AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006070.t1 MTR_3g045700 50.877 171 34 2 209 329 180 350 1.92e-44 155
MS.gene006070.t1 MTR_1g109340 49.412 170 36 1 209 328 185 354 1.01e-42 151
MS.gene006070.t1 MTR_1g109340 52.137 117 36 3 90 206 2 98 3.10e-26 107
MS.gene006070.t1 MTR_7g083950 48.538 171 38 1 209 329 262 432 8.69e-41 147
MS.gene006070.t1 MTR_7g083950 43.651 126 52 5 101 220 16 128 6.76e-17 81.3
MS.gene006070.t1 MTR_1g100280 44.886 176 45 2 206 329 162 337 1.54e-38 139
MS.gene006070.t1 MTR_1g109520 46.203 158 31 2 225 328 19 176 7.88e-33 120
MS.gene006070.t1 MTR_4g133320 42.197 173 46 3 205 326 136 305 7.22e-30 116
MS.gene006070.t1 MTR_3g006120 42.690 171 48 3 209 329 182 352 8.73e-29 114
MS.gene006070.t1 MTR_4g133490 40.805 174 53 3 205 329 176 348 1.48e-28 113
MS.gene006070.t1 MTR_1g089620 43.787 169 37 4 178 298 2 160 3.32e-28 111
MS.gene006070.t1 MTR_3g006010 40.230 174 54 2 206 329 296 469 4.56e-28 114
MS.gene006070.t1 MTR_3g006010 35.032 157 68 5 92 216 4 158 2.44e-16 79.7
MS.gene006070.t1 MTR_3g006100 41.071 168 49 3 209 326 182 349 1.47e-27 110
MS.gene006070.t1 MTR_3g006180 41.176 170 50 3 209 328 169 338 2.21e-26 107
MS.gene006070.t1 MTR_1g109550 47.059 136 60 4 15 143 12 142 3.17e-26 102
MS.gene006070.t1 MTR_3g006185 42.135 178 77 6 12 168 2 174 1.31e-25 101
MS.gene006070.t1 MTR_3g086480 35.455 220 78 8 163 321 37 253 2.24e-25 102
MS.gene006070.t1 MTR_4g133470 43.114 167 70 6 17 166 87 245 4.10e-25 102
MS.gene006070.t1 MTR_4g133470 40.000 115 59 2 63 167 49 163 5.94e-17 79.3
MS.gene006070.t1 MTR_3g068220 39.773 176 48 4 209 326 179 354 5.57e-25 103
MS.gene006070.t1 MTR_4g133300 42.331 163 77 4 17 166 87 245 1.14e-24 100
MS.gene006070.t1 MTR_4g133300 40.000 115 59 2 63 167 49 163 5.76e-18 82.4
MS.gene006070.t1 MTR_3g006140 39.286 168 50 4 209 325 204 370 3.24e-24 102
MS.gene006070.t1 MTR_7g070100 38.596 171 54 3 209 329 181 350 2.28e-23 99.0
MS.gene006070.t1 MTR_6g088340 37.222 180 54 4 209 329 254 433 3.35e-23 99.8
MS.gene006070.t1 MTR_3g006125 41.899 179 77 7 12 168 83 256 4.43e-23 96.7
MS.gene006070.t1 MTR_6g092140 42.537 134 62 3 101 220 11 143 1.09e-22 98.6
MS.gene006070.t1 MTR_6g092140 34.444 180 59 3 209 329 276 455 3.04e-20 91.3
MS.gene006070.t1 MTR_6g091830 42.537 134 62 3 101 220 11 143 1.13e-22 98.6
MS.gene006070.t1 MTR_6g091830 36.111 180 56 5 209 329 276 455 6.50e-20 90.5
MS.gene006070.t1 MTR_6g011110 35.359 181 56 4 209 329 98 277 2.45e-22 95.1
MS.gene006070.t1 MTR_1g105955 42.636 129 52 4 55 161 35 163 5.17e-22 91.7
MS.gene006070.t1 MTR_1g105955 43.590 78 37 2 99 171 17 92 3.66e-12 64.7
MS.gene006070.t1 MTR_1g104960 37.500 168 85 4 18 169 12 175 3.49e-21 89.4
MS.gene006070.t1 MTR_3g006065 49.180 122 46 4 63 168 45 166 2.15e-20 87.4
MS.gene006070.t1 MTR_3g006150 47.899 119 46 4 60 162 42 160 2.48e-20 86.7
MS.gene006070.t1 MTR_3g006105 46.094 128 48 4 63 169 49 176 5.27e-20 86.3
MS.gene006070.t1 MTR_3g006105 33.784 148 79 5 92 227 4 144 4.57e-12 64.3
MS.gene006070.t1 MTR_6g091850 46.835 79 33 2 260 329 23 101 2.19e-16 73.9
MS.gene006070.t1 MTR_1g105960 54.412 68 26 1 99 161 2 69 1.18e-15 72.4
MS.gene006070.t1 MTR_1g105960 35.849 106 49 2 23 128 5 91 7.43e-12 61.6
MS.gene006070.t1 MTR_1g104980 32.353 170 98 4 23 183 3 164 2.82e-15 73.2
MS.gene006070.t1 MTR_1g100260 41.414 99 49 2 1 92 1 97 3.20e-15 71.6
MS.gene006070.t1 MTR_1g093310 51.282 78 37 1 90 167 1 77 3.43e-15 70.1
MS.gene006070.t1 MTR_5g036670 32.903 155 84 3 18 156 42 192 7.36e-15 76.3
MS.gene006070.t1 MTR_5g036670 51.351 74 31 1 94 162 39 112 1.99e-14 74.7
MS.gene006070.t1 MTR_1g104940 42.553 94 46 3 89 174 5 98 1.06e-14 70.1
MS.gene006070.t1 MTR_1g105010 39.394 99 44 2 97 190 15 102 3.18e-14 68.6
MS.gene006070.t1 MTR_8g062700 48.000 75 34 1 94 163 38 112 1.79e-13 72.0
MS.gene006070.t1 MTR_8g062700 33.766 154 82 4 18 155 41 190 2.48e-13 71.2
MS.gene006070.t1 MTR_7g013380 37.069 116 57 4 66 165 144 259 1.84e-13 70.1
MS.gene006070.t1 MTR_8g062700 48.000 75 34 1 94 163 38 112 1.87e-13 71.6
MS.gene006070.t1 MTR_8g062700 33.766 154 82 4 18 155 41 190 2.72e-13 71.2
MS.gene006070.t1 MTR_6g008970 47.297 74 34 1 94 162 59 132 4.19e-12 67.8
MS.gene006070.t1 MTR_6g008970 31.169 154 86 3 18 155 62 211 1.46e-11 65.9
MS.gene006070.t1 MTR_1g093300 77.500 40 9 0 208 247 6 45 1.81e-11 61.6
MS.gene006070.t1 MTR_1g104937 36.937 111 58 5 86 188 2 108 2.17e-11 60.5
MS.gene006070.t1 MTR_6g008995 47.143 70 32 1 98 162 37 106 2.22e-11 65.1
MS.gene006070.t1 MTR_6g008995 30.612 147 84 3 23 155 41 183 5.91e-11 63.5
MS.gene006070.t1 MTR_8g062350 44.595 74 36 1 94 162 10 83 6.05e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006070.t1 AT1G10450 36.250 160 83 5 10 155 76 230 1.90e-16 80.9
MS.gene006070.t1 AT1G10450 43.210 81 41 1 98 173 84 164 6.47e-11 63.9
MS.gene006070.t1 AT1G10450 36.875 160 82 5 10 155 25 179 2.61e-16 80.5
MS.gene006070.t1 AT1G10450 43.210 81 41 1 98 173 33 113 7.40e-11 63.9
MS.gene006070.t1 AT1G10450 36.875 160 82 5 10 155 25 179 2.61e-16 80.5
MS.gene006070.t1 AT1G10450 43.210 81 41 1 98 173 33 113 7.40e-11 63.9
MS.gene006070.t1 AT1G23810 31.176 170 88 4 10 154 5 170 3.66e-16 77.0
MS.gene006070.t1 AT1G24190 52.703 74 30 1 94 162 10 83 2.79e-14 74.3
MS.gene006070.t1 AT1G24190 32.468 154 84 4 18 155 13 162 2.57e-13 71.2
MS.gene006070.t1 AT1G24190 52.703 74 30 1 94 162 10 83 2.90e-14 74.3
MS.gene006070.t1 AT1G24190 32.468 154 84 4 18 155 13 162 2.74e-13 71.2
MS.gene006070.t1 AT1G24190 52.703 74 30 1 94 162 10 83 2.94e-14 74.3
MS.gene006070.t1 AT1G24190 32.468 154 84 4 18 155 13 162 2.62e-13 71.2
MS.gene006070.t1 AT3G01320 46.250 80 38 1 88 162 47 126 3.59e-14 73.9
MS.gene006070.t1 AT3G01320 32.258 155 82 5 18 155 56 204 2.59e-11 65.5
MS.gene006070.t1 AT3G01320 46.250 80 38 1 88 162 47 126 3.72e-14 73.9
MS.gene006070.t1 AT3G01320 32.258 155 82 5 18 155 56 204 2.88e-11 65.1
MS.gene006070.t1 AT1G70060 46.067 89 43 1 94 177 10 98 9.63e-14 72.8
MS.gene006070.t1 AT1G70060 46.067 89 43 1 94 177 10 98 9.63e-14 72.8
MS.gene006070.t1 AT1G24230 30.128 156 95 4 18 167 13 160 4.99e-13 68.2
MS.gene006070.t1 AT5G15025 46.667 75 35 1 93 162 42 116 5.07e-13 65.5
MS.gene006070.t1 AT5G15020 46.753 77 36 1 91 162 45 121 2.12e-12 68.6
MS.gene006070.t1 AT5G15020 33.553 152 83 4 18 155 51 198 3.27e-12 68.2
MS.gene006070.t1 AT5G15020 46.753 77 36 1 91 162 45 121 2.22e-12 68.6
MS.gene006070.t1 AT5G15020 33.553 152 83 4 18 155 51 198 3.58e-12 67.8
MS.gene006070.t1 AT1G27260 30.058 173 93 4 23 171 7 175 2.67e-12 65.9
MS.gene006070.t1 AT1G70030 43.243 74 37 1 94 162 7 80 3.79e-11 61.2
MS.gene006070.t1 AT1G59890 47.143 70 32 1 98 162 45 114 6.46e-11 63.9
MS.gene006070.t1 AT1G59890 47.143 70 32 1 98 162 45 114 6.93e-11 63.9
MS.gene006070.t1 AT1G59890 47.143 70 32 1 98 162 45 114 7.01e-11 63.9
MS.gene006070.t1 AT1G59890 47.143 70 32 1 98 162 45 114 7.06e-11 63.9

Find 62 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCGAAATCTAGTATTT+TGG 0.174602 1.3:-67573179 None:intergenic
CATCAAATCACACTTTCTTT+AGG 0.218768 1.3:+67572204 MS.gene006070:CDS
ACAACATGTTCCGTGTATTC+AGG 0.254219 1.3:+67574033 MS.gene006070:CDS
ATCAAATCACACTTTCTTTA+GGG 0.254430 1.3:+67572205 MS.gene006070:CDS
GTTGAACCACAAAATTAAAT+TGG 0.276783 1.3:-67572373 None:intergenic
CATAGGTATAAAGGTGAAAA+AGG 0.287802 1.3:+67573102 MS.gene006070:intron
TTTGATCCTTGAAATTGTTT+AGG 0.307479 1.3:-67572311 None:intergenic
TAGATCATCGCGAACTCTAT+AGG 0.330837 1.3:-67571980 None:intergenic
TAACAATTTCCTTGTACCTT+AGG 0.353520 1.3:+67573782 MS.gene006070:CDS
AGAGTGAAGGAGCTGCTTAA+AGG 0.369945 1.3:+67572345 MS.gene006070:CDS
GAATCTCCTAAACAATTTCA+AGG 0.370888 1.3:+67572305 MS.gene006070:CDS
GGGCATACAGATTTAATGTT+GGG 0.407816 1.3:+67572156 MS.gene006070:CDS
AAGAGAGCGGTGAACTTCCT+TGG 0.412247 1.3:+67573137 MS.gene006070:CDS
CTCTCATATCCCCACATGAC+CGG 0.418746 1.3:-67573979 None:intergenic
TCACTAACAAAGCCAACATT+GGG 0.424210 1.3:+67573701 MS.gene006070:CDS
GCGAACTCTATAGGGCTTGT+TGG 0.426428 1.3:-67571971 None:intergenic
AGATCATCGCGAACTCTATA+GGG 0.427017 1.3:-67571979 None:intergenic
GAGTGAAGGAGCTGCTTAAA+GGG 0.452409 1.3:+67572346 MS.gene006070:CDS
AGAGATGGTTGTTGACTTTG+TGG 0.453069 1.3:+67573654 MS.gene006070:intron
AAGTATCGTTTCATGATAAG+AGG 0.455819 1.3:+67572262 MS.gene006070:CDS
AGTGTGATTTGATGTTCCTT+TGG 0.456196 1.3:-67572405 None:intergenic
ATTTACTTTCTTAAGATACA+TGG 0.457924 1.3:-67572004 None:intergenic
CAACATGTTCCGTGTATTCA+GGG 0.465231 1.3:+67574034 MS.gene006070:CDS
AGAGAGCGGTGAACTTCCTT+GGG 0.481057 1.3:+67573138 MS.gene006070:CDS
CCGGTGGTGTCAAGTTGAAA+TGG 0.483311 1.3:-67572429 None:intergenic
TCTTCACTCTTTCTTTGAAG+AGG 0.486448 1.3:-67572122 None:intergenic
AGTGTGATTTGATGTTCCTT+TGG 0.486633 1.3:-67572195 None:intergenic
TGATTTGATGTTCCTTTGGC+AGG 0.495215 1.3:-67572401 None:intergenic
CTCAAGCTGACTATTACTCC+CGG 0.495620 1.3:+67573757 MS.gene006070:CDS
ATTGTGATTCATAGGTATAA+AGG 0.496061 1.3:+67573093 MS.gene006070:intron
GTACAAGGAAATTGTTAAGC+CGG 0.501676 1.3:-67573776 None:intergenic
AGAGTGAAGATCTTGTTTGA+AGG 0.516121 1.3:+67572135 MS.gene006070:CDS
CCATTTCAACTTGACACCAC+CGG 0.523375 1.3:+67572429 MS.gene006070:CDS
GAGTGAAGATCTTGTTTGAA+GGG 0.525367 1.3:+67572136 MS.gene006070:CDS
ATCACTAACAAAGCCAACAT+TGG 0.526313 1.3:+67573700 MS.gene006070:CDS
TACAAGGAAATTGTTAAGCC+GGG 0.535178 1.3:-67573775 None:intergenic
ATCATGCTTCCGACTCCTCA+TGG 0.544689 1.3:+67574081 MS.gene006070:CDS
AGGGCATACAGATTTAATGT+TGG 0.545740 1.3:+67572155 MS.gene006070:CDS
CAAGCTGAGTACCCCAATGT+TGG 0.546762 1.3:-67573713 None:intergenic
TCATGGAGCAAGTTCTTCCA+TGG 0.550097 1.3:+67574098 MS.gene006070:CDS
CATTGAGCAACCCGGTCATG+TGG 0.554102 1.3:+67573968 MS.gene006070:CDS
TCTCATATCCCCACATGACC+GGG 0.557723 1.3:-67573978 None:intergenic
GAAAATAAATGATTACTCAT+CGG 0.566497 1.3:-67571940 None:intergenic
CAAGTTCTTCCATGGTCGAA+TGG 0.570891 1.3:+67574106 MS.gene006070:CDS
AGTATCGTTTCATGATAAGA+GGG 0.573814 1.3:+67572263 MS.gene006070:CDS
GTGAAGAAGGTAGAAGAGAG+CGG 0.583803 1.3:+67573124 MS.gene006070:CDS
AAGTGCTGTGGCAAGAGTGA+AGG 0.583838 1.3:+67572332 MS.gene006070:CDS
TTCAACCAACCTAAGGTACA+AGG 0.585166 1.3:-67573791 None:intergenic
GAACTTGCTCCATGAGGAGT+CGG 0.587574 1.3:-67574090 None:intergenic
ATTCAACATCTTGCTGCCAA+AGG 0.592473 1.3:+67572179 MS.gene006070:CDS
GTTAGCATCCCCTGAATACA+CGG 0.598460 1.3:-67574043 None:intergenic
ATTGAGCAACCCGGTCATGT+GGG 0.606596 1.3:+67573969 MS.gene006070:CDS
ATGATATCAAGCACATCCCA+AGG 0.608076 1.3:-67573154 None:intergenic
CTGTTATGCATTGAGCAACC+CGG 0.611285 1.3:+67573960 MS.gene006070:CDS
AGATGCATCAGCGTTTCTTG+AGG 0.623515 1.3:+67572233 MS.gene006070:CDS
TTGAGCAACCCGGTCATGTG+GGG 0.627009 1.3:+67573970 MS.gene006070:CDS
GTTCAACTACTTCCTGCCAA+AGG 0.648751 1.3:+67572389 MS.gene006070:CDS
AACATGTTCCGTGTATTCAG+GGG 0.651389 1.3:+67574035 MS.gene006070:CDS
TCTAAAACACCATTCGACCA+TGG 0.653117 1.3:-67574115 None:intergenic
TTTCAAGGATCAAAGTGCTG+TGG 0.665575 1.3:+67572320 MS.gene006070:CDS
ATGGAAGAACTTGCTCCATG+AGG 0.689817 1.3:-67574096 None:intergenic
CACTAACAAAGCCAACATTG+GGG 0.702886 1.3:+67573702 MS.gene006070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTAAAAAATTTATTGTA+GGG + chr1.3:67572678-67572697 MS.gene006070:intron 10.0%
!! ATTTATTAATGACAAAAATA+AGG + chr1.3:67573839-67573858 MS.gene006070:intron 10.0%
!! TAATCTAAAAAATTTATTGT+AGG + chr1.3:67572677-67572696 MS.gene006070:intron 10.0%
!! AATATATCGAACAAATATAA+TGG - chr1.3:67572595-67572614 None:intergenic 15.0%
!! AATATTTAATGCTTTCAATT+AGG + chr1.3:67572809-67572828 MS.gene006070:intron 15.0%
!! ATCTAAAAAATTTATTGTAG+GGG + chr1.3:67572679-67572698 MS.gene006070:intron 15.0%
!! GATTGATTAACATAAATAAA+CGG - chr1.3:67573441-67573460 None:intergenic 15.0%
!!! AATTGAAAGCATTAAATATT+AGG - chr1.3:67572809-67572828 None:intergenic 15.0%
!!! TTTTTGTTTCAAAATTTGAT+AGG + chr1.3:67573932-67573951 MS.gene006070:intron 15.0%
!! AAAAATAAGGAATATCTACA+AGG + chr1.3:67573852-67573871 MS.gene006070:intron 20.0%
!! ATTTACTTTCTTAAGATACA+TGG - chr1.3:67572007-67572026 None:intergenic 20.0%
!! GAAAAGGAATTAAAGATATA+GGG - chr1.3:67572744-67572763 None:intergenic 20.0%
!! TGAAAAGGAATTAAAGATAT+AGG - chr1.3:67572745-67572764 None:intergenic 20.0%
!!! ATATTTGTTGTATTTTATGC+TGG + chr1.3:67572927-67572946 MS.gene006070:intron 20.0%
! AAATTTCCTTATGGGAAAAT+GGG + chr1.3:67572953-67572972 MS.gene006070:intron 25.0%
! AATTTCTTGGAGAAATTTCT+TGG + chr1.3:67573249-67573268 MS.gene006070:intron 25.0%
! ACCTTCTTTATTCTTGTAAA+TGG - chr1.3:67573463-67573482 None:intergenic 25.0%
! ATATCGAACAAATATAATGG+TGG - chr1.3:67572592-67572611 None:intergenic 25.0%
! ATCAAATCACACTTTCTTTA+GGG + chr1.3:67572205-67572224 MS.gene006070:CDS 25.0%
! ATTGTGATTCATAGGTATAA+AGG + chr1.3:67573093-67573112 MS.gene006070:intron 25.0%
! GTTGAACCACAAAATTAAAT+TGG - chr1.3:67572376-67572395 None:intergenic 25.0%
! TAAATTTCCTTATGGGAAAA+TGG + chr1.3:67572952-67572971 MS.gene006070:intron 25.0%
! TAAGAATAGTTAACTTCAGA+AGG - chr1.3:67573499-67573518 None:intergenic 25.0%
! TCCATTTACAAGAATAAAGA+AGG + chr1.3:67573459-67573478 MS.gene006070:intron 25.0%
! TTAGGATGTTAATATATGTG+AGG + chr1.3:67572827-67572846 MS.gene006070:intron 25.0%
! TTTGATCCTTGAAATTGTTT+AGG - chr1.3:67572314-67572333 None:intergenic 25.0%
!! AAAGCATTAAATATTAGGCA+TGG - chr1.3:67572804-67572823 None:intergenic 25.0%
!! AACAAATTAGTCTCTAAACT+AGG - chr1.3:67572657-67572676 None:intergenic 25.0%
!! ATGTAATGAACAACTTTTAG+TGG + chr1.3:67573813-67573832 MS.gene006070:intron 25.0%
!! CCTTTTCATTTTCTTTTGTT+GGG + chr1.3:67572757-67572776 MS.gene006070:intron 25.0%
!! CTTTTCATTTTCTTTTGTTG+GGG + chr1.3:67572758-67572777 MS.gene006070:intron 25.0%
!! GGGTTTTTCATAAAATTTCT+TGG + chr1.3:67573236-67573255 MS.gene006070:intron 25.0%
!! TCCTTTTCATTTTCTTTTGT+TGG + chr1.3:67572756-67572775 MS.gene006070:intron 25.0%
AATAGTTAACTTCAGAAGGA+AGG - chr1.3:67573495-67573514 None:intergenic 30.0%
AATTTCCTTATGGGAAAATG+GGG + chr1.3:67572954-67572973 MS.gene006070:intron 30.0%
AGTATCGTTTCATGATAAGA+GGG + chr1.3:67572263-67572282 MS.gene006070:CDS 30.0%
ATAGTTAACTTCAGAAGGAA+GGG - chr1.3:67573494-67573513 None:intergenic 30.0%
ATCATAGATTACTAACTGAC+CGG - chr1.3:67572451-67572470 None:intergenic 30.0%
CATAGGTATAAAGGTGAAAA+AGG + chr1.3:67573102-67573121 MS.gene006070:intron 30.0%
CATCAAATCACACTTTCTTT+AGG + chr1.3:67572204-67572223 MS.gene006070:CDS 30.0%
CCCAACAAAAGAAAATGAAA+AGG - chr1.3:67572760-67572779 None:intergenic 30.0%
GAATCTCCTAAACAATTTCA+AGG + chr1.3:67572305-67572324 MS.gene006070:CDS 30.0%
GATGATATCACAGAAAAATG+AGG - chr1.3:67573000-67573019 None:intergenic 30.0%
GGAATTAAAGATATAGGGAA+AGG - chr1.3:67572739-67572758 None:intergenic 30.0%
TAACAATTTCCTTGTACCTT+AGG + chr1.3:67573782-67573801 MS.gene006070:CDS 30.0%
TGACCAAAAAGTTTATCGTT+AGG + chr1.3:67573342-67573361 MS.gene006070:intron 30.0%
TTCGAAATTTGAAGAAGTAG+TGG - chr1.3:67573286-67573305 None:intergenic 30.0%
TTGGGTTACTTATTTGACAA+TGG + chr1.3:67573624-67573643 MS.gene006070:intron 30.0%
TTTGTCAAACTGGAAACTTT+GGG + chr1.3:67573895-67573914 MS.gene006070:intron 30.0%
! AAGTATCGTTTCATGATAAG+AGG + chr1.3:67572262-67572281 MS.gene006070:CDS 30.0%
! GTCATCGAAATCTAGTATTT+TGG - chr1.3:67573182-67573201 None:intergenic 30.0%
! TCTCCTAACGATAAACTTTT+TGG - chr1.3:67573348-67573367 None:intergenic 30.0%
! TTTTAGACATCTACGATATG+AGG + chr1.3:67574131-67574150 MS.gene006070:CDS 30.0%
! TTTTGTCAAACTGGAAACTT+TGG + chr1.3:67573894-67573913 MS.gene006070:intron 30.0%
!! AACAATGAGTTTTGTCAAAC+TGG + chr1.3:67573885-67573904 MS.gene006070:intron 30.0%
!! AGTTTACTTTCCCATTTTTG+TGG - chr1.3:67572861-67572880 None:intergenic 30.0%
!! ATAAACTTTTTGGTCAGGTA+TGG - chr1.3:67573338-67573357 None:intergenic 30.0%
!! GGCATACCAATTTAATTTTG+TGG + chr1.3:67572367-67572386 MS.gene006070:CDS 30.0%
!! TAACGATAAACTTTTTGGTC+AGG - chr1.3:67573343-67573362 None:intergenic 30.0%
AAAGGTGAAAAAGGTGAAGA+AGG + chr1.3:67573111-67573130 MS.gene006070:CDS 35.0%
AATCATGGCATTACAGCATA+TGG - chr1.3:67572553-67572572 None:intergenic 35.0%
AATTTCCTTGTACCTTAGGT+TGG + chr1.3:67573786-67573805 MS.gene006070:intron 35.0%
ACACTGTCATTGTGATTCAT+AGG + chr1.3:67573085-67573104 MS.gene006070:intron 35.0%
ACTAACTACTCACATGAAGA+AGG + chr1.3:67572878-67572897 MS.gene006070:intron 35.0%
AGCATATGGTAGAAACATGA+GGG - chr1.3:67572539-67572558 None:intergenic 35.0%
AGGGCATACAGATTTAATGT+TGG + chr1.3:67572155-67572174 MS.gene006070:CDS 35.0%
AGTGTGATTTGATGTTCCTT+TGG - chr1.3:67572198-67572217 None:intergenic 35.0%
ATCACTAACAAAGCCAACAT+TGG + chr1.3:67573700-67573719 MS.gene006070:CDS 35.0%
CAGAAGACGAAACATAAGTA+GGG - chr1.3:67573390-67573409 None:intergenic 35.0%
CATTACATTCAACCAACCTA+AGG - chr1.3:67573801-67573820 None:intergenic 35.0%
CTTTCCTAGATTGAGTCTAA+TGG + chr1.3:67572628-67572647 MS.gene006070:intron 35.0%
GGGCATACAGATTTAATGTT+GGG + chr1.3:67572156-67572175 MS.gene006070:CDS 35.0%
GTACAAGGAAATTGTTAAGC+CGG - chr1.3:67573779-67573798 None:intergenic 35.0%
TACAAGGAAATTGTTAAGCC+GGG - chr1.3:67573778-67573797 None:intergenic 35.0%
TCACTAACAAAGCCAACATT+GGG + chr1.3:67573701-67573720 MS.gene006070:CDS 35.0%
TGAATCACAATGACAGTGTT+AGG - chr1.3:67573084-67573103 None:intergenic 35.0%
TGGCAACAAACCAAAAATCA+TGG - chr1.3:67572568-67572587 None:intergenic 35.0%
TTGAAGAAGTAGTGGTTCTT+GGG - chr1.3:67573278-67573297 None:intergenic 35.0%
TTTATTGTAGGGGAAATGCA+TGG + chr1.3:67572689-67572708 MS.gene006070:intron 35.0%
TTTGAAGAAGTAGTGGTTCT+TGG - chr1.3:67573279-67573298 None:intergenic 35.0%
! AGAGTGAAGATCTTGTTTGA+AGG + chr1.3:67572135-67572154 MS.gene006070:CDS 35.0%
! ATTTTCTTTTGTTGGGGAGT+GGG + chr1.3:67572764-67572783 MS.gene006070:intron 35.0%
! CGAACAAATATAATGGTGGA+TGG - chr1.3:67572588-67572607 None:intergenic 35.0%
! GAGTGAAGATCTTGTTTGAA+GGG + chr1.3:67572136-67572155 MS.gene006070:CDS 35.0%
! GCTGGTCTAAATTTCCTTAT+GGG + chr1.3:67572945-67572964 MS.gene006070:intron 35.0%
! TCTTCACTCTTTCTTTGAAG+AGG - chr1.3:67572125-67572144 None:intergenic 35.0%
! TGCTGGTCTAAATTTCCTTA+TGG + chr1.3:67572944-67572963 MS.gene006070:intron 35.0%
! TGCTGTAATGCCATGATTTT+TGG + chr1.3:67572555-67572574 MS.gene006070:intron 35.0%
! TGCTTTTGACAAATGCTCTA+AGG + chr1.3:67573540-67573559 MS.gene006070:intron 35.0%
!! ATGCTCTAAGGAATTTGTCT+TGG + chr1.3:67573552-67573571 MS.gene006070:intron 35.0%
AACATGTTCCGTGTATTCAG+GGG + chr1.3:67574035-67574054 MS.gene006070:CDS 40.0%
ACAACATGTTCCGTGTATTC+AGG + chr1.3:67574033-67574052 MS.gene006070:CDS 40.0%
ACGAAACATAAGTAGGGTAG+AGG - chr1.3:67573384-67573403 None:intergenic 40.0%
ACTTATGTTTCGTCTTCTGG+AGG + chr1.3:67573391-67573410 MS.gene006070:intron 40.0%
AGATCATCGCGAACTCTATA+GGG - chr1.3:67571982-67572001 None:intergenic 40.0%
AGGATCCATGACCACAAAAA+TGG + chr1.3:67572847-67572866 MS.gene006070:intron 40.0%
ATAGATTACTAACTGACCGG+TGG - chr1.3:67572448-67572467 None:intergenic 40.0%
ATCAATCTCGAAACTCTGGT+TGG + chr1.3:67573605-67573624 MS.gene006070:intron 40.0%
ATGATATCAAGCACATCCCA+AGG - chr1.3:67573157-67573176 None:intergenic 40.0%
ATTCAACATCTTGCTGCCAA+AGG + chr1.3:67572179-67572198 MS.gene006070:CDS 40.0%
CAACATGTTCCGTGTATTCA+GGG + chr1.3:67574034-67574053 MS.gene006070:CDS 40.0%
CACTAACAAAGCCAACATTG+GGG + chr1.3:67573702-67573721 MS.gene006070:CDS 40.0%
CAGCATATGGTAGAAACATG+AGG - chr1.3:67572540-67572559 None:intergenic 40.0%
CCAGAAGACGAAACATAAGT+AGG - chr1.3:67573391-67573410 None:intergenic 40.0%
CCTACTTATGTTTCGTCTTC+TGG + chr1.3:67573388-67573407 MS.gene006070:intron 40.0%
GACAATGGAAAATGCAGAGA+TGG + chr1.3:67573639-67573658 MS.gene006070:intron 40.0%
GCATTTGTCAAAAGCAAGCA+AGG - chr1.3:67573536-67573555 None:intergenic 40.0%
GGATCCATGACCACAAAAAT+GGG + chr1.3:67572848-67572867 MS.gene006070:intron 40.0%
GTCTATCAATCTCGAAACTC+TGG + chr1.3:67573601-67573620 MS.gene006070:intron 40.0%
TAGATCATCGCGAACTCTAT+AGG - chr1.3:67571983-67572002 None:intergenic 40.0%
TAGTGTGTGCAAGAATTGGA+GGG + chr1.3:67573216-67573235 MS.gene006070:intron 40.0%
TCAATCTCGAAACTCTGGTT+GGG + chr1.3:67573606-67573625 MS.gene006070:intron 40.0%
TGATTTGATGTTCCTTTGGC+AGG - chr1.3:67572194-67572213 None:intergenic 40.0%
TTCAACCAACCTAAGGTACA+AGG - chr1.3:67573794-67573813 None:intergenic 40.0%
TTGCTAGTGTGTGCAAGAAT+TGG + chr1.3:67573212-67573231 MS.gene006070:intron 40.0%
! CATTTTCTTTTGTTGGGGAG+TGG + chr1.3:67572763-67572782 MS.gene006070:intron 40.0%
! CTCTAAGGAATTTGTCTTGG+TGG + chr1.3:67573555-67573574 MS.gene006070:intron 40.0%
! GATTACCCCATTTTCCCATA+AGG - chr1.3:67572962-67572981 None:intergenic 40.0%
! TCTAAAACACCATTCGACCA+TGG - chr1.3:67574118-67574137 None:intergenic 40.0%
! TTTTCTTTTGTTGGGGAGTG+GGG + chr1.3:67572765-67572784 MS.gene006070:intron 40.0%
!! AGAGATGGTTGTTGACTTTG+TGG + chr1.3:67573654-67573673 MS.gene006070:intron 40.0%
!! CTTTCCCATTTTTGTGGTCA+TGG - chr1.3:67572855-67572874 None:intergenic 40.0%
!! TTTCAAGGATCAAAGTGCTG+TGG + chr1.3:67572320-67572339 MS.gene006070:CDS 40.0%
AGAGTGAAGGAGCTGCTTAA+AGG + chr1.3:67572345-67572364 MS.gene006070:CDS 45.0%
AGATGCATCAGCGTTTCTTG+AGG + chr1.3:67572233-67572252 MS.gene006070:CDS 45.0%
CAAGTTCTTCCATGGTCGAA+TGG + chr1.3:67574106-67574125 MS.gene006070:CDS 45.0%
CCATTTCAACTTGACACCAC+CGG + chr1.3:67572429-67572448 MS.gene006070:CDS 45.0%
CTAGTGTGTGCAAGAATTGG+AGG + chr1.3:67573215-67573234 MS.gene006070:intron 45.0%
CTCAAGCTGACTATTACTCC+CGG + chr1.3:67573757-67573776 MS.gene006070:CDS 45.0%
CTGTTATGCATTGAGCAACC+CGG + chr1.3:67573960-67573979 MS.gene006070:CDS 45.0%
GACGCCATTAGACTCAATCT+AGG - chr1.3:67572635-67572654 None:intergenic 45.0%
GAGTGAAGGAGCTGCTTAAA+GGG + chr1.3:67572346-67572365 MS.gene006070:CDS 45.0%
GTGAAGAAGGTAGAAGAGAG+CGG + chr1.3:67573124-67573143 MS.gene006070:CDS 45.0%
GTTAGCATCCCCTGAATACA+CGG - chr1.3:67574046-67574065 None:intergenic 45.0%
GTTCAACTACTTCCTGCCAA+AGG + chr1.3:67572389-67572408 MS.gene006070:CDS 45.0%
TAGGGAAAGGTCAAGTAGTG+AGG - chr1.3:67572726-67572745 None:intergenic 45.0%
TCATGGAGCAAGTTCTTCCA+TGG + chr1.3:67574098-67574117 MS.gene006070:CDS 45.0%
! ATGGAAGAACTTGCTCCATG+AGG - chr1.3:67574099-67574118 None:intergenic 45.0%
AAGAGAGCGGTGAACTTCCT+TGG + chr1.3:67573137-67573156 MS.gene006070:CDS 50.0%
AGAGAGCGGTGAACTTCCTT+GGG + chr1.3:67573138-67573157 MS.gene006070:CDS 50.0%
ATCATGCTTCCGACTCCTCA+TGG + chr1.3:67574081-67574100 MS.gene006070:CDS 50.0%
ATTGAGCAACCCGGTCATGT+GGG + chr1.3:67573969-67573988 MS.gene006070:CDS 50.0%
CAAGCTGAGTACCCCAATGT+TGG - chr1.3:67573716-67573735 None:intergenic 50.0%
CTCTCATATCCCCACATGAC+CGG - chr1.3:67573982-67574001 None:intergenic 50.0%
GCGAACTCTATAGGGCTTGT+TGG - chr1.3:67571974-67571993 None:intergenic 50.0%
TCTCATATCCCCACATGACC+GGG - chr1.3:67573981-67574000 None:intergenic 50.0%
! AAGTGCTGTGGCAAGAGTGA+AGG + chr1.3:67572332-67572351 MS.gene006070:CDS 50.0%
! GAACTTGCTCCATGAGGAGT+CGG - chr1.3:67574093-67574112 None:intergenic 50.0%
!! CCGGTGGTGTCAAGTTGAAA+TGG - chr1.3:67572432-67572451 None:intergenic 50.0%
CATTGAGCAACCCGGTCATG+TGG + chr1.3:67573968-67573987 MS.gene006070:CDS 55.0%
TTGAGCAACCCGGTCATGTG+GGG + chr1.3:67573970-67573989 MS.gene006070:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 67571943 67574176 67571943 ID=MS.gene006070
chr1.3 mRNA 67571943 67574176 67571943 ID=MS.gene006070.t1;Parent=MS.gene006070
chr1.3 exon 67571943 67572450 67571943 ID=MS.gene006070.t1.exon1;Parent=MS.gene006070.t1
chr1.3 CDS 67571943 67572450 67571943 ID=cds.MS.gene006070.t1;Parent=MS.gene006070.t1
chr1.3 exon 67573107 67573217 67573107 ID=MS.gene006070.t1.exon2;Parent=MS.gene006070.t1
chr1.3 CDS 67573107 67573217 67573107 ID=cds.MS.gene006070.t1;Parent=MS.gene006070.t1
chr1.3 exon 67573656 67573803 67573656 ID=MS.gene006070.t1.exon3;Parent=MS.gene006070.t1
chr1.3 CDS 67573656 67573803 67573656 ID=cds.MS.gene006070.t1;Parent=MS.gene006070.t1
chr1.3 exon 67573954 67574176 67573954 ID=MS.gene006070.t1.exon4;Parent=MS.gene006070.t1
chr1.3 CDS 67573954 67574176 67573954 ID=cds.MS.gene006070.t1;Parent=MS.gene006070.t1
Gene Sequence

>MS.gene006070

ATGAGTAATCATTTATTTTCTGATCTATCCAACAAGCCCTATAGAGTTCGCGATGATCTATCCATGTATCTTAAGAAAGTAAATGTTGCGTTTCAATATGACAGAATAAAGAATGATCAGTTTAACGAACTTCGATATGAAGTAGTAAGTCATAAATATGATCATGATGAGTTTTTAAACCTCTTCAAAGAAAGAGTGAAGATCTTGTTTGAAGGGCATACAGATTTAATGTTGGGATTCAACATCTTGCTGCCAAAGGAACATCAAATCACACTTTCTTTAGGGTCTAAAGATGCATCAGCGTTTCTTGAGGCTGTAAAAGTATCGTTTCATGATAAGAGGGAAACTTATAATGAGTTTTTGAATCTCCTAAACAATTTCAAGGATCAAAGTGCTGTGGCAAGAGTGAAGGAGCTGCTTAAAGGGCATACCAATTTAATTTTGTGGTTCAACTACTTCCTGCCAAAGGAACATCAAATCACACTTCCATTTCAACTTGACACCACCGGTCAGTTAGTAATCTATGATTATTCATTGCACTTCTCATATGTTGATACTTTTATGCAGTTTTTTTTTTTTTTTACTATATATATCCCTCATGTTTCTACCATATGCTGTAATGCCATGATTTTTGGTTTGTTGCCATCCACCATTATATTTGTTCGATATATTTAAATTGTTCAATCTTTCCTAGATTGAGTCTAATGGCGTCCTAGTTTAGAGACTAATTTGTTTAATCTAAAAAATTTATTGTAGGGGAAATGCATGGAAATGATTTTTCCTCACTACTTGACCTTTCCCTATATCTTTAATTCCTTTTCATTTTCTTTTGTTGGGGAGTGGGGTTCAAATAAAATGCCATGCCTAATATTTAATGCTTTCAATTAGGATGTTAATATATGTGAGGATCCATGACCACAAAAATGGGAAAGTAAACTAACTACTCACATGAAGAAGGAAAAAAAAAAACAAAAAAGATCACACATATTTGTTGTATTTTATGCTGGTCTAAATTTCCTTATGGGAAAATGGGGTAATCAATATTTGTTTATCTCCTCATTTTTCTGTGATATCATCAGATTAACGATAAAATATCTTAACTTTTATAAATTAAAAAAAATAACATGTTTAGAAATCACCTAACACTGTCATTGTGATTCATAGGTATAAAGGTGAAAAAGGTGAAGAAGGTAGAAGAGAGCGGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAATACTAGATTTCGATGACTTTTTTCAGTTTGCTAGTGTGTGCAAGAATTGGAGGGTTTTTCATAAAATTTCTTGGAGAAATTTCTTGGCATCCCAAGAACCACTACTTCTTCAAATTTCGAATCAAGTTAAGAAATCATATTTCTTTATTACCATACCTGACCAAAAAGTTTATCGTTAGGAGATGATGAAGTACTTCCTCTACCCTACTTATGTTTCGTCTTCTGGAGGATATTTTATCATGACAAAACACAACCGTTTATTTATGTTAATCAATCCATTTACAAGAATAAAGAAGGTAATCAATACCCTTCCTTCTGAAGTTAACTATTCTTATTTAACTGATCGTGCCTTGCTTGCTTTTGACAAATGCTCTAAGGAATTTGTCTTGGTGGTTTTATGCGAAAATCGATTGCATGTCTATCAATCTCGAAACTCTGGTTGGGTTACTTATTTGACAATGGAAAATGCAGAGATGGTTGTTGACTTTGTGGTTTTTCATAATATAATATATGTTATCACTAACAAAGCCAACATTGGGGTACTCAGCTTGAATTCTGCAAATATTAAATTTCTCAAGCTGACTATTACTCCCGGCTTAACAATTTCCTTGTACCTTAGGTTGGTTGAATGTAATGAACAACTTTTAGTGGTTGATTTATTAATGACAAAAATAAGGAATATCTACAAGGTAGACTTCTCAACAATGAGTTTTGTCAAACTGGAAACTTTGGGCGATACTGCATTATTTTTTGTTTCAAAATTTGATAGGAGTAACTGTTATGCATTGAGCAACCCGGTCATGTGGGGATATGAGAGCAACTCTGTGTATGTCATCGATCTTTTCTCTACAACATGTTCCGTGTATTCAGGGGATGCTAACGAGTTGCAAAAATGCATCATGCTTCCGACTCCTCATGGAGCAAGTTCTTCCATGGTCGAATGGTGTTTTAGACATCTACGATATGAGGTAGATTATTCTCAAGTTGAGTAA
Protein sequence

>MS.gene006070.t1

MSNHLFSDLSNKPYRVRDDLSMYLKKVNVAFQYDRIKNDQFNELRYEVVSHKYDHDEFLNLFKERVKILFEGHTDLMLGFNILLPKEHQITLSLGSKDASAFLEAVKVSFHDKRETYNEFLNLLNNFKDQSAVARVKELLKGHTNLILWFNYFLPKEHQITLPFQLDTTGIKVKKVKKVEESGELPWDVLDIISKILDFDDFFQFAKMVVDFVVFHNIIYVITNKANIGVLSLNSANIKFLKLTITPGLTISLYLRSNCYALSNPVMWGYESNSVYVIDLFSTTCSVYSGDANELQKCIMLPTPHGASSSMVEWCFRHLRYEVDYSQVE