Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006039.t1 | XP_024641456.1 | 97.4 | 228 | 6 | 0 | 1 | 228 | 1 | 228 | 2.00E-125 | 458.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006039.t1 | A0A396JVI3 | 97.4 | 228 | 6 | 0 | 1 | 228 | 1 | 228 | 1.4e-125 | 458.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006039.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006039.t1 | MTR_1g096340 | 97.170 | 212 | 6 | 0 | 17 | 228 | 1 | 212 | 2.42e-153 | 424 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006039.t1 | AT4G09620 | 57.746 | 213 | 86 | 2 | 17 | 228 | 3 | 212 | 1.51e-80 | 240 |
| MS.gene006039.t1 | AT4G09620 | 57.746 | 213 | 86 | 2 | 17 | 228 | 3 | 212 | 1.51e-80 | 240 |
| MS.gene006039.t1 | AT4G09620 | 57.746 | 213 | 86 | 2 | 17 | 228 | 1 | 210 | 1.67e-80 | 240 |
Find 47 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGTTCATTCTCCTTAC+TGG | 0.079985 | 1.3:+67035430 | MS.gene006039:CDS |
| TCCATTTACTGCCTCAAATT+TGG | 0.102598 | 1.3:-67035478 | None:intergenic |
| CCTTCGAAATCCAAAAGTTT+TGG | 0.174584 | 1.3:+67035668 | MS.gene006039:CDS |
| CCCAAATTTGAGGCAGTAAA+TGG | 0.185063 | 1.3:+67035477 | MS.gene006039:CDS |
| AAATTACATCCAAGAACTTC+TGG | 0.252185 | 1.3:-67035567 | None:intergenic |
| ATATTATAACCCAAAACTTT+TGG | 0.261186 | 1.3:-67035678 | None:intergenic |
| CCATTTACTGCCTCAAATTT+GGG | 0.285378 | 1.3:-67035477 | None:intergenic |
| CCTTGTTCATTCTCCTTACT+GGG | 0.302250 | 1.3:+67035431 | MS.gene006039:CDS |
| CAATACTCCACTGCTCCTTC+AGG | 0.365711 | 1.3:-67035620 | None:intergenic |
| GGGTTATAATATTGATTGTA+AGG | 0.371787 | 1.3:+67035689 | MS.gene006039:CDS |
| GATATTTGGCGATGGAATAC+TGG | 0.376586 | 1.3:-67035208 | None:intergenic |
| AAGATACTTGGAAAAGCATT+TGG | 0.395197 | 1.3:+67035408 | MS.gene006039:CDS |
| ATGGAACATTAGATTATCTA+AGG | 0.403508 | 1.3:+67035496 | MS.gene006039:CDS |
| TTGCTAATGCAGGTATGGTT+AGG | 0.405289 | 1.3:+67032910 | MS.gene006039:intron |
| ATCGTGCAGGCTGATCTTGC+TGG | 0.416752 | 1.3:+67035177 | MS.gene006039:intron |
| CAAGAACTGTGCTGCAGAAT+CGG | 0.426988 | 1.3:-67032961 | None:intergenic |
| TGATTGTAAGGGAGATTGTA+AGG | 0.441638 | 1.3:+67035701 | MS.gene006039:CDS |
| GTATTGAAGGAAAATCTCTT+AGG | 0.453881 | 1.3:+67035637 | MS.gene006039:CDS |
| AGGCACAATGCACTAGATGC+TGG | 0.458361 | 1.3:+67035721 | MS.gene006039:CDS |
| CCTTCACCTTCTCGTCGCTC+TGG | 0.464197 | 1.3:+67032616 | MS.gene006039:CDS |
| TAACTTCGACGATGAAGAAA+AGG | 0.469350 | 1.3:+67035383 | MS.gene006039:CDS |
| AAGGAGCAGTGGAGTATTGA+AGG | 0.472993 | 1.3:+67035624 | MS.gene006039:CDS |
| GAAGAAAAGGACAAGATACT+TGG | 0.482017 | 1.3:+67035396 | MS.gene006039:CDS |
| GTGATGAAGATCGGAGTATG+TGG | 0.505034 | 1.3:+67035331 | MS.gene006039:CDS |
| TCACGATCTTCTCCCCAGTA+AGG | 0.522126 | 1.3:-67035444 | None:intergenic |
| CAGAATCGGTAGCGAGAAGA+GGG | 0.534232 | 1.3:-67032947 | None:intergenic |
| CAAATCATTCTACCAACCAT+TGG | 0.536249 | 1.3:+67035268 | MS.gene006039:CDS |
| GGTTATAATATTGATTGTAA+GGG | 0.549473 | 1.3:+67035690 | MS.gene006039:CDS |
| TGGCGATGGAATACTGGAAG+AGG | 0.558839 | 1.3:-67035202 | None:intergenic |
| GGCACAATGCACTAGATGCT+GGG | 0.562129 | 1.3:+67035722 | MS.gene006039:CDS |
| GAAGGAAGTTCCCAAATTTG+AGG | 0.566069 | 1.3:+67035467 | MS.gene006039:CDS |
| TAATCTCAAGTGATGAAGAT+CGG | 0.572690 | 1.3:+67035322 | MS.gene006039:CDS |
| CCAGAGCGACGAGAAGGTGA+AGG | 0.582685 | 1.3:-67032616 | None:intergenic |
| CCCAGTAAGGAGAATGAACA+AGG | 0.586733 | 1.3:-67035431 | None:intergenic |
| CTTGTTCATTCTCCTTACTG+GGG | 0.596220 | 1.3:+67035432 | MS.gene006039:CDS |
| TAAAGATCCTGAAGGAGCAG+TGG | 0.596954 | 1.3:+67035613 | MS.gene006039:CDS |
| AGCACAGTTCTTGTGTTGCA+AGG | 0.601341 | 1.3:+67032971 | MS.gene006039:CDS |
| ATGGTTGGTAGAATGATTTG+AGG | 0.603312 | 1.3:-67035265 | None:intergenic |
| AACTAACCAGAGCGACGAGA+AGG | 0.605348 | 1.3:-67032622 | None:intergenic |
| GCAGAATCGGTAGCGAGAAG+AGG | 0.606505 | 1.3:-67032948 | None:intergenic |
| AGAACGCAATATCCAATGGT+TGG | 0.612381 | 1.3:-67035280 | None:intergenic |
| TCGTAGAACGCAATATCCAA+TGG | 0.625607 | 1.3:-67035284 | None:intergenic |
| AGCTAATATAAAGATCCTGA+AGG | 0.630758 | 1.3:+67035605 | MS.gene006039:CDS |
| CTGGGGAGAAGATCGTGAGA+AGG | 0.634124 | 1.3:+67035449 | MS.gene006039:CDS |
| CAAGTCTTGCAAAAGCAAAG+TGG | 0.634464 | 1.3:+67035241 | MS.gene006039:CDS |
| TGATGAAGATCGGAGTATGT+GGG | 0.637812 | 1.3:+67035332 | MS.gene006039:CDS |
| AGAATCGGTAGCGAGAAGAG+GGG | 0.733500 | 1.3:-67032946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTAATATTTATTTTCTAT+GGG | + | chr1.3:67033004-67033023 | MS.gene006039:intron | 10.0% |
| !! | ACAAAAACAAAAAAACAAAT+TGG | - | chr1.3:67032758-67032777 | None:intergenic | 15.0% |
| !! | CATAGAAAATAAATATTAAG+AGG | - | chr1.3:67033005-67033024 | None:intergenic | 15.0% |
| !!! | CTCTTAATATTTATTTTCTA+TGG | + | chr1.3:67033003-67033022 | MS.gene006039:intron | 15.0% |
| !!! | TTTAATTGTAAAGCTTTAAA+GGG | + | chr1.3:67033973-67033992 | MS.gene006039:intron | 15.0% |
| !!! | TTTTAATTGTAAAGCTTTAA+AGG | + | chr1.3:67033972-67033991 | MS.gene006039:intron | 15.0% |
| !! | AAAAAAATCTCAACATAACA+TGG | + | chr1.3:67032732-67032751 | MS.gene006039:intron | 20.0% |
| !! | ATGCATAAGTTTAATATTGA+TGG | - | chr1.3:67035044-67035063 | None:intergenic | 20.0% |
| !! | ATTAATTGGTTATCTTTCTT+TGG | + | chr1.3:67034295-67034314 | MS.gene006039:intron | 20.0% |
| !! | CAGCAATAAATTACATTTAT+TGG | - | chr1.3:67032856-67032875 | None:intergenic | 20.0% |
| !! | TTACCATACATATTGATATT+AGG | + | chr1.3:67034744-67034763 | MS.gene006039:intron | 20.0% |
| !!! | AAAAAGAAAGTCAATGTTTT+TGG | - | chr1.3:67032672-67032691 | None:intergenic | 20.0% |
| !!! | AAAAGAAAGTCAATGTTTTT+GGG | - | chr1.3:67032671-67032690 | None:intergenic | 20.0% |
| !!! | ATATTATAACCCAAAACTTT+TGG | - | chr1.3:67035681-67035700 | None:intergenic | 20.0% |
| !!! | GGTTATAATATTGATTGTAA+GGG | + | chr1.3:67035690-67035709 | MS.gene006039:CDS | 20.0% |
| !!! | TTTTAGGACTTTGTATTTAA+AGG | + | chr1.3:67034660-67034679 | MS.gene006039:intron | 20.0% |
| ! | AAAAAATTTCCAGAAGTTCT+TGG | + | chr1.3:67035558-67035577 | MS.gene006039:CDS | 25.0% |
| ! | AGAATGCATAGTAGATTAAT+TGG | + | chr1.3:67034281-67034300 | MS.gene006039:intron | 25.0% |
| ! | ATCAATATGTATGGTAAACA+TGG | - | chr1.3:67034741-67034760 | None:intergenic | 25.0% |
| ! | ATGATATGTAACCTATATCT+AGG | - | chr1.3:67034896-67034915 | None:intergenic | 25.0% |
| ! | ATGGAACATTAGATTATCTA+AGG | + | chr1.3:67035496-67035515 | MS.gene006039:CDS | 25.0% |
| ! | ATGTAAAAAAATTCACTGGT+AGG | + | chr1.3:67035107-67035126 | MS.gene006039:intron | 25.0% |
| ! | CAAGATGTAAAAAAATTCAC+TGG | + | chr1.3:67035103-67035122 | MS.gene006039:intron | 25.0% |
| ! | GGTTGAAAAAAACTTGAATT+TGG | + | chr1.3:67034049-67034068 | MS.gene006039:intron | 25.0% |
| ! | GTATTTAAAGGATATCTTCA+TGG | + | chr1.3:67034672-67034691 | MS.gene006039:intron | 25.0% |
| ! | GTTACTGTATTATTGAATTG+TGG | + | chr1.3:67033148-67033167 | MS.gene006039:intron | 25.0% |
| ! | TAGCCTAATATCAATATGTA+TGG | - | chr1.3:67034750-67034769 | None:intergenic | 25.0% |
| ! | TAGTACAAAATGTTGTCAAA+TGG | - | chr1.3:67034421-67034440 | None:intergenic | 25.0% |
| ! | TCTCCATATATTCATACTTT+GGG | - | chr1.3:67033186-67033205 | None:intergenic | 25.0% |
| ! | TCTCTACAATATGTTTAGAA+AGG | + | chr1.3:67033100-67033119 | MS.gene006039:intron | 25.0% |
| ! | TGAATTTGGTTATTCTTTGT+TGG | + | chr1.3:67034063-67034082 | MS.gene006039:intron | 25.0% |
| ! | TTAATATGGATGTTTGTGTA+AGG | - | chr1.3:67033245-67033264 | None:intergenic | 25.0% |
| ! | TTACACAAACATCCATATTA+AGG | + | chr1.3:67033244-67033263 | MS.gene006039:intron | 25.0% |
| !! | ATATGTTTAGAAAGGTGTAA+TGG | + | chr1.3:67033108-67033127 | MS.gene006039:intron | 25.0% |
| !! | GGGTTATAATATTGATTGTA+AGG | + | chr1.3:67035689-67035708 | MS.gene006039:CDS | 25.0% |
| !! | TATGTTTAGAAAGGTGTAAT+GGG | + | chr1.3:67033109-67033128 | MS.gene006039:intron | 25.0% |
| !! | TTTTGTACTAAATAGTGCAT+CGG | + | chr1.3:67034431-67034450 | MS.gene006039:intron | 25.0% |
| !!! | ATTGACTTTCTTTTTCAACA+TGG | + | chr1.3:67032677-67032696 | MS.gene006039:intron | 25.0% |
| !!! | TATTTATTTTCTATGGGTTG+TGG | + | chr1.3:67033010-67033029 | MS.gene006039:intron | 25.0% |
| !!! | TGGAAATTTTTTAAGCAACT+TGG | - | chr1.3:67035550-67035569 | None:intergenic | 25.0% |
| !!! | TGTTATTTTTTTGCTAATGC+AGG | + | chr1.3:67032900-67032919 | MS.gene006039:intron | 25.0% |
| !!! | TTGACTTTCTTTTTCAACAT+GGG | + | chr1.3:67032678-67032697 | MS.gene006039:intron | 25.0% |
| !!! | TTTTGGTTTTATCAGTATGT+AGG | + | chr1.3:67032816-67032835 | MS.gene006039:intron | 25.0% |
| !!! | TTTTTGGGAAGAAATTGAAA+AGG | - | chr1.3:67032656-67032675 | None:intergenic | 25.0% |
| AAAAATCTGATATTTGGCGA+TGG | - | chr1.3:67035219-67035238 | None:intergenic | 30.0% | |
| AAATTACATCCAAGAACTTC+TGG | - | chr1.3:67035570-67035589 | None:intergenic | 30.0% | |
| AATGGGACAAAATGAATTGA+AGG | + | chr1.3:67033126-67033145 | MS.gene006039:intron | 30.0% | |
| ACAAAGTCCTAAAAGACATT+GGG | - | chr1.3:67034654-67034673 | None:intergenic | 30.0% | |
| ACTCCCAAAGTATGAATATA+TGG | + | chr1.3:67033180-67033199 | MS.gene006039:intron | 30.0% | |
| AGCTAATATAAAGATCCTGA+AGG | + | chr1.3:67035605-67035624 | MS.gene006039:CDS | 30.0% | |
| AGGATTGTGAATCCTTAATA+TGG | - | chr1.3:67033259-67033278 | None:intergenic | 30.0% | |
| AGTAACGATATACTAGTTGA+TGG | + | chr1.3:67034111-67034130 | MS.gene006039:intron | 30.0% | |
| ATCTTGGCAATAATTGGAAA+TGG | + | chr1.3:67033773-67033792 | MS.gene006039:intron | 30.0% | |
| ATTTGTATGTGTGTAGGAAA+TGG | + | chr1.3:67033036-67033055 | MS.gene006039:intron | 30.0% | |
| CAAAGTATGAATATATGGAG+AGG | + | chr1.3:67033185-67033204 | MS.gene006039:intron | 30.0% | |
| CAAGCATTCAAAATTAACCA+TGG | + | chr1.3:67034563-67034582 | MS.gene006039:intron | 30.0% | |
| CTCTCCATATATTCATACTT+TGG | - | chr1.3:67033187-67033206 | None:intergenic | 30.0% | |
| CTTGGCAAAAATCTGATATT+TGG | - | chr1.3:67035225-67035244 | None:intergenic | 30.0% | |
| GACTTTAAATTCCAGTCTAT+GGG | - | chr1.3:67034632-67034651 | None:intergenic | 30.0% | |
| GTATTGAAGGAAAATCTCTT+AGG | + | chr1.3:67035637-67035656 | MS.gene006039:CDS | 30.0% | |
| TAATCTCAAGTGATGAAGAT+CGG | + | chr1.3:67035322-67035341 | MS.gene006039:CDS | 30.0% | |
| TACAAAATGTTGTCAAATGG+TGG | - | chr1.3:67034418-67034437 | None:intergenic | 30.0% | |
| TACAAAGTCCTAAAAGACAT+TGG | - | chr1.3:67034655-67034674 | None:intergenic | 30.0% | |
| TGAAGTTAGGATAATGATGT+AGG | + | chr1.3:67033492-67033511 | MS.gene006039:intron | 30.0% | |
| TTCCAATTATTGCCAAGATT+GGG | - | chr1.3:67033772-67033791 | None:intergenic | 30.0% | |
| TTTCCAATTATTGCCAAGAT+TGG | - | chr1.3:67033773-67033792 | None:intergenic | 30.0% | |
| TTTGTACTAAATAGTGCATC+GGG | + | chr1.3:67034432-67034451 | MS.gene006039:intron | 30.0% | |
| ! | AAGATTTTTGAATTCTGCTG+TGG | + | chr1.3:67034950-67034969 | MS.gene006039:intron | 30.0% |
| ! | ACCTTTAATTTCACAAGACA+GGG | - | chr1.3:67033912-67033931 | None:intergenic | 30.0% |
| ! | ATATTTAACTTCCCATAGAC+TGG | + | chr1.3:67034618-67034637 | MS.gene006039:intron | 30.0% |
| ! | CAATTGTTGATGAAAAGCAT+TGG | - | chr1.3:67034137-67034156 | None:intergenic | 30.0% |
| ! | CTAAAACTGGATTCTTTTCA+AGG | - | chr1.3:67034787-67034806 | None:intergenic | 30.0% |
| ! | CTTCGAAATCCAAAAGTTTT+GGG | + | chr1.3:67035669-67035688 | MS.gene006039:CDS | 30.0% |
| ! | TCATGGTTTCATACTTTTGT+TGG | + | chr1.3:67034689-67034708 | MS.gene006039:intron | 30.0% |
| ! | TTAAAGTCCCAATGTCTTTT+AGG | + | chr1.3:67034644-67034663 | MS.gene006039:intron | 30.0% |
| !! | AAGATACTTGGAAAAGCATT+TGG | + | chr1.3:67035408-67035427 | MS.gene006039:CDS | 30.0% |
| !! | ATTCTTCTAGAATGCTTTGT+TGG | + | chr1.3:67033382-67033401 | MS.gene006039:intron | 30.0% |
| !! | TTAAAGAGGAAGGTATTGTA+AGG | - | chr1.3:67033443-67033462 | None:intergenic | 30.0% |
| !!! | AAAGAATCCAGTTTTAGTTC+TGG | + | chr1.3:67034790-67034809 | MS.gene006039:intron | 30.0% |
| !!! | TTTTTTTGCTAATGCAGGTA+TGG | + | chr1.3:67032905-67032924 | MS.gene006039:intron | 30.0% |
| AATCCAATAAGCTGGTTGAA+TGG | + | chr1.3:67034221-67034240 | MS.gene006039:intron | 35.0% | |
| AATGTTCCAATTTCCAACTC+TGG | - | chr1.3:67035080-67035099 | None:intergenic | 35.0% | |
| AATTATTGCCAAGATTGGGA+TGG | - | chr1.3:67033768-67033787 | None:intergenic | 35.0% | |
| ACTTATGCATACAGATCCAA+AGG | + | chr1.3:67035054-67035073 | MS.gene006039:intron | 35.0% | |
| AGCTGGGATATGTAAAAAAC+TGG | + | chr1.3:67033701-67033720 | MS.gene006039:intron | 35.0% | |
| ATCCCAATCTTGGCAATAAT+TGG | + | chr1.3:67033767-67033786 | MS.gene006039:intron | 35.0% | |
| CAAATCATTCTACCAACCAT+TGG | + | chr1.3:67035268-67035287 | MS.gene006039:CDS | 35.0% | |
| CCATTTACTGCCTCAAATTT+GGG | - | chr1.3:67035480-67035499 | None:intergenic | 35.0% | |
| GAAGAAAAGGACAAGATACT+TGG | + | chr1.3:67035396-67035415 | MS.gene006039:CDS | 35.0% | |
| GCTGGGATATGTAAAAAACT+GGG | + | chr1.3:67033702-67033721 | MS.gene006039:intron | 35.0% | |
| GGACTTTAAATTCCAGTCTA+TGG | - | chr1.3:67034633-67034652 | None:intergenic | 35.0% | |
| GTATGTAGGTTCTTCATGTT+TGG | + | chr1.3:67032830-67032849 | MS.gene006039:intron | 35.0% | |
| TAACTTCGACGATGAAGAAA+AGG | + | chr1.3:67035383-67035402 | MS.gene006039:CDS | 35.0% | |
| TACTACATCCATAGCCAAAA+TGG | - | chr1.3:67034176-67034195 | None:intergenic | 35.0% | |
| TCCATTTACTGCCTCAAATT+TGG | - | chr1.3:67035481-67035500 | None:intergenic | 35.0% | |
| TCCCTGTCTTGTGAAATTAA+AGG | + | chr1.3:67033908-67033927 | MS.gene006039:intron | 35.0% | |
| TCTCTTAAACAGTTTCAGCT+GGG | + | chr1.3:67033685-67033704 | MS.gene006039:intron | 35.0% | |
| TCTTCAGCATACCTAGATAT+AGG | + | chr1.3:67034882-67034901 | MS.gene006039:intron | 35.0% | |
| TGATTGTAAGGGAGATTGTA+AGG | + | chr1.3:67035701-67035720 | MS.gene006039:CDS | 35.0% | |
| TTATCCTAACTTCAACCTTG+AGG | - | chr1.3:67033486-67033505 | None:intergenic | 35.0% | |
| TTGTACTAAATAGTGCATCG+GGG | + | chr1.3:67034433-67034452 | MS.gene006039:intron | 35.0% | |
| ! | AAGCATTCTAGAAGAATCGA+TGG | - | chr1.3:67033379-67033398 | None:intergenic | 35.0% |
| ! | AGCATTCTAGAAGAATCGAT+GGG | - | chr1.3:67033378-67033397 | None:intergenic | 35.0% |
| ! | ATTAAGACTAGTCATCTCAC+AGG | + | chr1.3:67033285-67033304 | MS.gene006039:intron | 35.0% |
| ! | CCAAAACTTTTGGATTTCGA+AGG | - | chr1.3:67035671-67035690 | None:intergenic | 35.0% |
| ! | CCTTCGAAATCCAAAAGTTT+TGG | + | chr1.3:67035668-67035687 | MS.gene006039:CDS | 35.0% |
| ! | GACCTTTAATTTCACAAGAC+AGG | - | chr1.3:67033913-67033932 | None:intergenic | 35.0% |
| ! | GTTTTACGGTGACTATCATA+TGG | + | chr1.3:67034480-67034499 | MS.gene006039:intron | 35.0% |
| !! | AAGGTCGATTTTAAAGAGGA+AGG | - | chr1.3:67033453-67033472 | None:intergenic | 35.0% |
| !! | ATGGTTGGTAGAATGATTTG+AGG | - | chr1.3:67035268-67035287 | None:intergenic | 35.0% |
| !! | CGTACACAATTTTTAGACTC+TGG | - | chr1.3:67035157-67035176 | None:intergenic | 35.0% |
| !! | CTCCATTCTGATTCGTTTTA+CGG | + | chr1.3:67034466-67034485 | MS.gene006039:intron | 35.0% |
| !! | GGTTATCTTTCTTTGGAGTT+AGG | + | chr1.3:67034302-67034321 | MS.gene006039:intron | 35.0% |
| !! | TGACTAGTCTTAATAGAGTG+AGG | - | chr1.3:67033279-67033298 | None:intergenic | 35.0% |
| !! | TTAGAGGGTTGACTTTGTTT+TGG | + | chr1.3:67032799-67032818 | MS.gene006039:intron | 35.0% |
| !! | TTATTTTCTATGGGTTGTGG+TGG | + | chr1.3:67033013-67033032 | MS.gene006039:intron | 35.0% |
| !!! | AGCTTTTAGAATAAGGGAAG+AGG | + | chr1.3:67033212-67033231 | MS.gene006039:intron | 35.0% |
| !!! | AGGAGAGAGCTTTTAGAATA+AGG | + | chr1.3:67033205-67033224 | MS.gene006039:intron | 35.0% |
| !!! | GGAGAGAGCTTTTAGAATAA+GGG | + | chr1.3:67033206-67033225 | MS.gene006039:intron | 35.0% |
| AAAATTGTGTACGATCGTGC+AGG | + | chr1.3:67035164-67035183 | MS.gene006039:intron | 40.0% | |
| AAATTCACTGGTAGGACTGT+AGG | + | chr1.3:67035115-67035134 | MS.gene006039:intron | 40.0% | |
| ACAGTAAGCTCTTGTTCAGT+GGG | - | chr1.3:67033564-67033583 | None:intergenic | 40.0% | |
| ACTGTCCTTGAATGATCTCA+CGG | + | chr1.3:67033579-67033598 | MS.gene006039:intron | 40.0% | |
| AGAACGCAATATCCAATGGT+TGG | - | chr1.3:67035283-67035302 | None:intergenic | 40.0% | |
| ATACTAGCATAGTCCTCACA+GGG | + | chr1.3:67033515-67033534 | MS.gene006039:intron | 40.0% | |
| ATCTGTGATTGACAATGCTG+AGG | - | chr1.3:67034329-67034348 | None:intergenic | 40.0% | |
| CAACCATTCAACCAGCTTAT+TGG | - | chr1.3:67034227-67034246 | None:intergenic | 40.0% | |
| CAAGTCTTGCAAAAGCAAAG+TGG | + | chr1.3:67035241-67035260 | MS.gene006039:CDS | 40.0% | |
| CAATAAGCTGGTTGAATGGT+TGG | + | chr1.3:67034225-67034244 | MS.gene006039:intron | 40.0% | |
| CACCGTAAAACGAATCAGAA+TGG | - | chr1.3:67034471-67034490 | None:intergenic | 40.0% | |
| CAGTGCTATAACATCGCTAT+AGG | + | chr1.3:67034387-67034406 | MS.gene006039:intron | 40.0% | |
| CCTATGACAACCAGTGAATT+AGG | - | chr1.3:67033638-67033657 | None:intergenic | 40.0% | |
| CCTTGTTCATTCTCCTTACT+GGG | + | chr1.3:67035431-67035450 | MS.gene006039:CDS | 40.0% | |
| CGTAATAGGACCTAATTCAC+TGG | + | chr1.3:67033625-67033644 | MS.gene006039:intron | 40.0% | |
| CTCACTAAGTGAAAACTGGA+GGG | + | chr1.3:67034086-67034105 | MS.gene006039:intron | 40.0% | |
| CTTGTTCATTCTCCTTACTG+GGG | + | chr1.3:67035432-67035451 | MS.gene006039:CDS | 40.0% | |
| GAAGGAAGTTCCCAAATTTG+AGG | + | chr1.3:67035467-67035486 | MS.gene006039:CDS | 40.0% | |
| GATATTTGGCGATGGAATAC+TGG | - | chr1.3:67035211-67035230 | None:intergenic | 40.0% | |
| GGACTGTAGGAGGATAATAA+TGG | + | chr1.3:67035128-67035147 | MS.gene006039:intron | 40.0% | |
| GTATTCTACCATCCCAATCT+TGG | + | chr1.3:67033757-67033776 | MS.gene006039:intron | 40.0% | |
| GTCTCTTAAACAGTTTCAGC+TGG | + | chr1.3:67033684-67033703 | MS.gene006039:intron | 40.0% | |
| GTGACTATCATATGGAGAGT+GGG | + | chr1.3:67034488-67034507 | MS.gene006039:intron | 40.0% | |
| GTTTCAATGCAAAGTCTCCA+TGG | - | chr1.3:67034583-67034602 | None:intergenic | 40.0% | |
| TCAACCTCCAGAACTAAAAC+TGG | - | chr1.3:67034800-67034819 | None:intergenic | 40.0% | |
| TCGTAGAACGCAATATCCAA+TGG | - | chr1.3:67035287-67035306 | None:intergenic | 40.0% | |
| TCTCTTTCCTTTGTCATAGC+TGG | + | chr1.3:67033411-67033430 | MS.gene006039:intron | 40.0% | |
| TGATGAAGATCGGAGTATGT+GGG | + | chr1.3:67035332-67035351 | MS.gene006039:CDS | 40.0% | |
| TTGCTAATGCAGGTATGGTT+AGG | + | chr1.3:67032910-67032929 | MS.gene006039:intron | 40.0% | |
| TTGCTCACAATCCAATAAGC+TGG | + | chr1.3:67034213-67034232 | MS.gene006039:intron | 40.0% | |
| TTGGCTCACTAAGTGAAAAC+TGG | + | chr1.3:67034082-67034101 | MS.gene006039:intron | 40.0% | |
| TTGTCCTCAAGGTTGAAGTT+AGG | + | chr1.3:67033479-67033498 | MS.gene006039:intron | 40.0% | |
| ! | AAGGGCTTCTCTTTTTCTGT+TGG | + | chr1.3:67033991-67034010 | MS.gene006039:intron | 40.0% |
| ! | CAGGGATGCTTTATTGAATC+AGG | - | chr1.3:67033894-67033913 | None:intergenic | 40.0% |
| ! | CCCAAATTTGAGGCAGTAAA+TGG | + | chr1.3:67035477-67035496 | MS.gene006039:CDS | 40.0% |
| ! | CCTAATTCACTGGTTGTCAT+AGG | + | chr1.3:67033635-67033654 | MS.gene006039:intron | 40.0% |
| ! | CTTTTGGATTTCGAAGGAGA+AGG | - | chr1.3:67035665-67035684 | None:intergenic | 40.0% |
| ! | GCATTCTAGAAGAATCGATG+GGG | - | chr1.3:67033377-67033396 | None:intergenic | 40.0% |
| ! | TTGTCTGAGACTCTCTTAGA+GGG | + | chr1.3:67032784-67032803 | MS.gene006039:intron | 40.0% |
| ! | TTTGTCTGAGACTCTCTTAG+AGG | + | chr1.3:67032783-67032802 | MS.gene006039:intron | 40.0% |
| !! | CACTTTGCTTTTGCAAGACT+TGG | - | chr1.3:67035243-67035262 | None:intergenic | 40.0% |
| !! | GGACAAGGTCGATTTTAAAG+AGG | - | chr1.3:67033457-67033476 | None:intergenic | 40.0% |
| !! | TGGTGGATTTGTATGTGTGT+AGG | + | chr1.3:67033030-67033049 | MS.gene006039:intron | 40.0% |
| !!! | AGAAGTTGCCATTTTGGCTA+TGG | + | chr1.3:67034165-67034184 | MS.gene006039:intron | 40.0% |
| !!! | GAATCCAGTTTTAGTTCTGG+AGG | + | chr1.3:67034793-67034812 | MS.gene006039:intron | 40.0% |
| AAGACAGGATGTACAACTGC+AGG | - | chr1.3:67033828-67033847 | None:intergenic | 45.0% | |
| ACTTCAACCTTGAGGACAAC+TGG | - | chr1.3:67033478-67033497 | None:intergenic | 45.0% | |
| AGCACAGTTCTTGTGTTGCA+AGG | + | chr1.3:67032971-67032990 | MS.gene006039:CDS | 45.0% | |
| AGTGCAACTAGTAATGCTGC+AGG | + | chr1.3:67034021-67034040 | MS.gene006039:intron | 45.0% | |
| CAAAGGCCAGAGTTGGAAAT+TGG | + | chr1.3:67035071-67035090 | MS.gene006039:intron | 45.0% | |
| CAAGAACTGTGCTGCAGAAT+CGG | - | chr1.3:67032964-67032983 | None:intergenic | 45.0% | |
| CCCAGTAAGGAGAATGAACA+AGG | - | chr1.3:67035434-67035453 | None:intergenic | 45.0% | |
| CTGTCCTTGAATGATCTCAC+GGG | + | chr1.3:67033580-67033599 | MS.gene006039:intron | 45.0% | |
| CTTGTTCAGTGGGAACACTT+GGG | - | chr1.3:67033554-67033573 | None:intergenic | 45.0% | |
| GAAGCTTCCAGCTATGACAA+AGG | - | chr1.3:67033421-67033440 | None:intergenic | 45.0% | |
| GACAGTAAGCTCTTGTTCAG+TGG | - | chr1.3:67033565-67033584 | None:intergenic | 45.0% | |
| GATACTAGCATAGTCCTCAC+AGG | + | chr1.3:67033514-67033533 | MS.gene006039:intron | 45.0% | |
| GCTCACTAAGTGAAAACTGG+AGG | + | chr1.3:67034085-67034104 | MS.gene006039:intron | 45.0% | |
| GGTGACTATCATATGGAGAG+TGG | + | chr1.3:67034487-67034506 | MS.gene006039:intron | 45.0% | |
| GGTTGGCGTTATAGTGTTCT+TGG | + | chr1.3:67034242-67034261 | MS.gene006039:intron | 45.0% | |
| GTCATCTCACAGGATCTTTC+AGG | + | chr1.3:67033295-67033314 | MS.gene006039:intron | 45.0% | |
| GTGATGAAGATCGGAGTATG+TGG | + | chr1.3:67035331-67035350 | MS.gene006039:CDS | 45.0% | |
| TAAAGATCCTGAAGGAGCAG+TGG | + | chr1.3:67035613-67035632 | MS.gene006039:CDS | 45.0% | |
| TCTTGTTCAGTGGGAACACT+TGG | - | chr1.3:67033555-67033574 | None:intergenic | 45.0% | |
| TGTTGAAAATGCCTCGTAGG+AGG | - | chr1.3:67034545-67034564 | None:intergenic | 45.0% | |
| TTCTTTCCTCTGCAAGATGC+TGG | + | chr1.3:67033729-67033748 | MS.gene006039:intron | 45.0% | |
| TTGAGCCTTCATGACCTGTT+GGG | + | chr1.3:67033847-67033866 | MS.gene006039:intron | 45.0% | |
| TTGTTCAGTGGGAACACTTG+GGG | - | chr1.3:67033553-67033572 | None:intergenic | 45.0% | |
| TTTGAGCCTTCATGACCTGT+TGG | + | chr1.3:67033846-67033865 | MS.gene006039:intron | 45.0% | |
| ! | ACTGCTACTGGTTGCGTAAT+AGG | + | chr1.3:67033611-67033630 | MS.gene006039:intron | 45.0% |
| ! | CAATTTCCAACTCTGGCCTT+TGG | - | chr1.3:67035073-67035092 | None:intergenic | 45.0% |
| ! | GCCTTGTTCATTCTCCTTAC+TGG | + | chr1.3:67035430-67035449 | MS.gene006039:CDS | 45.0% |
| ! | GCTTGTTGAAAATGCCTCGT+AGG | - | chr1.3:67034548-67034567 | None:intergenic | 45.0% |
| ! | GGCTTCTCTTTTTCTGTTGG+CGG | + | chr1.3:67033994-67034013 | MS.gene006039:intron | 45.0% |
| ! | TCACTGGTTGTCATAGGAAG+AGG | + | chr1.3:67033641-67033660 | MS.gene006039:intron | 45.0% |
| ! | TTCTAGAAGAATCGATGGGG+AGG | - | chr1.3:67033374-67033393 | None:intergenic | 45.0% |
| ! | TTTTTACAGCTCCTCCTACG+AGG | + | chr1.3:67034531-67034550 | MS.gene006039:intron | 45.0% |
| !! | AAGGAGCAGTGGAGTATTGA+AGG | + | chr1.3:67035624-67035643 | MS.gene006039:CDS | 45.0% |
| !! | ACAACTGCAGGTTGGTGATA+AGG | - | chr1.3:67033816-67033835 | None:intergenic | 45.0% |
| !! | GAGTGCAGAAGTTGCCATTT+TGG | + | chr1.3:67034159-67034178 | MS.gene006039:intron | 45.0% |
| AACTAACCAGAGCGACGAGA+AGG | - | chr1.3:67032625-67032644 | None:intergenic | 50.0% | |
| ACAGATCCAAAGGCCAGAGT+TGG | + | chr1.3:67035064-67035083 | MS.gene006039:intron | 50.0% | |
| ACCTTGAGGACAACTGGACA+AGG | - | chr1.3:67033472-67033491 | None:intergenic | 50.0% | |
| ACCTTGTCCAGTTGTCCTCA+AGG | + | chr1.3:67033468-67033487 | MS.gene006039:intron | 50.0% | |
| AGAATCCAGGAAGTAGGGAG+AGG | - | chr1.3:67033348-67033367 | None:intergenic | 50.0% | |
| AGAATCGGTAGCGAGAAGAG+GGG | - | chr1.3:67032949-67032968 | None:intergenic | 50.0% | |
| AGGAAGTAGGGAGAGGAATG+CGG | - | chr1.3:67033341-67033360 | None:intergenic | 50.0% | |
| AGGCACAATGCACTAGATGC+TGG | + | chr1.3:67035721-67035740 | MS.gene006039:CDS | 50.0% | |
| CAATACTCCACTGCTCCTTC+AGG | - | chr1.3:67035623-67035642 | None:intergenic | 50.0% | |
| CAGAATCGGTAGCGAGAAGA+GGG | - | chr1.3:67032950-67032969 | None:intergenic | 50.0% | |
| CAGACCCGTGAGATCATTCA+AGG | - | chr1.3:67033587-67033606 | None:intergenic | 50.0% | |
| CAGGATGTACAACTGCAGGT+TGG | - | chr1.3:67033824-67033843 | None:intergenic | 50.0% | |
| CGGGTCTGTAAAACTGCTAC+TGG | + | chr1.3:67033599-67033618 | MS.gene006039:intron | 50.0% | |
| CTAGTAATGCTGCAGGCGAA+TGG | + | chr1.3:67034028-67034047 | MS.gene006039:intron | 50.0% | |
| CTCCCTACTTCCTGGATTCT+CGG | + | chr1.3:67033348-67033367 | MS.gene006039:intron | 50.0% | |
| GGAGACTAAAGTTCCCTGTG+AGG | - | chr1.3:67033531-67033550 | None:intergenic | 50.0% | |
| GGCACAATGCACTAGATGCT+GGG | + | chr1.3:67035722-67035741 | MS.gene006039:CDS | 50.0% | |
| GGTCATGAAGGCTCAAAGAC+AGG | - | chr1.3:67033843-67033862 | None:intergenic | 50.0% | |
| TCACGATCTTCTCCCCAGTA+AGG | - | chr1.3:67035447-67035466 | None:intergenic | 50.0% | |
| TGGCGATGGAATACTGGAAG+AGG | - | chr1.3:67035205-67035224 | None:intergenic | 50.0% | |
| TGTTCAGTGGGAACACTTGG+GGG | - | chr1.3:67033552-67033571 | None:intergenic | 50.0% | |
| TTCACTGGTAGGACTGTAGG+AGG | + | chr1.3:67035118-67035137 | MS.gene006039:intron | 50.0% | |
| AGGCCGAGAATCCAGGAAGT+AGG | - | chr1.3:67033354-67033373 | None:intergenic | 55.0% | |
| ATCGTGCAGGCTGATCTTGC+TGG | + | chr1.3:67035177-67035196 | MS.gene006039:intron | 55.0% | |
| CAAGCTCCAGCATCTTGCAG+AGG | - | chr1.3:67033738-67033757 | None:intergenic | 55.0% | |
| CCTTCATGACCTGTTGGGTG+CGG | + | chr1.3:67033852-67033871 | MS.gene006039:intron | 55.0% | |
| CTGGGGAGAAGATCGTGAGA+AGG | + | chr1.3:67035449-67035468 | MS.gene006039:CDS | 55.0% | |
| CTTCATGACCTGTTGGGTGC+GGG | + | chr1.3:67033853-67033872 | MS.gene006039:intron | 55.0% | |
| GCAGAATCGGTAGCGAGAAG+AGG | - | chr1.3:67032951-67032970 | None:intergenic | 55.0% | |
| GCATTCCTCTCCCTACTTCC+TGG | + | chr1.3:67033340-67033359 | MS.gene006039:intron | 55.0% | |
| GGCCGAGAATCCAGGAAGTA+GGG | - | chr1.3:67033353-67033372 | None:intergenic | 55.0% | |
| TAACTTGACCCGCACCCAAC+AGG | - | chr1.3:67033864-67033883 | None:intergenic | 55.0% | |
| TAGGGAGAGGAATGCGGCAA+CGG | - | chr1.3:67033335-67033354 | None:intergenic | 55.0% | |
| CCAGAGCGACGAGAAGGTGA+AGG | - | chr1.3:67032619-67032638 | None:intergenic | 60.0% | |
| CCGCACCCAACAGGTCATGA+AGG | - | chr1.3:67033855-67033874 | None:intergenic | 60.0% | |
| CCTTCACCTTCTCGTCGCTC+TGG | + | chr1.3:67032616-67032635 | MS.gene006039:CDS | 60.0% | |
| GATGGGGAGGCCGAGAATCC+AGG | - | chr1.3:67033361-67033380 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67032592 | 67035755 | 67032592 | ID=MS.gene006039 |
| chr1.3 | mRNA | 67032592 | 67035755 | 67032592 | ID=MS.gene006039.t1;Parent=MS.gene006039 |
| chr1.3 | exon | 67032592 | 67032637 | 67032592 | ID=MS.gene006039.t1.exon1;Parent=MS.gene006039.t1 |
| chr1.3 | CDS | 67032592 | 67032637 | 67032592 | ID=cds.MS.gene006039.t1;Parent=MS.gene006039.t1 |
| chr1.3 | exon | 67032922 | 67032992 | 67032922 | ID=MS.gene006039.t1.exon2;Parent=MS.gene006039.t1 |
| chr1.3 | CDS | 67032922 | 67032992 | 67032922 | ID=cds.MS.gene006039.t1;Parent=MS.gene006039.t1 |
| chr1.3 | exon | 67035186 | 67035755 | 67035186 | ID=MS.gene006039.t1.exon3;Parent=MS.gene006039.t1 |
| chr1.3 | CDS | 67035186 | 67035755 | 67035186 | ID=cds.MS.gene006039.t1;Parent=MS.gene006039.t1 |
| Gene Sequence |
| Protein sequence |
