AlfalfaGEDB | MS.gene00607

M. sativa cultivar XinJiangDaYe / MS.gene00607

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00607.t1	XP_024639282.1	93.3	134	9	0	1	134	1	134	3.50E-63	251.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00607.t1	Q9SZL8	40.2	82	46	1	56	134	73	154	1.5e-09	64.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00607.t1	G7K2I4	93.3	134	9	0	1	134	1	134	2.5e-63	251.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00607.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00607.t1	MTR_5g015480	76.419	229	33	2	1	208	1	229	4.51e-122	347
MS.gene00607.t1	MTR_6g017200	68.932	103	28	1	36	134	34	136	6.14e-43	142
MS.gene00607.t1	MTR_1g057920	60.714	112	40	1	27	134	1	112	8.43e-40	133
MS.gene00607.t1	MTR_2g070590	67.368	95	31	0	40	134	1	95	4.08e-39	131
MS.gene00607.t1	MTR_0402s0040	66.990	103	30	1	36	134	2	104	1.09e-38	139
MS.gene00607.t1	MTR_0137s0040	67.045	88	25	1	25	108	1	88	6.75e-37	125
MS.gene00607.t1	MTR_0291s0060	63.014	73	23	1	38	106	13	85	1.06e-24	93.6
MS.gene00607.t1	MTR_7g113010	46.903	113	42	2	26	134	423	521	5.05e-21	90.9
MS.gene00607.t1	MTR_4g067290	40.164	122	61	3	56	166	56	176	1.73e-19	83.6
MS.gene00607.t1	MTR_1g091013	67.857	56	18	0	69	124	14	69	1.98e-19	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00607.t1	AT3G59470	40.650	123	60	5	56	166	70	191	1.33e-15	73.6
MS.gene00607.t1	AT3G59470	40.650	123	60	5	56	166	70	191	1.33e-15	73.6
MS.gene00607.t1	AT3G59470	40.650	123	60	5	56	166	82	203	1.52e-15	73.6

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Find 47 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTACCGGTGCCCAG+AGG	0.742952	2.1:-75884956	None:intergenic
AAAATTTGTGTGCTCCAAAG+AGG	0.589431	2.1:+75885343	MS.gene00607:CDS
AAATTTGTGTGCTCCAAAGA+GGG	0.614397	2.1:+75885344	MS.gene00607:CDS
AACAGGATGTTTAGCACGTA+TGG	0.468473	2.1:+75885424	MS.gene00607:CDS
AATGAGTATAGTAGGAAATG+TGG	0.549866	2.1:+75885260	MS.gene00607:CDS
AATGGAAGCCAATCTGGATA+TGG	0.437868	2.1:+75885989	MS.gene00607:CDS
ACATCCAATCCAATGGTTGA+AGG	0.531051	2.1:+75885125	MS.gene00607:CDS
ACGTGATTACTTAACAAAAG+AGG	0.543276	2.1:+75885385	MS.gene00607:CDS
ACGTGTGTCGTTTCTACCAT+TGG	0.448381	2.1:-75884899	None:intergenic
ATATGGAAGCCATGCTTTGA+TGG	0.436030	2.1:+75886006	MS.gene00607:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGTATAGTAGGAAATG+TGG	+	chr2.1:75885260-75885279	MS.gene00607:CDS	30.0%
ACGTGATTACTTAACAAAAG+AGG	+	chr2.1:75885385-75885404	MS.gene00607:CDS	30.0%
GAATATTACATCCAATCCAA+TGG	+	chr2.1:75885118-75885137	MS.gene00607:CDS	30.0%
GACAAAGAACAAAATCTTAC+CGG	-	chr2.1:75884969-75884988	None:intergenic	30.0%
GATAGCAGTACTAAAATTCT+AGG	-	chr2.1:75885669-75885688	None:intergenic	30.0%
GCTTAGATAGGACTAAAAAA+AGG	+	chr2.1:75885535-75885554	MS.gene00607:intron	30.0%
TCCAAATGTCAAATGAGATT+AGG	+	chr2.1:75886104-75886123	MS.gene00607:CDS	30.0%
TCCTAATCTCATTTGACATT+TGG	-	chr2.1:75886108-75886127	None:intergenic	30.0%
TGAAAAAAAGGATCAGAATG+TGG	+	chr2.1:75885467-75885486	MS.gene00607:intron	30.0%
AAAATTTGTGTGCTCCAAAG+AGG	+	chr2.1:75885343-75885362	MS.gene00607:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	75884902	75886132	75884902	ID=MS.gene00607
chr2.1	mRNA	75884902	75886132	75884902	ID=MS.gene00607.t1;Parent=MS.gene00607
chr2.1	exon	75884902	75884968	75884902	ID=MS.gene00607.t1.exon1;Parent=MS.gene00607.t1
chr2.1	CDS	75884902	75884968	75884902	ID=cds.MS.gene00607.t1;Parent=MS.gene00607.t1
chr2.1	exon	75885111	75885445	75885111	ID=MS.gene00607.t1.exon2;Parent=MS.gene00607.t1
chr2.1	CDS	75885111	75885445	75885111	ID=cds.MS.gene00607.t1;Parent=MS.gene00607.t1
chr2.1	exon	75885727	75885792	75885727	ID=MS.gene00607.t1.exon3;Parent=MS.gene00607.t1
chr2.1	CDS	75885727	75885792	75885727	ID=cds.MS.gene00607.t1;Parent=MS.gene00607.t1
chr2.1	exon	75885950	75886132	75885950	ID=MS.gene00607.t1.exon4;Parent=MS.gene00607.t1
chr2.1	CDS	75885950	75886132	75885950	ID=cds.MS.gene00607.t1;Parent=MS.gene00607.t1

Gene Sequence

>MS.gene00607

ATGGTAGAAACGACACACGTAGAACATGATGCAAATCTTCACCATTCATCACCACCTCTGGGCACCGGTAAGATTTTGTTCTTTGTCGATGAATATACACACGTAGAACATGAATATTTGAAAGTATTTGGACAATATAAAATTAATATAAAATGTCTATGAATATTAACATGTTGACTTTATATTTTTTTTTTCTTTCCATTTTCTAGATAATGTGAATATTACATCCAATCCAATGGTTGAAGGTGTAGAAAAATTGGTGAATGATATCGTGCAACAGGGAAAAGAGAGTACTGTTAGTAATGTACCACACTTGGAAATGGACTTTGAGTCTGAGGCCTTGGCATATGAATTTTATAATGAGTATAGTAGGAAATGTGGTTTTGGTATCCGTCGAGAATATGCAAATAAAAGCAAAAAAGATGGAGTTCTTACTTCAAGAAAATTTGTGTGCTCCAAAGAGGGTAGACGCGGTGTCGACAAACGTGATTACTTAACAAAAGAGGCTCGAGCAGAAACTAGAACAGGATGTTTAGCACGTATGGTTATTTCACTTGATTGGAAATGAAAAAAAGGATCAGAATGTGGACACTGTTGATCTTGGTGGGGCAAAAGCAATAAAGAGCCGAGATTGCTTAGATAGGACTAAAAAAAGGTATCCAACTTGGCTTGAGAAATTGGATAAAAAGAGACAAAAAAGGCTATCACAGACTAAGAGAAAGAAAAAATTGGTAAACAACTCTTTACTTTCTTTTTAACATGTGCCTAGAATTTTAGTACTGCTATCACATATACATAATACATGTTACTTTTACTACTATGTAGGAACAATCTCCTGCAAACAATGATGGTACACATGCTTTGAATGGAAGGAAGAGAAAGAAAAAATTGGTAAAAATATCCATACTTTCTTTTTAACATGTGACAGAATTTCAGTACTGCTATCACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATACATGTTACTTCTACTATTATGTAGGAACAATCTCCAGCAACCCATGATGGCATACATGCTTGGAATGGAAGCCAATCTGGATATGGAAGCCATGCTTTGATGGCATCTCAAACTGAGAATGCAAGTCGACATTTACCTTTAACAGAAGCTGACAATGGAAGTCTACATGAGATTAGGATCCAAATGTCAAATGAGATTAGGATCTAA

Protein sequence

>MS.gene00607.t1

MVETTHVEHDANLHHSSPPLGTDNVNITSNPMVEGVEKLVNDIVQQGKESTVSNVPHLEMDFESEALAYEFYNEYSRKCGFGIRREYANKSKKDGVLTSRKFVCSKEGRRGVDKRDYLTKEARAETRTGCLARMEQSPANNDGTHALNGRKRKKKLEQSPATHDGIHAWNGSQSGYGSHALMASQTENASRHLPLTEADNGSLHEIRIQMSNEIRI