AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006025

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006025.t1 MTR_1g096030 98.915 461 5 0 1 461 1 461 0.0 943
MS.gene006025.t1 MTR_7g027190 33.898 413 221 14 70 459 290 673 9.54e-64 218
MS.gene006025.t1 MTR_7g074650 32.718 379 222 10 85 459 443 792 3.62e-52 188
MS.gene006025.t1 MTR_4g102790 32.426 404 232 13 74 461 286 664 1.25e-51 185
MS.gene006025.t1 MTR_3g065980 31.463 410 222 15 74 459 166 540 1.94e-50 180
MS.gene006025.t1 MTR_5g097480 30.995 442 250 15 38 459 138 544 1.60e-48 174
MS.gene006025.t1 MTR_3g089055 28.967 397 238 12 79 459 202 570 2.43e-45 166
MS.gene006025.t1 MTR_3g089055 28.967 397 238 12 79 459 197 565 2.53e-45 166
MS.gene006025.t1 MTR_1g029420 29.723 397 235 12 79 459 224 592 3.36e-45 166
MS.gene006025.t1 MTR_5g094450 29.064 406 234 14 77 459 158 532 9.93e-45 164
MS.gene006025.t1 MTR_4g104020 29.782 413 234 15 72 460 141 521 1.17e-44 164
MS.gene006025.t1 MTR_4g077760 32.161 398 225 13 76 459 189 555 2.36e-43 160
MS.gene006025.t1 MTR_3g056110 28.894 398 241 13 77 459 172 542 3.87e-43 160
MS.gene006025.t1 MTR_1g069725 30.576 399 232 15 70 458 99 462 2.48e-42 156
MS.gene006025.t1 MTR_4g133660 30.348 402 233 15 75 458 170 542 3.19e-41 154
MS.gene006025.t1 MTR_5g058860 30.602 415 241 12 70 461 109 499 5.96e-41 153
MS.gene006025.t1 MTR_2g082090 28.817 465 257 17 22 459 162 579 7.51e-41 154
MS.gene006025.t1 MTR_4g064200 30.025 403 237 13 72 458 276 649 1.28e-40 154
MS.gene006025.t1 MTR_3g072710 31.221 426 220 16 70 458 110 499 4.29e-40 150
MS.gene006025.t1 MTR_4g076020 29.381 388 216 11 85 460 89 430 1.15e-39 148
MS.gene006025.t1 MTR_2g026250 30.159 378 210 14 103 459 252 596 1.79e-37 145
MS.gene006025.t1 MTR_8g442410 29.298 413 229 17 74 459 149 525 7.00e-37 142
MS.gene006025.t1 MTR_4g064150 29.750 400 238 14 77 458 358 732 3.40e-36 142
MS.gene006025.t1 MTR_4g064120 29.188 394 236 13 77 452 251 619 4.70e-35 138
MS.gene006025.t1 MTR_4g064180 29.640 361 222 12 77 419 251 597 2.95e-34 135
MS.gene006025.t1 MTR_7g062120 27.204 397 244 14 80 459 372 740 1.06e-33 135
MS.gene006025.t1 MTR_2g097310 29.146 398 231 15 80 458 272 637 1.09e-33 134
MS.gene006025.t1 MTR_2g097467 26.087 414 259 13 61 458 271 653 8.52e-33 132
MS.gene006025.t1 MTR_2g097410 26.895 409 244 14 73 458 364 740 2.43e-32 130
MS.gene006025.t1 MTR_2g097463 26.263 396 250 11 77 458 287 654 2.81e-31 127
MS.gene006025.t1 MTR_2g097473 25.758 396 249 12 77 458 289 653 1.26e-30 125
MS.gene006025.t1 MTR_4g064160 28.173 394 242 15 80 458 316 683 5.86e-30 123
MS.gene006025.t1 MTR_2g034260 25.598 418 260 13 65 459 195 584 1.63e-29 121
MS.gene006025.t1 MTR_2g097390 27.157 394 244 13 80 458 275 640 2.58e-29 121
MS.gene006025.t1 MTR_2g097350 27.411 394 243 15 80 458 274 639 2.20e-28 119
MS.gene006025.t1 MTR_4g097080 25.495 404 246 14 79 459 132 503 6.20e-28 116
MS.gene006025.t1 MTR_2g034250 25.542 415 265 12 65 459 195 585 1.58e-27 115
MS.gene006025.t1 MTR_8g093070 30.479 397 224 18 77 458 136 495 3.40e-27 114
MS.gene006025.t1 MTR_5g015490 27.451 408 239 15 79 459 113 490 7.11e-27 113
MS.gene006025.t1 MTR_2g034280 25.234 428 247 15 65 459 188 575 7.36e-27 114
MS.gene006025.t1 MTR_3g022830 23.661 448 256 13 71 459 16 436 8.47e-27 112
MS.gene006025.t1 MTR_2g097380 30.488 328 177 16 87 396 231 525 1.13e-26 113
MS.gene006025.t1 MTR_7g109580 25.845 414 255 14 67 461 176 556 3.02e-26 112
MS.gene006025.t1 MTR_0092s0100 26.368 402 235 16 77 459 372 731 4.31e-20 94.0
MS.gene006025.t1 MTR_0092s0100 26.368 402 235 16 77 459 369 728 4.37e-20 94.0
MS.gene006025.t1 MTR_6g047750 26.895 409 227 15 81 459 296 662 1.25e-19 92.4
MS.gene006025.t1 MTR_4g076140 28.889 225 150 4 71 293 39 255 4.29e-19 90.1
MS.gene006025.t1 MTR_4g076140 31.325 166 96 4 295 460 323 470 9.39e-18 85.9
MS.gene006025.t1 MTR_7g057230 26.263 396 240 13 81 458 295 656 4.98e-19 90.5
MS.gene006025.t1 MTR_5g009080 27.473 273 160 9 71 336 47 288 6.97e-19 89.4
MS.gene006025.t1 MTR_5g009080 29.070 172 104 4 289 460 326 479 1.61e-18 88.2
MS.gene006025.t1 MTR_5g015950 23.333 450 252 14 76 458 22 445 2.23e-18 87.8
MS.gene006025.t1 MTR_3g053270 23.333 450 252 14 76 458 22 445 2.23e-18 87.8
MS.gene006025.t1 MTR_2g089100 21.480 419 261 12 80 458 52 442 2.35e-18 87.8
MS.gene006025.t1 MTR_2g099110 24.590 366 240 11 111 459 105 451 3.47e-17 84.0
MS.gene006025.t1 MTR_8g020840 22.983 409 257 14 79 459 170 548 1.35e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006025.t1 AT3G54220 34.884 387 204 12 85 458 298 649 5.11e-55 194
MS.gene006025.t1 AT1G14920 32.767 412 225 16 63 459 155 529 1.51e-53 188
MS.gene006025.t1 AT2G04890 31.840 424 252 12 45 459 18 413 2.25e-52 182
MS.gene006025.t1 AT3G03450 32.587 402 222 16 74 459 177 545 2.40e-50 179
MS.gene006025.t1 AT5G41920 32.108 408 229 12 66 460 29 401 3.70e-50 176
MS.gene006025.t1 AT2G01570 30.941 404 223 16 73 459 217 581 2.44e-49 177
MS.gene006025.t1 AT1G21450 30.982 397 231 12 79 459 224 593 3.88e-49 177
MS.gene006025.t1 AT5G17490 32.039 412 224 18 64 459 145 516 1.73e-48 174
MS.gene006025.t1 AT1G66350 31.078 399 221 16 74 459 149 506 4.09e-47 170
MS.gene006025.t1 AT5G48150 30.380 395 232 13 81 459 123 490 1.31e-46 168
MS.gene006025.t1 AT5G48150 30.380 395 232 13 81 459 123 490 1.31e-46 168
MS.gene006025.t1 AT5G48150 30.380 395 232 13 81 459 123 490 1.31e-46 168
MS.gene006025.t1 AT5G48150 30.380 395 232 13 81 459 123 490 1.31e-46 168
MS.gene006025.t1 AT1G55580 31.075 428 221 16 80 459 44 445 3.16e-46 166
MS.gene006025.t1 AT1G63100 29.381 388 227 11 99 460 264 630 5.67e-46 169
MS.gene006025.t1 AT1G63100 29.381 388 227 11 99 460 289 655 1.10e-45 169
MS.gene006025.t1 AT5G66770 32.658 395 229 14 76 459 216 584 9.27e-45 165
MS.gene006025.t1 AT4G08250 31.127 408 238 14 70 460 97 478 2.30e-42 157
MS.gene006025.t1 AT1G50600 29.873 395 235 12 80 459 159 526 1.14e-41 155
MS.gene006025.t1 AT3G50650 33.155 374 214 12 98 459 193 542 1.35e-41 155
MS.gene006025.t1 AT1G50600 29.873 395 235 12 80 459 230 597 5.09e-41 155
MS.gene006025.t1 AT1G50600 29.873 395 235 12 80 459 234 601 6.73e-41 154
MS.gene006025.t1 AT4G17230 29.829 409 227 13 75 459 153 525 6.84e-37 142
MS.gene006025.t1 AT4G17230 29.829 409 227 13 75 459 153 525 6.84e-37 142
MS.gene006025.t1 AT1G50420 27.193 456 235 17 74 459 51 479 1.04e-31 127
MS.gene006025.t1 AT2G29060 27.456 397 250 13 80 461 284 657 1.32e-31 128
MS.gene006025.t1 AT2G29060 27.456 397 250 13 80 461 321 694 1.63e-31 128
MS.gene006025.t1 AT2G37650 25.505 396 252 13 80 460 335 702 2.82e-30 124
MS.gene006025.t1 AT2G37650 25.505 396 252 13 80 460 347 714 3.29e-30 124
MS.gene006025.t1 AT2G29065 25.980 408 241 16 80 458 252 627 2.46e-29 121
MS.gene006025.t1 AT1G07530 26.396 394 250 14 80 458 396 764 4.23e-28 118
MS.gene006025.t1 AT3G46600 26.196 397 251 13 79 460 3 372 1.03e-27 114
MS.gene006025.t1 AT5G59450 25.369 406 259 13 72 459 219 598 3.22e-27 115
MS.gene006025.t1 AT3G46600 26.329 395 251 13 79 459 211 579 3.46e-27 115
MS.gene006025.t1 AT1G07520 25.187 401 252 15 80 458 154 528 4.87e-27 114
MS.gene006025.t1 AT1G07520 25.187 401 252 15 80 458 154 528 4.87e-27 114
MS.gene006025.t1 AT3G46600 26.329 395 251 13 79 459 179 547 5.43e-27 114
MS.gene006025.t1 AT1G07520 25.187 401 252 15 80 458 318 692 6.35e-27 114
MS.gene006025.t1 AT1G07520 25.187 401 252 15 80 458 319 693 7.04e-27 114
MS.gene006025.t1 AT3G60630 29.909 331 172 15 152 459 329 622 8.35e-26 110
MS.gene006025.t1 AT4G37650 23.716 409 258 13 80 459 146 529 1.43e-21 97.8
MS.gene006025.t1 AT5G52510 25.679 405 242 15 81 459 269 640 1.82e-21 97.8
MS.gene006025.t1 AT2G45160 28.997 369 194 18 115 459 315 639 1.97e-21 97.8
MS.gene006025.t1 AT4G00150 27.446 368 208 17 105 459 233 554 1.01e-20 95.5
MS.gene006025.t1 AT4G36710 24.570 407 262 14 66 459 111 485 6.28e-20 92.8
MS.gene006025.t1 AT3G49950 23.058 412 252 13 79 458 29 407 6.60e-19 89.0

Find 57 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGGTGGTGGTGGTTTC+AGG 0.088549 1.3:+66833113 MS.gene006025:CDS
GATCAAGAGTAATTAATTTA+AGG 0.159758 1.3:+66832615 MS.gene006025:CDS
TCTCTTTAGGATGGCAAAAT+AGG 0.236883 1.3:+66833164 MS.gene006025:CDS
AGAATCTCTTTCAGATTAAC+TGG 0.292650 1.3:+66832488 MS.gene006025:CDS
TCTTTCAGATTAACTGGTTT+CGG 0.307035 1.3:+66832494 MS.gene006025:CDS
GTTAGTTTCTCAAAAGGTTT+TGG 0.310158 1.3:+66832557 MS.gene006025:CDS
CACAGCAAATCAAGCTATCT+TGG 0.326969 1.3:+66832340 MS.gene006025:CDS
GTGAGAAGTAAGTGAATTAA+TGG 0.332976 1.3:-66832062 None:intergenic
GATGGAAGGGCTATCTCTTT+AGG 0.338311 1.3:+66833151 MS.gene006025:CDS
TCCATCAACATTTCATAGAA+TGG 0.366218 1.3:-66832239 None:intergenic
AGAAACTCTTCGTCGATTGT+TGG 0.372995 1.3:-66832266 None:intergenic
ATGGAGAATCATGGATTTGT+TGG 0.401767 1.3:+66833007 MS.gene006025:CDS
ACCATTCTATGAAATGTTGA+TGG 0.404027 1.3:+66832238 MS.gene006025:CDS
AGAAGGTGGTGGTGGTTTCA+GGG 0.404726 1.3:+66833114 MS.gene006025:CDS
AGTTTCCCTCACCGGTGATT+CGG 0.424793 1.3:+66832154 MS.gene006025:CDS
GAGTTTCAAGGTTTGTTAAG+AGG 0.425739 1.3:+66832593 MS.gene006025:CDS
TTCTGTTGATGAAAACAACT+TGG 0.427192 1.3:+66832094 MS.gene006025:CDS
CTGTTTGGTAAAGATCTGTT+AGG 0.427840 1.3:-66832133 None:intergenic
CCACTTCAATTTGAGGAAGA+AGG 0.429497 1.3:+66833097 MS.gene006025:CDS
TTGAAAATAACTGACACATT+GGG 0.429946 1.3:+66832701 MS.gene006025:CDS
CACCGGTGAGGGAAACTGTT+TGG 0.439723 1.3:-66832148 None:intergenic
AAGGTTAAGAATTGAGAAGA+AGG 0.444053 1.3:+66832883 MS.gene006025:CDS
CTTGATAAGAAGGTTCTACT+AGG 0.446731 1.3:-66832785 None:intergenic
TTGCTGTGAAATGAGCAAAT+TGG 0.450939 1.3:-66832325 None:intergenic
AGGTTAGTTAGTTTCTCAAA+AGG 0.468291 1.3:+66832551 MS.gene006025:CDS
TTTGAGGAAGAAGGTGGTGG+TGG 0.477498 1.3:+66833106 MS.gene006025:CDS
AGGGTTTCAGAAAGAGATGA+TGG 0.479941 1.3:+66833133 MS.gene006025:CDS
TTCTTTCTCTATTAACTGAA+AGG 0.482856 1.3:-66831878 None:intergenic
AACTCATATGAAGGCTATGA+AGG 0.484565 1.3:+66831960 MS.gene006025:CDS
ATTGAAAATAACTGACACAT+TGG 0.484927 1.3:+66832700 MS.gene006025:CDS
TTATTGTCCACTTCAATTTG+AGG 0.488195 1.3:+66833090 MS.gene006025:CDS
CTCAACATTGAAGATTCAAA+TGG 0.488668 1.3:+66832035 MS.gene006025:CDS
TACCAAACAGTTTCCCTCAC+CGG 0.497883 1.3:+66832146 MS.gene006025:CDS
GGAAACATGGAAAAGTAGAA+TGG 0.498264 1.3:+66832988 MS.gene006025:CDS
AGCTTCAAGAAACTGAATCT+AGG 0.507835 1.3:+66832531 MS.gene006025:CDS
AAAAGTAGAATGGAGAATCA+TGG 0.508498 1.3:+66832998 MS.gene006025:CDS
CCTTCTTCCTCAAATTGAAG+TGG 0.513172 1.3:-66833097 None:intergenic
AAATGAGCAAATTGGTAATA+CGG 0.517397 1.3:-66832317 None:intergenic
ACTAATAGAAACTCATATGA+AGG 0.526323 1.3:+66831951 MS.gene006025:CDS
GACACGTTGAACCGAATCAC+CGG 0.538056 1.3:-66832165 None:intergenic
AACCTTTCAATACTCTCAAG+TGG 0.550308 1.3:-66832866 None:intergenic
GTCTGTGAATCTTGATAAGA+AGG 0.567154 1.3:-66832795 None:intergenic
CAATTTGAGGAAGAAGGTGG+TGG 0.571559 1.3:+66833103 MS.gene006025:CDS
GTTGTTGTTGTTGAACAAGA+AGG 0.574596 1.3:+66832752 MS.gene006025:CDS
TTGAACCGAATCACCGGTGA+GGG 0.580280 1.3:-66832159 None:intergenic
GTCGTCGCATATTTCACCGA+TGG 0.586765 1.3:+66832185 MS.gene006025:CDS
TTTCAGAAAGAGATGATGGA+AGG 0.599854 1.3:+66833137 MS.gene006025:CDS
GCTTAATAACTATGATGATG+TGG 0.611848 1.3:+66832931 MS.gene006025:CDS
AATCAATAACATGAATAGAA+CGG 0.614448 1.3:-66832394 None:intergenic
TACCACTTGAGAGTATTGAA+AGG 0.618047 1.3:+66832864 MS.gene006025:CDS
GAAAGTGATTGAATCAGTGA+AGG 0.619627 1.3:-66832443 None:intergenic
TTCAGAAAGAGATGATGGAA+GGG 0.626052 1.3:+66833138 MS.gene006025:CDS
CTTCAATTTGAGGAAGAAGG+TGG 0.626263 1.3:+66833100 MS.gene006025:CDS
GAAGGGCTATCTCTTTAGGA+TGG 0.630794 1.3:+66833155 MS.gene006025:CDS
AATAACTATGATGATGTGGA+TGG 0.639203 1.3:+66832935 MS.gene006025:CDS
AACTATGATGATGTGGATGG+TGG 0.649454 1.3:+66832938 MS.gene006025:CDS
GTTGAACCGAATCACCGGTG+AGG 0.722471 1.3:-66832160 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGAGAAAGAAAAAAGAA+GGG + chr1.3:66831888-66831907 MS.gene006025:CDS 20.0%
!! AATATGAAAAAATGGAAACA+TGG + chr1.3:66832975-66832994 MS.gene006025:CDS 20.0%
!! AATCAATAACATGAATAGAA+CGG - chr1.3:66832397-66832416 None:intergenic 20.0%
!! GATCAAGAGTAATTAATTTA+AGG + chr1.3:66832615-66832634 MS.gene006025:CDS 20.0%
!! TAATAGAGAAAGAAAAAAGA+AGG + chr1.3:66831887-66831906 MS.gene006025:CDS 20.0%
!! TTGTGCAAAATATGAAAAAA+TGG + chr1.3:66832967-66832986 MS.gene006025:CDS 20.0%
!!! ACAACTCATTTTGTTTAAAT+AGG - chr1.3:66832678-66832697 None:intergenic 20.0%
!!! ATTGATTTTGATGTTTCATA+TGG + chr1.3:66832410-66832429 MS.gene006025:CDS 20.0%
! ACTAATAGAAACTCATATGA+AGG + chr1.3:66831951-66831970 MS.gene006025:CDS 25.0%
! ATTGAAAATAACTGACACAT+TGG + chr1.3:66832700-66832719 MS.gene006025:CDS 25.0%
! TTCTTTCTCTATTAACTGAA+AGG - chr1.3:66831881-66831900 None:intergenic 25.0%
! TTGAAAATAACTGACACATT+GGG + chr1.3:66832701-66832720 MS.gene006025:CDS 25.0%
!! AAATGAGCAAATTGGTAATA+CGG - chr1.3:66832320-66832339 None:intergenic 25.0%
!! ATGTTTCATATGGTTTTCAA+TGG + chr1.3:66832420-66832439 MS.gene006025:CDS 25.0%
!!! AACATTGTTTTTGAGTTTCA+AGG + chr1.3:66832581-66832600 MS.gene006025:CDS 25.0%
!!! TTTCTCTTCTTCTTTTTCAA+AGG - chr1.3:66832369-66832388 None:intergenic 25.0%
AAAAGTAGAATGGAGAATCA+TGG + chr1.3:66832998-66833017 MS.gene006025:CDS 30.0%
AAGGTTAAGAATTGAGAAGA+AGG + chr1.3:66832883-66832902 MS.gene006025:CDS 30.0%
ACCATTCTATGAAATGTTGA+TGG + chr1.3:66832238-66832257 MS.gene006025:CDS 30.0%
AGAATCTCTTTCAGATTAAC+TGG + chr1.3:66832488-66832507 MS.gene006025:CDS 30.0%
CTCAACATTGAAGATTCAAA+TGG + chr1.3:66832035-66832054 MS.gene006025:CDS 30.0%
GAAGAAGAAAAATGAAACTG+TGG + chr1.3:66832637-66832656 MS.gene006025:CDS 30.0%
GTGAGAAGTAAGTGAATTAA+TGG - chr1.3:66832065-66832084 None:intergenic 30.0%
TCCATCAACATTTCATAGAA+TGG - chr1.3:66832242-66832261 None:intergenic 30.0%
TTATTGTCCACTTCAATTTG+AGG + chr1.3:66833090-66833109 MS.gene006025:CDS 30.0%
TTGTTCAACAACAACAACAA+TGG - chr1.3:66832750-66832769 None:intergenic 30.0%
! AATAACTATGATGATGTGGA+TGG + chr1.3:66832935-66832954 MS.gene006025:CDS 30.0%
! AGAATTGAGAAGAAGGTTTT+TGG + chr1.3:66832890-66832909 MS.gene006025:CDS 30.0%
! AGGTTAGTTAGTTTCTCAAA+AGG + chr1.3:66832551-66832570 MS.gene006025:CDS 30.0%
! GCTTAATAACTATGATGATG+TGG + chr1.3:66832931-66832950 MS.gene006025:CDS 30.0%
! TCTTTCAGATTAACTGGTTT+CGG + chr1.3:66832494-66832513 MS.gene006025:CDS 30.0%
! TTCTGTTGATGAAAACAACT+TGG + chr1.3:66832094-66832113 MS.gene006025:CDS 30.0%
!! GTTAGTTTCTCAAAAGGTTT+TGG + chr1.3:66832557-66832576 MS.gene006025:CDS 30.0%
!!! AGAATGGTGATTTTTTTGTG+AGG - chr1.3:66832226-66832245 None:intergenic 30.0%
AACCTTTCAATACTCTCAAG+TGG - chr1.3:66832869-66832888 None:intergenic 35.0%
AACTCATATGAAGGCTATGA+AGG + chr1.3:66831960-66831979 MS.gene006025:CDS 35.0%
AGCTTCAAGAAACTGAATCT+AGG + chr1.3:66832531-66832550 MS.gene006025:CDS 35.0%
ATGGAGAATCATGGATTTGT+TGG + chr1.3:66833007-66833026 MS.gene006025:CDS 35.0%
CAACAACAACAACAATGGAA+GGG - chr1.3:66832745-66832764 None:intergenic 35.0%
CTGTTTGGTAAAGATCTGTT+AGG - chr1.3:66832136-66832155 None:intergenic 35.0%
CTTGATAAGAAGGTTCTACT+AGG - chr1.3:66832788-66832807 None:intergenic 35.0%
CTTTCAGAAAAAGCAACAAG+TGG + chr1.3:66832461-66832480 MS.gene006025:CDS 35.0%
GAAAGTGATTGAATCAGTGA+AGG - chr1.3:66832446-66832465 None:intergenic 35.0%
GAAGAAAAATGAAACTGTGG+CGG + chr1.3:66832640-66832659 MS.gene006025:CDS 35.0%
GGAAACATGGAAAAGTAGAA+TGG + chr1.3:66832988-66833007 MS.gene006025:CDS 35.0%
GTCTGTGAATCTTGATAAGA+AGG - chr1.3:66832798-66832817 None:intergenic 35.0%
TCAACAACAACAACAATGGA+AGG - chr1.3:66832746-66832765 None:intergenic 35.0%
TTGCTGTGAAATGAGCAAAT+TGG - chr1.3:66832328-66832347 None:intergenic 35.0%
! GAGTTTTGCAGTTAAACCAT+CGG - chr1.3:66832204-66832223 None:intergenic 35.0%
! GTTGTTGTTGTTGAACAAGA+AGG + chr1.3:66832752-66832771 MS.gene006025:CDS 35.0%
!! GAGTTTCAAGGTTTGTTAAG+AGG + chr1.3:66832593-66832612 MS.gene006025:CDS 35.0%
!! TACCACTTGAGAGTATTGAA+AGG + chr1.3:66832864-66832883 MS.gene006025:CDS 35.0%
!! TCTCTTTAGGATGGCAAAAT+AGG + chr1.3:66833164-66833183 MS.gene006025:CDS 35.0%
!! TTCAGAAAGAGATGATGGAA+GGG + chr1.3:66833138-66833157 MS.gene006025:CDS 35.0%
!! TTTCAGAAAGAGATGATGGA+AGG + chr1.3:66833137-66833156 MS.gene006025:CDS 35.0%
AGGGTTTCAGAAAGAGATGA+TGG + chr1.3:66833133-66833152 MS.gene006025:CDS 40.0%
CACAGCAAATCAAGCTATCT+TGG + chr1.3:66832340-66832359 MS.gene006025:CDS 40.0%
CCACTTCAATTTGAGGAAGA+AGG + chr1.3:66833097-66833116 MS.gene006025:CDS 40.0%
CCTTCTTCCTCAAATTGAAG+TGG - chr1.3:66833100-66833119 None:intergenic 40.0%
CTTCAATTTGAGGAAGAAGG+TGG + chr1.3:66833100-66833119 MS.gene006025:CDS 40.0%
! AACTATGATGATGTGGATGG+TGG + chr1.3:66832938-66832957 MS.gene006025:CDS 40.0%
! AGAAACTCTTCGTCGATTGT+TGG - chr1.3:66832269-66832288 None:intergenic 40.0%
! TTTTGCTTACTGTGTCAGCA+TGG + chr1.3:66833188-66833207 MS.gene006025:CDS 40.0%
CAATTTGAGGAAGAAGGTGG+TGG + chr1.3:66833103-66833122 MS.gene006025:CDS 45.0%
GATGGAAGGGCTATCTCTTT+AGG + chr1.3:66833151-66833170 MS.gene006025:CDS 45.0%
TACCAAACAGTTTCCCTCAC+CGG + chr1.3:66832146-66832165 MS.gene006025:CDS 45.0%
! GAAGGGCTATCTCTTTAGGA+TGG + chr1.3:66833155-66833174 MS.gene006025:CDS 45.0%
AGTTTCCCTCACCGGTGATT+CGG + chr1.3:66832154-66832173 MS.gene006025:CDS 50.0%
GACACGTTGAACCGAATCAC+CGG - chr1.3:66832168-66832187 None:intergenic 50.0%
GTCGTCGCATATTTCACCGA+TGG + chr1.3:66832185-66832204 MS.gene006025:CDS 50.0%
TTGAACCGAATCACCGGTGA+GGG - chr1.3:66832162-66832181 None:intergenic 50.0%
! TTTGAGGAAGAAGGTGGTGG+TGG + chr1.3:66833106-66833125 MS.gene006025:CDS 50.0%
!! AAGAAGGTGGTGGTGGTTTC+AGG + chr1.3:66833113-66833132 MS.gene006025:CDS 50.0%
!! AGAAGGTGGTGGTGGTTTCA+GGG + chr1.3:66833114-66833133 MS.gene006025:CDS 50.0%
CACCGGTGAGGGAAACTGTT+TGG - chr1.3:66832151-66832170 None:intergenic 55.0%
GTTGAACCGAATCACCGGTG+AGG - chr1.3:66832163-66832182 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 66831837 66833222 66831837 ID=MS.gene006025
chr1.3 mRNA 66831837 66833222 66831837 ID=MS.gene006025.t1;Parent=MS.gene006025
chr1.3 exon 66831837 66833222 66831837 ID=MS.gene006025.t1.exon1;Parent=MS.gene006025.t1
chr1.3 CDS 66831837 66833222 66831837 ID=cds.MS.gene006025.t1;Parent=MS.gene006025.t1
Gene Sequence

>MS.gene006025

ATGGAAGCTGATTCAGAAGAAGATGAGCTTCTGAATCTTAGCCTTTCAGTTAATAGAGAAAGAAAAAAGAAGGGAAAAATCATCATAAGTAGAGAAAATAACAACATGATGAGTACTAATAGAAACTCATATGAAGGCTATGAAGGAAAAATCTTTCATCTTCTTCAAATGAGAGAACAAATGCTAAGAAAAAGCACTCTCAACATTGAAGATTCAAATGGTCTTCCATTAATTCACTTACTTCTCACAACAGCAACTTCTGTTGATGAAAACAACTTGGATTCATCTCTTGAAAACCTAACAGATCTTTACCAAACAGTTTCCCTCACCGGTGATTCGGTTCAACGTGTCGTCGCATATTTCACCGATGGTTTAACTGCAAAACTCCTCACAAAAAAATCACCATTCTATGAAATGTTGATGGAAGAACCAACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTACAGAGTTTCACCGTATTACCAATTTGCTCATTTCACAGCAAATCAAGCTATCTTGGAAGCCTTTGAAAAAGAAGAAGAGAAAAATAACCGTTCTATTCATGTTATTGATTTTGATGTTTCATATGGTTTTCAATGGCCTTCACTGATTCAATCACTTTCAGAAAAAGCAACAAGTGGCAACAGAATCTCTTTCAGATTAACTGGTTTCGGTAAGAATTTAAAAGAGCTTCAAGAAACTGAATCTAGGTTAGTTAGTTTCTCAAAAGGTTTTGGTAACATTGTTTTTGAGTTTCAAGGTTTGTTAAGAGGATCAAGAGTAATTAATTTAAGGAAGAAGAAAAATGAAACTGTGGCGGTTAATTTAGTTTCCTATTTAAACAAAATGAGTTGTTTATTGAAAATAACTGACACATTGGGATTTGTTCATTCTCTTAACCCTTCCATTGTTGTTGTTGTTGAACAAGAAGGTAGTAAAAATCCTAGTAGAACCTTCTTATCAAGATTCACAGACACATTGCATTATTTTGCAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGTATTGAAAGGTTAAGAATTGAGAAGAAGGTTTTTGGTAAAGAGATTAAAAGCATGCTTAATAACTATGATGATGTGGATGGTGGTGTTGATTGTGCAAAATATGAAAAAATGGAAACATGGAAAAGTAGAATGGAGAATCATGGATTTGTTGGTATGAAAATGAGTTCAAAATGTTTAATACAAGCAAAATTGTTGCTTAAGATGAGAACACATTATTGTCCACTTCAATTTGAGGAAGAAGGTGGTGGTGGTTTCAGGGTTTCAGAAAGAGATGATGGAAGGGCTATCTCTTTAGGATGGCAAAATAGGTTTTTGCTTACTGTGTCAGCATGGCAATCACTTTGA
Protein sequence

>MS.gene006025.t1

MEADSEEDELLNLSLSVNRERKKKGKIIISRENNNMMSTNRNSYEGYEGKIFHLLQMREQMLRKSTLNIEDSNGLPLIHLLLTTATSVDENNLDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNRISFRLTGFGKNLKELQETESRLVSFSKGFGNIVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNKMSCLLKITDTLGFVHSLNPSIVVVVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKVFGKEIKSMLNNYDDVDGGVDCAKYEKMETWKSRMENHGFVGMKMSSKCLIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGRAISLGWQNRFLLTVSAWQSL