Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006156.t1 | KEH43651.1 | 92.5 | 212 | 14 | 1 | 238 | 447 | 14 | 225 | 4.40E-92 | 348.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006156.t1 | P42777 | 39.4 | 160 | 70 | 5 | 22 | 178 | 65 | 200 | 1.1e-14 | 82.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006156.t1 | A0A072VPQ1 | 92.5 | 212 | 14 | 1 | 238 | 447 | 14 | 225 | 3.1e-92 | 348.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene006156.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006156.t1 | MTR_1g098590 | 96.694 | 242 | 4 | 1 | 1 | 242 | 1 | 238 | 1.18e-166 | 468 |
MS.gene006156.t1 | MTR_1g098590 | 96.847 | 222 | 3 | 1 | 1 | 222 | 1 | 218 | 2.31e-152 | 431 |
MS.gene006156.t1 | MTR_1g098590 | 95.964 | 223 | 5 | 1 | 1 | 223 | 1 | 219 | 2.86e-151 | 429 |
MS.gene006156.t1 | MTR_1g098580 | 95.794 | 214 | 7 | 1 | 238 | 449 | 14 | 227 | 7.47e-149 | 423 |
MS.gene006156.t1 | MTR_1g098580 | 96.135 | 207 | 6 | 1 | 238 | 442 | 14 | 220 | 1.54e-143 | 410 |
MS.gene006156.t1 | MTR_1g098580 | 79.358 | 218 | 17 | 2 | 227 | 442 | 3 | 194 | 3.60e-107 | 316 |
MS.gene006156.t1 | MTR_4g094390 | 40.722 | 194 | 57 | 5 | 44 | 222 | 36 | 186 | 3.17e-23 | 97.1 |
MS.gene006156.t1 | MTR_8g043960 | 31.064 | 235 | 133 | 4 | 28 | 243 | 85 | 309 | 2.36e-16 | 80.1 |
MS.gene006156.t1 | MTR_3g101780 | 53.750 | 80 | 31 | 2 | 147 | 223 | 336 | 412 | 4.46e-15 | 77.4 |
MS.gene006156.t1 | MTR_2g086390 | 33.168 | 202 | 101 | 9 | 42 | 225 | 84 | 269 | 1.68e-14 | 74.3 |
MS.gene006156.t1 | MTR_4g085910 | 56.250 | 64 | 24 | 1 | 150 | 213 | 289 | 348 | 2.82e-13 | 71.6 |
MS.gene006156.t1 | MTR_3g010660 | 56.452 | 62 | 27 | 0 | 150 | 211 | 235 | 296 | 4.92e-13 | 70.1 |
MS.gene006156.t1 | MTR_5g088230 | 35.602 | 191 | 78 | 7 | 32 | 211 | 82 | 238 | 1.09e-12 | 68.6 |
MS.gene006156.t1 | MTR_5g088230 | 35.602 | 191 | 78 | 7 | 32 | 211 | 87 | 243 | 1.28e-12 | 68.2 |
MS.gene006156.t1 | MTR_2g086390 | 35.000 | 180 | 91 | 7 | 42 | 207 | 84 | 251 | 1.95e-12 | 68.2 |
MS.gene006156.t1 | MTR_7g088090 | 48.235 | 85 | 30 | 2 | 161 | 243 | 244 | 316 | 1.49e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006156.t1 | AT1G21090 | 53.398 | 206 | 82 | 5 | 238 | 437 | 22 | 219 | 1.49e-63 | 206 |
MS.gene006156.t1 | AT1G21090 | 53.398 | 206 | 82 | 5 | 238 | 437 | 22 | 219 | 3.87e-63 | 204 |
MS.gene006156.t1 | AT5G44080 | 48.221 | 253 | 93 | 8 | 2 | 242 | 84 | 310 | 1.13e-59 | 198 |
MS.gene006156.t1 | AT1G03970 | 49.351 | 231 | 82 | 8 | 22 | 245 | 65 | 267 | 7.49e-50 | 171 |
MS.gene006156.t1 | AT2G36270 | 49.000 | 100 | 48 | 2 | 127 | 226 | 320 | 416 | 7.16e-16 | 79.7 |
MS.gene006156.t1 | AT2G36270 | 49.000 | 100 | 48 | 2 | 127 | 226 | 320 | 416 | 7.16e-16 | 79.7 |
MS.gene006156.t1 | AT2G36270 | 50.000 | 96 | 45 | 2 | 127 | 222 | 320 | 412 | 1.53e-15 | 79.0 |
MS.gene006156.t1 | AT1G45249 | 47.525 | 101 | 41 | 3 | 144 | 241 | 319 | 410 | 3.57e-15 | 77.8 |
MS.gene006156.t1 | AT1G45249 | 47.525 | 101 | 41 | 3 | 144 | 241 | 334 | 425 | 4.46e-15 | 77.4 |
MS.gene006156.t1 | AT1G45249 | 47.525 | 101 | 41 | 3 | 144 | 241 | 334 | 425 | 4.46e-15 | 77.4 |
MS.gene006156.t1 | AT3G56850 | 50.588 | 85 | 32 | 1 | 159 | 243 | 219 | 293 | 4.94e-14 | 72.8 |
MS.gene006156.t1 | AT3G19290 | 53.425 | 73 | 30 | 1 | 153 | 221 | 339 | 411 | 4.87e-13 | 71.2 |
MS.gene006156.t1 | AT4G34000 | 50.000 | 72 | 36 | 0 | 153 | 224 | 360 | 431 | 5.82e-13 | 70.9 |
MS.gene006156.t1 | AT4G34000 | 50.000 | 72 | 36 | 0 | 153 | 224 | 360 | 431 | 5.82e-13 | 70.9 |
MS.gene006156.t1 | AT4G34000 | 50.000 | 72 | 36 | 0 | 153 | 224 | 360 | 431 | 5.82e-13 | 70.9 |
MS.gene006156.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 153 | 213 | 339 | 399 | 6.53e-13 | 70.5 |
MS.gene006156.t1 | AT3G19290 | 52.778 | 72 | 34 | 0 | 153 | 224 | 339 | 410 | 8.76e-13 | 70.5 |
MS.gene006156.t1 | AT3G19290 | 52.778 | 72 | 34 | 0 | 153 | 224 | 339 | 410 | 8.76e-13 | 70.5 |
MS.gene006156.t1 | AT2G41070 | 32.000 | 200 | 91 | 8 | 42 | 228 | 85 | 252 | 1.00e-12 | 68.6 |
MS.gene006156.t1 | AT2G41070 | 32.000 | 200 | 91 | 8 | 42 | 228 | 76 | 243 | 1.22e-12 | 68.2 |
MS.gene006156.t1 | AT2G41070 | 32.000 | 200 | 91 | 8 | 42 | 228 | 76 | 243 | 1.22e-12 | 68.2 |
MS.gene006156.t1 | AT2G41070 | 32.000 | 200 | 91 | 8 | 42 | 228 | 76 | 243 | 1.22e-12 | 68.2 |
MS.gene006156.t1 | AT1G49720 | 47.253 | 91 | 43 | 2 | 153 | 241 | 299 | 386 | 1.30e-12 | 69.7 |
MS.gene006156.t1 | AT1G49720 | 47.253 | 91 | 43 | 2 | 153 | 241 | 299 | 386 | 1.30e-12 | 69.7 |
MS.gene006156.t1 | AT1G45249 | 42.857 | 112 | 41 | 4 | 144 | 241 | 319 | 421 | 1.48e-12 | 69.7 |
MS.gene006156.t1 | AT2G41070 | 33.511 | 188 | 88 | 7 | 40 | 213 | 74 | 238 | 2.48e-12 | 67.0 |
MS.gene006156.t1 | AT4G34000 | 43.902 | 82 | 39 | 1 | 153 | 227 | 360 | 441 | 1.07e-11 | 67.0 |
MS.gene006156.t1 | AT1G49720 | 54.688 | 64 | 29 | 0 | 153 | 216 | 299 | 362 | 1.46e-11 | 66.2 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGAGATTGAAGGCTTTC+TGG | 0.152433 | 1.4:+76666664 | None:intergenic |
CAAAGAGTGAGAGAAGAGTA+TGG | 0.286059 | 1.4:+76666079 | None:intergenic |
TCCACCACAATTCTTGTTGA+TGG | 0.315465 | 1.4:-76666852 | MS.gene006156:CDS |
GTTATTGGTGAACTTGCTTC+TGG | 0.318387 | 1.4:+76666242 | None:intergenic |
CTTGCTTCTGGTGTTGGTGC+TGG | 0.326503 | 1.4:+76666254 | None:intergenic |
GAAGATGACGATTCCGTTAT+CGG | 0.332969 | 1.4:-76673998 | MS.gene006156:CDS |
TTATCCAATTGCTCCATAAC+AGG | 0.338573 | 1.4:+76673811 | None:intergenic |
GGTACTAATGGAAGTGTTAT+TGG | 0.342544 | 1.4:+76666227 | None:intergenic |
CAAGGAATTGAAAACGTTGA+TGG | 0.345371 | 1.4:-76673931 | MS.gene006156:CDS |
GATTTGATCGTCGAGGAAAT+TGG | 0.346078 | 1.4:+76674203 | None:intergenic |
AACGTTGATGGGTCGGTGAT+AGG | 0.356163 | 1.4:-76673919 | MS.gene006156:CDS |
GATGGGTCGGTGATAGGGTT+TGG | 0.356739 | 1.4:-76673913 | MS.gene006156:CDS |
CGGTGATAGGGTTTGGGAAT+GGG | 0.358384 | 1.4:-76673906 | MS.gene006156:CDS |
CTACCTTTGTATGGTACTAA+TGG | 0.361276 | 1.4:+76666215 | None:intergenic |
GTGGAAATGGTTGAAGGTGG+GGG | 0.368454 | 1.4:-76673853 | MS.gene006156:CDS |
TTCTCAGAAGCTAGCCATAA+AGG | 0.371391 | 1.4:-76666414 | MS.gene006156:CDS |
CTCGAACCGTCGACGATGTC+TGG | 0.371504 | 1.4:-76674155 | MS.gene006156:CDS |
TTTGAAGGGTCTTACTGTAT+AGG | 0.375229 | 1.4:+76666599 | None:intergenic |
ATGGGTCGGTGATAGGGTTT+GGG | 0.380377 | 1.4:-76673912 | MS.gene006156:CDS |
GGCCTTCGCTGCTCCACAAC+AGG | 0.380747 | 1.4:+76669927 | None:intergenic |
ACTACTCCAGGTCCTTCTTC+AGG | 0.382607 | 1.4:-76666344 | MS.gene006156:CDS |
TTAGGCTTATCAAGTGGAAT+TGG | 0.384866 | 1.4:-76673487 | MS.gene006156:intron |
AGTGAAATTGCAGAGATTGA+AGG | 0.384961 | 1.4:+76666656 | None:intergenic |
GAAGAGAGGACGGCCTGTTA+TGG | 0.389128 | 1.4:-76673824 | MS.gene006156:CDS |
GGTGAACTTGCTTCTGGTGT+TGG | 0.389269 | 1.4:+76666248 | None:intergenic |
ATGGCAATGGGAATGTGAAT+GGG | 0.390238 | 1.4:-76673876 | MS.gene006156:CDS |
GGGGTGGAAATGGTTGAAGG+TGG | 0.394857 | 1.4:-76673856 | MS.gene006156:CDS |
ACAAGCCTTGAGTGAGTCAT+TGG | 0.395814 | 1.4:+76666442 | None:intergenic |
TGTGCAGGCTGAGAGGAAAA+AGG | 0.400339 | 1.4:-76672497 | MS.gene006156:intron |
CAGTGGCACCCTTCTCGTGT+TGG | 0.410518 | 1.4:-76666485 | MS.gene006156:CDS |
GGTGGAAATGGTTGAAGGTG+GGG | 0.410518 | 1.4:-76673854 | MS.gene006156:CDS |
GAGAATCTGCTGCTAGGTCT+AGG | 0.414539 | 1.4:-76673750 | MS.gene006156:CDS |
TGAGGATGAGGAGGAGGGTG+AGG | 0.414838 | 1.4:-76674025 | MS.gene006156:CDS |
TCTGGTGTTGGTGCTGGACC+TGG | 0.421352 | 1.4:+76666260 | None:intergenic |
TCGGTGATAGGGTTTGGGAA+TGG | 0.430970 | 1.4:-76673907 | MS.gene006156:CDS |
GAATGTGAATGGGGTGGAAA+TGG | 0.432712 | 1.4:-76673866 | MS.gene006156:CDS |
GCGGTGGTGAAGTGAGGTTT+AGG | 0.434316 | 1.4:+76674225 | None:intergenic |
AATGGCAATGGGAATGTGAA+TGG | 0.440487 | 1.4:-76673877 | MS.gene006156:CDS |
GGCATTGGTGAAGAAGCTTC+TGG | 0.441866 | 1.4:+76666368 | None:intergenic |
ACGGCCTGTTATGGAGCAAT+TGG | 0.442422 | 1.4:-76673815 | MS.gene006156:CDS |
TAGGGTTTGGGAATGGGAAT+GGG | 0.448106 | 1.4:-76673900 | MS.gene006156:CDS |
ATGGGAATGGGAATGGCAAT+GGG | 0.449145 | 1.4:-76673888 | MS.gene006156:CDS |
AATCTTCTCCTTCATTTCCA+TGG | 0.462730 | 1.4:-76666310 | MS.gene006156:CDS |
AATGGGAATGGGAATGGCAA+TGG | 0.463203 | 1.4:-76673889 | MS.gene006156:CDS |
GAACCTTGGTGAGGACGAAA+TGG | 0.464009 | 1.4:+76666287 | None:intergenic |
CCACTGAGCGTCTCCGATAA+CGG | 0.464675 | 1.4:+76673985 | None:intergenic |
TGCGGTTGAGGATGAGGAGG+AGG | 0.464821 | 1.4:-76674031 | MS.gene006156:CDS |
ATAGGGTTTGGGAATGGGAA+TGG | 0.466638 | 1.4:-76673901 | MS.gene006156:CDS |
TGGAAATGGTTGAAGGTGGG+GGG | 0.467922 | 1.4:-76673852 | MS.gene006156:CDS |
ACGTTGATGGGTCGGTGATA+GGG | 0.467935 | 1.4:-76673918 | MS.gene006156:CDS |
CGAAATGGCCATGGAAATGA+AGG | 0.472315 | 1.4:+76666302 | None:intergenic |
TCAAGTGGAATTGGAGTCCT+TGG | 0.472571 | 1.4:-76673478 | MS.gene006156:CDS |
CCATCACCACTACCTTTGTA+TGG | 0.475205 | 1.4:+76666206 | None:intergenic |
AGATGGAGAAGAAGGTGGAT+CGG | 0.476558 | 1.4:+76674248 | None:intergenic |
GGGTGGAAATGGTTGAAGGT+GGG | 0.482957 | 1.4:-76673855 | MS.gene006156:CDS |
TGTGAAAGCTGGTGCGGTTG+AGG | 0.485583 | 1.4:-76674043 | MS.gene006156:CDS |
GGTTTAGGAGATGGAGAAGA+AGG | 0.490179 | 1.4:+76674240 | None:intergenic |
TGACAAGTTGATGAAGGAAA+AGG | 0.495815 | 1.4:-76673433 | MS.gene006156:intron |
GAAGAAGGACCTGGAGTAGT+TGG | 0.497886 | 1.4:+76666347 | None:intergenic |
GTGAAGTGAGGTTTAGGAGA+TGG | 0.499875 | 1.4:+76674231 | None:intergenic |
TAGGTCTAGGGAACGCAAGC+AGG | 0.503430 | 1.4:-76673737 | MS.gene006156:intron |
CCAGTAGGTAGAGGAACTGC+AGG | 0.504828 | 1.4:+76666161 | None:intergenic |
TCGAGGAGTGGCGACGGCGT+CGG | 0.506745 | 1.4:+76674173 | None:intergenic |
TTTGGGAATGGGAATGGGAA+TGG | 0.507407 | 1.4:-76673895 | MS.gene006156:CDS |
GGAAAATGACAAGTTGATGA+AGG | 0.507651 | 1.4:-76673439 | MS.gene006156:CDS |
AGCTGGTGCGGTTGAGGATG+AGG | 0.510481 | 1.4:-76674037 | MS.gene006156:CDS |
GCGATGTGATCTCCGGCGAT+AGG | 0.515092 | 1.4:-76674116 | MS.gene006156:CDS |
AATGGGGTGGAAATGGTTGA+AGG | 0.515608 | 1.4:-76673859 | MS.gene006156:CDS |
TTCTTTACACTCCCTATCGC+CGG | 0.515808 | 1.4:+76674104 | None:intergenic |
TACTTCTGGTCATCAAGGAC+AGG | 0.518066 | 1.4:-76666105 | MS.gene006156:CDS |
TCACCAATGCCAACTACTCC+AGG | 0.520351 | 1.4:-76666356 | MS.gene006156:CDS |
GAGTGGCGACGGCGTCGGCG+AGG | 0.520677 | 1.4:+76674178 | None:intergenic |
ATCGGAAGAAGGCATGAGCT+TGG | 0.521805 | 1.4:+76674266 | None:intergenic |
AAGGAATTGAAAACGTTGAT+GGG | 0.523079 | 1.4:-76673930 | MS.gene006156:CDS |
CGATGTGATCTCCGGCGATA+GGG | 0.523997 | 1.4:-76674115 | MS.gene006156:CDS |
TCGGAGACGCTCAGTGGTAG+TGG | 0.524000 | 1.4:-76673979 | MS.gene006156:CDS |
GTCGCCGGCGATGTGATCTC+CGG | 0.529993 | 1.4:-76674123 | MS.gene006156:CDS |
GAAGAAGGTGGATCGGAAGA+AGG | 0.530586 | 1.4:+76674255 | None:intergenic |
TTAGGAGATGGAGAAGAAGG+TGG | 0.530669 | 1.4:+76674243 | None:intergenic |
TGGCAATGGGAATGTGAATG+GGG | 0.531390 | 1.4:-76673875 | MS.gene006156:CDS |
CCTGCAGTTCCTCTACCTAC+TGG | 0.533665 | 1.4:-76666161 | MS.gene006156:CDS |
CTCCTCTAGCTTCACCGCCA+AGG | 0.538630 | 1.4:+76673461 | None:intergenic |
GCTAGGATCAGTGAGAAGAT+TGG | 0.542002 | 1.4:+76666629 | None:intergenic |
AAATTGGCGGTGGTGAAGTG+AGG | 0.542267 | 1.4:+76674219 | None:intergenic |
GCCGCCACGGTTACTCCGTA+GGG | 0.544674 | 1.4:-76669907 | MS.gene006156:intron |
CTTGCTACTTCTGGTCATCA+AGG | 0.545692 | 1.4:-76666110 | MS.gene006156:CDS |
CCATACAAAGGTAGTGGTGA+TGG | 0.547473 | 1.4:-76666206 | MS.gene006156:CDS |
TGTATATCTCCACCTGAAGA+AGG | 0.549316 | 1.4:+76666332 | None:intergenic |
CCTCACCAAGGTTCTTCACC+AGG | 0.550909 | 1.4:-76666278 | MS.gene006156:CDS |
GCGGTTGAGGATGAGGAGGA+GGG | 0.553341 | 1.4:-76674030 | MS.gene006156:CDS |
AAGAACCCCACTGTTTCCAT+TGG | 0.557299 | 1.4:-76666816 | MS.gene006156:CDS |
CGATGAGATGATGACGCTGG+AGG | 0.560524 | 1.4:-76674073 | MS.gene006156:CDS |
CATGAGCTTGGAAGAAGCCA+TGG | 0.560742 | 1.4:+76674278 | None:intergenic |
AGAATCTGCTGCTAGGTCTA+GGG | 0.563610 | 1.4:-76673749 | MS.gene006156:CDS |
GAAGGGTCTTACTGTATAGG+AGG | 0.563707 | 1.4:+76666602 | None:intergenic |
TTCCTGTTGTGGAGCAGCGA+AGG | 0.563922 | 1.4:-76669929 | MS.gene006156:CDS |
GGCCGCCACGGTTACTCCGT+AGG | 0.566727 | 1.4:-76669908 | MS.gene006156:CDS |
TCTGGTTCTTGAAAATGTAG+AGG | 0.568108 | 1.4:+76666682 | None:intergenic |
CTGGACCTGGTGAAGAACCT+TGG | 0.569624 | 1.4:+76666273 | None:intergenic |
ATCGTCGAGGAAATTGGCGG+TGG | 0.569885 | 1.4:+76674209 | None:intergenic |
GGACCTGGAGTAGTTGGCAT+TGG | 0.570624 | 1.4:+76666353 | None:intergenic |
CTTACTGATGGAATCACCAA+TGG | 0.572310 | 1.4:+76666800 | None:intergenic |
AGAATAGAGAATCTGCTGCT+AGG | 0.572500 | 1.4:-76673756 | MS.gene006156:CDS |
CTCCAGCGTCATCATCTCAT+CGG | 0.572527 | 1.4:+76674074 | None:intergenic |
AGTGGCGACGGCGTCGGCGA+GGG | 0.573280 | 1.4:+76674179 | None:intergenic |
ATCGTCGACGGTTCGAGGAG+TGG | 0.573362 | 1.4:+76674161 | None:intergenic |
CAGACATCGTCGACGGTTCG+AGG | 0.576404 | 1.4:+76674156 | None:intergenic |
AAAGAGTGAGAGAAGAGTAT+GGG | 0.577010 | 1.4:+76666080 | None:intergenic |
ACTGTATAGGAGGTAGTGCT+AGG | 0.580442 | 1.4:+76666612 | None:intergenic |
GACGGTTCGAGGAGTGGCGA+CGG | 0.580962 | 1.4:+76674167 | None:intergenic |
TGGTGAGGACGAAATGGCCA+TGG | 0.581170 | 1.4:+76666293 | None:intergenic |
TTAGTACCATACAAAGGTAG+TGG | 0.581801 | 1.4:-76666212 | MS.gene006156:CDS |
CTTGAGTGAGTCATTGGAGA+AGG | 0.585494 | 1.4:+76666448 | None:intergenic |
AATTGAAAACGTTGATGGGT+CGG | 0.585668 | 1.4:-76673926 | MS.gene006156:CDS |
GAATCACCAATGGAAACAGT+GGG | 0.586434 | 1.4:+76666810 | None:intergenic |
CTTGATGACCAGAAGTAGCA+AGG | 0.589614 | 1.4:+76666111 | None:intergenic |
GTCTGGCGAGAGATCGTCGC+CGG | 0.590254 | 1.4:-76674138 | MS.gene006156:CDS |
TCTCCACCTGAAGAAGGACC+TGG | 0.590998 | 1.4:+76666338 | None:intergenic |
AAGCTGCTCAGCAGAGACAG+AGG | 0.593315 | 1.4:-76673789 | MS.gene006156:CDS |
TTGATGACCAGAAGTAGCAA+GGG | 0.596636 | 1.4:+76666112 | None:intergenic |
TCCATCAACAAGAATTGTGG+TGG | 0.597986 | 1.4:+76666851 | None:intergenic |
GCAGAATCAACTTCACCAGT+AGG | 0.602877 | 1.4:+76666146 | None:intergenic |
TTGATCGTCGAGGAAATTGG+CGG | 0.607652 | 1.4:+76674206 | None:intergenic |
ATCGCCGGAGATCACATCGC+CGG | 0.608850 | 1.4:+76674119 | None:intergenic |
GGAATCACCAATGGAAACAG+TGG | 0.609209 | 1.4:+76666809 | None:intergenic |
TTCCGATGAGATGATGACGC+TGG | 0.609887 | 1.4:-76674076 | MS.gene006156:CDS |
TCAACTTCACCAGTAGGTAG+AGG | 0.610264 | 1.4:+76666152 | None:intergenic |
CTCTCGCCAGACATCGTCGA+CGG | 0.611545 | 1.4:+76674149 | None:intergenic |
CAATGGGAATGTGAATGGGG+TGG | 0.612710 | 1.4:-76673872 | MS.gene006156:CDS |
TGGAGCAGCGAAGGCCGCCA+CGG | 0.612735 | 1.4:-76669920 | MS.gene006156:CDS |
CTTCTCCAATGACTCACTCA+AGG | 0.618317 | 1.4:-76666447 | MS.gene006156:CDS |
AGTGGAATTGGAGTCCTTGG+CGG | 0.619638 | 1.4:-76673475 | MS.gene006156:CDS |
AGATCCATCAACAAGAATTG+TGG | 0.619785 | 1.4:+76666848 | None:intergenic |
GTCCTTGGCGGTGAAGCTAG+AGG | 0.622234 | 1.4:-76673463 | MS.gene006156:CDS |
GCAGGGTTACTGTTAATGAA+AGG | 0.625640 | 1.4:+76666179 | None:intergenic |
TGGCCATTTCGTCCTCACCA+AGG | 0.633338 | 1.4:-76666290 | MS.gene006156:CDS |
CCGTTATCGGAGACGCTCAG+TGG | 0.634758 | 1.4:-76673985 | MS.gene006156:CDS |
ATATTCTTGTGCAGGCTGAG+AGG | 0.635094 | 1.4:-76672504 | MS.gene006156:intron |
ACTCCAGGTCCTTCTTCAGG+TGG | 0.643588 | 1.4:-76666341 | MS.gene006156:CDS |
TGGTGCGGTTGAGGATGAGG+AGG | 0.665882 | 1.4:-76674034 | MS.gene006156:CDS |
CGAGGGAGATTTGATCGTCG+AGG | 0.673387 | 1.4:+76674196 | None:intergenic |
TTGTTGATGGATCTTCAGAG+TGG | 0.678120 | 1.4:-76666839 | MS.gene006156:CDS |
TGATGACCAGAAGTAGCAAG+GGG | 0.680310 | 1.4:+76666113 | None:intergenic |
CTTCCATTAGTACCATACAA+AGG | 0.688022 | 1.4:-76666218 | MS.gene006156:CDS |
CTTGGCGGTGAAGCTAGAGG+AGG | 0.703301 | 1.4:-76673460 | MS.gene006156:CDS |
CGAACCCTACGGAGTAACCG+TGG | 0.709737 | 1.4:+76669903 | None:intergenic |
CAGTAGGTAGAGGAACTGCA+GGG | 0.724749 | 1.4:+76666162 | None:intergenic |
ACCCTACGGAGTAACCGTGG+CGG | 0.761547 | 1.4:+76669906 | None:intergenic |
CCTGGTGAAGAACCTTGGTG+AGG | 0.764235 | 1.4:+76666278 | None:intergenic |
AATCACCAATGGAAACAGTG+GGG | 0.793032 | 1.4:+76666811 | None:intergenic |
GATGACCAGAAGTAGCAAGG+GGG | 0.807895 | 1.4:+76666114 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 76666070 | 76674298 | 76666070 | ID=MS.gene006156 |
chr1.4 | mRNA | 76666070 | 76674298 | 76666070 | ID=MS.gene006156.t1;Parent=MS.gene006156 |
chr1.4 | exon | 76673738 | 76674298 | 76673738 | ID=MS.gene006156.t1.exon1;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76673738 | 76674298 | 76673738 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76673434 | 76673505 | 76673434 | ID=MS.gene006156.t1.exon2;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76673434 | 76673505 | 76673434 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76672483 | 76672512 | 76672483 | ID=MS.gene006156.t1.exon3;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76672483 | 76672512 | 76672483 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76669908 | 76669967 | 76669908 | ID=MS.gene006156.t1.exon4;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76669908 | 76669967 | 76669908 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76666805 | 76666883 | 76666805 | ID=MS.gene006156.t1.exon5;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76666805 | 76666883 | 76666805 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76666614 | 76666729 | 76666614 | ID=MS.gene006156.t1.exon6;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76666614 | 76666729 | 76666614 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
chr1.4 | exon | 76666070 | 76666504 | 76666070 | ID=MS.gene006156.t1.exon7;Parent=MS.gene006156.t1 |
chr1.4 | CDS | 76666070 | 76666504 | 76666070 | ID=cds.MS.gene006156.t1;Parent=MS.gene006156.t1 |
Gene Sequence |
Protein sequence |