AlfalfaGEDB | MS.gene006307

M. sativa cultivar XinJiangDaYe / MS.gene006307

KEGG: K09422
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006307.t1	XP_013469682.1	96.7	272	7	1	1	270	1	272	2.10E-150	541.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006307.t1	Q9M0K4	51.7	209	80	3	6	193	1	209	4.3e-51	203.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006307.t1	A0A072W078	96.7	272	7	1	1	270	1	272	1.5e-150	541.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene006307.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006307.t1	MTR_1g100667	96.691	272	7	1	1	270	1	272	0.0	551
MS.gene006307.t1	MTR_6g055910	60.204	294	82	5	1	270	1	283	1.02e-116	336
MS.gene006307.t1	MTR_6g055910	56.574	251	75	4	43	270	15	254	1.19e-88	264
MS.gene006307.t1	MTR_6g055910	52.915	223	71	4	71	270	2	213	2.04e-68	211
MS.gene006307.t1	MTR_1g085040	70.248	121	35	1	10	129	9	129	8.78e-55	181
MS.gene006307.t1	MTR_1g112760	68.908	119	36	1	10	127	10	128	5.44e-53	172
MS.gene006307.t1	MTR_7g110830	56.863	153	65	1	10	161	9	161	7.30e-53	176
MS.gene006307.t1	MTR_3g077110	68.595	121	37	1	10	129	9	129	7.81e-53	175
MS.gene006307.t1	MTR_4g105130	60.284	141	52	2	10	146	9	149	1.44e-52	175
MS.gene006307.t1	MTR_1g085640	68.908	119	36	1	10	127	9	127	4.15e-52	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006307.t1	AT4G25560	51.675	209	80	3	6	193	1	209	1.72e-61	196
MS.gene006307.t1	AT5G52260	56.915	188	65	4	7	178	6	193	5.24e-61	194
MS.gene006307.t1	AT3G48920	53.368	193	81	4	8	196	13	200	7.23e-61	193
MS.gene006307.t1	AT5G26660	69.748	119	35	1	10	127	9	127	1.79e-53	177
MS.gene006307.t1	AT1G57560	49.738	191	79	4	10	195	9	187	2.73e-53	176
MS.gene006307.t1	AT1G57560	58.389	149	57	2	10	157	9	153	6.88e-53	173
MS.gene006307.t1	AT4G01680	63.566	129	46	1	10	137	9	137	7.31e-53	172
MS.gene006307.t1	AT4G01680	63.566	129	46	1	10	137	9	137	4.56e-52	173
MS.gene006307.t1	AT1G09540	63.566	129	46	1	10	137	9	137	2.91e-51	172
MS.gene006307.t1	AT1G63910	66.667	108	36	0	12	119	11	118	1.21e-50	170

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Find 52 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGTGGCCAAAGCTA+TGG	0.515504	1.1:-72583385	MS.gene006307:CDS
AAAGTTCAGCAAACAGGAGG+AGG	0.533564	1.1:-72584498	MS.gene006307:CDS
AAATTTGCAAATCAAATTGT+GGG	0.441722	1.1:-72583015	MS.gene006307:CDS
AACAACCATGACCATGTTTA+AGG	0.206159	1.1:+72584988	None:intergenic
AACTTTCCTCTCTTTAATCC+TGG	0.382456	1.1:+72584515	None:intergenic
AATCAACTCCAGGCATGCAA+TGG	0.573572	1.1:+72582980	None:intergenic
AATGATGCAATGTACGTTTG+AGG	0.502056	1.1:-72582934	None:intergenic
ACAAAACCAAAACATAGAAA+AGG	0.509605	1.1:-72585053	MS.gene006307:CDS
AGAAACCAACCTGCCTTAAT+TGG	0.183204	1.1:+72584954	None:intergenic
AGAAACTACATCCTTAAACA+TGG	0.675410	1.1:-72584999	MS.gene006307:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACTACATCCTTAAACA+TGG	-	chr1.1:72583014-72583033	MS.gene006307:CDS	30.0%
ATACATGTATAGACTTGCAA+AGG	-	chr1.1:72583433-72583452	MS.gene006307:CDS	30.0%
ATAGTTTGGAAAATTCTACC+TGG	+	chr1.1:72584443-72584462	None:intergenic	30.0%
ATGTTTACTATGATTGGTGT+CGG	-	chr1.1:72584226-72584245	MS.gene006307:intron	30.0%
CAAATCAAATTGTGGGAAAT+GGG	-	chr1.1:72585005-72585024	MS.gene006307:CDS	30.0%
CACCTGACCAATATAATTTA+AGG	+	chr1.1:72584536-72584555	None:intergenic	30.0%
CATTGGATCATGTTAATAGT+AGG	-	chr1.1:72584819-72584838	MS.gene006307:intron	30.0%
CTTAAATTATATTGGTCAGG+TGG	-	chr1.1:72584534-72584553	MS.gene006307:CDS	30.0%
CTTAGCACTCTTCATTTAAA+GGG	+	chr1.1:72584505-72584524	None:intergenic	30.0%
GTGATGTTGTTATAATTGTG+TGG	+	chr1.1:72584746-72584765	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	72582936	72585099	72582936	ID=MS.gene006307
chr1.1	mRNA	72582936	72585099	72582936	ID=MS.gene006307.t1;Parent=MS.gene006307
chr1.1	exon	72584964	72585099	72584964	ID=MS.gene006307.t1.exon1;Parent=MS.gene006307.t1
chr1.1	CDS	72584964	72585099	72584964	ID=cds.MS.gene006307.t1;Parent=MS.gene006307.t1
chr1.1	exon	72584461	72584590	72584461	ID=MS.gene006307.t1.exon2;Parent=MS.gene006307.t1
chr1.1	CDS	72584461	72584590	72584461	ID=cds.MS.gene006307.t1;Parent=MS.gene006307.t1
chr1.1	exon	72582936	72583482	72582936	ID=MS.gene006307.t1.exon3;Parent=MS.gene006307.t1
chr1.1	CDS	72582936	72583482	72582936	ID=cds.MS.gene006307.t1;Parent=MS.gene006307.t1

Gene Sequence

>MS.gene006307

ATGGGGTTCCAGCCACTAGAAAAGACAAAACCAAAACATAGAAAAGGTTTATGGTCACCTGAAGAAGATCACAAACTCAGAAACTACATCCTTAAACATGGTCATGGTTGTTGGAGCTCTGTCCCAATTAAGGCAGGTTGGTTTCTTTCTTCTTCAAAGGTGTATTATTCCCTAATCATATTTATAAGTAGGTCATTGTAATTTAAAGTTTTTGCCCGTGAGGTGTCAGCTTTGTAGTAAGAGTTTGAATCCTAAAATGGTCATCAATGTCAAGTTAATTTTTTTTTTTTTTTTTGAAAGAGTCACGTTAATTAATACTAGTAATGATTTCTCTCTTTCTTATATTTACTTTCAAAAAGTTCTTGTGCTACTGAAGTTTTTAATTAAGTCCTTAGCTATTAAGAACTGTTGATTTTTGCTAAAATGTATGGATTGATTTGAAGAATCATAGTGTATAAGATCATATTCAATTGTTCTATCTAATGGAGTACAATGTCATACATGTATAGACTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGCAAACAGGAGGAGGAAACAATCCTCACCCTTCATCACATGTTAGGCAACAAGTATGTTAGTAGAGTAAATCTACTTTTACTTTTTGTCATTTTTTTTTCTAAGTTCAATTTTATCCAAAAGTTCAAAGTAGTGAATTTTATGTGAAAGTCTTAAGTTAGAGAATATAATTGGATTGGAGGGTAGTTTCATATATAATTTTATTTATTTTATAGAAGCAACTAGGCTCTATTTTATGGAGAAAAAAAAAAAAAAGCATGGCTTGATTGGTAAGTCAAACCAGGAATTGGCTTGGTTAGCATGCTCTTCTTTTTAATAATGGATGAACATTGAACAAAATATATTGATTATCCTATTCCTCAATTCTGTATATTCAAACTAAGCCTATTTCAAGGTTATGTGTTCCTTCTATAGAGTTTTCCTTCACAAACTTCAATCAGTAGTATTATCAAACTTTTTTTAATTCAAATACAGTACAACTATTTCACACCAAAAAAAATTGCTACACACACATGCACAATGCATACTCGATGAGATTAATTCATTTATTTCCAATTACCAAGGAGAGATGAAATAAACCTGTGTGGTGAGATTTGGGGTGGACCATTTGATAGATAATTTAATATGAACCACTATTTAGAATTATCTAAAATTTAATGATGATGAACGGCGTTCTTTAGAAGTAGAAGTTTACGGTACTCCTCATGTTTACTATGATTGGTGTCGGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTGAAGAATGCATATTTGTTTTCCTTTGTTTTTATGGAACTAACACCTATCACGTCACAGTCTCAACCGCAAGAACAAAGAGAATCGTAAACTTCTACTTTCAAAAGACGATGTCTATGATCATTGAAGTTTCTAATAATTTTCAATTACTGGTCCAGGTAGAATTTTCCAAACTATGCAATATACAAATTTTCATGTACTCTTTTAATCTTTTTTCCCTTTAAATGAAGAGTGCTAAGAGAAATGGCCTTAAATTATATTGGTCAGGTGGTCACAGATAGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTATGGAAATGGAATCACACAAACAATTTCAATATGCTAGCTCAAGCTCAGATACAATGAACTCTTCACCCTCTCTTCAAAAACTTGCAACACAAGATCCACACAATTATAACAACATCACCAAAGAGACACATCAAAGCACCTTACCAAAACTATTGTTTGCTGAATGGCTTTCATTGGATCATGTTAATAGTAGGAACTCTACAAATTCAGTTGAATCTTTGGTCATGAGAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAGCTACAATGCAAGAGGGACCATTCAATGGAGAGTTTCATAATAGTGTGACCAACATTTCAGCCACTGAGATGTTCAATTCACAGCTTAAATTTGCAAATCAAATTGTGGGAAATGGGTTTGTCCATTGCATGCCTGGAGTTGATTTAAGTAACAATTTCAATCTAAGCAATGATGCAATGTACGTTTGA

Protein sequence

>MS.gene006307.t1

MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKADLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAMEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYNNITKETHQSTLPKLLFAEWLSLDHVNSRNSTNSVESLVMRNGFDQNSAFQEATMQEGPFNGEFHNSVTNISATEMFNSQLKFANQIVGNGFVHCMPGVDLSNNFNLSNDAMYV