Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006172.t1 | XP_003592114.1 | 78.3 | 545 | 103 | 3 | 43 | 583 | 40 | 573 | 9.60E-181 | 643.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006172.t1 | Q39117 | 45.2 | 531 | 216 | 8 | 41 | 560 | 23 | 489 | 2.7e-75 | 284.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006172.t1 | G7ICZ1 | 78.3 | 545 | 103 | 3 | 43 | 583 | 40 | 573 | 6.9e-181 | 643.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene006172.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006172.t1 | MTR_1g098900 | 89.818 | 658 | 41 | 7 | 1 | 653 | 1 | 637 | 0.0 | 1060 |
| MS.gene006172.t1 | MTR_6g035370 | 53.994 | 626 | 198 | 14 | 1 | 585 | 1 | 577 | 6.76e-163 | 482 |
| MS.gene006172.t1 | MTR_1g098870 | 45.199 | 604 | 221 | 11 | 2 | 599 | 3 | 502 | 5.07e-144 | 431 |
| MS.gene006172.t1 | MTR_2g026725 | 36.170 | 329 | 172 | 6 | 246 | 573 | 76 | 367 | 4.52e-52 | 184 |
| MS.gene006172.t1 | MTR_2g026725 | 43.820 | 89 | 47 | 2 | 59 | 145 | 261 | 348 | 2.40e-16 | 81.6 |
| MS.gene006172.t1 | MTR_1g081180 | 35.077 | 325 | 173 | 8 | 272 | 577 | 224 | 529 | 1.27e-43 | 165 |
| MS.gene006172.t1 | MTR_1g081180 | 41.000 | 100 | 56 | 2 | 49 | 145 | 407 | 506 | 2.04e-16 | 83.2 |
| MS.gene006172.t1 | MTR_1g492790 | 33.654 | 312 | 155 | 10 | 59 | 363 | 113 | 379 | 9.40e-40 | 153 |
| MS.gene006172.t1 | MTR_1g492790 | 40.541 | 111 | 62 | 3 | 450 | 557 | 94 | 203 | 6.94e-19 | 90.9 |
| MS.gene006172.t1 | MTR_7g114860 | 34.050 | 279 | 136 | 6 | 289 | 558 | 241 | 480 | 4.68e-39 | 150 |
| MS.gene006172.t1 | MTR_7g114860 | 44.792 | 96 | 43 | 2 | 60 | 145 | 381 | 476 | 4.22e-17 | 85.1 |
| MS.gene006172.t1 | MTR_1g060990 | 66.667 | 87 | 28 | 1 | 60 | 145 | 131 | 217 | 1.80e-31 | 129 |
| MS.gene006172.t1 | MTR_1g060990 | 40.602 | 133 | 65 | 5 | 460 | 590 | 122 | 242 | 9.93e-20 | 93.6 |
| MS.gene006172.t1 | MTR_1g060990 | 37.607 | 117 | 65 | 2 | 257 | 365 | 254 | 370 | 1.45e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006172.t1 | AT1G76890 | 43.208 | 611 | 240 | 15 | 57 | 646 | 38 | 562 | 9.57e-141 | 423 |
| MS.gene006172.t1 | AT1G76880 | 53.538 | 325 | 102 | 6 | 50 | 367 | 51 | 333 | 2.45e-89 | 290 |
| MS.gene006172.t1 | AT5G03680 | 30.677 | 502 | 223 | 12 | 60 | 549 | 119 | 507 | 5.13e-57 | 203 |
| MS.gene006172.t1 | AT5G03680 | 44.944 | 89 | 47 | 2 | 468 | 555 | 119 | 206 | 8.72e-18 | 87.8 |
| MS.gene006172.t1 | AT5G28300 | 37.143 | 280 | 140 | 8 | 289 | 555 | 300 | 556 | 1.50e-46 | 174 |
| MS.gene006172.t1 | AT5G28300 | 40.385 | 104 | 51 | 2 | 53 | 145 | 452 | 555 | 5.87e-16 | 82.0 |
| MS.gene006172.t1 | AT3G10000 | 33.815 | 346 | 163 | 9 | 35 | 374 | 59 | 344 | 1.80e-42 | 160 |
| MS.gene006172.t1 | AT3G10000 | 43.434 | 99 | 55 | 1 | 460 | 557 | 80 | 178 | 7.87e-21 | 96.7 |
| MS.gene006172.t1 | AT1G33240 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 7.24e-40 | 155 |
| MS.gene006172.t1 | AT1G33240 | 66.972 | 109 | 31 | 2 | 59 | 165 | 61 | 166 | 1.53e-39 | 155 |
| MS.gene006172.t1 | AT3G10000 | 32.754 | 345 | 158 | 9 | 35 | 374 | 59 | 334 | 8.78e-39 | 150 |
| MS.gene006172.t1 | AT3G10000 | 40.816 | 98 | 49 | 1 | 460 | 557 | 80 | 168 | 3.32e-18 | 88.6 |
| MS.gene006172.t1 | AT5G47660 | 52.632 | 95 | 43 | 1 | 468 | 562 | 303 | 395 | 4.60e-23 | 102 |
| MS.gene006172.t1 | AT5G47660 | 41.000 | 100 | 53 | 3 | 60 | 158 | 303 | 397 | 3.47e-14 | 75.5 |
| MS.gene006172.t1 | AT1G33240 | 62.162 | 74 | 23 | 2 | 94 | 165 | 57 | 127 | 7.81e-19 | 91.3 |
| MS.gene006172.t1 | AT1G33240 | 42.529 | 87 | 49 | 1 | 60 | 145 | 396 | 482 | 4.78e-17 | 85.5 |
| MS.gene006172.t1 | AT3G25990 | 34.409 | 93 | 60 | 1 | 469 | 560 | 55 | 147 | 1.26e-11 | 67.4 |
Find 179 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGTTGCTTCTGTTAT+TGG | 0.191531 | 1.4:+76869601 | None:intergenic |
| TTTCGAGATGCAAGTGTTAA+AGG | 0.236888 | 1.4:-76870885 | MS.gene006172:CDS |
| GTAGGATTCATATTGATAAT+TGG | 0.247032 | 1.4:+76869493 | None:intergenic |
| GTTGGGCCCAACTTGGTTGC+CGG | 0.251390 | 1.4:+76868875 | None:intergenic |
| TTTAAGCATACGATCGGATA+TGG | 0.256367 | 1.4:-76870916 | MS.gene006172:CDS |
| GGTGCAGCTGCTGCTGCTGC+TGG | 0.268164 | 1.4:+76871077 | None:intergenic |
| ACAACAATTGGTGACGAATA+TGG | 0.270177 | 1.4:-76868831 | MS.gene006172:CDS |
| TCAGTTGGATGCTTTGTATA+AGG | 0.314622 | 1.4:-76868507 | MS.gene006172:CDS |
| TCCTCCCAGAGAGGACCTTT+TGG | 0.315488 | 1.4:+76868677 | None:intergenic |
| GGATTTGCAGAGGAGATTCT+TGG | 0.318376 | 1.4:-76869242 | MS.gene006172:CDS |
| AGCAAAACCACCACAAATTT+CGG | 0.324820 | 1.4:-76869668 | MS.gene006172:CDS |
| GCATCCAACTGATGAAAATA+AGG | 0.337506 | 1.4:+76868518 | None:intergenic |
| GAAGTAGGGTTTGTTGTTGA+TGG | 0.341682 | 1.4:+76869439 | None:intergenic |
| AGAAGATGATGAAGAAGATA+TGG | 0.346341 | 1.4:-76868288 | MS.gene006172:CDS |
| TTAACTTGTACCACTGATAT+TGG | 0.352534 | 1.4:+76868923 | None:intergenic |
| GCAATGGCGGCCACCTCAGC+AGG | 0.356286 | 1.4:-76868387 | MS.gene006172:CDS |
| GGACATGTCTTTGAATCTTC+GGG | 0.356338 | 1.4:+76868539 | None:intergenic |
| AGGACATGTCTTTGAATCTT+CGG | 0.357417 | 1.4:+76868538 | None:intergenic |
| TCCTTCTTCCGTTGTGTCTT+CGG | 0.361358 | 1.4:+76869336 | None:intergenic |
| GAAGGATTGGATGGGATTGT+AGG | 0.364446 | 1.4:+76869475 | None:intergenic |
| CCACCTTCCGCCGTCATGTT+AGG | 0.366216 | 1.4:+76871053 | None:intergenic |
| TTGGGCCCAACTTGGTTGCC+GGG | 0.367395 | 1.4:+76868876 | None:intergenic |
| CAACGGTGCCGCCATGCTCT+CGG | 0.368345 | 1.4:+76868427 | None:intergenic |
| ATTGTTGTTGCTGGTGTTGC+GGG | 0.369324 | 1.4:+76868846 | None:intergenic |
| GATGAAAGTGGTGGTGGTGG+TGG | 0.369384 | 1.4:-76868266 | MS.gene006172:CDS |
| ACCGCCAGCACAACCACCCC+CGG | 0.371351 | 1.4:-76868894 | MS.gene006172:CDS |
| CTCGAAAGAGGAAGCGGAAA+TGG | 0.374520 | 1.4:-76869312 | MS.gene006172:CDS |
| GCGGAAGGTGGTGGTGGTGG+TGG | 0.380166 | 1.4:-76871041 | MS.gene006172:CDS |
| TCGTCACCAATTGTTGTTGC+TGG | 0.391070 | 1.4:+76868837 | None:intergenic |
| GAGCATGGCGGCACCGTTGA+TGG | 0.394589 | 1.4:-76868423 | MS.gene006172:CDS |
| AATAGATCTGTAGAAATGTT+AGG | 0.398303 | 1.4:+76869394 | None:intergenic |
| TGCTCTCGGGCTGCACCACC+TGG | 0.410175 | 1.4:+76868441 | None:intergenic |
| TGGTGGTGGTGGTAACTTTG+AGG | 0.417578 | 1.4:-76868252 | MS.gene006172:CDS |
| ATGGACCAAAAGGTCCTCTC+TGG | 0.422352 | 1.4:-76868682 | MS.gene006172:CDS |
| ACAGGAAGAAGAAGAAGATA+TGG | 0.424674 | 1.4:-76868336 | MS.gene006172:CDS |
| TGAAGAACCTCGGTTACAAT+AGG | 0.426544 | 1.4:-76868640 | MS.gene006172:CDS |
| GTAGGAGCTAGCCATGGAAT+TGG | 0.427286 | 1.4:+76869369 | None:intergenic |
| ACGGCGGAAGGTGGTGGTGG+TGG | 0.432204 | 1.4:-76871044 | MS.gene006172:CDS |
| AGTGCTTGAACTTCAACTTT+CGG | 0.432707 | 1.4:+76868746 | None:intergenic |
| ATCAGGAAGCTAGCAGAACT+TGG | 0.434480 | 1.4:-76869874 | MS.gene006172:intron |
| GGAAGAGGGTTGGTGGAAGT+AGG | 0.435197 | 1.4:+76869424 | None:intergenic |
| GAAGAGGGTTGGTGGAAGTA+GGG | 0.442303 | 1.4:+76869425 | None:intergenic |
| TAACAATGGTGAGACTTTCA+TGG | 0.445045 | 1.4:-76868792 | MS.gene006172:CDS |
| GATTCATATTGATAATTGGT+TGG | 0.446345 | 1.4:+76869497 | None:intergenic |
| AACGTAGCTTCGGTGGTAAC+CGG | 0.450832 | 1.4:-76870965 | MS.gene006172:CDS |
| TAGGGTTTGTTGTTGATGGT+TGG | 0.451052 | 1.4:+76869443 | None:intergenic |
| GTTACAATAGGAATGCAAAA+AGG | 0.452050 | 1.4:-76868628 | MS.gene006172:CDS |
| GATGCTTTGTATAAGGAGAA+AGG | 0.452352 | 1.4:-76868500 | MS.gene006172:CDS |
| ATTCATATTGATAATTGGTT+GGG | 0.453777 | 1.4:+76869498 | None:intergenic |
| TCAGAGAGTGATGTTGAAAG+AGG | 0.453881 | 1.4:-76871005 | MS.gene006172:CDS |
| AACGGTGCCGCCATGCTCTC+GGG | 0.453957 | 1.4:+76868428 | None:intergenic |
| GCAACACCAGCAACAACAAT+TGG | 0.455453 | 1.4:-76868843 | MS.gene006172:CDS |
| TGGTGTTGCGGGACTATTGT+TGG | 0.455975 | 1.4:+76868857 | None:intergenic |
| ATTGCGGAACAACAAAATCT+AGG | 0.456470 | 1.4:-76869064 | MS.gene006172:CDS |
| AAGTTTCTTGTCGCGGCCAC+CGG | 0.458447 | 1.4:+76870946 | None:intergenic |
| AAAAGATGGAAGAGGGTTGG+TGG | 0.469141 | 1.4:+76869417 | None:intergenic |
| GTAGAAATGTTAGGAAAAGA+TGG | 0.472744 | 1.4:+76869403 | None:intergenic |
| GTTGGTGCTACACTTCTTTG+TGG | 0.473011 | 1.4:+76868965 | None:intergenic |
| GGTGGCCGCCATTGCTGCTC+CGG | 0.473929 | 1.4:+76868395 | None:intergenic |
| CTTCTTCTTCTTCCTGTCCA+CGG | 0.478198 | 1.4:+76868342 | None:intergenic |
| AAAATAGTTGAAGGATTGGA+TGG | 0.481737 | 1.4:+76869466 | None:intergenic |
| CTTTGTGGGATGAAGTTTCA+AGG | 0.482165 | 1.4:-76870860 | MS.gene006172:intron |
| GGTGTTGCGGGACTATTGTT+GGG | 0.486909 | 1.4:+76868858 | None:intergenic |
| ATGACGGCGGAAGGTGGTGG+TGG | 0.488218 | 1.4:-76871047 | MS.gene006172:CDS |
| GACTATTGTTGGGCCCAACT+TGG | 0.490563 | 1.4:+76868868 | None:intergenic |
| TGCATTTCTTTGAACTTCTG+TGG | 0.490979 | 1.4:+76869848 | None:intergenic |
| TTGGAAAATAGTTGAAGGAT+TGG | 0.493708 | 1.4:+76869462 | None:intergenic |
| GGTGGTGCAGCCCGAGAGCA+TGG | 0.499156 | 1.4:-76868438 | MS.gene006172:CDS |
| TGCAAAGAATCAATAGAGAG+AGG | 0.504131 | 1.4:-76869156 | MS.gene006172:CDS |
| GGTTGATGTTGATGAGTTGA+AGG | 0.511906 | 1.4:+76869700 | None:intergenic |
| ATGGATGAAAGTGGTGGTGG+TGG | 0.513204 | 1.4:-76868269 | MS.gene006172:CDS |
| TACCAAGAGAATGGACCAAA+AGG | 0.516965 | 1.4:-76868692 | MS.gene006172:CDS |
| GACAACAAGTACCAAGAGAA+TGG | 0.517884 | 1.4:-76868701 | MS.gene006172:CDS |
| TGTGTTTGTTGTGGTGGCGG+TGG | 0.518161 | 1.4:+76869010 | None:intergenic |
| AATTGTTGTTGCTGGTGTTG+CGG | 0.524953 | 1.4:+76868845 | None:intergenic |
| TGGGCCCAACTTGGTTGCCG+GGG | 0.525453 | 1.4:+76868877 | None:intergenic |
| TTGTATAAGGAGAAAGGAAA+GGG | 0.527542 | 1.4:-76868494 | MS.gene006172:CDS |
| TGGTGGTAACTTTGAGGTAG+TGG | 0.527717 | 1.4:-76868246 | MS.gene006172:CDS |
| TCCGAAGACACAACGGAAGA+AGG | 0.527908 | 1.4:-76869337 | MS.gene006172:CDS |
| CTAGCTGATGCACCCACTGC+AGG | 0.529027 | 1.4:+76868215 | None:intergenic |
| TGGTTCAGCCGGAGCAGCAA+TGG | 0.533323 | 1.4:-76868403 | MS.gene006172:CDS |
| GAAAATTCTAGTGGTGGAGC+TGG | 0.535467 | 1.4:-76868470 | MS.gene006172:CDS |
| GGGCCCAACTTGGTTGCCGG+GGG | 0.537475 | 1.4:+76868878 | None:intergenic |
| ATTGGTGCTACCGCCGGTGT+TGG | 0.539807 | 1.4:+76868941 | None:intergenic |
| TGCTCCGGCTGAACCATCAA+CGG | 0.540154 | 1.4:+76868410 | None:intergenic |
| TGTTGTGTTTGTTGTGGTGG+CGG | 0.542486 | 1.4:+76869007 | None:intergenic |
| GAAGATGGTGAACGTAGCTT+CGG | 0.543473 | 1.4:-76870975 | MS.gene006172:CDS |
| GGTTGGTATGAAAATGATCA+AGG | 0.547374 | 1.4:+76869722 | None:intergenic |
| ATGTTAGGAAAAGATGGAAG+AGG | 0.551505 | 1.4:+76869409 | None:intergenic |
| GCTACCGCCGGTGTTGGTGT+TGG | 0.551728 | 1.4:+76868947 | None:intergenic |
| GTGGCCGCGACAAGAAACTT+TGG | 0.552103 | 1.4:-76870943 | MS.gene006172:CDS |
| AAGGATCTCGAAAGAGGAAG+CGG | 0.554153 | 1.4:-76869318 | MS.gene006172:CDS |
| TGGTGGAGCTGGTTCGAACC+AGG | 0.556702 | 1.4:-76868459 | MS.gene006172:CDS |
| TGTTGTTGTGTTTGTTGTGG+TGG | 0.557187 | 1.4:+76869004 | None:intergenic |
| AGGAAAAGATGGAAGAGGGT+TGG | 0.558092 | 1.4:+76869414 | None:intergenic |
| TGTTGTTGTTGTGTTTGTTG+TGG | 0.560673 | 1.4:+76869001 | None:intergenic |
| CAAGTGTTAAAGGTCCTTTG+TGG | 0.560707 | 1.4:-76870875 | MS.gene006172:CDS |
| GGCACCGTTGATGGTTCAGC+CGG | 0.560808 | 1.4:-76868414 | MS.gene006172:CDS |
| CCACCTAACATGACGGCGGA+AGG | 0.561648 | 1.4:-76871056 | MS.gene006172:CDS |
| TTCAGCCGGAGCAGCAATGG+CGG | 0.565524 | 1.4:-76868400 | MS.gene006172:CDS |
| CGGAAGAAGGATCTCGAAAG+AGG | 0.566261 | 1.4:-76869324 | MS.gene006172:CDS |
| TTTGTATAAGGAGAAAGGAA+AGG | 0.568622 | 1.4:-76868495 | MS.gene006172:CDS |
| GATGGTTGGAAAATAGTTGA+AGG | 0.571791 | 1.4:+76869457 | None:intergenic |
| GGTGCTACACTTCTTTGTGG+TGG | 0.573648 | 1.4:+76868968 | None:intergenic |
| GATGGTGAACGTAGCTTCGG+TGG | 0.573832 | 1.4:-76870972 | MS.gene006172:CDS |
| GAAAGTGACAGAGAAGCAAG+AGG | 0.574790 | 1.4:-76869263 | MS.gene006172:CDS |
| CATGGAGCAGAACCGTGGAC+AGG | 0.575210 | 1.4:-76868354 | MS.gene006172:CDS |
| TTTGCAGAGGAGATTCTTGG+AGG | 0.578270 | 1.4:-76869239 | MS.gene006172:CDS |
| AAAATAAGAGAAACTATGCT+AGG | 0.578777 | 1.4:-76871137 | None:intergenic |
| TTGCATTCCTATTGTAACCG+AGG | 0.579636 | 1.4:+76868633 | None:intergenic |
| GAAAGAGGAAGAGTTGAAGA+TGG | 0.580801 | 1.4:-76870990 | MS.gene006172:CDS |
| AGCGCCAAAGTTTCTTGTCG+CGG | 0.581032 | 1.4:+76870939 | None:intergenic |
| TGGACCAAAAGGTCCTCTCT+GGG | 0.583763 | 1.4:-76868681 | MS.gene006172:CDS |
| ATGTTGATGAGTTGAAGGGT+TGG | 0.585562 | 1.4:+76869705 | None:intergenic |
| AACAATGGTGAGACTTTCAT+GGG | 0.588661 | 1.4:-76868791 | MS.gene006172:CDS |
| GGTCATTGAGAAACGCGAGC+AGG | 0.589179 | 1.4:-76869218 | MS.gene006172:CDS |
| AAAGAGGAAGCGGAAATGGA+AGG | 0.590185 | 1.4:-76869308 | MS.gene006172:CDS |
| AGATCTATTATCCAATTCCA+TGG | 0.590202 | 1.4:-76869380 | MS.gene006172:CDS |
| GAAGAAGATATGGATGAAAG+TGG | 0.590417 | 1.4:-76868278 | MS.gene006172:CDS |
| AAGTGTTAAAGGTCCTTTGT+GGG | 0.591969 | 1.4:-76870874 | MS.gene006172:CDS |
| ACTGATATTGGTGCTACCGC+CGG | 0.592470 | 1.4:+76868935 | None:intergenic |
| TATCACAAGAGAACCAAAGA+TGG | 0.592914 | 1.4:-76869799 | MS.gene006172:CDS |
| AAATAGTTGAAGGATTGGAT+GGG | 0.593793 | 1.4:+76869467 | None:intergenic |
| GCAAAGAATCAATAGAGAGA+GGG | 0.595028 | 1.4:-76869155 | MS.gene006172:CDS |
| TGTTAGGAAAAGATGGAAGA+GGG | 0.595844 | 1.4:+76869410 | None:intergenic |
| ATGTTATCTTCTCCCTGCTG+AGG | 0.596975 | 1.4:+76868374 | None:intergenic |
| ATGGTGAGACTTTCATGGGA+GGG | 0.597885 | 1.4:-76868787 | MS.gene006172:CDS |
| CCTTCCGCCGTCATGTTAGG+TGG | 0.598899 | 1.4:+76871056 | None:intergenic |
| GGTGTTGGTGCCGAAATTTG+TGG | 0.601888 | 1.4:+76869658 | None:intergenic |
| TGTAGCACCAACACCAACAC+CGG | 0.603439 | 1.4:-76868954 | MS.gene006172:CDS |
| AGAAGCAACAATGTCACAAG+TGG | 0.606912 | 1.4:-76869593 | MS.gene006172:CDS |
| GGCCGAGGTGGAAAATCAGA+TGG | 0.609437 | 1.4:-76869778 | MS.gene006172:CDS |
| AGTGGCAAACAAACCTGCAG+TGG | 0.609531 | 1.4:-76868228 | MS.gene006172:CDS |
| AGAACCAAAGATGGCCGAGG+TGG | 0.611661 | 1.4:-76869790 | MS.gene006172:CDS |
| AACATGACGGCGGAAGGTGG+TGG | 0.613643 | 1.4:-76871050 | MS.gene006172:CDS |
| ATGGATGAAGATGATAAAGA+TGG | 0.614880 | 1.4:-76868317 | MS.gene006172:CDS |
| AAGAGAACCAAAGATGGCCG+AGG | 0.615515 | 1.4:-76869793 | MS.gene006172:CDS |
| GATAAATCTGAGGACGAGCA+TGG | 0.616417 | 1.4:-76868723 | MS.gene006172:CDS |
| AGCTGCACCACCTAACATGA+CGG | 0.617434 | 1.4:-76871063 | MS.gene006172:CDS |
| CCTAACATGACGGCGGAAGG+TGG | 0.623080 | 1.4:-76871053 | MS.gene006172:CDS |
| TCAGGAAGCTAGCAGAACTT+GGG | 0.624015 | 1.4:-76869873 | MS.gene006172:intron |
| CAATGGCGGCCACCTCAGCA+GGG | 0.624870 | 1.4:-76868386 | MS.gene006172:CDS |
| GTTGATGTTGATGAGTTGAA+GGG | 0.625077 | 1.4:+76869701 | None:intergenic |
| GTTGGTATGAAAATGATCAA+GGG | 0.626104 | 1.4:+76869723 | None:intergenic |
| TTATCTTCTCCCTGCTGAGG+TGG | 0.627005 | 1.4:+76868377 | None:intergenic |
| GATATGGATGAAAGTGGTGG+TGG | 0.629728 | 1.4:-76868272 | MS.gene006172:CDS |
| AAGGGAGAAAATTCTAGTGG+TGG | 0.630570 | 1.4:-76868476 | MS.gene006172:CDS |
| GTCTTCGGAAGACGTCGAGT+AGG | 0.632078 | 1.4:+76869351 | None:intergenic |
| TCTTTAGCAATGAAGAACCT+CGG | 0.632836 | 1.4:-76868650 | MS.gene006172:CDS |
| AGAAGCAAGAGGATTTGCAG+AGG | 0.635450 | 1.4:-76869252 | MS.gene006172:CDS |
| GTAGCTTCGGTGGTAACCGG+TGG | 0.643526 | 1.4:-76870962 | MS.gene006172:CDS |
| TTCAAGCACTGATAAATCTG+AGG | 0.643720 | 1.4:-76868733 | MS.gene006172:CDS |
| GACGTCTTCCGAAGACACAA+CGG | 0.647187 | 1.4:-76869344 | MS.gene006172:CDS |
| TGAAGATGATAAAGATGGTG+AGG | 0.649200 | 1.4:-76868312 | MS.gene006172:CDS |
| GTAACAACTTGTGACGGTGT+TGG | 0.650468 | 1.4:+76869643 | None:intergenic |
| GTTGGTGCCGAAATTTGTGG+TGG | 0.654114 | 1.4:+76869661 | None:intergenic |
| TGCATGAGGGATACTTAGAG+TGG | 0.657060 | 1.4:+76869564 | None:intergenic |
| GGAAAGGGAGAAAATTCTAG+TGG | 0.661145 | 1.4:-76868479 | MS.gene006172:CDS |
| GTGGCAAACAAACCTGCAGT+GGG | 0.663059 | 1.4:-76868227 | MS.gene006172:CDS |
| CGTCGAGTAGGAGCTAGCCA+TGG | 0.663851 | 1.4:+76869363 | None:intergenic |
| TCAGCAGGGAGAAGATAACA+TGG | 0.666074 | 1.4:-76868372 | MS.gene006172:CDS |
| TTGATGGAACAGTTGCATGA+GGG | 0.669086 | 1.4:+76869551 | None:intergenic |
| GAGTTGTTAGAGAAGAAGCG+TGG | 0.669199 | 1.4:-76869192 | MS.gene006172:CDS |
| TGGGAGGGATGAGTTCGTCA+AGG | 0.669391 | 1.4:-76868772 | MS.gene006172:CDS |
| ATTGATGGAACAGTTGCATG+AGG | 0.676758 | 1.4:+76869550 | None:intergenic |
| GATAACATGGAGCAGAACCG+TGG | 0.681082 | 1.4:-76868359 | MS.gene006172:CDS |
| ACCAAAAGGTCCTCTCTGGG+AGG | 0.684443 | 1.4:-76868678 | MS.gene006172:CDS |
| ATTGTGAAAGTTGATAACAA+TGG | 0.690514 | 1.4:-76868806 | MS.gene006172:CDS |
| AAAGATATCTCCTCCCAGAG+AGG | 0.693194 | 1.4:+76868668 | None:intergenic |
| AATGGTGAGACTTTCATGGG+AGG | 0.694246 | 1.4:-76868788 | MS.gene006172:CDS |
| CTTGAAACTTCATCCCACAA+AGG | 0.698850 | 1.4:+76870861 | None:intergenic |
| GGCGGTAGCACCAATATCAG+TGG | 0.699903 | 1.4:-76868933 | MS.gene006172:CDS |
| GAGGGATGAGTTCGTCAAGG+TGG | 0.700639 | 1.4:-76868769 | MS.gene006172:CDS |
| TGGAGCTGGTTCGAACCAGG+TGG | 0.701524 | 1.4:-76868456 | MS.gene006172:CDS |
| TGCACCACCTAACATGACGG+CGG | 0.703359 | 1.4:-76871060 | MS.gene006172:CDS |
| AGCACCAACACCAACACCGG+CGG | 0.703596 | 1.4:-76868951 | MS.gene006172:CDS |
| GGTGCAGCCCGAGAGCATGG+CGG | 0.703630 | 1.4:-76868435 | MS.gene006172:CDS |
| GCAGTTGTAACAACTTGTGA+CGG | 0.714902 | 1.4:+76869637 | None:intergenic |
| GAAGATATGGATGAAAGTGG+TGG | 0.720036 | 1.4:-76868275 | MS.gene006172:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAATAAATTAGAAA+AGG | + | chr1.4:76868774-76868793 | None:intergenic | 10.0% |
| !!! | TTACAAAAATTTAGTTTATT+TGG | - | chr1.4:76868543-76868562 | MS.gene006172:CDS | 10.0% |
| !! | AAAAAATAAATTAGAAAAGG+AGG | + | chr1.4:76868771-76868790 | None:intergenic | 15.0% |
| !! | ATAAACAAGAAATAAAAACA+TGG | + | chr1.4:76869271-76869290 | None:intergenic | 15.0% |
| !! | TAAACAAGAAATAAAAACAT+GGG | + | chr1.4:76869270-76869289 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTTCATTGCTTT+TGG | - | chr1.4:76868780-76868799 | MS.gene006172:CDS | 15.0% |
| !! | AAAGTAACTGAAATAGATAA+AGG | + | chr1.4:76869168-76869187 | None:intergenic | 20.0% |
| !! | ACAAATGCATGATATAAAAA+AGG | + | chr1.4:76869331-76869350 | None:intergenic | 20.0% |
| !! | TCTCACTTTAATTATTAATC+AGG | - | chr1.4:76869436-76869455 | MS.gene006172:CDS | 20.0% |
| !!! | ATTCATATTGATAATTGGTT+GGG | + | chr1.4:76869832-76869851 | None:intergenic | 20.0% |
| ! | AATACAAAAGACTAAGAAAC+CGG | + | chr1.4:76868729-76868748 | None:intergenic | 25.0% |
| ! | AATAGATCTGTAGAAATGTT+AGG | + | chr1.4:76869936-76869955 | None:intergenic | 25.0% |
| ! | ATGTGAAGTCTATATGATTT+GGG | - | chr1.4:76868853-76868872 | MS.gene006172:CDS | 25.0% |
| !! | AAAAAGGTGCAAAGAAAAAT+GGG | - | chr1.4:76870715-76870734 | MS.gene006172:intron | 25.0% |
| !! | ATTAGAAAAGGAGGATTTTA+TGG | + | chr1.4:76868762-76868781 | None:intergenic | 25.0% |
| !! | CATTTCTTTTCATCAATTCA+TGG | - | chr1.4:76869079-76869098 | MS.gene006172:CDS | 25.0% |
| !! | GATTCATATTGATAATTGGT+TGG | + | chr1.4:76869833-76869852 | None:intergenic | 25.0% |
| !! | GTAGGATTCATATTGATAAT+TGG | + | chr1.4:76869837-76869856 | None:intergenic | 25.0% |
| !! | TTTGATAACTCAATTCAAGT+TGG | + | chr1.4:76868948-76868967 | None:intergenic | 25.0% |
| !!! | ATTCAAGTTGGTAACTTATT+TGG | + | chr1.4:76868936-76868955 | None:intergenic | 25.0% |
| !!! | ATTGTGAAAGTTGATAACAA+TGG | - | chr1.4:76870521-76870540 | MS.gene006172:intron | 25.0% |
| !!! | TATTTTTTCATTGCTTTTGG+TGG | - | chr1.4:76868783-76868802 | MS.gene006172:CDS | 25.0% |
| AAAATAGTTGAAGGATTGGA+TGG | + | chr1.4:76869864-76869883 | None:intergenic | 30.0% | |
| AAAATGCATGAACTGAAGTT+AGG | + | chr1.4:76869049-76869068 | None:intergenic | 30.0% | |
| AAATAGTTGAAGGATTGGAT+GGG | + | chr1.4:76869863-76869882 | None:intergenic | 30.0% | |
| AAGAAGCAAAAACCAAATGA+TGG | + | chr1.4:76868703-76868722 | None:intergenic | 30.0% | |
| AAGTAGTGTTAATTGCAACA+TGG | + | chr1.4:76869206-76869225 | None:intergenic | 30.0% | |
| AGAAGATGATGAAGAAGATA+TGG | - | chr1.4:76871039-76871058 | MS.gene006172:CDS | 30.0% | |
| AGATCTATTATCCAATTCCA+TGG | - | chr1.4:76869947-76869966 | MS.gene006172:intron | 30.0% | |
| ATGGATGAAGATGATAAAGA+TGG | - | chr1.4:76871010-76871029 | MS.gene006172:CDS | 30.0% | |
| GATGTGAAGTCTATATGATT+TGG | - | chr1.4:76868852-76868871 | MS.gene006172:CDS | 30.0% | |
| GTAGAAATGTTAGGAAAAGA+TGG | + | chr1.4:76869927-76869946 | None:intergenic | 30.0% | |
| GTCTTTCTTGCAAAAAATTG+CGG | - | chr1.4:76870247-76870266 | MS.gene006172:intron | 30.0% | |
| GTTACAATAGGAATGCAAAA+AGG | - | chr1.4:76870699-76870718 | MS.gene006172:intron | 30.0% | |
| GTTGGTATGAAAATGATCAA+GGG | + | chr1.4:76869607-76869626 | None:intergenic | 30.0% | |
| TTGGAAAATAGTTGAAGGAT+TGG | + | chr1.4:76869868-76869887 | None:intergenic | 30.0% | |
| TTGTATAAGGAGAAAGGAAA+GGG | - | chr1.4:76870833-76870852 | MS.gene006172:intron | 30.0% | |
| TTTGTATAAGGAGAAAGGAA+AGG | - | chr1.4:76870832-76870851 | MS.gene006172:intron | 30.0% | |
| ! | CAAAAAGGTGCAAAGAAAAA+TGG | - | chr1.4:76870714-76870733 | MS.gene006172:intron | 30.0% |
| ! | TCAGTTCATGCATTTTTCAT+GGG | - | chr1.4:76869053-76869072 | MS.gene006172:CDS | 30.0% |
| ! | TTCAGTTCATGCATTTTTCA+TGG | - | chr1.4:76869052-76869071 | MS.gene006172:CDS | 30.0% |
| !! | AGTTGGTAACCGAAATAAAA+GGG | + | chr1.4:76868989-76869008 | None:intergenic | 30.0% |
| !! | GTAGTTGCAATATTGTTTTG+AGG | + | chr1.4:76869810-76869829 | None:intergenic | 30.0% |
| !! | TTAACTTGTACCACTGATAT+TGG | + | chr1.4:76870407-76870426 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGCTTCTTTTTC+CGG | - | chr1.4:76868707-76868726 | MS.gene006172:CDS | 30.0% |
| !!! | ATGTCCTTATTTTCATCAGT+TGG | - | chr1.4:76870805-76870824 | MS.gene006172:intron | 30.0% |
| !!! | TTTTGAGGCATTGAAATTGA+TGG | + | chr1.4:76869795-76869814 | None:intergenic | 30.0% |
| AACAATGGTGAGACTTTCAT+GGG | - | chr1.4:76870536-76870555 | MS.gene006172:intron | 35.0% | |
| AAGTGTTAAAGGTCCTTTGT+GGG | - | chr1.4:76868453-76868472 | MS.gene006172:CDS | 35.0% | |
| AATTGCAACATGGAAATGCA+AGG | + | chr1.4:76869196-76869215 | None:intergenic | 35.0% | |
| ACAGGAAGAAGAAGAAGATA+TGG | - | chr1.4:76870991-76871010 | MS.gene006172:CDS | 35.0% | |
| AGCAAAACCACCACAAATTT+CGG | - | chr1.4:76869659-76869678 | MS.gene006172:CDS | 35.0% | |
| AGGACATGTCTTTGAATCTT+CGG | + | chr1.4:76870792-76870811 | None:intergenic | 35.0% | |
| AGTGCTTGAACTTCAACTTT+CGG | + | chr1.4:76870584-76870603 | None:intergenic | 35.0% | |
| ATGTTAGGAAAAGATGGAAG+AGG | + | chr1.4:76869921-76869940 | None:intergenic | 35.0% | |
| ATTCATGTGATGTAGAGATC+TGG | - | chr1.4:76868656-76868675 | MS.gene006172:CDS | 35.0% | |
| ATTGCGGAACAACAAAATCT+AGG | - | chr1.4:76870263-76870282 | MS.gene006172:intron | 35.0% | |
| GAAGAAGATATGGATGAAAG+TGG | - | chr1.4:76871049-76871068 | MS.gene006172:CDS | 35.0% | |
| GATGCTTTGTATAAGGAGAA+AGG | - | chr1.4:76870827-76870846 | MS.gene006172:intron | 35.0% | |
| GATGGTTGGAAAATAGTTGA+AGG | + | chr1.4:76869873-76869892 | None:intergenic | 35.0% | |
| GCAAAGAATCAATAGAGAGA+GGG | - | chr1.4:76870172-76870191 | MS.gene006172:intron | 35.0% | |
| GCATCCAACTGATGAAAATA+AGG | + | chr1.4:76870812-76870831 | None:intergenic | 35.0% | |
| TAACAATGGTGAGACTTTCA+TGG | - | chr1.4:76870535-76870554 | MS.gene006172:intron | 35.0% | |
| TATCACAAGAGAACCAAAGA+TGG | - | chr1.4:76869528-76869547 | MS.gene006172:CDS | 35.0% | |
| TCAGTTGGATGCTTTGTATA+AGG | - | chr1.4:76870820-76870839 | MS.gene006172:intron | 35.0% | |
| TCTTTAGCAATGAAGAACCT+CGG | - | chr1.4:76870677-76870696 | MS.gene006172:intron | 35.0% | |
| TGAAGATGATAAAGATGGTG+AGG | - | chr1.4:76871015-76871034 | MS.gene006172:CDS | 35.0% | |
| TGCAAAGAATCAATAGAGAG+AGG | - | chr1.4:76870171-76870190 | MS.gene006172:intron | 35.0% | |
| TGCATTTCTTTGAACTTCTG+TGG | + | chr1.4:76869482-76869501 | None:intergenic | 35.0% | |
| TGTTAGGAAAAGATGGAAGA+GGG | + | chr1.4:76869920-76869939 | None:intergenic | 35.0% | |
| TTCATGTGATGTAGAGATCT+GGG | - | chr1.4:76868657-76868676 | MS.gene006172:CDS | 35.0% | |
| TTTAAGCATACGATCGGATA+TGG | - | chr1.4:76868411-76868430 | MS.gene006172:CDS | 35.0% | |
| TTTCGAGATGCAAGTGTTAA+AGG | - | chr1.4:76868442-76868461 | MS.gene006172:CDS | 35.0% | |
| ! | GACATTGTTGCTTCTGTTAT+TGG | + | chr1.4:76869729-76869748 | None:intergenic | 35.0% |
| ! | GGTTGGTATGAAAATGATCA+AGG | + | chr1.4:76869608-76869627 | None:intergenic | 35.0% |
| ! | GTTGATGTTGATGAGTTGAA+GGG | + | chr1.4:76869629-76869648 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTGTTTGTTG+TGG | + | chr1.4:76870329-76870348 | None:intergenic | 35.0% |
| ! | TTGGTAACCGAAATAAAAGG+GGG | + | chr1.4:76868987-76869006 | None:intergenic | 35.0% |
| !! | ACAACAATTGGTGACGAATA+TGG | - | chr1.4:76870496-76870515 | MS.gene006172:intron | 35.0% |
| !! | GAGTTGGTAACCGAAATAAA+AGG | + | chr1.4:76868990-76869009 | None:intergenic | 35.0% |
| !! | GTTGGTAACCGAAATAAAAG+GGG | + | chr1.4:76868988-76869007 | None:intergenic | 35.0% |
| !! | TTCAAGCACTGATAAATCTG+AGG | - | chr1.4:76870594-76870613 | MS.gene006172:intron | 35.0% |
| !! | TTCTTTCCCCCCTTTTATTT+CGG | - | chr1.4:76868977-76868996 | MS.gene006172:CDS | 35.0% |
| AAGGGAGAAAATTCTAGTGG+TGG | - | chr1.4:76870851-76870870 | MS.gene006172:intron | 40.0% | |
| AGAAGCAACAATGTCACAAG+TGG | - | chr1.4:76869734-76869753 | MS.gene006172:CDS | 40.0% | |
| ATTGATGGAACAGTTGCATG+AGG | + | chr1.4:76869780-76869799 | None:intergenic | 40.0% | |
| ATTTCGGTTACCAACTCTCA+TGG | - | chr1.4:76868993-76869012 | MS.gene006172:CDS | 40.0% | |
| CAAGTGTTAAAGGTCCTTTG+TGG | - | chr1.4:76868452-76868471 | MS.gene006172:CDS | 40.0% | |
| CTTCAATTTCCCATGAGAGT+TGG | + | chr1.4:76869006-76869025 | None:intergenic | 40.0% | |
| CTTGAAACTTCATCCCACAA+AGG | + | chr1.4:76868469-76868488 | None:intergenic | 40.0% | |
| CTTGCTTCAACTCCATCATT+TGG | - | chr1.4:76868688-76868707 | MS.gene006172:CDS | 40.0% | |
| CTTTGTGGGATGAAGTTTCA+AGG | - | chr1.4:76868467-76868486 | MS.gene006172:CDS | 40.0% | |
| GAAAGAGGAAGAGTTGAAGA+TGG | - | chr1.4:76868337-76868356 | MS.gene006172:CDS | 40.0% | |
| GAAGATATGGATGAAAGTGG+TGG | - | chr1.4:76871052-76871071 | MS.gene006172:CDS | 40.0% | |
| GACAACAAGTACCAAGAGAA+TGG | - | chr1.4:76870626-76870645 | MS.gene006172:intron | 40.0% | |
| GCAGTTGTAACAACTTGTGA+CGG | + | chr1.4:76869693-76869712 | None:intergenic | 40.0% | |
| GGAAAGGGAGAAAATTCTAG+TGG | - | chr1.4:76870848-76870867 | MS.gene006172:intron | 40.0% | |
| GGACATGTCTTTGAATCTTC+GGG | + | chr1.4:76870791-76870810 | None:intergenic | 40.0% | |
| TACCAAGAGAATGGACCAAA+AGG | - | chr1.4:76870635-76870654 | MS.gene006172:intron | 40.0% | |
| TCAGAGAGTGATGTTGAAAG+AGG | - | chr1.4:76868322-76868341 | MS.gene006172:CDS | 40.0% | |
| TGAAGAACCTCGGTTACAAT+AGG | - | chr1.4:76870687-76870706 | MS.gene006172:intron | 40.0% | |
| TGGTAACCGAAATAAAAGGG+GGG | + | chr1.4:76868986-76869005 | None:intergenic | 40.0% | |
| TTGATGGAACAGTTGCATGA+GGG | + | chr1.4:76869779-76869798 | None:intergenic | 40.0% | |
| TTGCATTCCTATTGTAACCG+AGG | + | chr1.4:76870697-76870716 | None:intergenic | 40.0% | |
| TTTCGGTTACCAACTCTCAT+GGG | - | chr1.4:76868994-76869013 | MS.gene006172:CDS | 40.0% | |
| ! | AATTGTTGTTGCTGGTGTTG+CGG | + | chr1.4:76870485-76870504 | None:intergenic | 40.0% |
| ! | ATGTTGATGAGTTGAAGGGT+TGG | + | chr1.4:76869625-76869644 | None:intergenic | 40.0% |
| ! | GGTTGATGTTGATGAGTTGA+AGG | + | chr1.4:76869630-76869649 | None:intergenic | 40.0% |
| ! | TACCATCTGATTTTCCACCT+CGG | + | chr1.4:76869554-76869573 | None:intergenic | 40.0% |
| !! | GAAGTAGGGTTTGTTGTTGA+TGG | + | chr1.4:76869891-76869910 | None:intergenic | 40.0% |
| !! | GGTGGTTTTGCTATGTTTTG+AGG | + | chr1.4:76869651-76869670 | None:intergenic | 40.0% |
| !! | TAGGGTTTGTTGTTGATGGT+TGG | + | chr1.4:76869887-76869906 | None:intergenic | 40.0% |
| !! | TGTTGTTGTGTTTGTTGTGG+TGG | + | chr1.4:76870326-76870345 | None:intergenic | 40.0% |
| AAAAGATGGAAGAGGGTTGG+TGG | + | chr1.4:76869913-76869932 | None:intergenic | 45.0% | |
| AAAGAGGAAGCGGAAATGGA+AGG | - | chr1.4:76870019-76870038 | MS.gene006172:intron | 45.0% | |
| AAAGATATCTCCTCCCAGAG+AGG | + | chr1.4:76870662-76870681 | None:intergenic | 45.0% | |
| AAGGATCTCGAAAGAGGAAG+CGG | - | chr1.4:76870009-76870028 | MS.gene006172:intron | 45.0% | |
| AATGGTGAGACTTTCATGGG+AGG | - | chr1.4:76870539-76870558 | MS.gene006172:intron | 45.0% | |
| AGAAGCAAGAGGATTTGCAG+AGG | - | chr1.4:76870075-76870094 | MS.gene006172:intron | 45.0% | |
| AGGAAAAGATGGAAGAGGGT+TGG | + | chr1.4:76869916-76869935 | None:intergenic | 45.0% | |
| ATCAGGAAGCTAGCAGAACT+TGG | - | chr1.4:76869453-76869472 | MS.gene006172:CDS | 45.0% | |
| ATGGTGAGACTTTCATGGGA+GGG | - | chr1.4:76870540-76870559 | MS.gene006172:intron | 45.0% | |
| ATGTTATCTTCTCCCTGCTG+AGG | + | chr1.4:76870956-76870975 | None:intergenic | 45.0% | |
| CTTCTTCTTCTTCCTGTCCA+CGG | + | chr1.4:76870988-76871007 | None:intergenic | 45.0% | |
| GAAAGTGACAGAGAAGCAAG+AGG | - | chr1.4:76870064-76870083 | MS.gene006172:intron | 45.0% | |
| GAAGATGGTGAACGTAGCTT+CGG | - | chr1.4:76868352-76868371 | MS.gene006172:CDS | 45.0% | |
| GAAGGATTGGATGGGATTGT+AGG | + | chr1.4:76869855-76869874 | None:intergenic | 45.0% | |
| GAGTTGTTAGAGAAGAAGCG+TGG | - | chr1.4:76870135-76870154 | MS.gene006172:intron | 45.0% | |
| GATAAATCTGAGGACGAGCA+TGG | - | chr1.4:76870604-76870623 | MS.gene006172:intron | 45.0% | |
| GATATGGATGAAAGTGGTGG+TGG | - | chr1.4:76871055-76871074 | MS.gene006172:CDS | 45.0% | |
| GCAACACCAGCAACAACAAT+TGG | - | chr1.4:76870484-76870503 | MS.gene006172:intron | 45.0% | |
| GGATTTGCAGAGGAGATTCT+TGG | - | chr1.4:76870085-76870104 | MS.gene006172:intron | 45.0% | |
| GTAACAACTTGTGACGGTGT+TGG | + | chr1.4:76869687-76869706 | None:intergenic | 45.0% | |
| TCAGCAGGGAGAAGATAACA+TGG | - | chr1.4:76870955-76870974 | MS.gene006172:CDS | 45.0% | |
| TCAGGAAGCTAGCAGAACTT+GGG | - | chr1.4:76869454-76869473 | MS.gene006172:CDS | 45.0% | |
| TCCTTCTTCCGTTGTGTCTT+CGG | + | chr1.4:76869994-76870013 | None:intergenic | 45.0% | |
| TGCATGAGGGATACTTAGAG+TGG | + | chr1.4:76869766-76869785 | None:intergenic | 45.0% | |
| TTTGCAGAGGAGATTCTTGG+AGG | - | chr1.4:76870088-76870107 | MS.gene006172:intron | 45.0% | |
| ! | GAAAATTCTAGTGGTGGAGC+TGG | - | chr1.4:76870857-76870876 | MS.gene006172:intron | 45.0% |
| ! | GACCTTTTGGTCCATTCTCT+TGG | + | chr1.4:76870640-76870659 | None:intergenic | 45.0% |
| ! | GGCGCTTTTAAGCATACGAT+CGG | - | chr1.4:76868405-76868424 | MS.gene006172:CDS | 45.0% |
| ! | TCGTCACCAATTGTTGTTGC+TGG | + | chr1.4:76870493-76870512 | None:intergenic | 45.0% |
| !! | ATTGTTGTTGCTGGTGTTGC+GGG | + | chr1.4:76870484-76870503 | None:intergenic | 45.0% |
| !! | GACTCAGCTGTTTTAAGTGG+TGG | - | chr1.4:76868214-76868233 | MS.gene006172:CDS | 45.0% |
| !! | GGTGACTCAGCTGTTTTAAG+TGG | - | chr1.4:76868211-76868230 | MS.gene006172:CDS | 45.0% |
| !! | GTTGGTGCTACACTTCTTTG+TGG | + | chr1.4:76870365-76870384 | None:intergenic | 45.0% |
| !! | TCAGCTGTTTTAAGTGGTGG+CGG | - | chr1.4:76868217-76868236 | MS.gene006172:CDS | 45.0% |
| !! | TGGTGGTAACTTTGAGGTAG+TGG | - | chr1.4:76871081-76871100 | MS.gene006172:CDS | 45.0% |
| !! | TGTTGTGTTTGTTGTGGTGG+CGG | + | chr1.4:76870323-76870342 | None:intergenic | 45.0% |
| !!! | TTTACTTTTTTTTTTTTTTT+TGG | - | chr1.4:76869404-76869423 | MS.gene006172:CDS | 5.0% |
| AACGTAGCTTCGGTGGTAAC+CGG | - | chr1.4:76868362-76868381 | MS.gene006172:CDS | 50.0% | |
| AAGAGAACCAAAGATGGCCG+AGG | - | chr1.4:76869534-76869553 | MS.gene006172:CDS | 50.0% | |
| AGCGCCAAAGTTTCTTGTCG+CGG | + | chr1.4:76868391-76868410 | None:intergenic | 50.0% | |
| AGCTGCACCACCTAACATGA+CGG | - | chr1.4:76868264-76868283 | MS.gene006172:CDS | 50.0% | |
| AGTGGCAAACAAACCTGCAG+TGG | - | chr1.4:76871099-76871118 | MS.gene006172:CDS | 50.0% | |
| ATGGACCAAAAGGTCCTCTC+TGG | - | chr1.4:76870645-76870664 | MS.gene006172:intron | 50.0% | |
| CGGAAGAAGGATCTCGAAAG+AGG | - | chr1.4:76870003-76870022 | MS.gene006172:intron | 50.0% | |
| CTCGAAAGAGGAAGCGGAAA+TGG | - | chr1.4:76870015-76870034 | MS.gene006172:intron | 50.0% | |
| GACGTCTTCCGAAGACACAA+CGG | - | chr1.4:76869983-76870002 | MS.gene006172:intron | 50.0% | |
| GACTATTGTTGGGCCCAACT+TGG | + | chr1.4:76870462-76870481 | None:intergenic | 50.0% | |
| GATAACATGGAGCAGAACCG+TGG | - | chr1.4:76870968-76870987 | MS.gene006172:CDS | 50.0% | |
| GTAGGAGCTAGCCATGGAAT+TGG | + | chr1.4:76869961-76869980 | None:intergenic | 50.0% | |
| GTGGCAAACAAACCTGCAGT+GGG | - | chr1.4:76871100-76871119 | MS.gene006172:CDS | 50.0% | |
| TCCGAAGACACAACGGAAGA+AGG | - | chr1.4:76869990-76870009 | MS.gene006172:intron | 50.0% | |
| TGGACCAAAAGGTCCTCTCT+GGG | - | chr1.4:76870646-76870665 | MS.gene006172:intron | 50.0% | |
| TGTAGCACCAACACCAACAC+CGG | - | chr1.4:76870373-76870392 | MS.gene006172:intron | 50.0% | |
| TTATCTTCTCCCTGCTGAGG+TGG | + | chr1.4:76870953-76870972 | None:intergenic | 50.0% | |
| ! | GGTGCTACACTTCTTTGTGG+TGG | + | chr1.4:76870362-76870381 | None:intergenic | 50.0% |
| ! | GGTGTTGCGGGACTATTGTT+GGG | + | chr1.4:76870472-76870491 | None:intergenic | 50.0% |
| ! | TTTTCCACCTCGGCCATCTT+TGG | + | chr1.4:76869544-76869563 | None:intergenic | 50.0% |
| !! | ACTGATATTGGTGCTACCGC+CGG | + | chr1.4:76870395-76870414 | None:intergenic | 50.0% |
| !! | ATGGATGAAAGTGGTGGTGG+TGG | - | chr1.4:76871058-76871077 | MS.gene006172:CDS | 50.0% |
| !! | GAAGAGGGTTGGTGGAAGTA+GGG | + | chr1.4:76869905-76869924 | None:intergenic | 50.0% |
| !! | GGTGTTGGTGCCGAAATTTG+TGG | + | chr1.4:76869672-76869691 | None:intergenic | 50.0% |
| !! | GTTGGTGCCGAAATTTGTGG+TGG | + | chr1.4:76869669-76869688 | None:intergenic | 50.0% |
| !! | TGGTGGTGGTGGTAACTTTG+AGG | - | chr1.4:76871075-76871094 | MS.gene006172:CDS | 50.0% |
| !! | TGGTGTTGCGGGACTATTGT+TGG | + | chr1.4:76870473-76870492 | None:intergenic | 50.0% |
| AAGTTTCTTGTCGCGGCCAC+CGG | + | chr1.4:76868384-76868403 | None:intergenic | 55.0% | |
| ACCAAAAGGTCCTCTCTGGG+AGG | - | chr1.4:76870649-76870668 | MS.gene006172:intron | 55.0% | |
| AGAACCAAAGATGGCCGAGG+TGG | - | chr1.4:76869537-76869556 | MS.gene006172:CDS | 55.0% | |
| GAGGGATGAGTTCGTCAAGG+TGG | - | chr1.4:76870558-76870577 | MS.gene006172:intron | 55.0% | |
| GATGGTGAACGTAGCTTCGG+TGG | - | chr1.4:76868355-76868374 | MS.gene006172:CDS | 55.0% | |
| GGCCGAGGTGGAAAATCAGA+TGG | - | chr1.4:76869549-76869568 | MS.gene006172:CDS | 55.0% | |
| GGCGGTAGCACCAATATCAG+TGG | - | chr1.4:76870394-76870413 | MS.gene006172:intron | 55.0% | |
| GGTCATTGAGAAACGCGAGC+AGG | - | chr1.4:76870109-76870128 | MS.gene006172:intron | 55.0% | |
| GTCTTCGGAAGACGTCGAGT+AGG | + | chr1.4:76869979-76869998 | None:intergenic | 55.0% | |
| GTGGCCGCGACAAGAAACTT+TGG | - | chr1.4:76868384-76868403 | MS.gene006172:CDS | 55.0% | |
| TGCACCACCTAACATGACGG+CGG | - | chr1.4:76868267-76868286 | MS.gene006172:CDS | 55.0% | |
| TGCTCCGGCTGAACCATCAA+CGG | + | chr1.4:76870920-76870939 | None:intergenic | 55.0% | |
| TGGGAGGGATGAGTTCGTCA+AGG | - | chr1.4:76870555-76870574 | MS.gene006172:intron | 55.0% | |
| ! | TCCTCCCAGAGAGGACCTTT+TGG | + | chr1.4:76870653-76870672 | None:intergenic | 55.0% |
| !! | GATGAAAGTGGTGGTGGTGG+TGG | - | chr1.4:76871061-76871080 | MS.gene006172:CDS | 55.0% |
| !! | GGAAGAGGGTTGGTGGAAGT+AGG | + | chr1.4:76869906-76869925 | None:intergenic | 55.0% |
| !! | TGTGTTTGTTGTGGTGGCGG+TGG | + | chr1.4:76870320-76870339 | None:intergenic | 55.0% |
| !!! | GCTGTTTTAAGTGGTGGCGG+TGG | - | chr1.4:76868220-76868239 | MS.gene006172:CDS | 55.0% |
| AACATGACGGCGGAAGGTGG+TGG | - | chr1.4:76868277-76868296 | MS.gene006172:CDS | 60.0% | |
| AGCACCAACACCAACACCGG+CGG | - | chr1.4:76870376-76870395 | MS.gene006172:intron | 60.0% | |
| CATGGAGCAGAACCGTGGAC+AGG | - | chr1.4:76870973-76870992 | MS.gene006172:CDS | 60.0% | |
| CCACCTAACATGACGGCGGA+AGG | - | chr1.4:76868271-76868290 | MS.gene006172:CDS | 60.0% | |
| CCACCTTCCGCCGTCATGTT+AGG | + | chr1.4:76868277-76868296 | None:intergenic | 60.0% | |
| CCTAACATGACGGCGGAAGG+TGG | - | chr1.4:76868274-76868293 | MS.gene006172:CDS | 60.0% | |
| CCTTCCGCCGTCATGTTAGG+TGG | + | chr1.4:76868274-76868293 | None:intergenic | 60.0% | |
| CGTCGAGTAGGAGCTAGCCA+TGG | + | chr1.4:76869967-76869986 | None:intergenic | 60.0% | |
| CTAGCTGATGCACCCACTGC+AGG | + | chr1.4:76871115-76871134 | None:intergenic | 60.0% | |
| GTAGCTTCGGTGGTAACCGG+TGG | - | chr1.4:76868365-76868384 | MS.gene006172:CDS | 60.0% | |
| GTTGGGCCCAACTTGGTTGC+CGG | + | chr1.4:76870455-76870474 | None:intergenic | 60.0% | |
| TGGTTCAGCCGGAGCAGCAA+TGG | - | chr1.4:76870924-76870943 | MS.gene006172:CDS | 60.0% | |
| TTCAGCCGGAGCAGCAATGG+CGG | - | chr1.4:76870927-76870946 | MS.gene006172:CDS | 60.0% | |
| TTGGGCCCAACTTGGTTGCC+GGG | + | chr1.4:76870454-76870473 | None:intergenic | 60.0% | |
| !! | ATTGGTGCTACCGCCGGTGT+TGG | + | chr1.4:76870389-76870408 | None:intergenic | 60.0% |
| !! | GAAAGTGGTGGTGGTGGTGG+TGG | - | chr1.4:76871064-76871083 | MS.gene006172:CDS | 60.0% |
| !! | GGCACCGTTGATGGTTCAGC+CGG | - | chr1.4:76870913-76870932 | MS.gene006172:CDS | 60.0% |
| !! | TGGAGCTGGTTCGAACCAGG+TGG | - | chr1.4:76870871-76870890 | MS.gene006172:CDS | 60.0% |
| !! | TGGTGGAGCTGGTTCGAACC+AGG | - | chr1.4:76870868-76870887 | MS.gene006172:CDS | 60.0% |
| ACCACCCCCGGCAACCAAGT+TGG | - | chr1.4:76870445-76870464 | MS.gene006172:intron | 65.0% | |
| CAATGGCGGCCACCTCAGCA+GGG | - | chr1.4:76870941-76870960 | MS.gene006172:CDS | 65.0% | |
| CCACCCCCGGCAACCAAGTT+GGG | - | chr1.4:76870446-76870465 | MS.gene006172:intron | 65.0% | |
| GAGCATGGCGGCACCGTTGA+TGG | - | chr1.4:76870904-76870923 | MS.gene006172:CDS | 65.0% | |
| TGGGCCCAACTTGGTTGCCG+GGG | + | chr1.4:76870453-76870472 | None:intergenic | 65.0% | |
| ! | ATGACGGCGGAAGGTGGTGG+TGG | - | chr1.4:76868280-76868299 | MS.gene006172:CDS | 65.0% |
| !! | AACGGTGCCGCCATGCTCTC+GGG | + | chr1.4:76870902-76870921 | None:intergenic | 65.0% |
| !! | CAACGGTGCCGCCATGCTCT+CGG | + | chr1.4:76870903-76870922 | None:intergenic | 65.0% |
| !! | GCTACCGCCGGTGTTGGTGT+TGG | + | chr1.4:76870383-76870402 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGAGT+TGG | - | chr1.4:76868292-76868311 | MS.gene006172:CDS | 65.0% |
| ACCGCCAGCACAACCACCCC+CGG | - | chr1.4:76870433-76870452 | MS.gene006172:intron | 70.0% | |
| CCCAACTTGGTTGCCGGGGG+TGG | + | chr1.4:76870449-76870468 | None:intergenic | 70.0% | |
| GCAATGGCGGCCACCTCAGC+AGG | - | chr1.4:76870940-76870959 | MS.gene006172:CDS | 70.0% | |
| GGGCCCAACTTGGTTGCCGG+GGG | + | chr1.4:76870452-76870471 | None:intergenic | 70.0% | |
| GGTGCAGCTGCTGCTGCTGC+TGG | + | chr1.4:76868253-76868272 | None:intergenic | 70.0% | |
| GGTGGCCGCCATTGCTGCTC+CGG | + | chr1.4:76870935-76870954 | None:intergenic | 70.0% | |
| GGTGGTGCAGCCCGAGAGCA+TGG | - | chr1.4:76870889-76870908 | MS.gene006172:CDS | 70.0% | |
| GTTGCCGGGGGTGGTTGTGC+TGG | + | chr1.4:76870440-76870459 | None:intergenic | 70.0% | |
| TGCTCTCGGGCTGCACCACC+TGG | + | chr1.4:76870889-76870908 | None:intergenic | 70.0% | |
| ! | GGTGCAGCCCGAGAGCATGG+CGG | - | chr1.4:76870892-76870911 | MS.gene006172:CDS | 70.0% |
| !! | ACGGCGGAAGGTGGTGGTGG+TGG | - | chr1.4:76868283-76868302 | MS.gene006172:CDS | 70.0% |
| !! | GCGGAAGGTGGTGGTGGTGG+TGG | - | chr1.4:76868286-76868305 | MS.gene006172:CDS | 70.0% |
| GCCGGGGGTGGTTGTGCTGG+CGG | + | chr1.4:76870437-76870456 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 76868205 | 76871144 | 76868205 | ID=MS.gene006172 |
| chr1.4 | mRNA | 76868205 | 76871144 | 76868205 | ID=MS.gene006172.t1;Parent=MS.gene006172 |
| chr1.4 | exon | 76870861 | 76871144 | 76870861 | ID=MS.gene006172.t1.exon1;Parent=MS.gene006172.t1 |
| chr1.4 | CDS | 76870861 | 76871144 | 76870861 | ID=cds.MS.gene006172.t1;Parent=MS.gene006172.t1 |
| chr1.4 | exon | 76868205 | 76869891 | 76868205 | ID=MS.gene006172.t1.exon2;Parent=MS.gene006172.t1 |
| chr1.4 | CDS | 76868205 | 76869891 | 76868205 | ID=cds.MS.gene006172.t1;Parent=MS.gene006172.t1 |
| Gene Sequence |
| Protein sequence |
