AlfalfaGEDB | MS.gene00631

M. sativa cultivar XinJiangDaYe / MS.gene00631

KEGG: K14498
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00631.t1	XP_003592980.1	99.4	351	2	0	1	351	1	351	4.80E-187	663.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00631.t1	P43291	87.3	314	40	0	1	314	1	314	3.7e-164	578.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00631.t1	Q5U9E3	99.4	351	2	0	1	351	1	351	3.4e-187	663.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00631.t1	MTR_2g006330	99.430	351	2	0	1	351	1	351	0.0	729
MS.gene00631.t1	MTR_3g097320	82.535	355	58	1	1	351	1	355	0.0	604
MS.gene00631.t1	MTR_8g095330	82.768	354	58	1	1	351	2	355	0.0	600
MS.gene00631.t1	MTR_2g006330	99.636	275	1	0	77	351	1	275	0.0	576
MS.gene00631.t1	MTR_4g086855	73.148	324	86	1	2	325	21	343	0.0	511
MS.gene00631.t1	MTR_4g099240	72.424	330	81	3	2	324	3	329	0.0	508
MS.gene00631.t1	MTR_8g089975	74.603	315	74	2	1	311	1	313	3.66e-179	500
MS.gene00631.t1	MTR_1g034030	75.410	305	74	1	2	306	22	325	3.18e-178	498
MS.gene00631.t1	MTR_5g064540	69.760	334	96	3	1	334	1	329	3.24e-175	490
MS.gene00631.t1	MTR_8g079560	69.578	332	100	1	2	333	21	351	1.01e-174	489

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00631.t1	AT1G60940	86.834	319	42	0	1	319	1	319	0.0	597
MS.gene00631.t1	AT1G60940	86.834	319	42	0	1	319	1	319	0.0	597
MS.gene00631.t1	AT1G10940	80.441	363	59	1	1	351	1	363	0.0	583
MS.gene00631.t1	AT1G10940	78.706	371	59	2	1	351	1	371	0.0	575
MS.gene00631.t1	AT5G63650	84.615	312	48	0	1	312	1	312	0.0	567
MS.gene00631.t1	AT5G08590	79.714	350	67	2	1	347	1	349	0.0	562
MS.gene00631.t1	AT2G23030	74.691	324	80	1	1	322	1	324	0.0	507
MS.gene00631.t1	AT4G33950	73.148	324	82	2	2	323	19	339	0.0	506
MS.gene00631.t1	AT4G33950	74.367	316	76	2	2	315	19	331	3.29e-180	503
MS.gene00631.t1	AT5G66880	73.633	311	81	1	2	312	20	329	2.54e-174	488

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Find 87 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCACCTCAGGCATCT+AGG	0.510827	2.1:-75676476	MS.gene00631:CDS
AAACGAAGCAGAGGCCGAGC+TGG	0.470047	2.1:-75676406	MS.gene00631:CDS
AAAGAGAGTCAAGGAGGCCC+AGG	0.497894	2.1:-75676367	MS.gene00631:CDS
AAAGGTGATGGAGAAGTACG+AGG	0.723119	2.1:-75678982	None:intergenic
AAGAACCTCTGGTGCTATGT+AGG	0.546206	2.1:+75677863	None:intergenic
ACCTCGTTCTATATATTTCA+TGG	0.324369	2.1:+75678884	None:intergenic
ACCTCTGGTGCTATGTAGGC+TGG	0.412790	2.1:+75677867	None:intergenic
ACGTAGAGAATATGACGGGA+AGG	0.643039	2.1:-75677838	MS.gene00631:intron
ACTCTTTATGTAATGCTGGT+GGG	0.611403	2.1:-75677143	MS.gene00631:CDS
ACTGACCTAGATGCCTGAGG+TGG	0.591739	2.1:+75676471	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGATCCCAAAAATTTC+AGG	-	chr2.1:75678216-75678235	MS.gene00631:intron	30.0%
ACCTCGTTCTATATATTTCA+TGG	+	chr2.1:75676435-75676454	None:intergenic	30.0%
AGAATGAGCGTTATATTTGA+CGG	-	chr2.1:75677668-75677687	MS.gene00631:intron	30.0%
AGACATTATGAAGATTGTTG+AGG	-	chr2.1:75678811-75678830	MS.gene00631:intron	30.0%
AGAGAATGAAGAAGTTAGAA+AGG	+	chr2.1:75676951-75676970	None:intergenic	30.0%
ATAACTATACCAAGATGTGT+AGG	+	chr2.1:75676829-75676848	None:intergenic	30.0%
ATGAAGAAGTTAGAAAGGAA+TGG	+	chr2.1:75676946-75676965	None:intergenic	30.0%
CTGTCTGTTAAGTTTCATTA+AGG	-	chr2.1:75678605-75678624	MS.gene00631:intron	30.0%
TAAAAAACACGGAAAACTCA+AGG	+	chr2.1:75677935-75677954	None:intergenic	30.0%
TAATATTATTCGCTTCAAGG+AGG	-	chr2.1:75676628-75676647	MS.gene00631:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	75676341	75678997	75676341	ID=MS.gene00631
chr2.1	mRNA	75676341	75678997	75676341	ID=MS.gene00631.t1;Parent=MS.gene00631
chr2.1	exon	75678878	75678997	75678878	ID=MS.gene00631.t1.exon1;Parent=MS.gene00631.t1
chr2.1	CDS	75678878	75678997	75678878	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75678689	75678763	75678689	ID=MS.gene00631.t1.exon2;Parent=MS.gene00631.t1
chr2.1	CDS	75678689	75678763	75678689	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75678423	75678524	75678423	ID=MS.gene00631.t1.exon3;Parent=MS.gene00631.t1
chr2.1	CDS	75678423	75678524	75678423	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75678221	75678274	75678221	ID=MS.gene00631.t1.exon4;Parent=MS.gene00631.t1
chr2.1	CDS	75678221	75678274	75678221	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75678030	75678122	75678030	ID=MS.gene00631.t1.exon5;Parent=MS.gene00631.t1
chr2.1	CDS	75678030	75678122	75678030	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75677839	75677931	75677839	ID=MS.gene00631.t1.exon6;Parent=MS.gene00631.t1
chr2.1	CDS	75677839	75677931	75677839	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75677088	75677192	75677088	ID=MS.gene00631.t1.exon7;Parent=MS.gene00631.t1
chr2.1	CDS	75677088	75677192	75677088	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75676913	75677011	75676913	ID=MS.gene00631.t1.exon8;Parent=MS.gene00631.t1
chr2.1	CDS	75676913	75677011	75676913	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1
chr2.1	exon	75676341	75676655	75676341	ID=MS.gene00631.t1.exon9;Parent=MS.gene00631.t1
chr2.1	CDS	75676341	75676655	75676341	ID=cds.MS.gene00631.t1;Parent=MS.gene00631.t1

Gene Sequence

>MS.gene00631

ATGGAGAAGTACGAGGTGGTTAAGGATATAGGATCTGGAAATTTTGGCGTTGCTAGACTTATGCGCCAGAAAGATACCAAACAGCTTGTTGCCATGAAATATATAGAACGAGGTCACAAGGTACTACACTCTTTTCACTTTCAATTTTTATATTTTAATTAATTAATCTAAATATTATTATTATTATACTATTAAGTTATACAATAATAATATGCATCATGTGTCTGTCTCCAGATTGATGAGAATGTTGCAAGGGAAATAATAAACCATAGAAGTCTTCGTCATCCTAATATTATTCGCTTCAAGGAGGTCTGGTCTCTTTATTATTATTATTATTATTATTATTATTATTATTATTACATTCAGCGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTTTGAATTTGCGGTGGGATTGTCAGAATCACGCGATTTCAGTTTTGCAGGTGGTTTTGACTCCTACACATCTTGGTATAGTTATGGAATATGCTGCTGGTGGAGAGCTCTTTGACCGAATTTGCTCTGCTGGAAGATTCAGTGAAGACGAGGTTCATTTCCTCTCATTTTACATATTACCATTCCTTTCTAACTTCTTCATTCTCTAGTATTTTCTTCGAGGCATATAGCTGCATAACCTTTTAATTTATGCGTTCTTATTAACTACCAAGTTCTGAAAGATTCGTTGATTTGTTGCAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGGTAATCTATAAAAAAAAATATTATCTCAAAATGCTCATGATTTCTTATTTTGCCTCTATCTTGGGGTTATATTTCTAAGTATTTTCCTTCTTTTGCAGCAAATCTGCCATCGAGACTTGAAGCTCGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGCGATTTTGGTTATTCTAAGGTTTAGTTATGGACTCATTTCAAATGCCAAATGCTTTATGTAAATTATTGAAGTCATACTTGACAAGTTTTATTTCTGACAACATCTTGTTTTTCTAGTCTTCTCTGCTTCACTCTAGGCCTAAGTCTACAGTGGGAACCCCAGCCTACATAGCACCAGAGGTTCTTTCACGTAGAGAATATGACGGGAAGGTAAATAATTCAGTTTCTTTCATGGAATAAGATTAAACATGTGTTGGGATGGTTCAACACAGATACTTTTGTTTGTCAGAGGAAACTCAGAAATGGATGTTAGCAATTTTTATGGGTATGAGACCATGAAACAGCATGATTGTGCTTAAAAGTTCTGCTAGTATTTAAAGAATGAGCGTTATATTTGACGGCTTGATGTGTCCACATTTAACTGAAATAAGAATATGGACAAAATAGCCATTACGAATTGTGTAGTCTGGAATGTAAATTGTGACAGTTCATGTAGCTTGTGTTGAATCATTGTAATTTTCAAAAGCTCTAAACACTTGAGCCACATAAAGGAATTGATATAAATTTTTCTTTATCTCCAATATTTTTATAAATGTCAGAGGAAACATTTGAAGTATTTCGTCCTTGGAAGGACTAGTCTTACCTTGAGTTTTCCGTGTTTTTTATGTTAATGATCATTTTCTTAGTTGTTCTATTTTGTTTCTGCGGTGTTGATGTTCTCATCTTAGTTCTTCTATTCCGTTTGTTTCTGTAAAGTTAGTGATGTTCTCATCTTCTTAGTTCTATTCTGTTTCTGTGGTGTTAATAATGTTCTGATTTTTCTTAGTTCTCTTATTCTGTTTTTGTGTCCTTTCAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGATGATCCCAAAAATTTCAGGAAAACCATCAATGTAATTTTCTTGACATCATCTTAATTCACAGGTTTGTAAAACATAAATAATTTCTGACCCTTGTATTCTTATACAGAGAATTATGGCTGTTCAATACAAGATTCCAGATTACGTTCACATATCTCAAGAATGTAAACATCTGCTGTCTCGCATTTTTGTGGCAAGTCCAGCTAGGGTATGCACAGTCTATGTTGTTAACAGCACTTCAGAGTTATTGTTTTATCTAATAATTTATTCAAAAGGAAACTAGTAAAGAAATTTGAGGCGCACACATGTTAGGTGCATGATGTCACTTGAACTAGGCTCACAAGTGTATATAGATAGTTATAGTTATATAACTATGTAGTTATTTTTCTGTCTGTTAAGTTTCATTAAGGGACAAGTTCATCTGTGGTCTACTAAAATGCCATTGTATGTTTTGATTTACTGCAGAGAATCACCATTAAGGAAATCAAGTCCCATCCATGGTTTTTAAAGAACTTGCCTAGAGAATTAACTGAAATGGCTCAAGCTGTTTACTACAGAAAGGAAAATCCAACTTATTCTCTACAGAGCATTGAAGACATTATGAAGATTGTTGAGGAAGCTAAAAACCCACCTCAGGCATCTAGGTCAGTTGGAGGATTTGGCTGGGGAGGAGAAGAAGATGACGACGAAATAAACGAAGCAGAGGCCGAGCTGGAAGAAGATGAGTATGAAAAGAGAGTCAAGGAGGCCCAGGAAAGCGGAGAAATCCATGTCAACTAA

Protein sequence

>MS.gene00631.t1

MEKYEVVKDIGSGNFGVARLMRQKDTKQLVAMKYIERGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFDRICSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINRIMAVQYKIPDYVHISQECKHLLSRIFVASPARRITIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTYSLQSIEDIMKIVEEAKNPPQASRSVGGFGWGGEEDDDEINEAEAELEEDEYEKRVKEAQESGEIHVN