Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006171.t1 | XP_003592112.1 | 87.3 | 505 | 61 | 1 | 1 | 505 | 1 | 502 | 4.00E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006171.t1 | Q39117 | 55.5 | 494 | 170 | 6 | 21 | 468 | 1 | 490 | 7.4e-97 | 355.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006171.t1 | G7ICY9 | 87.3 | 505 | 61 | 1 | 1 | 505 | 1 | 502 | 2.9e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006171.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006171.t1 | MTR_1g098870 | 96.640 | 506 | 14 | 1 | 1 | 506 | 1 | 503 | 0.0 | 1018 |
| MS.gene006171.t1 | MTR_1g098900 | 45.710 | 606 | 208 | 15 | 3 | 505 | 2 | 589 | 1.71e-153 | 452 |
| MS.gene006171.t1 | MTR_6g035370 | 53.819 | 288 | 112 | 3 | 52 | 318 | 52 | 339 | 4.99e-74 | 246 |
| MS.gene006171.t1 | MTR_6g035370 | 62.879 | 132 | 43 | 2 | 363 | 491 | 449 | 577 | 2.77e-46 | 171 |
| MS.gene006171.t1 | MTR_6g035370 | 43.617 | 94 | 52 | 1 | 51 | 143 | 460 | 553 | 1.25e-18 | 89.7 |
| MS.gene006171.t1 | MTR_6g035370 | 41.379 | 87 | 50 | 1 | 375 | 461 | 55 | 140 | 3.37e-17 | 85.1 |
| MS.gene006171.t1 | MTR_1g492790 | 30.118 | 425 | 222 | 13 | 36 | 432 | 95 | 472 | 2.55e-47 | 171 |
| MS.gene006171.t1 | MTR_1g492790 | 38.129 | 139 | 81 | 3 | 329 | 466 | 71 | 205 | 3.91e-20 | 93.6 |
| MS.gene006171.t1 | MTR_2g026725 | 37.705 | 244 | 124 | 4 | 240 | 463 | 115 | 350 | 4.85e-44 | 160 |
| MS.gene006171.t1 | MTR_2g026725 | 39.091 | 110 | 59 | 2 | 54 | 162 | 261 | 363 | 5.21e-16 | 80.1 |
| MS.gene006171.t1 | MTR_1g081180 | 31.072 | 457 | 212 | 12 | 56 | 462 | 104 | 507 | 7.16e-43 | 160 |
| MS.gene006171.t1 | MTR_1g081180 | 37.273 | 110 | 66 | 2 | 53 | 159 | 416 | 525 | 6.36e-14 | 74.7 |
| MS.gene006171.t1 | MTR_1g060990 | 34.014 | 294 | 162 | 6 | 55 | 343 | 131 | 397 | 1.88e-41 | 155 |
| MS.gene006171.t1 | MTR_1g060990 | 44.118 | 102 | 55 | 2 | 364 | 464 | 120 | 220 | 3.73e-20 | 94.0 |
| MS.gene006171.t1 | MTR_7g114860 | 31.174 | 247 | 142 | 7 | 240 | 465 | 241 | 480 | 1.17e-29 | 122 |
| MS.gene006171.t1 | MTR_7g114860 | 43.434 | 99 | 46 | 2 | 55 | 143 | 381 | 479 | 5.08e-16 | 80.9 |
| MS.gene006171.t1 | MTR_5g026540 | 30.075 | 133 | 81 | 3 | 335 | 465 | 10 | 132 | 1.56e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006171.t1 | AT1G76890 | 49.593 | 492 | 182 | 10 | 50 | 496 | 36 | 506 | 1.29e-141 | 420 |
| MS.gene006171.t1 | AT1G76880 | 52.183 | 481 | 194 | 8 | 50 | 497 | 56 | 533 | 1.08e-137 | 410 |
| MS.gene006171.t1 | AT5G03680 | 33.641 | 434 | 242 | 12 | 55 | 470 | 119 | 524 | 9.63e-61 | 210 |
| MS.gene006171.t1 | AT5G28300 | 37.838 | 259 | 127 | 6 | 240 | 464 | 300 | 558 | 4.99e-40 | 153 |
| MS.gene006171.t1 | AT3G10000 | 31.953 | 338 | 164 | 10 | 12 | 326 | 56 | 350 | 5.83e-39 | 148 |
| MS.gene006171.t1 | AT3G10000 | 35.915 | 142 | 81 | 3 | 343 | 477 | 53 | 191 | 4.20e-21 | 96.7 |
| MS.gene006171.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 435 | 525 | 8.35e-38 | 147 |
| MS.gene006171.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 396 | 486 | 1.03e-37 | 147 |
| MS.gene006171.t1 | AT1G33240 | 43.678 | 87 | 48 | 1 | 55 | 140 | 396 | 482 | 1.83e-16 | 82.8 |
| MS.gene006171.t1 | AT1G33240 | 68.132 | 91 | 29 | 0 | 375 | 465 | 435 | 525 | 1.67e-37 | 146 |
| MS.gene006171.t1 | AT3G10000 | 30.861 | 337 | 159 | 10 | 12 | 326 | 56 | 340 | 3.44e-35 | 137 |
| MS.gene006171.t1 | AT3G10000 | 34.043 | 141 | 75 | 3 | 343 | 477 | 53 | 181 | 5.12e-18 | 87.0 |
| MS.gene006171.t1 | AT5G47660 | 31.718 | 227 | 140 | 4 | 238 | 463 | 177 | 389 | 1.13e-27 | 115 |
| MS.gene006171.t1 | AT5G47660 | 41.304 | 92 | 51 | 2 | 55 | 145 | 303 | 392 | 3.55e-13 | 71.6 |
| MS.gene006171.t1 | AT3G25990 | 32.000 | 100 | 67 | 1 | 376 | 474 | 55 | 154 | 5.38e-11 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATAGAAAGAAGAGAAAA+TGG | 0.189121 | 1.4:+76852378 | MS.gene006171:CDS |
| GAACCAAAGTATCAAGAAAA+TGG | 0.192524 | 1.4:+76852857 | MS.gene006171:CDS |
| TTCATGTTTGGCAAAGAATT+TGG | 0.196846 | 1.4:-76852287 | None:intergenic |
| TTATTATTTGGTTGTGGTTT+TGG | 0.205052 | 1.4:-76852134 | None:intergenic |
| GAAAATGGAAGGACTATTTC+AGG | 0.211748 | 1.4:+76852393 | MS.gene006171:CDS |
| GGAGGTCTCCATTGTTGTTC+TGG | 0.263104 | 1.4:-76853160 | None:intergenic |
| TCTTCCCACAATGGTGCTTT+TGG | 0.285818 | 1.4:-76852881 | None:intergenic |
| GAATTTCAAAATATGAATAA+TGG | 0.294434 | 1.4:+76852743 | MS.gene006171:CDS |
| GAGCTGCTGATGATCTTTCT+TGG | 0.298176 | 1.4:-76852568 | None:intergenic |
| GTGAAGTTCATGCTCTAATA+AGG | 0.301161 | 1.4:+76852819 | MS.gene006171:CDS |
| GCTTCAAGTTCATTAAAATA+AGG | 0.305695 | 1.4:-76853040 | None:intergenic |
| GATGAGAGTGTGTTATTATT+TGG | 0.316885 | 1.4:-76852146 | None:intergenic |
| TCAAGAGAGCCAATGTTTCT+TGG | 0.332675 | 1.4:-76851058 | None:intergenic |
| GAGAATAGGTTGTTCATGTT+TGG | 0.353362 | 1.4:-76852299 | None:intergenic |
| TTAACGGTGGTGGAGGAAAT+AGG | 0.356278 | 1.4:+76851027 | MS.gene006171:CDS |
| AACTTCTTCTTCCACAGCTT+CGG | 0.361209 | 1.4:+76852337 | MS.gene006171:CDS |
| GAAACGAATTAGAACCAAAA+AGG | 0.368019 | 1.4:-76853093 | None:intergenic |
| TATTGTTTGTGTGGTTTCAT+TGG | 0.368826 | 1.4:-76852183 | None:intergenic |
| CTTGAAGATAAGATCAGATA+TGG | 0.382626 | 1.4:+76851076 | MS.gene006171:CDS |
| GCTGGCGGTGGTTGTGGTGG+TGG | 0.395680 | 1.4:-76852638 | None:intergenic |
| AAGTCTTAAGGGTCCACTTT+GGG | 0.401378 | 1.4:+76851118 | MS.gene006171:CDS |
| TCTGGTGCTGGCGGTGGTTG+TGG | 0.405288 | 1.4:-76852644 | None:intergenic |
| AACGAATGTGGTAGGGTTTG+TGG | 0.409596 | 1.4:-76852231 | None:intergenic |
| TGAGAATATTGTGCCGGTTA+CGG | 0.409713 | 1.4:+76850929 | MS.gene006171:CDS |
| GAAGAGAAAGGAAGAGAGAT+TGG | 0.412336 | 1.4:+76850972 | MS.gene006171:CDS |
| CACAGCTTCGGACGAAGACT+TGG | 0.417011 | 1.4:+76852349 | MS.gene006171:CDS |
| TGTTCTGGCTGCACCATCAA+TGG | 0.420164 | 1.4:-76853145 | None:intergenic |
| ATTGTTTGTGTGGTTTCATT+GGG | 0.421975 | 1.4:-76852182 | None:intergenic |
| ATGAATAATGGTTACAAAAG+TGG | 0.422836 | 1.4:+76852755 | MS.gene006171:CDS |
| GTTTCATTGGGATTTATTGT+TGG | 0.423348 | 1.4:-76852170 | None:intergenic |
| TGCTTTGAGAATTCAAGAAA+TGG | 0.425606 | 1.4:+76852514 | MS.gene006171:CDS |
| AATTCAACAATGTTGTTGTT+TGG | 0.432386 | 1.4:-76852725 | None:intergenic |
| TTTGGAACATTGTTGTTGTT+AGG | 0.434536 | 1.4:-76852269 | None:intergenic |
| CACTTTGGGAAGAGGTTTCA+AGG | 0.436137 | 1.4:+76851132 | MS.gene006171:CDS |
| GATACAATAGGAATGCAAAA+AGG | 0.443697 | 1.4:+76852930 | MS.gene006171:CDS |
| GACAGCTCTGGTGCTGGCGG+TGG | 0.444859 | 1.4:-76852650 | None:intergenic |
| AAGTTGTTGTGGTTGAGAAT+AGG | 0.446298 | 1.4:-76852313 | None:intergenic |
| AACCAAAGTATCAAGAAAAT+GGG | 0.447699 | 1.4:+76852858 | MS.gene006171:CDS |
| TGAAGAGACAAGGATACAAT+AGG | 0.451641 | 1.4:+76852918 | MS.gene006171:CDS |
| ATCAATATTAACGGTGGTGG+AGG | 0.457605 | 1.4:+76851020 | MS.gene006171:CDS |
| GTGCTTCTCCTTCTCCATCA+AGG | 0.462199 | 1.4:+76852786 | MS.gene006171:CDS |
| GAGAGCCAATGTTTCTTGGC+GGG | 0.464598 | 1.4:-76851054 | None:intergenic |
| AATGGTTACAAAAGTGGTAA+TGG | 0.466799 | 1.4:+76852761 | MS.gene006171:CDS |
| CACGGAGACAGCTCTGGTGC+TGG | 0.472655 | 1.4:-76852656 | None:intergenic |
| TAAGGGTCCACTTTGGGAAG+AGG | 0.472903 | 1.4:+76851124 | MS.gene006171:CDS |
| TTTCGTGATTCAAGTCTTAA+GGG | 0.478392 | 1.4:+76851107 | MS.gene006171:CDS |
| AAGATGAATATCAATATTAA+CGG | 0.478883 | 1.4:+76851011 | MS.gene006171:CDS |
| ACATTGTTGTTGTTAGGTTG+TGG | 0.486612 | 1.4:-76852263 | None:intergenic |
| AGGAAGAGAGATTGGTGGTG+AGG | 0.490326 | 1.4:+76850980 | MS.gene006171:CDS |
| TGAGACGATGGAGCCATTGA+TGG | 0.495814 | 1.4:+76853132 | MS.gene006171:CDS |
| CAAGTCTTAAGGGTCCACTT+TGG | 0.495967 | 1.4:+76851117 | MS.gene006171:CDS |
| ATCTTCTTCTATATGCAGCT+TGG | 0.501249 | 1.4:+76850873 | None:intergenic |
| GGTGCTGGCGGTGGTTGTGG+TGG | 0.502284 | 1.4:-76852641 | None:intergenic |
| GTCTGACACGGAGACAGCTC+TGG | 0.505511 | 1.4:-76852662 | None:intergenic |
| AATATCAATATTAACGGTGG+TGG | 0.506001 | 1.4:+76851017 | MS.gene006171:CDS |
| CCCTCTTCAAATGTAGTTGG+AGG | 0.507603 | 1.4:-76853178 | None:intergenic |
| TGTAGGAAACTAGCTGAACT+TGG | 0.509833 | 1.4:+76851948 | MS.gene006171:intron |
| GTCTCCGTGTCAGACAGCTC+TGG | 0.513072 | 1.4:+76852670 | MS.gene006171:CDS |
| TAGAAAGAAGAGAAAATGGA+AGG | 0.520671 | 1.4:+76852382 | MS.gene006171:CDS |
| GAAGGAGAAACGAATGTGGT+AGG | 0.521206 | 1.4:-76852239 | None:intergenic |
| GTACCCTCTTCAAATGTAGT+TGG | 0.522241 | 1.4:-76853181 | None:intergenic |
| TGGGCCAAAAGCACCATTGT+GGG | 0.525939 | 1.4:+76852877 | MS.gene006171:CDS |
| AGGGTTTGTGGATGGAACAG+TGG | 0.526949 | 1.4:-76852219 | None:intergenic |
| CAAGTCTTCGTCCGAAGCTG+TGG | 0.529430 | 1.4:-76852348 | None:intergenic |
| AGTGTGTTATTATTTGGTTG+TGG | 0.532548 | 1.4:-76852140 | None:intergenic |
| GACATATGATATTGTTTGTG+TGG | 0.533682 | 1.4:-76852192 | None:intergenic |
| GTGCCGGTTACGGCGCAAAA+CGG | 0.534516 | 1.4:+76850939 | MS.gene006171:CDS |
| ACGGCGCAAAACGGAGGCGG+CGG | 0.535961 | 1.4:+76850948 | MS.gene006171:CDS |
| TTTGGCCACCTTGATGGAGA+AGG | 0.538200 | 1.4:-76852794 | None:intergenic |
| TATCACAAAAGAACCAAAGA+AGG | 0.539271 | 1.4:+76852023 | MS.gene006171:CDS |
| CTCCGGTGAGAATATTGTGC+CGG | 0.540412 | 1.4:+76850923 | MS.gene006171:CDS |
| AGAGCCAATGTTTCTTGGCG+GGG | 0.547860 | 1.4:-76851053 | None:intergenic |
| TTGTTGTCACAACTTCATAA+CGG | 0.553559 | 1.4:-76853336 | None:intergenic |
| CTTGAAACCTCTTCCCAAAG+TGG | 0.553632 | 1.4:-76851131 | None:intergenic |
| GGTAGGAGTGGAAAATCAGA+AGG | 0.553996 | 1.4:+76852044 | MS.gene006171:CDS |
| TGGTGATGCAACAGTAATGA+TGG | 0.554542 | 1.4:+76850893 | MS.gene006171:CDS |
| GAGAAAGGAAGAGAGATTGG+TGG | 0.555860 | 1.4:+76850975 | MS.gene006171:CDS |
| TTGTTGTTAGGTTGTGGTGA+AGG | 0.559792 | 1.4:-76852257 | None:intergenic |
| GGAGGCGGCGGTGAAGAGAA+AGG | 0.561124 | 1.4:+76850960 | MS.gene006171:CDS |
| GTTACGGCGCAAAACGGAGG+CGG | 0.565758 | 1.4:+76850945 | MS.gene006171:CDS |
| AGAAGAAGTTGAAGTTGTTG+TGG | 0.571331 | 1.4:-76852324 | None:intergenic |
| AAGGAGAAACGAATGTGGTA+GGG | 0.571339 | 1.4:-76852238 | None:intergenic |
| AGAGAGCCAATGTTTCTTGG+CGG | 0.579042 | 1.4:-76851055 | None:intergenic |
| CAAATACTACAAGAAAATGA+AGG | 0.579174 | 1.4:+76852979 | MS.gene006171:CDS |
| TGAAGGAAAGTAACAAGCAA+AGG | 0.584180 | 1.4:+76852996 | MS.gene006171:CDS |
| GTGGCCCCGCCAAGAAACAT+TGG | 0.588347 | 1.4:+76851049 | MS.gene006171:CDS |
| GGAGACAGCTCTGGTGCTGG+CGG | 0.588687 | 1.4:-76852653 | None:intergenic |
| ATGGGCCAAAAGCACCATTG+TGG | 0.595427 | 1.4:+76852876 | MS.gene006171:CDS |
| AGAACCAAAGAAGGTAGGAG+TGG | 0.596126 | 1.4:+76852032 | MS.gene006171:CDS |
| ACCTCCAACTACATTTGAAG+AGG | 0.596492 | 1.4:+76853177 | MS.gene006171:CDS |
| AAGATAAGATCAGATATGGA+TGG | 0.598844 | 1.4:+76851080 | MS.gene006171:CDS |
| ACAAGTGCTTGCAAAACAAG+AGG | 0.605374 | 1.4:+76852427 | MS.gene006171:CDS |
| GTAATGATGGAGACTTGCTC+CGG | 0.605776 | 1.4:+76850906 | MS.gene006171:CDS |
| TAGAAGCTCAAAGAAGTGCA+AGG | 0.606310 | 1.4:+76851977 | MS.gene006171:CDS |
| ACAAAAGAACCAAAGAAGGT+AGG | 0.608634 | 1.4:+76852027 | MS.gene006171:CDS |
| AACCGGCACAATATTCTCAC+CGG | 0.619642 | 1.4:-76850925 | None:intergenic |
| TGGTGCAGCCAGAACAACAA+TGG | 0.627830 | 1.4:+76853152 | MS.gene006171:CDS |
| CCGGTTACGGCGCAAAACGG+AGG | 0.631559 | 1.4:+76850942 | MS.gene006171:CDS |
| ATGAATATCAATATTAACGG+TGG | 0.649447 | 1.4:+76851014 | MS.gene006171:CDS |
| CCTCCAACTACATTTGAAGA+GGG | 0.651540 | 1.4:+76853178 | MS.gene006171:CDS |
| CATGAAGTCAAATGAGACGA+TGG | 0.663039 | 1.4:+76853120 | MS.gene006171:CDS |
| GGTTACAAAAGTGGTAATGG+TGG | 0.667767 | 1.4:+76852764 | MS.gene006171:CDS |
| GCTGAAATATCTTCCCACAA+TGG | 0.669344 | 1.4:-76852890 | None:intergenic |
| AATGTGGTAGGGTTTGTGGA+TGG | 0.673197 | 1.4:-76852227 | None:intergenic |
| CTTCTCCTTCTCCATCAAGG+TGG | 0.673995 | 1.4:+76852789 | MS.gene006171:CDS |
| TCAGCTGCAATGAAGAGACA+AGG | 0.690286 | 1.4:+76852908 | MS.gene006171:CDS |
| GATGCCAGAGCTGTCTGACA+CGG | 0.707672 | 1.4:-76852674 | None:intergenic |
| TGGTGAAGGAGAAACGAATG+TGG | 0.713404 | 1.4:-76852243 | None:intergenic |
| ACGGTGGTGGAGGAAATAGG+TGG | 0.747281 | 1.4:+76851030 | MS.gene006171:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACTTAAGTAATTTAAT+TGG | - | chr1.4:76851570-76851589 | None:intergenic | 10.0% |
| !! | TTGGTTAATAAAATTATATA+TGG | - | chr1.4:76851551-76851570 | None:intergenic | 10.0% |
| !!! | ATGTGTTTATTTTTTTTTTT+TGG | + | chr1.4:76851708-76851727 | MS.gene006171:intron | 10.0% |
| !! | AAGATGAATATCAATATTAA+CGG | + | chr1.4:76851011-76851030 | MS.gene006171:CDS | 15.0% |
| !! | ACAAAGTAATAAAAATTAGA+TGG | - | chr1.4:76851639-76851658 | None:intergenic | 15.0% |
| !! | GAATTTCAAAATATGAATAA+TGG | + | chr1.4:76852743-76852762 | MS.gene006171:CDS | 15.0% |
| !! | TAATTGATCAAAAAATCTAT+AGG | - | chr1.4:76852075-76852094 | None:intergenic | 15.0% |
| !! | AAAAGTAAAAATTTGTGATG+AGG | - | chr1.4:76851777-76851796 | None:intergenic | 20.0% |
| !! | AGTAATAAAAATTAGATGGA+AGG | - | chr1.4:76851635-76851654 | None:intergenic | 20.0% |
| !! | CTTATAAACAAGAAAATGAA+AGG | - | chr1.4:76851233-76851252 | None:intergenic | 20.0% |
| !! | TACATGTATGTATATATAGA+GGG | - | chr1.4:76851932-76851951 | None:intergenic | 20.0% |
| !!! | TTTGTGTGTTTCTTATTTAT+TGG | + | chr1.4:76851654-76851673 | MS.gene006171:intron | 20.0% |
| !!! | TTTTACTTTTTTTACGTGAA+AGG | + | chr1.4:76851787-76851806 | MS.gene006171:intron | 20.0% |
| !!! | TTTTTCTTTTCCTTTTTCAA+TGG | + | chr1.4:76851818-76851837 | MS.gene006171:intron | 20.0% |
| ! | AAAAATAAACACATGAAGCT+AGG | - | chr1.4:76851702-76851721 | None:intergenic | 25.0% |
| ! | AGTATAGAAAGAAGAGAAAA+TGG | + | chr1.4:76852378-76852397 | MS.gene006171:CDS | 25.0% |
| ! | ATGAATAATGGTTACAAAAG+TGG | + | chr1.4:76852755-76852774 | MS.gene006171:CDS | 25.0% |
| ! | ATGAATATCAATATTAACGG+TGG | + | chr1.4:76851014-76851033 | MS.gene006171:CDS | 25.0% |
| ! | CAAATACTACAAGAAAATGA+AGG | + | chr1.4:76852979-76852998 | MS.gene006171:CDS | 25.0% |
| ! | CTACATGTATGTATATATAG+AGG | - | chr1.4:76851933-76851952 | None:intergenic | 25.0% |
| ! | CTCTATATATACATACATGT+AGG | + | chr1.4:76851931-76851950 | MS.gene006171:intron | 25.0% |
| ! | GTTAGTATATCCATTGAAAA+AGG | - | chr1.4:76851831-76851850 | None:intergenic | 25.0% |
| !! | AAAAAGGTGCAAAGAAAAAT+GGG | + | chr1.4:76852946-76852965 | MS.gene006171:CDS | 25.0% |
| !! | AACCAAAGTATCAAGAAAAT+GGG | + | chr1.4:76852858-76852877 | MS.gene006171:CDS | 25.0% |
| !! | AATTCAACAATGTTGTTGTT+TGG | - | chr1.4:76852728-76852747 | None:intergenic | 25.0% |
| !! | CAAAAACTGATTGGTTAATT+TGG | - | chr1.4:76851296-76851315 | None:intergenic | 25.0% |
| !! | CAAATTAACCAATCAGTTTT+TGG | + | chr1.4:76851294-76851313 | MS.gene006171:intron | 25.0% |
| !! | GCTTCAAGTTCATTAAAATA+AGG | - | chr1.4:76853043-76853062 | None:intergenic | 25.0% |
| !! | TATTTATTGGTCACTCTTTT+AGG | + | chr1.4:76851667-76851686 | MS.gene006171:intron | 25.0% |
| !! | TTATTATTTGGTTGTGGTTT+TGG | - | chr1.4:76852137-76852156 | None:intergenic | 25.0% |
| !! | TTCAGTTATCTTAGATTTTG+AGG | + | chr1.4:76851428-76851447 | MS.gene006171:intron | 25.0% |
| !!! | CATCTTCTTCAACTTTTTTT+AGG | + | chr1.4:76851599-76851618 | MS.gene006171:intron | 25.0% |
| !!! | TTTTTTTTTCCCTTCTGAAA+AGG | + | chr1.4:76851371-76851390 | MS.gene006171:intron | 25.0% |
| AACATGGATGAATATGAAGA+TGG | + | chr1.4:76853277-76853296 | MS.gene006171:intron | 30.0% | |
| AAGATAAGATCAGATATGGA+TGG | + | chr1.4:76851080-76851099 | MS.gene006171:CDS | 30.0% | |
| AATAGGTTCCAAAAACTGAT+TGG | - | chr1.4:76851305-76851324 | None:intergenic | 30.0% | |
| AATATCAATATTAACGGTGG+TGG | + | chr1.4:76851017-76851036 | MS.gene006171:CDS | 30.0% | |
| AATGGTTACAAAAGTGGTAA+TGG | + | chr1.4:76852761-76852780 | MS.gene006171:CDS | 30.0% | |
| ATCTTATTCTCAAGTGTATG+AGG | + | chr1.4:76851399-76851418 | MS.gene006171:intron | 30.0% | |
| ATGTATATATAGAGGGATCA+CGG | - | chr1.4:76851925-76851944 | None:intergenic | 30.0% | |
| ATTGTTTGTGTGGTTTCATT+GGG | - | chr1.4:76852185-76852204 | None:intergenic | 30.0% | |
| CTTGAAGATAAGATCAGATA+TGG | + | chr1.4:76851076-76851095 | MS.gene006171:CDS | 30.0% | |
| GAAACGAATTAGAACCAAAA+AGG | - | chr1.4:76853096-76853115 | None:intergenic | 30.0% | |
| GACATATGATATTGTTTGTG+TGG | - | chr1.4:76852195-76852214 | None:intergenic | 30.0% | |
| GATACAATAGGAATGCAAAA+AGG | + | chr1.4:76852930-76852949 | MS.gene006171:CDS | 30.0% | |
| GTCAAAAAAAGCTCTTTGAT+TGG | + | chr1.4:76851342-76851361 | MS.gene006171:intron | 30.0% | |
| GTTTCATTGGGATTTATTGT+TGG | - | chr1.4:76852173-76852192 | None:intergenic | 30.0% | |
| TAGAAAGAAGAGAAAATGGA+AGG | + | chr1.4:76852382-76852401 | MS.gene006171:CDS | 30.0% | |
| TATCACAAAAGAACCAAAGA+AGG | + | chr1.4:76852023-76852042 | MS.gene006171:CDS | 30.0% | |
| TATTGTTTGTGTGGTTTCAT+TGG | - | chr1.4:76852186-76852205 | None:intergenic | 30.0% | |
| TGATGAAGAAGATGAAAACA+TGG | + | chr1.4:76853261-76853280 | MS.gene006171:intron | 30.0% | |
| TTCATGTTTGGCAAAGAATT+TGG | - | chr1.4:76852290-76852309 | None:intergenic | 30.0% | |
| TTTCGTGATTCAAGTCTTAA+GGG | + | chr1.4:76851107-76851126 | MS.gene006171:CDS | 30.0% | |
| ! | AACAAAACACAGAACCTTTT+TGG | + | chr1.4:76853079-76853098 | MS.gene006171:CDS | 30.0% |
| ! | AAGATATATGCCTTTTCAGA+AGG | - | chr1.4:76851384-76851403 | None:intergenic | 30.0% |
| ! | AGATATATGCCTTTTCAGAA+GGG | - | chr1.4:76851383-76851402 | None:intergenic | 30.0% |
| ! | AGTGTGTTATTATTTGGTTG+TGG | - | chr1.4:76852143-76852162 | None:intergenic | 30.0% |
| ! | CAAAAAGGTGCAAAGAAAAA+TGG | + | chr1.4:76852945-76852964 | MS.gene006171:CDS | 30.0% |
| ! | GAACCAAAGTATCAAGAAAA+TGG | + | chr1.4:76852857-76852876 | MS.gene006171:CDS | 30.0% |
| ! | GATGAGAGTGTGTTATTATT+TGG | - | chr1.4:76852149-76852168 | None:intergenic | 30.0% |
| ! | TTTGGAACATTGTTGTTGTT+AGG | - | chr1.4:76852272-76852291 | None:intergenic | 30.0% |
| ! | TTTTCGTGATTCAAGTCTTA+AGG | + | chr1.4:76851106-76851125 | MS.gene006171:CDS | 30.0% |
| !! | TGCTTTGAGAATTCAAGAAA+TGG | + | chr1.4:76852514-76852533 | MS.gene006171:CDS | 30.0% |
| !! | TTCTTTTTCACGTTTGTCTA+TGG | - | chr1.4:76852477-76852496 | None:intergenic | 30.0% |
| AAGTTGTTGTGGTTGAGAAT+AGG | - | chr1.4:76852316-76852335 | None:intergenic | 35.0% | |
| ACAAAAGAACCAAAGAAGGT+AGG | + | chr1.4:76852027-76852046 | MS.gene006171:CDS | 35.0% | |
| AGAAGAAGTTGAAGTTGTTG+TGG | - | chr1.4:76852327-76852346 | None:intergenic | 35.0% | |
| ATATGAAGATGGAGATAGCA+TGG | + | chr1.4:76853288-76853307 | MS.gene006171:intron | 35.0% | |
| GAAAATGGAAGGACTATTTC+AGG | + | chr1.4:76852393-76852412 | MS.gene006171:CDS | 35.0% | |
| GAGAATAGGTTGTTCATGTT+TGG | - | chr1.4:76852302-76852321 | None:intergenic | 35.0% | |
| GCAAAAGAAGAAGATGACAA+TGG | + | chr1.4:76853229-76853248 | MS.gene006171:intron | 35.0% | |
| GCATTTCTCCAAAAATTGTC+TGG | + | chr1.4:76852611-76852630 | MS.gene006171:CDS | 35.0% | |
| GTGAAGTTCATGCTCTAATA+AGG | + | chr1.4:76852819-76852838 | MS.gene006171:CDS | 35.0% | |
| TGAAGAGACAAGGATACAAT+AGG | + | chr1.4:76852918-76852937 | MS.gene006171:CDS | 35.0% | |
| TGAAGGAAAGTAACAAGCAA+AGG | + | chr1.4:76852996-76853015 | MS.gene006171:CDS | 35.0% | |
| TTCTTCTATCTGAATCTTGC+TGG | + | chr1.4:76851490-76851509 | MS.gene006171:intron | 35.0% | |
| ! | ACATTGTTGTTGTTAGGTTG+TGG | - | chr1.4:76852266-76852285 | None:intergenic | 35.0% |
| !! | AGAGCATGAACTTCACTTTT+TGG | - | chr1.4:76852815-76852834 | None:intergenic | 35.0% |
| !!! | TATTTGGTTGTGGTTTTGGA+TGG | - | chr1.4:76852133-76852152 | None:intergenic | 35.0% |
| AACTTCTTCTTCCACAGCTT+CGG | + | chr1.4:76852337-76852356 | MS.gene006171:CDS | 40.0% | |
| AAGGAGAAACGAATGTGGTA+GGG | - | chr1.4:76852241-76852260 | None:intergenic | 40.0% | |
| AAGTCTTAAGGGTCCACTTT+GGG | + | chr1.4:76851118-76851137 | MS.gene006171:CDS | 40.0% | |
| ACAAGTGCTTGCAAAACAAG+AGG | + | chr1.4:76852427-76852446 | MS.gene006171:CDS | 40.0% | |
| ACCTCCAACTACATTTGAAG+AGG | + | chr1.4:76853177-76853196 | MS.gene006171:CDS | 40.0% | |
| CATGAAGTCAAATGAGACGA+TGG | + | chr1.4:76853120-76853139 | MS.gene006171:CDS | 40.0% | |
| CCTCCAACTACATTTGAAGA+GGG | + | chr1.4:76853178-76853197 | MS.gene006171:CDS | 40.0% | |
| GAAGAGAAAGGAAGAGAGAT+TGG | + | chr1.4:76850972-76850991 | MS.gene006171:CDS | 40.0% | |
| GATAGCATGGAAGAAGATGA+AGG | + | chr1.4:76853301-76853320 | MS.gene006171:intron | 40.0% | |
| GCTGAAATATCTTCCCACAA+TGG | - | chr1.4:76852893-76852912 | None:intergenic | 40.0% | |
| GTACCCTCTTCAAATGTAGT+TGG | - | chr1.4:76853184-76853203 | None:intergenic | 40.0% | |
| TAGTTCCACTGACAGGAAAT+AGG | - | chr1.4:76851322-76851341 | None:intergenic | 40.0% | |
| TCAAGAGAGCCAATGTTTCT+TGG | - | chr1.4:76851061-76851080 | None:intergenic | 40.0% | |
| TGTAGGAAACTAGCTGAACT+TGG | + | chr1.4:76851948-76851967 | MS.gene006171:intron | 40.0% | |
| ! | ATCAATATTAACGGTGGTGG+AGG | + | chr1.4:76851020-76851039 | MS.gene006171:CDS | 40.0% |
| ! | GGCCCATTTTCTTGATACTT+TGG | - | chr1.4:76852863-76852882 | None:intergenic | 40.0% |
| ! | TAGAAGCTCAAAGAAGTGCA+AGG | + | chr1.4:76851977-76851996 | MS.gene006171:CDS | 40.0% |
| ! | TGGTGATGCAACAGTAATGA+TGG | + | chr1.4:76850893-76850912 | MS.gene006171:CDS | 40.0% |
| ! | TTGTTGTTAGGTTGTGGTGA+AGG | - | chr1.4:76852260-76852279 | None:intergenic | 40.0% |
| ! | TTTTCCACTCCTACCTTCTT+TGG | - | chr1.4:76852039-76852058 | None:intergenic | 40.0% |
| !! | GGTTACAAAAGTGGTAATGG+TGG | + | chr1.4:76852764-76852783 | MS.gene006171:CDS | 40.0% |
| !! | TACATTTGAAGAGGGTACTG+TGG | + | chr1.4:76853186-76853205 | MS.gene006171:intron | 40.0% |
| !! | TGAGAATATTGTGCCGGTTA+CGG | + | chr1.4:76850929-76850948 | MS.gene006171:CDS | 40.0% |
| !! | TTTTGACTAGTTCCACTGAC+AGG | - | chr1.4:76851329-76851348 | None:intergenic | 40.0% |
| !!! | TTGTGGTTTTGGATGGTAAG+AGG | - | chr1.4:76852126-76852145 | None:intergenic | 40.0% |
| AACCGGCACAATATTCTCAC+CGG | - | chr1.4:76850928-76850947 | None:intergenic | 45.0% | |
| AACGAATGTGGTAGGGTTTG+TGG | - | chr1.4:76852234-76852253 | None:intergenic | 45.0% | |
| AATGTGGTAGGGTTTGTGGA+TGG | - | chr1.4:76852230-76852249 | None:intergenic | 45.0% | |
| AGAACCAAAGAAGGTAGGAG+TGG | + | chr1.4:76852032-76852051 | MS.gene006171:CDS | 45.0% | |
| AGAGAGCCAATGTTTCTTGG+CGG | - | chr1.4:76851058-76851077 | None:intergenic | 45.0% | |
| AGCATGGAAGAAGATGAAGG+AGG | + | chr1.4:76853304-76853323 | MS.gene006171:intron | 45.0% | |
| CAAGTCTTAAGGGTCCACTT+TGG | + | chr1.4:76851117-76851136 | MS.gene006171:CDS | 45.0% | |
| CCCTCTTCAAATGTAGTTGG+AGG | - | chr1.4:76853181-76853200 | None:intergenic | 45.0% | |
| CTTGAAACCTCTTCCCAAAG+TGG | - | chr1.4:76851134-76851153 | None:intergenic | 45.0% | |
| GAAGGAGAAACGAATGTGGT+AGG | - | chr1.4:76852242-76852261 | None:intergenic | 45.0% | |
| GAGAAAGGAAGAGAGATTGG+TGG | + | chr1.4:76850975-76850994 | MS.gene006171:CDS | 45.0% | |
| GAGCTGCTGATGATCTTTCT+TGG | - | chr1.4:76852571-76852590 | None:intergenic | 45.0% | |
| GGTAGGAGTGGAAAATCAGA+AGG | + | chr1.4:76852044-76852063 | MS.gene006171:CDS | 45.0% | |
| TATAGAGGGATCACGGAAAG+TGG | - | chr1.4:76851918-76851937 | None:intergenic | 45.0% | |
| TCAGCTGCAATGAAGAGACA+AGG | + | chr1.4:76852908-76852927 | MS.gene006171:CDS | 45.0% | |
| TGGAACCTATTTCCTGTCAG+TGG | + | chr1.4:76851314-76851333 | MS.gene006171:intron | 45.0% | |
| TGGTGAAGGAGAAACGAATG+TGG | - | chr1.4:76852246-76852265 | None:intergenic | 45.0% | |
| ! | CACTTTGGGAAGAGGTTTCA+AGG | + | chr1.4:76851132-76851151 | MS.gene006171:CDS | 45.0% |
| ! | GTAATGATGGAGACTTGCTC+CGG | + | chr1.4:76850906-76850925 | MS.gene006171:CDS | 45.0% |
| ! | GTGGCTGTCCAGACAATTTT+TGG | - | chr1.4:76852622-76852641 | None:intergenic | 45.0% |
| ! | TCTTCCCACAATGGTGCTTT+TGG | - | chr1.4:76852884-76852903 | None:intergenic | 45.0% |
| !! | TTAACGGTGGTGGAGGAAAT+AGG | + | chr1.4:76851027-76851046 | MS.gene006171:CDS | 45.0% |
| !!! | TCACTTTTTGGCCACCTTGA+TGG | - | chr1.4:76852803-76852822 | None:intergenic | 45.0% |
| AAGTGGAGGAGACAGAAAGG+AGG | - | chr1.4:76851901-76851920 | None:intergenic | 50.0% | |
| AGAGCCAATGTTTCTTGGCG+GGG | - | chr1.4:76851056-76851075 | None:intergenic | 50.0% | |
| AGGGTTTGTGGATGGAACAG+TGG | - | chr1.4:76852222-76852241 | None:intergenic | 50.0% | |
| CTCCGGTGAGAATATTGTGC+CGG | + | chr1.4:76850923-76850942 | MS.gene006171:CDS | 50.0% | |
| CTTCTCCTTCTCCATCAAGG+TGG | + | chr1.4:76852789-76852808 | MS.gene006171:CDS | 50.0% | |
| GAGAGCCAATGTTTCTTGGC+GGG | - | chr1.4:76851057-76851076 | None:intergenic | 50.0% | |
| GGAAAGTGGAGGAGACAGAA+AGG | - | chr1.4:76851904-76851923 | None:intergenic | 50.0% | |
| GTGCTTCTCCTTCTCCATCA+AGG | + | chr1.4:76852786-76852805 | MS.gene006171:CDS | 50.0% | |
| TGAGACGATGGAGCCATTGA+TGG | + | chr1.4:76853132-76853151 | MS.gene006171:CDS | 50.0% | |
| TGGTGCAGCCAGAACAACAA+TGG | + | chr1.4:76853152-76853171 | MS.gene006171:CDS | 50.0% | |
| TTTGGCCACCTTGATGGAGA+AGG | - | chr1.4:76852797-76852816 | None:intergenic | 50.0% | |
| ! | GGAGGTCTCCATTGTTGTTC+TGG | - | chr1.4:76853163-76853182 | None:intergenic | 50.0% |
| ! | TAAGGGTCCACTTTGGGAAG+AGG | + | chr1.4:76851124-76851143 | MS.gene006171:CDS | 50.0% |
| ! | TGTTCTGGCTGCACCATCAA+TGG | - | chr1.4:76853148-76853167 | None:intergenic | 50.0% |
| !! | AGGAAGAGAGATTGGTGGTG+AGG | + | chr1.4:76850980-76850999 | MS.gene006171:CDS | 50.0% |
| !! | ATGGGCCAAAAGCACCATTG+TGG | + | chr1.4:76852876-76852895 | MS.gene006171:CDS | 50.0% |
| !! | TGGGCCAAAAGCACCATTGT+GGG | + | chr1.4:76852877-76852896 | MS.gene006171:CDS | 50.0% |
| AGAGGGATCACGGAAAGTGG+AGG | - | chr1.4:76851915-76851934 | None:intergenic | 55.0% | |
| CAAGTCTTCGTCCGAAGCTG+TGG | - | chr1.4:76852351-76852370 | None:intergenic | 55.0% | |
| CACAGCTTCGGACGAAGACT+TGG | + | chr1.4:76852349-76852368 | MS.gene006171:CDS | 55.0% | |
| GATGCCAGAGCTGTCTGACA+CGG | - | chr1.4:76852677-76852696 | None:intergenic | 55.0% | |
| !! | ACGGTGGTGGAGGAAATAGG+TGG | + | chr1.4:76851030-76851049 | MS.gene006171:CDS | 55.0% |
| GTCTCCGTGTCAGACAGCTC+TGG | + | chr1.4:76852670-76852689 | MS.gene006171:CDS | 60.0% | |
| GTCTGACACGGAGACAGCTC+TGG | - | chr1.4:76852665-76852684 | None:intergenic | 60.0% | |
| GTGGCCCCGCCAAGAAACAT+TGG | + | chr1.4:76851049-76851068 | MS.gene006171:CDS | 60.0% | |
| GTTACGGCGCAAAACGGAGG+CGG | + | chr1.4:76850945-76850964 | MS.gene006171:CDS | 60.0% | |
| ! | CCTCCGTTTTGCGCCGTAAC+CGG | - | chr1.4:76850945-76850964 | None:intergenic | 60.0% |
| !! | GTGCCGGTTACGGCGCAAAA+CGG | + | chr1.4:76850939-76850958 | MS.gene006171:CDS | 60.0% |
| CCGGTTACGGCGCAAAACGG+AGG | + | chr1.4:76850942-76850961 | MS.gene006171:CDS | 65.0% | |
| GGAGGCGGCGGTGAAGAGAA+AGG | + | chr1.4:76850960-76850979 | MS.gene006171:CDS | 65.0% | |
| ! | CACGGAGACAGCTCTGGTGC+TGG | - | chr1.4:76852659-76852678 | None:intergenic | 65.0% |
| ! | GGAGACAGCTCTGGTGCTGG+CGG | - | chr1.4:76852656-76852675 | None:intergenic | 65.0% |
| !! | TCTGGTGCTGGCGGTGGTTG+TGG | - | chr1.4:76852647-76852666 | None:intergenic | 65.0% |
| ACGGCGCAAAACGGAGGCGG+CGG | + | chr1.4:76850948-76850967 | MS.gene006171:CDS | 70.0% | |
| GCTGGCGGTGGTTGTGGTGG+TGG | - | chr1.4:76852641-76852660 | None:intergenic | 70.0% | |
| !! | GACAGCTCTGGTGCTGGCGG+TGG | - | chr1.4:76852653-76852672 | None:intergenic | 70.0% |
| !! | GGTGCTGGCGGTGGTTGTGG+TGG | - | chr1.4:76852644-76852663 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 76850885 | 76853352 | 76850885 | ID=MS.gene006171 |
| chr1.4 | mRNA | 76850885 | 76853352 | 76850885 | ID=MS.gene006171.t1;Parent=MS.gene006171 |
| chr1.4 | exon | 76850885 | 76851153 | 76850885 | ID=MS.gene006171.t1.exon1;Parent=MS.gene006171.t1 |
| chr1.4 | CDS | 76850885 | 76851153 | 76850885 | ID=cds.MS.gene006171.t1;Parent=MS.gene006171.t1 |
| chr1.4 | exon | 76851953 | 76853199 | 76851953 | ID=MS.gene006171.t1.exon2;Parent=MS.gene006171.t1 |
| chr1.4 | CDS | 76851953 | 76853199 | 76851953 | ID=cds.MS.gene006171.t1;Parent=MS.gene006171.t1 |
| chr1.4 | exon | 76853336 | 76853352 | 76853336 | ID=MS.gene006171.t1.exon3;Parent=MS.gene006171.t1 |
| chr1.4 | CDS | 76853336 | 76853352 | 76853336 | ID=cds.MS.gene006171.t1;Parent=MS.gene006171.t1 |
| Gene Sequence |
| Protein sequence |
