Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005971.t1 | AFK34304.1 | 98.7 | 228 | 3 | 0 | 25 | 252 | 53 | 280 | 2.00E-126 | 461.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005971.t1 | G7I387 | 98.7 | 228 | 3 | 0 | 25 | 252 | 53 | 280 | 1.4e-126 | 461.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005971.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005971.t1 | MTR_1g095000 | 98.684 | 228 | 3 | 0 | 25 | 252 | 53 | 280 | 4.52e-170 | 470 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005971.t1 | AT2G39000 | 76.444 | 225 | 53 | 0 | 25 | 249 | 58 | 282 | 1.18e-132 | 376 |
| MS.gene005971.t1 | AT2G39000 | 76.444 | 225 | 53 | 0 | 25 | 249 | 2 | 226 | 1.29e-132 | 374 |
| MS.gene005971.t1 | AT2G39000 | 79.699 | 133 | 27 | 0 | 25 | 157 | 58 | 190 | 9.82e-77 | 231 |
| MS.gene005971.t1 | AT2G39000 | 79.545 | 132 | 27 | 0 | 25 | 156 | 58 | 189 | 4.51e-76 | 230 |
Find 63 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATCAAACTTTCTTATT+TGG | 0.151315 | 1.3:-66223093 | MS.gene005971:CDS |
| ACCTGTCTGGTTGCTGTTAT+TGG | 0.195810 | 1.3:-66223123 | MS.gene005971:CDS |
| TAAGGAGTGAAATGGATATA+TGG | 0.257912 | 1.3:-66223432 | MS.gene005971:CDS |
| TTTCAAATCTATAAAGGTTC+CGG | 0.297267 | 1.3:-66221699 | MS.gene005971:CDS |
| TGTCGCAGAGGCCCCTTTCT+AGG | 0.313734 | 1.3:+66222970 | None:intergenic |
| GCAAGGTTTCAAATCTATAA+AGG | 0.323365 | 1.3:-66221705 | MS.gene005971:CDS |
| CACTCCTTAACTTACATAGA+TGG | 0.330300 | 1.3:+66223446 | None:intergenic |
| TCTAATGGAAATGAATATTC+AGG | 0.338599 | 1.3:+66223216 | None:intergenic |
| AGGCAAGAATAGAGGATTGT+TGG | 0.356437 | 1.3:-66223272 | MS.gene005971:CDS |
| ATCCTCAACACAAAATCTAA+TGG | 0.371362 | 1.3:+66223201 | None:intergenic |
| GGCACGACATCCCCAACTTC+TGG | 0.376576 | 1.3:+66221781 | None:intergenic |
| AAGGAGTGAAATGGATATAT+GGG | 0.377244 | 1.3:-66223431 | MS.gene005971:CDS |
| AGTGAAGACTTCAAGATTGC+GGG | 0.393136 | 1.3:-66223069 | MS.gene005971:CDS |
| GCCTCTCTAACAGTGATCTC+AGG | 0.394323 | 1.3:+66223291 | None:intergenic |
| GGCAAGAATAGAGGATTGTT+GGG | 0.399207 | 1.3:-66223271 | MS.gene005971:CDS |
| TTCAAATCTATAAAGGTTCC+GGG | 0.414198 | 1.3:-66221698 | MS.gene005971:CDS |
| CTAGCCATCTATGTAAGTTA+AGG | 0.414609 | 1.3:-66223450 | MS.gene005971:CDS |
| TGTGTTGAGGATGGATAGAT+TGG | 0.415569 | 1.3:-66223190 | MS.gene005971:CDS |
| AGAATCACAAGCCAGAAGTT+GGG | 0.428773 | 1.3:-66221792 | MS.gene005971:CDS |
| AGGTTCCGGGAGGAGCTAAC+TGG | 0.431391 | 1.3:-66221685 | MS.gene005971:CDS |
| AGCTAAACAATTGGTGGCTA+AGG | 0.435007 | 1.3:-66221816 | MS.gene005971:CDS |
| ATGTAAGTTAAGGAGTGAAA+TGG | 0.446706 | 1.3:-66223440 | MS.gene005971:CDS |
| TGCAGACTTTCTACCTAGAA+AGG | 0.446932 | 1.3:-66222983 | MS.gene005971:CDS |
| ATGAAGTTGAACTTCACATC+TGG | 0.450823 | 1.3:+66221644 | None:intergenic |
| CAGAATCACAAGCCAGAAGT+TGG | 0.456663 | 1.3:-66221793 | MS.gene005971:CDS |
| GCAGGATTCTCTTTACCAAA+TGG | 0.460775 | 1.3:-66223156 | MS.gene005971:CDS |
| GAAAGGAATAGCTAAACAAT+TGG | 0.467703 | 1.3:-66221825 | MS.gene005971:CDS |
| GCAGACTTTCTACCTAGAAA+GGG | 0.481732 | 1.3:-66222982 | MS.gene005971:CDS |
| TAGATTTGAAACCTTGCCCT+TGG | 0.481800 | 1.3:+66221711 | None:intergenic |
| TGGTATAACTTTGTTGCCGC+AGG | 0.491255 | 1.3:+66221731 | None:intergenic |
| AGATTGGTGGCTATGTTAGC+AGG | 0.496959 | 1.3:-66223174 | MS.gene005971:CDS |
| GAACAAATCAACAACTTGAC+TGG | 0.498714 | 1.3:+66223326 | None:intergenic |
| TGTTAGAGAGGCAAGAATAG+AGG | 0.524179 | 1.3:-66223280 | MS.gene005971:CDS |
| CTCAACAAGGGATATGTGGC+TGG | 0.532427 | 1.3:-66223027 | MS.gene005971:CDS |
| GCCAATAACAGCAACCAGAC+AGG | 0.535502 | 1.3:+66223122 | None:intergenic |
| AATAGAGGATTGTTGGGAAG+TGG | 0.538776 | 1.3:-66223265 | MS.gene005971:CDS |
| GAATCACAAGCCAGAAGTTG+GGG | 0.540089 | 1.3:-66221791 | MS.gene005971:CDS |
| AAGCCTCAACAAGGGATATG+TGG | 0.555870 | 1.3:-66223031 | MS.gene005971:CDS |
| AGGAATAGCTAAACAATTGG+TGG | 0.557067 | 1.3:-66221822 | MS.gene005971:CDS |
| CCTCTCTAACAGTGATCTCA+GGG | 0.558058 | 1.3:+66223292 | None:intergenic |
| TGGTTGCAAAAGAACCTGTC+TGG | 0.566369 | 1.3:-66223136 | MS.gene005971:CDS |
| CCCTGAGATCACTGTTAGAG+AGG | 0.573199 | 1.3:-66223292 | MS.gene005971:CDS |
| TGGCTAGCGTAAAATCTAGA+GGG | 0.577947 | 1.3:+66223466 | None:intergenic |
| AAGTGAAGACTTCAAGATTG+CGG | 0.578803 | 1.3:-66223070 | MS.gene005971:CDS |
| GTTGAGGATGGATAGATTGG+TGG | 0.579094 | 1.3:-66223187 | MS.gene005971:CDS |
| AGGGGCCTCTGCGACAGAGA+AGG | 0.581862 | 1.3:-66222963 | MS.gene005971:intron |
| TGAGGCCAGTTAGCTCCTCC+CGG | 0.584487 | 1.3:+66221680 | None:intergenic |
| CAGCCACATATCCCTTGTTG+AGG | 0.606889 | 1.3:+66223028 | None:intergenic |
| ACAAAGTTATACCAAGGGCA+AGG | 0.614543 | 1.3:-66221722 | MS.gene005971:CDS |
| ATGGCTAGCGTAAAATCTAG+AGG | 0.618955 | 1.3:+66223465 | None:intergenic |
| AGGAGTGAAATGGATATATG+GGG | 0.625834 | 1.3:-66223430 | MS.gene005971:intron |
| TGGGAAATTAAGCCTCAACA+AGG | 0.631474 | 1.3:-66223040 | MS.gene005971:CDS |
| TAAATCGCAGTGTAATGCAA+TGG | 0.632285 | 1.3:+66221760 | None:intergenic |
| CAGACTTTCTACCTAGAAAG+GGG | 0.636163 | 1.3:-66222981 | MS.gene005971:CDS |
| AATTGCATACATATCAAATG+TGG | 0.643430 | 1.3:-66221870 | MS.gene005971:CDS |
| CGGCAACAAAGTTATACCAA+GGG | 0.644825 | 1.3:-66221727 | MS.gene005971:CDS |
| GCGGCAACAAAGTTATACCA+AGG | 0.651915 | 1.3:-66221728 | MS.gene005971:CDS |
| ACTCACCTTCTCTGTCGCAG+AGG | 0.668717 | 1.3:+66222958 | None:intergenic |
| GGCTAGCGTAAAATCTAGAG+GGG | 0.685620 | 1.3:+66223467 | None:intergenic |
| GGGAAATTAAGCCTCAACAA+GGG | 0.686786 | 1.3:-66223039 | MS.gene005971:CDS |
| CTGCGATTTACGAAATCCTG+CGG | 0.698179 | 1.3:-66221747 | MS.gene005971:CDS |
| AAATCTATAAAGGTTCCGGG+AGG | 0.724022 | 1.3:-66221695 | MS.gene005971:CDS |
| CTCTCTAACAGTGATCTCAG+GGG | 0.746520 | 1.3:+66223293 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAATTTTAACATGTTT+TGG | + | chr1.3:66222441-66222460 | None:intergenic | 10.0% |
| !! | TTATGTATAAAAACTATTGT+AGG | - | chr1.3:66223193-66223212 | MS.gene005971:CDS | 15.0% |
| !!! | ATAAAAAGTAGTTTGTATTT+TGG | + | chr1.3:66222395-66222414 | None:intergenic | 15.0% |
| !!! | TGTATCTTTTTCTTATAATT+GGG | + | chr1.3:66222637-66222656 | None:intergenic | 15.0% |
| !!! | TTGTATCTTTTTCTTATAAT+TGG | + | chr1.3:66222638-66222657 | None:intergenic | 15.0% |
| !! | ATCAAAATTATAGCATTAAG+TGG | - | chr1.3:66222789-66222808 | MS.gene005971:intron | 20.0% |
| !!! | ATTTAATTTAGAGTCATGTT+TGG | - | chr1.3:66222758-66222777 | MS.gene005971:intron | 20.0% |
| !!! | TATGTTTCTAACTATGTATA+AGG | - | chr1.3:66223098-66223117 | MS.gene005971:CDS | 20.0% |
| !!! | TTTAATTTAGAGTCATGTTT+GGG | - | chr1.3:66222759-66222778 | MS.gene005971:intron | 20.0% |
| ! | AATTGCATACATATCAAATG+TGG | - | chr1.3:66223221-66223240 | MS.gene005971:CDS | 25.0% |
| ! | AGAGAAAAATTTAGACAGAA+AGG | - | chr1.3:66223249-66223268 | MS.gene005971:CDS | 25.0% |
| ! | AGATAACTTGAAAATTACAC+AGG | + | chr1.3:66222357-66222376 | None:intergenic | 25.0% |
| ! | ATATGGAATAGATGCATTAA+AGG | + | chr1.3:66222708-66222727 | None:intergenic | 25.0% |
| ! | ATCTATTCCATATAAACAGT+AGG | - | chr1.3:66222715-66222734 | MS.gene005971:intron | 25.0% |
| ! | ATGCATTAAAGGACAAAATA+AGG | + | chr1.3:66222697-66222716 | None:intergenic | 25.0% |
| ! | CAAAGTTAACATCACAAATT+AGG | + | chr1.3:66221700-66221719 | None:intergenic | 25.0% |
| ! | CTTGATCAAACTTTCTTATT+TGG | - | chr1.3:66221998-66222017 | MS.gene005971:intron | 25.0% |
| ! | TATAAAAACTATTGTAGGAC+TGG | - | chr1.3:66223198-66223217 | MS.gene005971:CDS | 25.0% |
| ! | TCTAATGGAAATGAATATTC+AGG | + | chr1.3:66221878-66221897 | None:intergenic | 25.0% |
| ! | TGCATTAAAGGACAAAATAA+GGG | + | chr1.3:66222696-66222715 | None:intergenic | 25.0% |
| ! | TTTCAAATCTATAAAGGTTC+CGG | - | chr1.3:66223392-66223411 | MS.gene005971:intron | 25.0% |
| !! | AACATAGTTTACCATTTTGA+AGG | + | chr1.3:66223084-66223103 | None:intergenic | 25.0% |
| !! | ACATAGTTTACCATTTTGAA+GGG | + | chr1.3:66223083-66223102 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTTATAATTGGG+AGG | + | chr1.3:66222634-66222653 | None:intergenic | 25.0% |
| !! | CTAATTTGTGATGTTAACTT+TGG | - | chr1.3:66221698-66221717 | MS.gene005971:CDS | 25.0% |
| !!! | ACAAACTACTTTTTATCTAG+AGG | - | chr1.3:66222399-66222418 | MS.gene005971:intron | 25.0% |
| !!! | ATTGTTTTTTTCTTTGACCA+GGG | - | chr1.3:66222828-66222847 | MS.gene005971:intron | 25.0% |
| !!! | TAAAACTTGTTTCTGAATCT+GGG | - | chr1.3:66222156-66222175 | MS.gene005971:intron | 25.0% |
| !!! | TTAAAACTTGTTTCTGAATC+TGG | - | chr1.3:66222155-66222174 | MS.gene005971:intron | 25.0% |
| AAAAATTGTTGAGACATGTC+TGG | + | chr1.3:66222495-66222514 | None:intergenic | 30.0% | |
| AAGGAGTGAAATGGATATAT+GGG | - | chr1.3:66221660-66221679 | MS.gene005971:CDS | 30.0% | |
| ACTAGTAACATGAGTAAACT+AGG | + | chr1.3:66223147-66223166 | None:intergenic | 30.0% | |
| ATCCTCAACACAAAATCTAA+TGG | + | chr1.3:66221893-66221912 | None:intergenic | 30.0% | |
| ATGTAAGTTAAGGAGTGAAA+TGG | - | chr1.3:66221651-66221670 | MS.gene005971:CDS | 30.0% | |
| GAAAATTACACAGGAATGAA+AGG | + | chr1.3:66222348-66222367 | None:intergenic | 30.0% | |
| GAAAGGAATAGCTAAACAAT+TGG | - | chr1.3:66223266-66223285 | MS.gene005971:CDS | 30.0% | |
| GAACTTAAAGTTATGGTGTT+TGG | - | chr1.3:66221724-66221743 | MS.gene005971:CDS | 30.0% | |
| GCAAGGTTTCAAATCTATAA+AGG | - | chr1.3:66223386-66223405 | MS.gene005971:intron | 30.0% | |
| TAAGGAGTGAAATGGATATA+TGG | - | chr1.3:66221659-66221678 | MS.gene005971:CDS | 30.0% | |
| TCTAAATTAAATGCTCTTCG+AGG | + | chr1.3:66222750-66222769 | None:intergenic | 30.0% | |
| TTCAAATCTATAAAGGTTCC+GGG | - | chr1.3:66223393-66223412 | MS.gene005971:intron | 30.0% | |
| TTGGTAGGAACTTAAAGTTA+TGG | - | chr1.3:66221717-66221736 | MS.gene005971:CDS | 30.0% | |
| TTTGTGATGTTAACTTTGGT+AGG | - | chr1.3:66221702-66221721 | MS.gene005971:CDS | 30.0% | |
| ! | ATTAGATTTTGTGTTGAGGA+TGG | - | chr1.3:66221892-66221911 | MS.gene005971:intron | 30.0% |
| ! | TTCCATTAGATTTTGTGTTG+AGG | - | chr1.3:66221888-66221907 | MS.gene005971:intron | 30.0% |
| !! | TTCTGTTTTAAACAAGTGCA+AGG | + | chr1.3:66222961-66222980 | None:intergenic | 30.0% |
| !!! | GATTGTTTTTTTCTTTGACC+AGG | - | chr1.3:66222827-66222846 | MS.gene005971:intron | 30.0% |
| AAGTGAAGACTTCAAGATTG+CGG | - | chr1.3:66222021-66222040 | MS.gene005971:intron | 35.0% | |
| AAGTTATGGTGTTTGGATGT+AGG | - | chr1.3:66221731-66221750 | MS.gene005971:CDS | 35.0% | |
| AATTAAATGCTCTTCGAGGA+TGG | + | chr1.3:66222746-66222765 | None:intergenic | 35.0% | |
| AGGAATAGCTAAACAATTGG+TGG | - | chr1.3:66223269-66223288 | MS.gene005971:CDS | 35.0% | |
| AGGAGTGAAATGGATATATG+GGG | - | chr1.3:66221661-66221680 | MS.gene005971:CDS | 35.0% | |
| ATGAAGTTGAACTTCACATC+TGG | + | chr1.3:66223450-66223469 | None:intergenic | 35.0% | |
| ATGTGATAAATGTTACTCCC+TGG | + | chr1.3:66222848-66222867 | None:intergenic | 35.0% | |
| CACTCCTTAACTTACATAGA+TGG | + | chr1.3:66221648-66221667 | None:intergenic | 35.0% | |
| CCAGTCTCATGTATAAGAAA+AGG | - | chr1.3:66222594-66222613 | MS.gene005971:intron | 35.0% | |
| CTAGCCATCTATGTAAGTTA+AGG | - | chr1.3:66221641-66221660 | MS.gene005971:CDS | 35.0% | |
| GAACAAATCAACAACTTGAC+TGG | + | chr1.3:66221768-66221787 | None:intergenic | 35.0% | |
| GGTAACACCTACTGTTTATA+TGG | + | chr1.3:66222725-66222744 | None:intergenic | 35.0% | |
| TAAATCGCAGTGTAATGCAA+TGG | + | chr1.3:66223334-66223353 | None:intergenic | 35.0% | |
| TCTCTTCATATTGATCACTG+AGG | - | chr1.3:66222988-66223007 | MS.gene005971:CDS | 35.0% | |
| TTCTTATACATGAGACTGGA+GGG | + | chr1.3:66222593-66222612 | None:intergenic | 35.0% | |
| TTTCTTATACATGAGACTGG+AGG | + | chr1.3:66222594-66222613 | None:intergenic | 35.0% | |
| ! | CCTTTTCTTATACATGAGAC+TGG | + | chr1.3:66222597-66222616 | None:intergenic | 35.0% |
| ! | TTCACATCTGGAGAAGTTTT+TGG | + | chr1.3:66223438-66223457 | None:intergenic | 35.0% |
| !! | AGACAAGCTAGAAGCATTTA+AGG | + | chr1.3:66222549-66222568 | None:intergenic | 35.0% |
| AAATCTATAAAGGTTCCGGG+AGG | - | chr1.3:66223396-66223415 | MS.gene005971:intron | 40.0% | |
| AATAGAGGATTGTTGGGAAG+TGG | - | chr1.3:66221826-66221845 | MS.gene005971:CDS | 40.0% | |
| ACAAAGTTATACCAAGGGCA+AGG | - | chr1.3:66223369-66223388 | MS.gene005971:intron | 40.0% | |
| AGAATCACAAGCCAGAAGTT+GGG | - | chr1.3:66223299-66223318 | MS.gene005971:CDS | 40.0% | |
| AGGCAAGAATAGAGGATTGT+TGG | - | chr1.3:66221819-66221838 | MS.gene005971:CDS | 40.0% | |
| AGTGAAGACTTCAAGATTGC+GGG | - | chr1.3:66222022-66222041 | MS.gene005971:intron | 40.0% | |
| ATGGCTAGCGTAAAATCTAG+AGG | + | chr1.3:66221629-66221648 | None:intergenic | 40.0% | |
| ATTGATCACTGAGGCAAGAA+TGG | - | chr1.3:66222997-66223016 | MS.gene005971:CDS | 40.0% | |
| CAGACTTTCTACCTAGAAAG+GGG | - | chr1.3:66222110-66222129 | MS.gene005971:intron | 40.0% | |
| CGGCAACAAAGTTATACCAA+GGG | - | chr1.3:66223364-66223383 | MS.gene005971:intron | 40.0% | |
| GCAGACTTTCTACCTAGAAA+GGG | - | chr1.3:66222109-66222128 | MS.gene005971:intron | 40.0% | |
| GCAGGATTCTCTTTACCAAA+TGG | - | chr1.3:66221935-66221954 | MS.gene005971:intron | 40.0% | |
| GGCAAGAATAGAGGATTGTT+GGG | - | chr1.3:66221820-66221839 | MS.gene005971:CDS | 40.0% | |
| GGGAAATTAAGCCTCAACAA+GGG | - | chr1.3:66222052-66222071 | MS.gene005971:intron | 40.0% | |
| TCCTGCATTACCCTTCAAAA+TGG | - | chr1.3:66223070-66223089 | MS.gene005971:CDS | 40.0% | |
| TGACATGCGATGAAAGAACA+TGG | + | chr1.3:66222913-66222932 | None:intergenic | 40.0% | |
| TGCAGACTTTCTACCTAGAA+AGG | - | chr1.3:66222108-66222127 | MS.gene005971:intron | 40.0% | |
| TGGCTAGCGTAAAATCTAGA+GGG | + | chr1.3:66221628-66221647 | None:intergenic | 40.0% | |
| TGGGAAATTAAGCCTCAACA+AGG | - | chr1.3:66222051-66222070 | MS.gene005971:intron | 40.0% | |
| TGTGTTGAGGATGGATAGAT+TGG | - | chr1.3:66221901-66221920 | MS.gene005971:intron | 40.0% | |
| TGTTAGAGAGGCAAGAATAG+AGG | - | chr1.3:66221811-66221830 | MS.gene005971:CDS | 40.0% | |
| ! | AGCTAAACAATTGGTGGCTA+AGG | - | chr1.3:66223275-66223294 | MS.gene005971:CDS | 40.0% |
| ! | CAGGTTCTTTTGCAACCATT+TGG | + | chr1.3:66221953-66221972 | None:intergenic | 40.0% |
| ! | TAGATTTGAAACCTTGCCCT+TGG | + | chr1.3:66223383-66223402 | None:intergenic | 40.0% |
| !! | ACCATTTTGAAGGGTAATGC+AGG | + | chr1.3:66223074-66223093 | None:intergenic | 40.0% |
| !! | CTGAGGCAAGAATGGATTTT+TGG | - | chr1.3:66223005-66223024 | MS.gene005971:CDS | 40.0% |
| !! | TCAAGATTGCGGGTTTTGAT+GGG | - | chr1.3:66222032-66222051 | MS.gene005971:intron | 40.0% |
| !! | TTCAAGATTGCGGGTTTTGA+TGG | - | chr1.3:66222031-66222050 | MS.gene005971:intron | 40.0% |
| !!! | TCTGGAGAAGTTTTTGGTTG+AGG | + | chr1.3:66223432-66223451 | None:intergenic | 40.0% |
| AAGCCTCAACAAGGGATATG+TGG | - | chr1.3:66222060-66222079 | MS.gene005971:intron | 45.0% | |
| ACACAGGAATGAAAGGCAAG+CGG | + | chr1.3:66222341-66222360 | None:intergenic | 45.0% | |
| CAGAATCACAAGCCAGAAGT+TGG | - | chr1.3:66223298-66223317 | MS.gene005971:CDS | 45.0% | |
| CCTCTCTAACAGTGATCTCA+GGG | + | chr1.3:66221802-66221821 | None:intergenic | 45.0% | |
| CGCATGTCAATAGTTCTTCG+TGG | - | chr1.3:66222924-66222943 | MS.gene005971:intron | 45.0% | |
| CTCTCTAACAGTGATCTCAG+GGG | + | chr1.3:66221801-66221820 | None:intergenic | 45.0% | |
| CTGAATTCGCTCTTGTCTTC+CGG | - | chr1.3:66222466-66222485 | MS.gene005971:intron | 45.0% | |
| CTGCGATTTACGAAATCCTG+CGG | - | chr1.3:66223344-66223363 | MS.gene005971:intron | 45.0% | |
| GAAATGGATATATGGGGTGC+TGG | - | chr1.3:66221667-66221686 | MS.gene005971:CDS | 45.0% | |
| GAATCACAAGCCAGAAGTTG+GGG | - | chr1.3:66223300-66223319 | MS.gene005971:CDS | 45.0% | |
| GCGGCAACAAAGTTATACCA+AGG | - | chr1.3:66223363-66223382 | MS.gene005971:intron | 45.0% | |
| GGCTAGCGTAAAATCTAGAG+GGG | + | chr1.3:66221627-66221646 | None:intergenic | 45.0% | |
| GTTGAGGATGGATAGATTGG+TGG | - | chr1.3:66221904-66221923 | MS.gene005971:intron | 45.0% | |
| TGAATCTGGGTTTGTGAGTG+AGG | - | chr1.3:66222169-66222188 | MS.gene005971:intron | 45.0% | |
| TGGTATAACTTTGTTGCCGC+AGG | + | chr1.3:66223363-66223382 | None:intergenic | 45.0% | |
| TGGTTGCAAAAGAACCTGTC+TGG | - | chr1.3:66221955-66221974 | MS.gene005971:intron | 45.0% | |
| ! | ACCTGTCTGGTTGCTGTTAT+TGG | - | chr1.3:66221968-66221987 | MS.gene005971:intron | 45.0% |
| ! | AGATTGGTGGCTATGTTAGC+AGG | - | chr1.3:66221917-66221936 | MS.gene005971:intron | 45.0% |
| CAGCCACATATCCCTTGTTG+AGG | + | chr1.3:66222066-66222085 | None:intergenic | 50.0% | |
| CCCTGAGATCACTGTTAGAG+AGG | - | chr1.3:66221799-66221818 | MS.gene005971:CDS | 50.0% | |
| CTCAACAAGGGATATGTGGC+TGG | - | chr1.3:66222064-66222083 | MS.gene005971:intron | 50.0% | |
| GCCAATAACAGCAACCAGAC+AGG | + | chr1.3:66221972-66221991 | None:intergenic | 50.0% | |
| GCCTCTCTAACAGTGATCTC+AGG | + | chr1.3:66221803-66221822 | None:intergenic | 50.0% | |
| GTTGAGACATGTCTGGACTC+CGG | + | chr1.3:66222488-66222507 | None:intergenic | 50.0% | |
| ! | ATGAGACTGGAGGGAGTATG+TGG | + | chr1.3:66222584-66222603 | None:intergenic | 50.0% |
| ACTCACCTTCTCTGTCGCAG+AGG | + | chr1.3:66222136-66222155 | None:intergenic | 55.0% | |
| AGGTTCCGGGAGGAGCTAAC+TGG | - | chr1.3:66223406-66223425 | MS.gene005971:intron | 60.0% | |
| GGCACGACATCCCCAACTTC+TGG | + | chr1.3:66223313-66223332 | None:intergenic | 60.0% | |
| TGAGGCCAGTTAGCTCCTCC+CGG | + | chr1.3:66223414-66223433 | None:intergenic | 60.0% | |
| TGTCGCAGAGGCCCCTTTCT+AGG | + | chr1.3:66222124-66222143 | None:intergenic | 60.0% | |
| AGGGGCCTCTGCGACAGAGA+AGG | - | chr1.3:66222128-66222147 | MS.gene005971:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 66221610 | 66223503 | 66221610 | ID=MS.gene005971 |
| chr1.3 | mRNA | 66221610 | 66223503 | 66221610 | ID=MS.gene005971.t1;Parent=MS.gene005971 |
| chr1.3 | exon | 66223431 | 66223503 | 66223431 | ID=MS.gene005971.t1.exon1;Parent=MS.gene005971.t1 |
| chr1.3 | CDS | 66223431 | 66223503 | 66223431 | ID=cds.MS.gene005971.t1;Parent=MS.gene005971.t1 |
| chr1.3 | exon | 66222964 | 66223360 | 66222964 | ID=MS.gene005971.t1.exon2;Parent=MS.gene005971.t1 |
| chr1.3 | CDS | 66222964 | 66223360 | 66222964 | ID=cds.MS.gene005971.t1;Parent=MS.gene005971.t1 |
| chr1.3 | exon | 66221610 | 66221898 | 66221610 | ID=MS.gene005971.t1.exon3;Parent=MS.gene005971.t1 |
| chr1.3 | CDS | 66221610 | 66221898 | 66221610 | ID=cds.MS.gene005971.t1;Parent=MS.gene005971.t1 |
| Gene Sequence |
| Protein sequence |
