAGCTGTAAACTGTGCTGTTAATGGAAGATCTTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTTATGGGAACAATTTCTTCTGTTCATGTTCAAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAACAATATTATTATAACATCATTATAGATTTTTCATATTATGCATCTTTGATTGATTCTGAGTCAATTCTGACTAATAGTTAAATTGCATCTTGAACTTTTGACTATTTCTTAGACTATTTTTTTTCTATGTAAAAAGTTAGACAATCATGTACTGTTACAGTACTGTTGAATTCAGTGCATCAATAAGATGGAACAGTTTACAGTTTGTCAGATTGAGATGATTTTTCTGATACAGATTATTATTATTTGTTTATGACTTTATTATCTGTTGCATTTCTTATTAAATAATTACTGTAGAAAATTTTACTACTTACTGTGTCAGATGTGTATGACCTGTTAAGCAAGAATTAAATTAAACTAAAAGATATTTGACATTTGTTGCTATAAATAGAATTGTTAATGATTTGACATTATAGTAAAGTTGCAAATGATTTCAACTATGAGTAAGTCTCATCAGTACTGACAATTGTTCCTACTAGTACTATCTACCATAGTTGCTACTTGCTAGAATTTGGTACTTCCTTGAGAGAAAGTTATTAAGTTTGTACCTACTTAATTGGCTTGAAGTAATAATTTGATTAAAATAATCTAAAGATTGTTCTAAATTTCTTGTTTATGATGTCATGTTTTCCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAACTTCAATCTCTCACCATTCACACCTCCAAGAAAGAAACCAAGGTTTATTCAAGATCCATATTTTCACCTCATAAATCAACTTCCAATGCCATCATCATCATCACCATCAATCTCCAACATTAATCTTCTCAATTACACAAAATCATCTCTCTGTAACATTCAAGACACTACTACTAATAGTTCTTTTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACCAAATAATAATCCATCTGATTTAATTCCCTTCAACAAGCTACTACAACAAGACATGTTTCTTGGTAACTTGTCATTGTCAAGGTTTAATCATCAACAACCGATAACTAGGCCTCCTTATGGACCCTACAAGAGTATCAATAACAATAACAACACTAAGAACAATGTTGACTTGTCTTGCTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAATCCAATATTGAAGCAAAAGCACCCCATAACCATAACCATATTTTGTTATTTGGAAAAATCATTCACACTGAACAAAACAGTTCAAATATTTCAAAGAGTGGTTCTGTTTCTGAAGGAACTTCTTTGAAAACATCAAATGCTTCTTCTTCTGATCCAGTTGAGAATTCTTCTGATGGAGGCTCTCCTTGGTATAAGGATCAACAACACAAGCCTGATCTTGTTGGAACAGAAAATGTTACTGCATTGTGTATGGCTTCATAA

Protein sequence

>MS.gene005965.t1

MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHNKVDFSKTRVPPLIPCRISAMKYMADPETDEAYVKMKLTPLRENELDFEEDCFFGNNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSSTWNRVSPLFGGGGSGFLCGNENRKNGGNDLMGKVGAESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPCSNISKSGSVSEGTSLKTSNASSSDPVENSSDGGSPWYKDQQHKPDLVGTENVTALCMAS