Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00627.t1 | XP_003592973.1 | 87.9 | 481 | 28 | 6 | 1 | 476 | 1 | 456 | 5.20E-237 | 830.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00627.t1 | Q84WU6 | 38.3 | 394 | 188 | 10 | 10 | 358 | 16 | 399 | 1.3e-66 | 255.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00627.t1 | G7INP6 | 87.9 | 481 | 28 | 6 | 1 | 476 | 1 | 456 | 3.8e-237 | 830.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene00627.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00627.t1 | MTR_2g006270 | 86.486 | 481 | 35 | 5 | 1 | 476 | 1 | 456 | 0.0 | 832 |
MS.gene00627.t1 | MTR_2g006380 | 70.417 | 480 | 95 | 11 | 7 | 476 | 14 | 456 | 0.0 | 657 |
MS.gene00627.t1 | MTR_1g058210 | 49.891 | 459 | 198 | 10 | 6 | 455 | 5 | 440 | 4.20e-134 | 395 |
MS.gene00627.t1 | MTR_5g061220 | 45.665 | 519 | 204 | 13 | 7 | 458 | 13 | 520 | 1.71e-133 | 396 |
MS.gene00627.t1 | MTR_2g024430 | 45.580 | 509 | 214 | 13 | 6 | 461 | 13 | 511 | 5.61e-130 | 387 |
MS.gene00627.t1 | MTR_5g040880 | 44.015 | 518 | 218 | 13 | 3 | 458 | 1 | 508 | 3.91e-120 | 362 |
MS.gene00627.t1 | MTR_5g082140 | 43.376 | 468 | 239 | 13 | 5 | 459 | 4 | 458 | 2.05e-107 | 327 |
MS.gene00627.t1 | MTR_5g040740 | 42.765 | 463 | 191 | 12 | 5 | 459 | 4 | 400 | 5.50e-103 | 314 |
MS.gene00627.t1 | MTR_3g073420 | 35.149 | 569 | 257 | 17 | 5 | 476 | 11 | 564 | 6.39e-93 | 293 |
MS.gene00627.t1 | MTR_5g061890 | 45.198 | 354 | 164 | 13 | 7 | 346 | 6 | 343 | 6.30e-89 | 277 |
MS.gene00627.t1 | MTR_5g060780 | 45.042 | 353 | 164 | 13 | 7 | 344 | 6 | 343 | 6.72e-89 | 277 |
MS.gene00627.t1 | MTR_5g460920 | 45.042 | 353 | 164 | 13 | 7 | 344 | 6 | 343 | 1.09e-87 | 274 |
MS.gene00627.t1 | MTR_5g060630 | 41.388 | 418 | 176 | 15 | 6 | 363 | 5 | 413 | 1.38e-80 | 259 |
MS.gene00627.t1 | MTR_5g460740 | 41.388 | 418 | 176 | 15 | 6 | 363 | 5 | 413 | 1.38e-80 | 259 |
MS.gene00627.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 10 | 399 | 5.76e-80 | 261 |
MS.gene00627.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 10 | 399 | 7.29e-80 | 262 |
MS.gene00627.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 66 | 455 | 1.96e-79 | 262 |
MS.gene00627.t1 | MTR_4g058930 | 36.740 | 411 | 191 | 11 | 4 | 355 | 3 | 403 | 4.98e-76 | 251 |
MS.gene00627.t1 | MTR_4g058930 | 36.740 | 411 | 191 | 11 | 4 | 355 | 3 | 403 | 6.44e-76 | 251 |
MS.gene00627.t1 | MTR_1g094960 | 38.035 | 397 | 186 | 13 | 13 | 358 | 19 | 406 | 8.92e-74 | 244 |
MS.gene00627.t1 | MTR_1g064430 | 35.075 | 402 | 191 | 11 | 12 | 353 | 26 | 417 | 9.36e-74 | 246 |
MS.gene00627.t1 | MTR_1g064430 | 35.075 | 402 | 191 | 11 | 12 | 353 | 39 | 430 | 1.48e-73 | 245 |
MS.gene00627.t1 | MTR_7g101280 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 8.17e-68 | 229 |
MS.gene00627.t1 | MTR_0041s0110 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 8.17e-68 | 229 |
MS.gene00627.t1 | MTR_7g101275 | 39.423 | 312 | 158 | 12 | 23 | 316 | 2 | 300 | 8.63e-58 | 196 |
MS.gene00627.t1 | MTR_5g062970 | 49.268 | 205 | 93 | 4 | 13 | 214 | 38 | 234 | 4.02e-56 | 187 |
MS.gene00627.t1 | MTR_8g100050 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 3.46e-51 | 185 |
MS.gene00627.t1 | MTR_0041s0120 | 35.168 | 327 | 173 | 11 | 23 | 321 | 2 | 317 | 3.54e-51 | 179 |
MS.gene00627.t1 | MTR_8g100050 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 1.69e-50 | 184 |
MS.gene00627.t1 | MTR_8g079492 | 33.711 | 353 | 212 | 9 | 13 | 349 | 23 | 369 | 4.47e-48 | 177 |
MS.gene00627.t1 | MTR_8g079492 | 33.711 | 353 | 212 | 9 | 13 | 349 | 23 | 369 | 4.93e-48 | 177 |
MS.gene00627.t1 | MTR_4g124900 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 5.09e-48 | 178 |
MS.gene00627.t1 | MTR_4g124900 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 6.28e-48 | 177 |
MS.gene00627.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 1.99e-47 | 173 |
MS.gene00627.t1 | MTR_2g018690 | 32.670 | 352 | 218 | 8 | 13 | 349 | 23 | 370 | 3.08e-47 | 175 |
MS.gene00627.t1 | MTR_2g043250 | 32.768 | 354 | 211 | 10 | 10 | 348 | 20 | 361 | 4.30e-47 | 175 |
MS.gene00627.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 5.04e-47 | 173 |
MS.gene00627.t1 | MTR_3g064050 | 31.842 | 380 | 239 | 8 | 13 | 379 | 26 | 398 | 5.41e-47 | 174 |
MS.gene00627.t1 | MTR_5g076270 | 32.295 | 353 | 218 | 8 | 13 | 349 | 24 | 371 | 7.85e-46 | 171 |
MS.gene00627.t1 | MTR_2g005240 | 32.500 | 360 | 218 | 9 | 13 | 356 | 23 | 373 | 4.05e-45 | 167 |
MS.gene00627.t1 | MTR_1g024025 | 33.529 | 340 | 207 | 9 | 13 | 338 | 43 | 377 | 9.36e-45 | 168 |
MS.gene00627.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 7.69e-44 | 164 |
MS.gene00627.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 7.72e-44 | 164 |
MS.gene00627.t1 | MTR_8g101360 | 32.479 | 351 | 217 | 10 | 5 | 340 | 23 | 368 | 5.23e-43 | 163 |
MS.gene00627.t1 | MTR_4g021580 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 2.07e-41 | 156 |
MS.gene00627.t1 | MTR_4g021580 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 2.71e-41 | 156 |
MS.gene00627.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 4.85e-41 | 156 |
MS.gene00627.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 7.87e-41 | 156 |
MS.gene00627.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 7.94e-41 | 156 |
MS.gene00627.t1 | MTR_8g027440 | 31.065 | 338 | 212 | 9 | 13 | 337 | 29 | 358 | 1.28e-39 | 152 |
MS.gene00627.t1 | MTR_7g062540 | 28.647 | 377 | 243 | 9 | 13 | 373 | 14 | 380 | 1.65e-39 | 152 |
MS.gene00627.t1 | MTR_4g060460 | 28.894 | 398 | 247 | 10 | 13 | 388 | 54 | 437 | 3.21e-38 | 148 |
MS.gene00627.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 9.32e-38 | 147 |
MS.gene00627.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.32e-37 | 146 |
MS.gene00627.t1 | MTR_4g060460 | 30.435 | 368 | 228 | 10 | 13 | 356 | 54 | 417 | 1.45e-37 | 146 |
MS.gene00627.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.78e-37 | 146 |
MS.gene00627.t1 | MTR_8g079492 | 33.448 | 290 | 172 | 8 | 76 | 349 | 3 | 287 | 2.98e-36 | 143 |
MS.gene00627.t1 | MTR_5g046120 | 58.333 | 120 | 40 | 6 | 51 | 165 | 9 | 123 | 8.18e-33 | 121 |
MS.gene00627.t1 | MTR_5g060770 | 35.461 | 282 | 119 | 12 | 66 | 337 | 8 | 236 | 6.82e-32 | 125 |
MS.gene00627.t1 | MTR_8g446900 | 29.021 | 286 | 177 | 9 | 67 | 337 | 14 | 288 | 1.06e-26 | 111 |
MS.gene00627.t1 | MTR_2g093740 | 31.799 | 239 | 149 | 5 | 117 | 343 | 38 | 274 | 3.12e-26 | 112 |
MS.gene00627.t1 | MTR_2g093740 | 32.189 | 233 | 144 | 5 | 117 | 337 | 38 | 268 | 3.79e-26 | 112 |
MS.gene00627.t1 | MTR_5g062960 | 44.295 | 149 | 65 | 7 | 239 | 375 | 1 | 143 | 1.32e-24 | 101 |
MS.gene00627.t1 | MTR_2g093740 | 30.159 | 252 | 149 | 6 | 117 | 343 | 38 | 287 | 4.51e-23 | 102 |
MS.gene00627.t1 | MTR_2g093740 | 30.488 | 246 | 144 | 6 | 117 | 337 | 38 | 281 | 4.53e-23 | 103 |
MS.gene00627.t1 | MTR_5g460910 | 30.169 | 295 | 118 | 14 | 56 | 338 | 14 | 232 | 3.88e-19 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00627.t1 | AT1G77850 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 3.85e-85 | 273 |
MS.gene00627.t1 | AT1G77850 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 3.89e-85 | 273 |
MS.gene00627.t1 | AT4G30080 | 37.157 | 401 | 187 | 13 | 12 | 358 | 18 | 407 | 1.21e-73 | 245 |
MS.gene00627.t1 | AT2G28350 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 1.42e-72 | 242 |
MS.gene00627.t1 | AT2G28350 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 2.12e-72 | 242 |
MS.gene00627.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.14e-49 | 180 |
MS.gene00627.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.29e-49 | 179 |
MS.gene00627.t1 | AT5G37020 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 2.82e-48 | 177 |
MS.gene00627.t1 | AT5G37020 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 4.17e-48 | 177 |
MS.gene00627.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.78e-47 | 175 |
MS.gene00627.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.78e-47 | 175 |
MS.gene00627.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 23 | 370 | 4.10e-47 | 175 |
MS.gene00627.t1 | AT5G62000 | 32.266 | 406 | 253 | 11 | 13 | 403 | 61 | 459 | 5.09e-47 | 174 |
MS.gene00627.t1 | AT5G62000 | 34.349 | 361 | 213 | 12 | 13 | 356 | 61 | 414 | 7.88e-47 | 174 |
MS.gene00627.t1 | AT5G62000 | 34.349 | 361 | 213 | 12 | 13 | 356 | 61 | 414 | 7.88e-47 | 174 |
MS.gene00627.t1 | AT5G62000 | 34.349 | 361 | 213 | 12 | 13 | 356 | 61 | 414 | 7.88e-47 | 174 |
MS.gene00627.t1 | AT5G62000 | 34.349 | 361 | 213 | 12 | 13 | 356 | 61 | 414 | 7.88e-47 | 174 |
MS.gene00627.t1 | AT5G20730 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 1.19e-46 | 174 |
MS.gene00627.t1 | AT5G20730 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 1.31e-46 | 174 |
MS.gene00627.t1 | AT2G33860 | 31.988 | 347 | 202 | 9 | 13 | 337 | 54 | 388 | 1.54e-46 | 171 |
MS.gene00627.t1 | AT2G46530 | 31.421 | 366 | 229 | 9 | 13 | 364 | 21 | 378 | 2.47e-46 | 170 |
MS.gene00627.t1 | AT2G46530 | 31.421 | 366 | 229 | 9 | 13 | 364 | 42 | 399 | 4.00e-46 | 169 |
MS.gene00627.t1 | AT5G20730 | 32.687 | 361 | 216 | 10 | 3 | 348 | 14 | 362 | 4.72e-46 | 172 |
MS.gene00627.t1 | AT1G34310 | 33.237 | 346 | 200 | 9 | 8 | 337 | 22 | 352 | 4.91e-45 | 166 |
MS.gene00627.t1 | AT3G61830 | 31.680 | 363 | 218 | 10 | 13 | 356 | 25 | 376 | 5.33e-45 | 166 |
MS.gene00627.t1 | AT1G19850 | 34.294 | 347 | 202 | 11 | 10 | 338 | 40 | 378 | 2.41e-44 | 167 |
MS.gene00627.t1 | AT1G19850 | 34.294 | 347 | 202 | 11 | 10 | 338 | 51 | 389 | 2.91e-44 | 167 |
MS.gene00627.t1 | AT1G34390 | 32.659 | 346 | 200 | 10 | 8 | 337 | 22 | 350 | 8.68e-44 | 163 |
MS.gene00627.t1 | AT1G35520 | 32.174 | 345 | 215 | 8 | 3 | 337 | 17 | 352 | 8.94e-44 | 162 |
MS.gene00627.t1 | AT5G60450 | 31.445 | 353 | 212 | 8 | 8 | 337 | 36 | 381 | 1.81e-43 | 164 |
MS.gene00627.t1 | AT1G19220 | 30.833 | 360 | 220 | 10 | 4 | 348 | 16 | 361 | 1.96e-43 | 164 |
MS.gene00627.t1 | AT5G60450 | 31.609 | 348 | 208 | 8 | 13 | 337 | 65 | 405 | 4.11e-43 | 163 |
MS.gene00627.t1 | AT1G35540 | 32.456 | 342 | 208 | 10 | 8 | 337 | 22 | 352 | 2.20e-42 | 159 |
MS.gene00627.t1 | AT1G35240 | 32.353 | 340 | 211 | 8 | 8 | 337 | 22 | 352 | 3.69e-42 | 158 |
MS.gene00627.t1 | AT1G34410 | 31.765 | 340 | 213 | 8 | 8 | 337 | 22 | 352 | 1.42e-41 | 157 |
MS.gene00627.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 1.83e-40 | 154 |
MS.gene00627.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.07e-40 | 154 |
MS.gene00627.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.07e-40 | 154 |
MS.gene00627.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.19e-40 | 154 |
MS.gene00627.t1 | AT1G34170 | 30.372 | 349 | 222 | 9 | 1 | 337 | 13 | 352 | 4.98e-40 | 151 |
MS.gene00627.t1 | AT1G34170 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 1.24e-37 | 144 |
MS.gene00627.t1 | AT1G34170 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 4.21e-37 | 143 |
MS.gene00627.t1 | AT3G61830 | 31.392 | 309 | 182 | 10 | 67 | 356 | 28 | 325 | 5.13e-32 | 129 |
MS.gene00627.t1 | AT5G37020 | 32.584 | 267 | 165 | 7 | 117 | 370 | 31 | 295 | 3.74e-31 | 127 |
MS.gene00627.t1 | AT1G43950 | 34.259 | 216 | 121 | 5 | 8 | 217 | 22 | 222 | 5.35e-30 | 117 |
MS.gene00627.t1 | AT2G33860 | 32.479 | 234 | 141 | 6 | 117 | 337 | 2 | 231 | 6.61e-30 | 122 |
MS.gene00627.t1 | AT2G46530 | 31.679 | 262 | 164 | 7 | 114 | 364 | 34 | 291 | 3.65e-29 | 120 |
Find 100 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCGTACTTCTAATTTA+TGG | 0.108193 | 2.1:+75703308 | MS.gene00627:CDS |
TTTGAATATCGTAGGTTAAT+TGG | 0.128409 | 2.1:+75704657 | MS.gene00627:intron |
GATGGTTCAATTATGTTATT+TGG | 0.174464 | 2.1:+75705016 | MS.gene00627:CDS |
GCACATGTGTGCCAAATTTC+TGG | 0.215696 | 2.1:-75702428 | None:intergenic |
CGCATGTGCGTCCAGAAATT+TGG | 0.217939 | 2.1:+75702417 | MS.gene00627:CDS |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2.1:-75703238 | None:intergenic |
GATTGGCAACCTCTTCTTTA+GGG | 0.275578 | 2.1:-75702694 | None:intergenic |
AGATTGGCAACCTCTTCTTT+AGG | 0.275924 | 2.1:-75702695 | None:intergenic |
TAATTTATGGCGCATGCTTC+AGG | 0.288610 | 2.1:+75703321 | MS.gene00627:CDS |
ATAGAGATTGTCCCTTGATA+TGG | 0.294890 | 2.1:-75703283 | None:intergenic |
AGATGGACATCGTTGGTTAT+TGG | 0.309930 | 2.1:-75702665 | None:intergenic |
TTGAATATCGTAGGTTAATT+GGG | 0.314702 | 2.1:+75704658 | MS.gene00627:intron |
TGCCCAACTAAGTGATAAAA+AGG | 0.319098 | 2.1:+75704802 | MS.gene00627:CDS |
CTGTTCGTTACCGACGTTCA+TGG | 0.320691 | 2.1:+75702863 | MS.gene00627:CDS |
TTCATCGCGGTTGTTGAGAT+TGG | 0.361556 | 2.1:-75702711 | None:intergenic |
TAAACTCTTGAATGCAACTT+TGG | 0.370692 | 2.1:-75702470 | None:intergenic |
GATATATAACATGTTTCTCT+TGG | 0.384809 | 2.1:-75702924 | None:intergenic |
AATGGAATTCGTTTGTTAAG+AGG | 0.398429 | 2.1:+75702951 | MS.gene00627:CDS |
CAGAGGAGTTCAAAATAATA+TGG | 0.402834 | 2.1:-75704946 | None:intergenic |
TCAACGGGAAAGTTATTTGT+TGG | 0.427846 | 2.1:+75703016 | MS.gene00627:CDS |
CAACGGGAAAGTTATTTGTT+GGG | 0.431447 | 2.1:+75703017 | MS.gene00627:CDS |
GCAGTTTGTTGCAGCGGCGG+CGG | 0.440577 | 2.1:+75703054 | MS.gene00627:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2.1:+75703090 | MS.gene00627:CDS |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2.1:-75703237 | None:intergenic |
ATGAATCAATGAAGATTCAA+TGG | 0.450458 | 2.1:+75703212 | MS.gene00627:CDS |
TGAGTCTTTCATGAAAATAA+CGG | 0.452973 | 2.1:-75702996 | None:intergenic |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2.1:+75703257 | MS.gene00627:CDS |
CAGGTGTTGAGACGAGGATT+CGG | 0.457588 | 2.1:-75702843 | None:intergenic |
TTGGGATGAATTTCAAGTCT+CGG | 0.458166 | 2.1:+75704676 | MS.gene00627:CDS |
ACTATCCTCGAGGGGATGAT+TGG | 0.466368 | 2.1:+75703158 | MS.gene00627:CDS |
AGTCAACCCGTGGTGGGTTG+AGG | 0.468552 | 2.1:+75704712 | MS.gene00627:CDS |
CACGCAGTTTGTTGCAGCGG+CGG | 0.472211 | 2.1:+75703051 | MS.gene00627:CDS |
CATGAACGTCGGTAACGAAC+AGG | 0.475779 | 2.1:-75702862 | None:intergenic |
ATATATAACATGTTTCTCTT+GGG | 0.481990 | 2.1:-75702923 | None:intergenic |
TAGAGATTGTCCCTTGATAT+GGG | 0.482488 | 2.1:-75703282 | None:intergenic |
AAAAGAGTGTGTGTGGGTAA+TGG | 0.489755 | 2.1:-75702543 | None:intergenic |
TCTCATATCAAGGGAGATGA+TGG | 0.490070 | 2.1:+75705076 | MS.gene00627:CDS |
CACCACGGGTTGACTCGTCT+TGG | 0.505317 | 2.1:-75704704 | None:intergenic |
TGCCGATCCTCACACGGATG+AGG | 0.509768 | 2.1:+75702619 | MS.gene00627:CDS |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2.1:+75703271 | MS.gene00627:CDS |
AGTTATTTGTTGGGATTCGC+AGG | 0.513561 | 2.1:+75703026 | MS.gene00627:CDS |
AAGCCGCGGGAAGACATTAT+CGG | 0.516617 | 2.1:-75702810 | None:intergenic |
AGTAATGGAGGCATTGAAGT+TGG | 0.517015 | 2.1:+75703105 | MS.gene00627:CDS |
GACCTCATCCGTGTGAGGAT+CGG | 0.528604 | 2.1:-75702621 | None:intergenic |
TTTCACAATTCTCATATCAA+GGG | 0.529587 | 2.1:+75705067 | MS.gene00627:CDS |
ACATGTTATATATCTCTGAA+TGG | 0.530162 | 2.1:+75702933 | MS.gene00627:CDS |
AGCGGCGGCGGAGCAGAAGA+AGG | 0.532222 | 2.1:+75703066 | MS.gene00627:CDS |
AAGAGGAAGAAACTCGTGGC+TGG | 0.538632 | 2.1:+75702968 | MS.gene00627:CDS |
GGAGCAGAAGAAGGATGAGT+TGG | 0.543711 | 2.1:+75703075 | MS.gene00627:CDS |
GGTGATACTTTATCATGTAT+AGG | 0.550061 | 2.1:-75704917 | None:intergenic |
TGGGAAACCCGCGGCAGACA+TGG | 0.563883 | 2.1:-75702904 | None:intergenic |
AAATTGTTTACTATCCTCGA+GGG | 0.568194 | 2.1:+75703149 | MS.gene00627:CDS |
CGGCACAAAAGCGAGGTATG+TGG | 0.571206 | 2.1:-75702790 | None:intergenic |
GAAGAAGGATGAGTTGGAGA+AGG | 0.573545 | 2.1:+75703081 | MS.gene00627:CDS |
AGAGTGTGTGTGGGTAATGG+AGG | 0.575190 | 2.1:-75702540 | None:intergenic |
GAGACGAGGATTCGGCCTCT+AGG | 0.578409 | 2.1:-75702835 | None:intergenic |
ATTTCTGGACGCACATGCGA+TGG | 0.580120 | 2.1:-75702413 | None:intergenic |
TCTTGAAAACCCTAAAGAAG+AGG | 0.581476 | 2.1:+75702685 | MS.gene00627:CDS |
TCTCCTTGCCGATCCTCACA+CGG | 0.588085 | 2.1:+75702613 | MS.gene00627:CDS |
CTTCCCGCGGCTTGACCTAG+AGG | 0.588102 | 2.1:+75702820 | MS.gene00627:CDS |
AATGGAGGCATTGAAGTTGG+CGG | 0.590740 | 2.1:+75703108 | MS.gene00627:CDS |
AATGAGATCACTTCAACGGA+AGG | 0.592309 | 2.1:+75704860 | MS.gene00627:CDS |
GAAGTTGGCGGAAGAGAACA+AGG | 0.600106 | 2.1:+75703120 | MS.gene00627:CDS |
GTTCTGATGTTAACAATGCT+CGG | 0.602948 | 2.1:+75702762 | MS.gene00627:CDS |
AAATAACCTCAACCCACCAC+GGG | 0.608942 | 2.1:-75704718 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2.1:+75703272 | MS.gene00627:CDS |
GAGACGATACAAGGAGTGAA+AGG | 0.609567 | 2.1:-75702581 | None:intergenic |
TTTGTAGAAAAGAGTGTGTG+TGG | 0.609647 | 2.1:-75702550 | None:intergenic |
GAACACGCAGTTTGTTGCAG+CGG | 0.616426 | 2.1:+75703048 | MS.gene00627:CDS |
TTTGAATGAGATCACTTCAA+CGG | 0.618869 | 2.1:+75704856 | MS.gene00627:CDS |
GTGTTGCAATTGTGAGTCGA+AGG | 0.619072 | 2.1:-75704980 | None:intergenic |
CGGCCTCTAGGTCAAGCCGC+GGG | 0.620797 | 2.1:-75702823 | None:intergenic |
CGAAGGAAACTTTGTCTCAG+AGG | 0.621557 | 2.1:-75704963 | None:intergenic |
TCAACAGCTGAGACGATACA+AGG | 0.622390 | 2.1:-75702590 | None:intergenic |
GAAATTGTTTACTATCCTCG+AGG | 0.624214 | 2.1:+75703148 | MS.gene00627:CDS |
GTTGGAGAAGGCAGTAATGG+AGG | 0.624776 | 2.1:+75703093 | MS.gene00627:CDS |
ATGAGATCACTTCAACGGAA+GGG | 0.630141 | 2.1:+75704861 | MS.gene00627:CDS |
GTAATGGAGGAAGAAGAAGA+AGG | 0.639327 | 2.1:-75702527 | None:intergenic |
AGAGTTTATTATTTCCCACA+AGG | 0.642714 | 2.1:+75702485 | MS.gene00627:CDS |
AACGAACAGGTGTTGAGACG+AGG | 0.644655 | 2.1:-75702849 | None:intergenic |
CAAGACGAGTCAACCCGTGG+TGG | 0.644679 | 2.1:+75704705 | MS.gene00627:CDS |
TTGTGAAAATTGCTTACATG+AGG | 0.646619 | 2.1:-75705052 | None:intergenic |
AAGACGAGTCAACCCGTGGT+GGG | 0.646955 | 2.1:+75704706 | MS.gene00627:CDS |
TCGGCCTCTAGGTCAAGCCG+CGG | 0.648171 | 2.1:-75702824 | None:intergenic |
GAAATAACCTCAACCCACCA+CGG | 0.649182 | 2.1:-75704719 | None:intergenic |
TGGTTGCTTCTGAACAGACA+TGG | 0.659994 | 2.1:-75702393 | None:intergenic |
TGTTTCTCTTGGGAAACCCG+CGG | 0.663878 | 2.1:-75702913 | None:intergenic |
ACAAAGACCTCATCCGTGTG+AGG | 0.664295 | 2.1:-75702626 | None:intergenic |
TTCCAAGACGAGTCAACCCG+TGG | 0.669719 | 2.1:+75704702 | MS.gene00627:CDS |
TTCAAAATAATATGGCTGTG+AGG | 0.673161 | 2.1:-75704938 | None:intergenic |
ACATTATCGGCACAAAAGCG+AGG | 0.676914 | 2.1:-75702797 | None:intergenic |
TTGTAGAAAAGAGTGTGTGT+GGG | 0.681947 | 2.1:-75702549 | None:intergenic |
TGTTAAGAGGAAGAAACTCG+TGG | 0.682365 | 2.1:+75702964 | MS.gene00627:CDS |
GTGCCGATAATGTCTTCCCG+CGG | 0.682542 | 2.1:+75702807 | MS.gene00627:CDS |
TGAAACTTCACCATGAACGT+CGG | 0.683050 | 2.1:-75702873 | None:intergenic |
AATTGTTTACTATCCTCGAG+GGG | 0.689459 | 2.1:+75703150 | MS.gene00627:CDS |
TGATGGCTATATAAGAGCTG+CGG | 0.708137 | 2.1:+75705093 | MS.gene00627:CDS |
CATCCGTGTGAGGATCGGCA+AGG | 0.710355 | 2.1:-75702616 | None:intergenic |
TCACACCAATCATCCCCTCG+AGG | 0.748749 | 2.1:-75703163 | None:intergenic |
CAAAAGAAACAACTTCATCG+CGG | 0.749390 | 2.1:-75702724 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTTCTTAAATTTATTAT+CGG | - | chr2.1:75703468-75703487 | None:intergenic | 10.0% |
!! | ACGATATTCAAATAAAAAAA+TGG | - | chr2.1:75704649-75704668 | None:intergenic | 15.0% |
!! | CGTATATTTGAATATTTAAT+TGG | + | chr2.1:75703964-75703983 | MS.gene00627:intron | 15.0% |
!! | GTAAAAAAAAATAGATGTTA+AGG | - | chr2.1:75704011-75704030 | None:intergenic | 15.0% |
!!! | AGTTCTAAATTTTTTTGTTT+GGG | - | chr2.1:75704771-75704790 | None:intergenic | 15.0% |
!!! | ATAATTTCTTTTTCTTTTCT+TGG | + | chr2.1:75703345-75703364 | MS.gene00627:intron | 15.0% |
!!! | CTTTATTTGAACAATTAATA+TGG | + | chr2.1:75704541-75704560 | MS.gene00627:intron | 15.0% |
!!! | TAGTTCTAAATTTTTTTGTT+TGG | - | chr2.1:75704772-75704791 | None:intergenic | 15.0% |
!!! | TATTTTTTTTGGTATAAATC+AGG | + | chr2.1:75703623-75703642 | MS.gene00627:intron | 15.0% |
!!! | TTTTTTTATTTGAATATCGT+AGG | + | chr2.1:75704649-75704668 | MS.gene00627:intron | 15.0% |
!!! | TTTTTTTGTGGTATTTTTTT+TGG | + | chr2.1:75703612-75703631 | MS.gene00627:intron | 15.0% |
!! | AAATCCATTAACAAAAAGTT+TGG | + | chr2.1:75705118-75705137 | MS.gene00627:CDS | 20.0% |
!! | ATAGTTAAATGACTCATTAA+AGG | + | chr2.1:75704439-75704458 | MS.gene00627:intron | 20.0% |
!! | ATATATAACATGTTTCTCTT+GGG | - | chr2.1:75702926-75702945 | None:intergenic | 20.0% |
!! | TCTAATTATAGATATAGCAT+TGG | - | chr2.1:75703697-75703716 | None:intergenic | 20.0% |
!! | TTTAACTATAGATGAAACTT+TGG | - | chr2.1:75704428-75704447 | None:intergenic | 20.0% |
!!! | GTTCTAAATTTTTTTGTTTG+GGG | - | chr2.1:75704770-75704789 | None:intergenic | 20.0% |
!!! | GTTGATAAATGATTTTTTTG+TGG | + | chr2.1:75703600-75703619 | MS.gene00627:intron | 20.0% |
!!! | TTCTAAATTTTTTTGTTTGG+GGG | - | chr2.1:75704769-75704788 | None:intergenic | 20.0% |
! | AAATGAAATGCAATATCGAT+TGG | - | chr2.1:75703908-75703927 | None:intergenic | 25.0% |
! | AACACCAAAAATTATAGTGA+TGG | + | chr2.1:75704998-75705017 | MS.gene00627:CDS | 25.0% |
! | ACATGTTATATATCTCTGAA+TGG | + | chr2.1:75702933-75702952 | MS.gene00627:CDS | 25.0% |
! | ATGAATCAATGAAGATTCAA+TGG | + | chr2.1:75703212-75703231 | MS.gene00627:CDS | 25.0% |
! | GATATATAACATGTTTCTCT+TGG | - | chr2.1:75702927-75702946 | None:intergenic | 25.0% |
! | GATGGTTCAATTATGTTATT+TGG | + | chr2.1:75705016-75705035 | MS.gene00627:CDS | 25.0% |
! | TATCTCGTACTTCTAATTTA+TGG | + | chr2.1:75703308-75703327 | MS.gene00627:CDS | 25.0% |
! | TGAGTCTTTCATGAAAATAA+CGG | - | chr2.1:75702999-75703018 | None:intergenic | 25.0% |
! | TTGAATATCGTAGGTTAATT+GGG | + | chr2.1:75704658-75704677 | MS.gene00627:intron | 25.0% |
! | TTTCACAATTCTCATATCAA+GGG | + | chr2.1:75705067-75705086 | MS.gene00627:CDS | 25.0% |
! | TTTGAATATCGTAGGTTAAT+TGG | + | chr2.1:75704657-75704676 | MS.gene00627:intron | 25.0% |
!! | GTCATATGAGATAGATTTTA+AGG | + | chr2.1:75704472-75704491 | MS.gene00627:intron | 25.0% |
!! | TACACCAAACTTTTTGTTAA+TGG | - | chr2.1:75705125-75705144 | None:intergenic | 25.0% |
!! | TATTTTCATGAAAGACTCAA+CGG | + | chr2.1:75703000-75703019 | MS.gene00627:CDS | 25.0% |
!! | TCGGTTAATTTACCAATTTT+GGG | + | chr2.1:75704311-75704330 | MS.gene00627:intron | 25.0% |
!! | TGAACCATCACTATAATTTT+TGG | - | chr2.1:75705005-75705024 | None:intergenic | 25.0% |
!! | TTCCTTTTTATCACTTAGTT+GGG | - | chr2.1:75704807-75704826 | None:intergenic | 25.0% |
!! | TTTCCTTTTTATCACTTAGT+TGG | - | chr2.1:75704808-75704827 | None:intergenic | 25.0% |
!! | TTTTCACAATTCTCATATCA+AGG | + | chr2.1:75705066-75705085 | MS.gene00627:CDS | 25.0% |
!!! | ATGAGATAGATTTTAAGGTT+AGG | + | chr2.1:75704477-75704496 | MS.gene00627:intron | 25.0% |
!!! | TGAGATAGATTTTAAGGTTA+GGG | + | chr2.1:75704478-75704497 | MS.gene00627:intron | 25.0% |
AAATTGTTTACTATCCTCGA+GGG | + | chr2.1:75703149-75703168 | MS.gene00627:CDS | 30.0% | |
ACAATTAATATGGTGCATTG+TGG | + | chr2.1:75704551-75704570 | MS.gene00627:intron | 30.0% | |
ACATTGAGACTTATCCTATA+GGG | - | chr2.1:75704258-75704277 | None:intergenic | 30.0% | |
AGAGTTTATTATTTCCCACA+AGG | + | chr2.1:75702485-75702504 | MS.gene00627:CDS | 30.0% | |
ATACTAGATACTATGAAGCA+CGG | - | chr2.1:75703571-75703590 | None:intergenic | 30.0% | |
CAGAGGAGTTCAAAATAATA+TGG | - | chr2.1:75704949-75704968 | None:intergenic | 30.0% | |
CTGTAATAATCTCTCTATGT+GGG | - | chr2.1:75704083-75704102 | None:intergenic | 30.0% | |
GGTGATACTTTATCATGTAT+AGG | - | chr2.1:75704920-75704939 | None:intergenic | 30.0% | |
GTGTTTCATAGCTAGATAAT+TGG | - | chr2.1:75703393-75703412 | None:intergenic | 30.0% | |
GTTTGACATCAATGCTTATT+GGG | + | chr2.1:75704153-75704172 | MS.gene00627:intron | 30.0% | |
TAAACTCTTGAATGCAACTT+TGG | - | chr2.1:75702473-75702492 | None:intergenic | 30.0% | |
TAAATAGCAACTCCCAAAAT+TGG | - | chr2.1:75704326-75704345 | None:intergenic | 30.0% | |
TACATTGAGACTTATCCTAT+AGG | - | chr2.1:75704259-75704278 | None:intergenic | 30.0% | |
TATTAAACGTCTCCTAATGT+CGG | - | chr2.1:75703540-75703559 | None:intergenic | 30.0% | |
TCATCTTAACTCTCATTCTA+GGG | - | chr2.1:75703240-75703259 | None:intergenic | 30.0% | |
TCTGTAATAATCTCTCTATG+TGG | - | chr2.1:75704084-75704103 | None:intergenic | 30.0% | |
TGAAGACTGATAAATCTTCA+AGG | + | chr2.1:75703257-75703276 | MS.gene00627:CDS | 30.0% | |
TTCAAAATAATATGGCTGTG+AGG | - | chr2.1:75704941-75704960 | None:intergenic | 30.0% | |
TTCATCTTAACTCTCATTCT+AGG | - | chr2.1:75703241-75703260 | None:intergenic | 30.0% | |
TTGTGAAAATTGCTTACATG+AGG | - | chr2.1:75705055-75705074 | None:intergenic | 30.0% | |
TTTGAATGAGATCACTTCAA+CGG | + | chr2.1:75704856-75704875 | MS.gene00627:CDS | 30.0% | |
! | AATGGAATTCGTTTGTTAAG+AGG | + | chr2.1:75702951-75702970 | MS.gene00627:CDS | 30.0% |
! | ATTTTCATGAAAGACTCAAC+GGG | + | chr2.1:75703001-75703020 | MS.gene00627:CDS | 30.0% |
! | GTCGGTTAATTTACCAATTT+TGG | + | chr2.1:75704310-75704329 | MS.gene00627:intron | 30.0% |
! | TCATAAAACCTCGTTTGTTT+TGG | + | chr2.1:75704112-75704131 | MS.gene00627:intron | 30.0% |
!! | AAAACAAACGAGGTTTTATG+AGG | - | chr2.1:75704113-75704132 | None:intergenic | 30.0% |
!! | AATAAGCATTGATGTCAAAC+GGG | - | chr2.1:75704153-75704172 | None:intergenic | 30.0% |
!! | CAATAAGCATTGATGTCAAA+CGG | - | chr2.1:75704154-75704173 | None:intergenic | 30.0% |
!!! | AATTTTTTTGTTTGGGGGAA+TGG | - | chr2.1:75704764-75704783 | None:intergenic | 30.0% |
!!! | ATGCAACTTTGGAATTTTGA+CGG | - | chr2.1:75702462-75702481 | None:intergenic | 30.0% |
AAATAGATGTTAAGGAGCGA+CGG | - | chr2.1:75704003-75704022 | None:intergenic | 35.0% | |
AATTGTTTACTATCCTCGAG+GGG | + | chr2.1:75703150-75703169 | MS.gene00627:CDS | 35.0% | |
ATAGAGATTGTCCCTTGATA+TGG | - | chr2.1:75703286-75703305 | None:intergenic | 35.0% | |
CAAAAGAAACAACTTCATCG+CGG | - | chr2.1:75702727-75702746 | None:intergenic | 35.0% | |
CAACGGGAAAGTTATTTGTT+GGG | + | chr2.1:75703017-75703036 | MS.gene00627:CDS | 35.0% | |
CGTTTGACATCAATGCTTAT+TGG | + | chr2.1:75704152-75704171 | MS.gene00627:intron | 35.0% | |
GAAATTGTTTACTATCCTCG+AGG | + | chr2.1:75703148-75703167 | MS.gene00627:CDS | 35.0% | |
GAGAACAAGTATGTTACTGT+CGG | + | chr2.1:75704292-75704311 | MS.gene00627:intron | 35.0% | |
GTTCTGATGTTAACAATGCT+CGG | + | chr2.1:75702762-75702781 | MS.gene00627:CDS | 35.0% | |
TAGAGATTGTCCCTTGATAT+GGG | - | chr2.1:75703285-75703304 | None:intergenic | 35.0% | |
TCAAAGAGCAGTAACTAACT+AGG | - | chr2.1:75704202-75704221 | None:intergenic | 35.0% | |
TCAACGGGAAAGTTATTTGT+TGG | + | chr2.1:75703016-75703035 | MS.gene00627:CDS | 35.0% | |
TCTTGAAAACCCTAAAGAAG+AGG | + | chr2.1:75702685-75702704 | MS.gene00627:CDS | 35.0% | |
TGCCCAACTAAGTGATAAAA+AGG | + | chr2.1:75704802-75704821 | MS.gene00627:CDS | 35.0% | |
TTCAGTAGAATCGTATGTGT+CGG | + | chr2.1:75703494-75703513 | MS.gene00627:intron | 35.0% | |
! | TCAAACGGGTATTTTCATTG+TGG | - | chr2.1:75704139-75704158 | None:intergenic | 35.0% |
! | TGATTGGTGTGATTTTGTAG+TGG | + | chr2.1:75703174-75703193 | MS.gene00627:CDS | 35.0% |
! | TGCAATATCGATTGGTGTAA+TGG | - | chr2.1:75703900-75703919 | None:intergenic | 35.0% |
! | TTGGGATGAATTTCAAGTCT+CGG | + | chr2.1:75704676-75704695 | MS.gene00627:CDS | 35.0% |
! | TTGTAGAAAAGAGTGTGTGT+GGG | - | chr2.1:75702552-75702571 | None:intergenic | 35.0% |
! | TTTGTAGAAAAGAGTGTGTG+TGG | - | chr2.1:75702553-75702572 | None:intergenic | 35.0% |
!!! | CTTCTTTAGGGTTTTCAAGA+TGG | - | chr2.1:75702685-75702704 | None:intergenic | 35.0% |
AACACACTCACAAACACACA+CGG | + | chr2.1:75703408-75703427 | MS.gene00627:intron | 40.0% | |
AATGAGATCACTTCAACGGA+AGG | + | chr2.1:75704860-75704879 | MS.gene00627:CDS | 40.0% | |
ACATCCTCACTCTTGCAAAA+AGG | - | chr2.1:75703840-75703859 | None:intergenic | 40.0% | |
AGATTGGCAACCTCTTCTTT+AGG | - | chr2.1:75702698-75702717 | None:intergenic | 40.0% | |
ATATGGTGCATTGTGGCTAA+TGG | + | chr2.1:75704558-75704577 | MS.gene00627:intron | 40.0% | |
ATGAGATCACTTCAACGGAA+GGG | + | chr2.1:75704861-75704880 | MS.gene00627:CDS | 40.0% | |
ATTGTGGACCAAAACAAACG+AGG | - | chr2.1:75704123-75704142 | None:intergenic | 40.0% | |
CTAACTAGGATCGTCTCTAA+TGG | - | chr2.1:75704188-75704207 | None:intergenic | 40.0% | |
CTTCAAGGATCCCATATCAA+GGG | + | chr2.1:75703272-75703291 | MS.gene00627:CDS | 40.0% | |
GATTGGCAACCTCTTCTTTA+GGG | - | chr2.1:75702697-75702716 | None:intergenic | 40.0% | |
TAATTTATGGCGCATGCTTC+AGG | + | chr2.1:75703321-75703340 | MS.gene00627:CDS | 40.0% | |
TATATTGCTTCGTGCCCTAT+AGG | + | chr2.1:75704241-75704260 | MS.gene00627:intron | 40.0% | |
TCTCATATCAAGGGAGATGA+TGG | + | chr2.1:75705076-75705095 | MS.gene00627:CDS | 40.0% | |
TCTTCAAGGATCCCATATCA+AGG | + | chr2.1:75703271-75703290 | MS.gene00627:CDS | 40.0% | |
TGAAACTTCACCATGAACGT+CGG | - | chr2.1:75702876-75702895 | None:intergenic | 40.0% | |
TGATGGCTATATAAGAGCTG+CGG | + | chr2.1:75705093-75705112 | MS.gene00627:CDS | 40.0% | |
TGTTAAGAGGAAGAAACTCG+TGG | + | chr2.1:75702964-75702983 | MS.gene00627:CDS | 40.0% | |
! | AAAAGAGTGTGTGTGGGTAA+TGG | - | chr2.1:75702546-75702565 | None:intergenic | 40.0% |
! | AGATGGACATCGTTGGTTAT+TGG | - | chr2.1:75702668-75702687 | None:intergenic | 40.0% |
! | AGTTATTTGTTGGGATTCGC+AGG | + | chr2.1:75703026-75703045 | MS.gene00627:CDS | 40.0% |
! | GCATTGTGGCTAATGGTTTT+GGG | + | chr2.1:75704565-75704584 | MS.gene00627:intron | 40.0% |
! | GTAATGGAGGAAGAAGAAGA+AGG | - | chr2.1:75702530-75702549 | None:intergenic | 40.0% |
! | TGCATTGTGGCTAATGGTTT+TGG | + | chr2.1:75704564-75704583 | MS.gene00627:intron | 40.0% |
! | TTTTTGCAAGAGTGAGGATG+TGG | + | chr2.1:75703839-75703858 | MS.gene00627:intron | 40.0% |
!! | AGTAATGGAGGCATTGAAGT+TGG | + | chr2.1:75703105-75703124 | MS.gene00627:CDS | 40.0% |
!! | CAAACGAGGTTTTATGAGGA+AGG | - | chr2.1:75704109-75704128 | None:intergenic | 40.0% |
!! | GTTTTCAAGATGGACATCGT+TGG | - | chr2.1:75702675-75702694 | None:intergenic | 40.0% |
!! | TGGTGTGATTTTGTAGTGGA+TGG | + | chr2.1:75703178-75703197 | MS.gene00627:CDS | 40.0% |
!!! | AAGAAGGAGAAGCGTTTTCT+AGG | - | chr2.1:75702514-75702533 | None:intergenic | 40.0% |
AAATAACCTCAACCCACCAC+GGG | - | chr2.1:75704721-75704740 | None:intergenic | 45.0% | |
ACATTATCGGCACAAAAGCG+AGG | - | chr2.1:75702800-75702819 | None:intergenic | 45.0% | |
CCTCACTCTTGCAAAAAGGT+AGG | - | chr2.1:75703836-75703855 | None:intergenic | 45.0% | |
CGAAGGAAACTTTGTCTCAG+AGG | - | chr2.1:75704966-75704985 | None:intergenic | 45.0% | |
GAAATAACCTCAACCCACCA+CGG | - | chr2.1:75704722-75704741 | None:intergenic | 45.0% | |
GAGACGATACAAGGAGTGAA+AGG | - | chr2.1:75702584-75702603 | None:intergenic | 45.0% | |
GCACATGTGTGCCAAATTTC+TGG | - | chr2.1:75702431-75702450 | None:intergenic | 45.0% | |
GTGTTGCAATTGTGAGTCGA+AGG | - | chr2.1:75704983-75705002 | None:intergenic | 45.0% | |
TCAACAGCTGAGACGATACA+AGG | - | chr2.1:75702593-75702612 | None:intergenic | 45.0% | |
TCCTAATGTCGGACACACAT+CGG | - | chr2.1:75703529-75703548 | None:intergenic | 45.0% | |
TTCATCGCGGTTGTTGAGAT+TGG | - | chr2.1:75702714-75702733 | None:intergenic | 45.0% | |
! | AAGTTTTACCATGTCTGCCG+CGG | + | chr2.1:75702896-75702915 | MS.gene00627:CDS | 45.0% |
! | CCTACCTTTTTGCAAGAGTG+AGG | + | chr2.1:75703833-75703852 | MS.gene00627:intron | 45.0% |
! | CGTTTTCTAGGTGACCTTGT+GGG | - | chr2.1:75702502-75702521 | None:intergenic | 45.0% |
! | GAAGAAGGATGAGTTGGAGA+AGG | + | chr2.1:75703081-75703100 | MS.gene00627:CDS | 45.0% |
! | TGAGTTGGAGAAGGCAGTAA+TGG | + | chr2.1:75703090-75703109 | MS.gene00627:CDS | 45.0% |
!! | AATGGAGGCATTGAAGTTGG+CGG | + | chr2.1:75703108-75703127 | MS.gene00627:CDS | 45.0% |
!!! | CTTTGGAATTTTGACGGCAG+CGG | - | chr2.1:75702456-75702475 | None:intergenic | 45.0% |
!!! | ATATTTTAATATATCAATAA+TGG | + | chr2.1:75704053-75704072 | MS.gene00627:intron | 5.0% |
!!! | TATTTTAATATATCAATAAT+GGG | + | chr2.1:75704054-75704073 | MS.gene00627:intron | 5.0% |
AAGAGGAAGAAACTCGTGGC+TGG | + | chr2.1:75702968-75702987 | MS.gene00627:CDS | 50.0% | |
AAGCCGCGGGAAGACATTAT+CGG | - | chr2.1:75702813-75702832 | None:intergenic | 50.0% | |
ACAAAGACCTCATCCGTGTG+AGG | - | chr2.1:75702629-75702648 | None:intergenic | 50.0% | |
ACCGATGTGTGTCCGACATT+AGG | + | chr2.1:75703525-75703544 | MS.gene00627:intron | 50.0% | |
ACTATCCTCGAGGGGATGAT+TGG | + | chr2.1:75703158-75703177 | MS.gene00627:CDS | 50.0% | |
CATGAACGTCGGTAACGAAC+AGG | - | chr2.1:75702865-75702884 | None:intergenic | 50.0% | |
CGCATGTGCGTCCAGAAATT+TGG | + | chr2.1:75702417-75702436 | MS.gene00627:CDS | 50.0% | |
CTGTTCGTTACCGACGTTCA+TGG | + | chr2.1:75702863-75702882 | MS.gene00627:CDS | 50.0% | |
GAAGTTGGCGGAAGAGAACA+AGG | + | chr2.1:75703120-75703139 | MS.gene00627:CDS | 50.0% | |
GGAGCAGAAGAAGGATGAGT+TGG | + | chr2.1:75703075-75703094 | MS.gene00627:CDS | 50.0% | |
GTTGGAGAAGGCAGTAATGG+AGG | + | chr2.1:75703093-75703112 | MS.gene00627:CDS | 50.0% | |
TGTTTCTCTTGGGAAACCCG+CGG | - | chr2.1:75702916-75702935 | None:intergenic | 50.0% | |
TTTGTTTGGGGGAATGGCGT+CGG | - | chr2.1:75704758-75704777 | None:intergenic | 50.0% | |
! | AGAGTGTGTGTGGGTAATGG+AGG | - | chr2.1:75702543-75702562 | None:intergenic | 50.0% |
! | AGTTTTACCATGTCTGCCGC+GGG | + | chr2.1:75702897-75702916 | MS.gene00627:CDS | 50.0% |
! | ATTTCTGGACGCACATGCGA+TGG | - | chr2.1:75702416-75702435 | None:intergenic | 50.0% |
! | GCGTTTTCTAGGTGACCTTG+TGG | - | chr2.1:75702503-75702522 | None:intergenic | 50.0% |
!! | AACGAACAGGTGTTGAGACG+AGG | - | chr2.1:75702852-75702871 | None:intergenic | 50.0% |
!! | CAGGTGTTGAGACGAGGATT+CGG | - | chr2.1:75702846-75702865 | None:intergenic | 50.0% |
!! | GAACACGCAGTTTGTTGCAG+CGG | + | chr2.1:75703048-75703067 | MS.gene00627:CDS | 50.0% |
AAGACGAGTCAACCCGTGGT+GGG | + | chr2.1:75704706-75704725 | MS.gene00627:CDS | 55.0% | |
CGGCACAAAAGCGAGGTATG+TGG | - | chr2.1:75702793-75702812 | None:intergenic | 55.0% | |
GACCTCATCCGTGTGAGGAT+CGG | - | chr2.1:75702624-75702643 | None:intergenic | 55.0% | |
TCACACCAATCATCCCCTCG+AGG | - | chr2.1:75703166-75703185 | None:intergenic | 55.0% | |
TCTCCTTGCCGATCCTCACA+CGG | + | chr2.1:75702613-75702632 | MS.gene00627:CDS | 55.0% | |
TTCCAAGACGAGTCAACCCG+TGG | + | chr2.1:75704702-75704721 | MS.gene00627:CDS | 55.0% | |
! | GTGCCGATAATGTCTTCCCG+CGG | + | chr2.1:75702807-75702826 | MS.gene00627:CDS | 55.0% |
CAAGACGAGTCAACCCGTGG+TGG | + | chr2.1:75704705-75704724 | MS.gene00627:CDS | 60.0% | |
CATCCGTGTGAGGATCGGCA+AGG | - | chr2.1:75702619-75702638 | None:intergenic | 60.0% | |
GAGACGAGGATTCGGCCTCT+AGG | - | chr2.1:75702838-75702857 | None:intergenic | 60.0% | |
TGCCGATCCTCACACGGATG+AGG | + | chr2.1:75702619-75702638 | MS.gene00627:CDS | 60.0% | |
!! | AGTCAACCCGTGGTGGGTTG+AGG | + | chr2.1:75704712-75704731 | MS.gene00627:CDS | 60.0% |
!! | CACCACGGGTTGACTCGTCT+TGG | - | chr2.1:75704707-75704726 | None:intergenic | 60.0% |
!! | CACGCAGTTTGTTGCAGCGG+CGG | + | chr2.1:75703051-75703070 | MS.gene00627:CDS | 60.0% |
CTTCCCGCGGCTTGACCTAG+AGG | + | chr2.1:75702820-75702839 | MS.gene00627:CDS | 65.0% | |
TCGGCCTCTAGGTCAAGCCG+CGG | - | chr2.1:75702827-75702846 | None:intergenic | 65.0% | |
TGGGAAACCCGCGGCAGACA+TGG | - | chr2.1:75702907-75702926 | None:intergenic | 65.0% | |
!! | GCAGTTTGTTGCAGCGGCGG+CGG | + | chr2.1:75703054-75703073 | MS.gene00627:CDS | 65.0% |
AGCGGCGGCGGAGCAGAAGA+AGG | + | chr2.1:75703066-75703085 | MS.gene00627:CDS | 70.0% | |
CGGCCTCTAGGTCAAGCCGC+GGG | - | chr2.1:75702826-75702845 | None:intergenic | 70.0% | |
! | TGGGGGAATGGCGTCGGAGC+AGG | - | chr2.1:75704752-75704771 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 75702395 | 75705153 | 75702395 | ID=MS.gene00627 |
chr2.1 | mRNA | 75702395 | 75705153 | 75702395 | ID=MS.gene00627.t1;Parent=MS.gene00627 |
chr2.1 | exon | 75702395 | 75703342 | 75702395 | ID=MS.gene00627.t1.exon1;Parent=MS.gene00627.t1 |
chr2.1 | CDS | 75702395 | 75703342 | 75702395 | ID=cds.MS.gene00627.t1;Parent=MS.gene00627.t1 |
chr2.1 | exon | 75704671 | 75705153 | 75704671 | ID=MS.gene00627.t1.exon2;Parent=MS.gene00627.t1 |
chr2.1 | CDS | 75704671 | 75705153 | 75704671 | ID=cds.MS.gene00627.t1;Parent=MS.gene00627.t1 |
Gene Sequence |
Protein sequence |