AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006320.t1 MTR_1g100777 92.105 304 22 2 1 303 1 303 0.0 541
MS.gene006320.t1 MTR_0020s0020 54.783 345 106 11 1 301 1 339 2.73e-103 305
MS.gene006320.t1 MTR_5g010680 48.495 299 102 8 5 252 6 303 3.08e-76 237
MS.gene006320.t1 MTR_5g089170 42.105 247 118 5 10 249 17 245 5.26e-57 184
MS.gene006320.t1 MTR_3g101870 44.907 216 89 4 10 196 16 230 2.05e-56 186
MS.gene006320.t1 MTR_5g017470 48.634 183 70 3 11 178 2 175 1.26e-51 171
MS.gene006320.t1 MTR_7g091370 38.610 259 111 4 12 270 16 226 5.13e-49 163
MS.gene006320.t1 MTR_5g029680 65.957 94 32 0 16 109 30 123 3.46e-41 149
MS.gene006320.t1 MTR_7g095680 60.638 94 37 0 16 109 47 140 5.52e-40 143
MS.gene006320.t1 MTR_4g088900 39.024 205 97 6 4 199 17 202 5.33e-39 136
MS.gene006320.t1 MTR_1g071360 61.702 94 36 0 16 109 30 123 1.90e-38 139
MS.gene006320.t1 MTR_1g071360 61.702 94 36 0 16 109 27 120 2.77e-38 139
MS.gene006320.t1 MTR_6g043060 57.143 105 42 1 17 118 21 125 7.17e-38 137
MS.gene006320.t1 MTR_1g102860 61.702 94 36 0 16 109 38 131 3.97e-37 135
MS.gene006320.t1 MTR_4g077970 40.782 179 85 2 18 196 12 169 9.59e-37 137
MS.gene006320.t1 MTR_1g061170 42.105 171 70 2 12 182 43 184 2.77e-36 135
MS.gene006320.t1 MTR_8g087540 55.000 100 45 0 14 113 8 107 3.00e-36 134
MS.gene006320.t1 MTR_2g100680 58.163 98 41 0 16 113 29 126 1.90e-35 133
MS.gene006320.t1 MTR_6g086805 56.311 103 45 0 9 111 2 104 4.53e-35 130
MS.gene006320.t1 MTR_3g104550 51.402 107 52 0 16 122 44 150 1.39e-34 129
MS.gene006320.t1 MTR_8g083100 56.842 95 41 0 19 113 23 117 3.45e-34 130
MS.gene006320.t1 MTR_2g100670 53.061 98 46 0 16 113 31 128 7.00e-33 123
MS.gene006320.t1 MTR_2g017890 48.062 129 61 3 6 133 4 127 8.61e-33 124
MS.gene006320.t1 MTR_2g100670 54.167 96 44 0 16 111 139 234 6.20e-32 123
MS.gene006320.t1 MTR_8g105780 55.914 93 40 1 18 109 22 114 2.56e-29 115
MS.gene006320.t1 MTR_4g045757 63.793 58 21 0 18 75 14 71 8.24e-21 85.1
MS.gene006320.t1 MTR_5g047190 38.462 91 49 2 26 109 1 91 6.48e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006320.t1 AT5G62020 44.013 309 132 7 11 303 16 299 1.42e-75 233
MS.gene006320.t1 AT4G11660 47.887 284 99 5 10 252 51 326 1.15e-70 223
MS.gene006320.t1 AT1G46264 48.039 204 86 3 13 196 29 232 4.41e-58 190
MS.gene006320.t1 AT4G36990 48.500 200 85 2 11 201 7 197 6.19e-54 177
MS.gene006320.t1 AT2G41690 46.111 180 97 0 16 195 38 217 8.20e-45 152
MS.gene006320.t1 AT4G17750 65.000 100 35 0 14 113 48 147 2.26e-41 150
MS.gene006320.t1 AT3G22830 64.583 96 34 0 14 109 57 152 8.17e-40 144
MS.gene006320.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.18e-39 144
MS.gene006320.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.30e-39 144
MS.gene006320.t1 AT3G02990 62.500 96 36 0 14 109 19 114 7.31e-38 140
MS.gene006320.t1 AT5G16820 64.130 92 33 0 18 109 27 118 8.28e-37 137
MS.gene006320.t1 AT5G16820 64.130 92 33 0 18 109 27 118 8.28e-37 137
MS.gene006320.t1 AT3G63350 54.630 108 48 1 1 108 12 118 1.26e-36 132
MS.gene006320.t1 AT5G43840 56.311 103 45 0 16 118 17 119 4.92e-36 131
MS.gene006320.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.20e-35 133
MS.gene006320.t1 AT5G03720 43.030 165 65 2 18 182 55 190 1.20e-35 133
MS.gene006320.t1 AT2G26150 57.447 94 40 0 16 109 42 135 1.39e-35 131
MS.gene006320.t1 AT2G26150 57.447 94 40 0 16 109 42 135 1.39e-35 131
MS.gene006320.t1 AT3G51910 50.943 106 52 0 16 121 27 132 2.79e-35 129
MS.gene006320.t1 AT5G54070 58.696 92 38 0 17 108 70 161 3.02e-34 127
MS.gene006320.t1 AT4G13980 50.000 112 53 1 19 127 24 135 1.93e-33 128
MS.gene006320.t1 AT3G24520 58.696 92 38 0 18 109 17 108 9.76e-33 123
MS.gene006320.t1 AT1G67970 43.182 132 74 1 18 148 19 150 1.37e-31 121
MS.gene006320.t1 AT5G45710 49.593 123 60 1 6 128 3 123 2.74e-31 120
MS.gene006320.t1 AT5G45710 49.593 123 60 1 6 128 3 123 2.74e-31 120
MS.gene006320.t1 AT4G18880 55.660 106 46 1 8 113 6 110 5.09e-31 120
MS.gene006320.t1 AT4G18870 41.304 92 51 1 14 102 139 230 3.45e-19 86.3
MS.gene006320.t1 AT4G18870 37.755 98 56 3 10 105 5 99 1.34e-16 79.0
MS.gene006320.t1 AT1G77570 37.500 88 50 3 19 102 27 113 5.97e-11 60.1

Find 81 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCGTCGCCGTCAATTTC+AGG 0.165701 1.1:+72807097 MS.gene006320:CDS
TTGTTGTGCTTAAAATATTT+AGG 0.304096 1.1:-72806783 None:intergenic
TCGCTATCCCAAACAGCTTC+GGG 0.346813 1.1:-72807408 None:intergenic
CGTCATGAACAGAATGATTC+AGG 0.355966 1.1:-72807489 None:intergenic
ATAGAAACCCGAAGCTGTTT+GGG 0.374692 1.1:+72807401 MS.gene006320:CDS
CTGGAACAACGTTCATCGTT+TGG 0.377410 1.1:+72806730 MS.gene006320:CDS
ATCGCTATCCCAAACAGCTT+CGG 0.386863 1.1:-72807409 None:intergenic
GATAGAAACCCGAAGCTGTT+TGG 0.391219 1.1:+72807400 MS.gene006320:CDS
TTCCTCGCCGTCAGTTTCTC+CGG 0.410639 1.1:+72807144 MS.gene006320:CDS
GAAGACACTTCGTTTGTTAC+CGG 0.411007 1.1:+72807342 MS.gene006320:CDS
AATCAGAGCCGTTTGATTCA+AGG 0.418470 1.1:+72807515 MS.gene006320:CDS
GTGATTTCGTGGAATGATAC+TGG 0.437195 1.1:+72806711 MS.gene006320:CDS
CGAGAATGAGAGGTTGAGAA+AGG 0.441779 1.1:+72807180 MS.gene006320:CDS
TCGCCGTTGCATCGCTTCTC+CGG 0.453691 1.1:-72807361 None:intergenic
GTCAATTTCAGGGGAGGAGC+AGG 0.455410 1.1:+72807108 MS.gene006320:CDS
CCGGCATTGGAAGCTGCCGC+CGG 0.458057 1.1:-72807037 None:intergenic
TGTTACAGTCGTGCCGGCAT+TGG 0.462484 1.1:-72807050 None:intergenic
TCACCCTTCCTTGAATCAAA+CGG 0.468104 1.1:-72807523 None:intergenic
TTAGAGAATTCCCACCGATC+AGG 0.468408 1.1:-72806944 None:intergenic
TCGCGTCGCCGTCAATTTCA+GGG 0.475190 1.1:+72807098 MS.gene006320:CDS
ATCAACAAGGTGATATGTCT+TGG 0.476007 1.1:-72806670 None:intergenic
CCACCAACGATGTGATTTCG+TGG 0.481252 1.1:+72806700 MS.gene006320:CDS
AAGCAAATCCCTAGCGAAAA+CGG 0.486758 1.1:-72806760 None:intergenic
CCGGCGGCAGCTTCCAATGC+CGG 0.495670 1.1:+72807037 MS.gene006320:CDS
TTCCTCCAGCATGGCTCCGT+CGG 0.496527 1.1:+72806599 None:intergenic
GCAGTTAACAAAGGAAATAG+AGG 0.498390 1.1:+72807210 MS.gene006320:CDS
CCACGAAATCACATCGTTGG+TGG 0.498992 1.1:-72806700 None:intergenic
GAATTACATAAGTATTGAGT+TGG 0.503981 1.1:-72806824 None:intergenic
CAACGGCGAAGATGCGGCGG+TGG 0.504131 1.1:+72807375 MS.gene006320:CDS
GCGAAGGGAGCGAGAGGAGA+AGG 0.505444 1.1:+72807436 MS.gene006320:CDS
TGCTCCTCCCCTGAAATTGA+CGG 0.505469 1.1:-72807106 None:intergenic
CTCCAGCATGGCTCCGTCGG+TGG 0.505487 1.1:+72806602 None:intergenic
CAATCGGAAAGCGGTGCGGA+AGG 0.507695 1.1:+72807289 MS.gene006320:CDS
AACAAACGAAGTGTCTTCAC+TGG 0.512152 1.1:-72807337 None:intergenic
TGAATCTTTCCGACGAGGCG+AGG 0.528771 1.1:+72806967 MS.gene006320:CDS
ATTCAAGGAAGGGTGAAAAG+AGG 0.529327 1.1:+72807530 MS.gene006320:CDS
TGATATGTCTTGGTGAGAAA+CGG 0.529943 1.1:-72806660 None:intergenic
AGGAGAAGGACGGTGTATTG+AGG 0.542287 1.1:+72807450 MS.gene006320:CDS
AAATTACGCGAATTCTCAAT+CGG 0.544595 1.1:+72807273 MS.gene006320:CDS
TGGGATAGCGATTGATGCGA+AGG 0.546227 1.1:+72807420 MS.gene006320:CDS
GAAAATCGTTTCAGCATCGC+CGG 0.555017 1.1:+72807018 MS.gene006320:CDS
CGCTATTAGACGAGAATGAG+AGG 0.557066 1.1:+72807170 MS.gene006320:CDS
TTCTCGTCTAATAGCGCCGC+CGG 0.558116 1.1:-72807163 None:intergenic
AAAAGTTGTACCTGATCGGT+GGG 0.563579 1.1:+72806934 MS.gene006320:CDS
GAAATTGACGGCGACGCGAT+AGG 0.563683 1.1:-72807094 None:intergenic
GCGATGCAACGGCGAAGATG+CGG 0.565053 1.1:+72807369 MS.gene006320:CDS
AAATCCCTAGCGAAAACGGT+AGG 0.568543 1.1:-72806756 None:intergenic
GAGCCGTTTGATTCAAGGAA+GGG 0.572438 1.1:+72807520 MS.gene006320:CDS
GCTCCGTCGGTGGAACATAA+CGG 0.578392 1.1:+72806612 MS.gene006320:CDS
GGTGAGAAACGGCGTCGGAG+TGG 0.597255 1.1:-72806649 None:intergenic
CTTTCCGACGAGGCGAGGAA+CGG 0.598393 1.1:+72806972 MS.gene006320:CDS
AGAGCCGTTTGATTCAAGGA+AGG 0.601442 1.1:+72807519 MS.gene006320:CDS
ATGCAACGGCGAAGATGCGG+CGG 0.602868 1.1:+72807372 MS.gene006320:CDS
ACAAACGAAGTGTCTTCACT+GGG 0.603590 1.1:-72807336 None:intergenic
ATTGATGCGAAGGGAGCGAG+AGG 0.606253 1.1:+72807430 MS.gene006320:CDS
AATCCCTAGCGAAAACGGTA+GGG 0.608706 1.1:-72806755 None:intergenic
ATTCCACGAAATCACATCGT+TGG 0.610773 1.1:-72806703 None:intergenic
GTCGCCGTCAATTTCAGGGG+AGG 0.611650 1.1:+72807102 MS.gene006320:CDS
TTCTCAATCGGAAAGCGGTG+CGG 0.614474 1.1:+72807285 MS.gene006320:CDS
CGCCGGAGAAACTGACGGCG+AGG 0.620198 1.1:-72807146 None:intergenic
CTCGCCGTCAGTTTCTCCGG+CGG 0.622387 1.1:+72807147 MS.gene006320:CDS
TTACCGGAGAAGCGATGCAA+CGG 0.623684 1.1:+72807358 MS.gene006320:CDS
TTCTCTGTGATATTCAGCGA+CGG 0.625241 1.1:+72806996 MS.gene006320:CDS
CGCGTCGCCGTCAATTTCAG+GGG 0.626408 1.1:+72807099 MS.gene006320:CDS
GACGCGATAGGCTTTGCTGT+CGG 0.627107 1.1:-72807082 None:intergenic
GAAGCCGTTCCTCGCCTCGT+CGG 0.628152 1.1:-72806976 None:intergenic
GGGATAGCGATTGATGCGAA+GGG 0.631957 1.1:+72807421 MS.gene006320:CDS
GGAGAACATGCAGTTAACAA+AGG 0.636251 1.1:+72807201 MS.gene006320:CDS
TGGTGGCGATTTCATCAACA+AGG 0.649485 1.1:-72806683 None:intergenic
AGGGAGCGAGAGGAGAAGGA+CGG 0.652383 1.1:+72807440 MS.gene006320:CDS
AGCGCCGCCGGAGAAACTGA+CGG 0.654739 1.1:-72807151 None:intergenic
AGGAAAAGAATGTTGCTCAA+CGG 0.662127 1.1:+72807309 MS.gene006320:CDS
AATCGTTTCAGCATCGCCGG+CGG 0.666535 1.1:+72807021 MS.gene006320:CDS
GTCTTGGTGAGAAACGGCGT+CGG 0.667306 1.1:-72806654 None:intergenic
ACGGTGTATTGAGGATGATG+TGG 0.668550 1.1:+72807459 MS.gene006320:CDS
TCGCCGTTATGTTCCACCGA+CGG 0.686749 1.1:-72806615 None:intergenic
GCGAATTCTCAATCGGAAAG+CGG 0.695773 1.1:+72807280 MS.gene006320:CDS
GTGAAAAGAGGAAAATGATG+CGG 0.699862 1.1:+72807542 MS.gene006320:CDS
TCTAATGAATCTTTCCGACG+AGG 0.711943 1.1:+72806962 MS.gene006320:CDS
CGGCACGACTGTAACAAAAG+CGG 0.729434 1.1:+72807057 MS.gene006320:CDS
CAAACGAAGTGTCTTCACTG+GGG 0.815726 1.1:-72807335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTGTGTTAATTT+TGG + chr1.1:72806893-72806912 MS.gene006320:intron 10.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr1.1:72806786-72806805 None:intergenic 20.0%
!!! GTTAATTTTGGTTATTTTCA+GGG + chr1.1:72806905-72806924 MS.gene006320:intron 20.0%
!!! TGTTAATTTTGGTTATTTTC+AGG + chr1.1:72806904-72806923 MS.gene006320:intron 20.0%
! TTAAAAAAGTTGTACCTGAT+CGG + chr1.1:72806930-72806949 MS.gene006320:CDS 25.0%
!!! GAATTACATAAGTATTGAGT+TGG - chr1.1:72806827-72806846 None:intergenic 25.0%
AAATTACGCGAATTCTCAAT+CGG + chr1.1:72807273-72807292 MS.gene006320:CDS 30.0%
AGGAAAAGAATGTTGCTCAA+CGG + chr1.1:72807309-72807328 MS.gene006320:CDS 35.0%
ATCAACAAGGTGATATGTCT+TGG - chr1.1:72806673-72806692 None:intergenic 35.0%
GCAGTTAACAAAGGAAATAG+AGG + chr1.1:72807210-72807229 MS.gene006320:CDS 35.0%
GTGAAAAGAGGAAAATGATG+CGG + chr1.1:72807542-72807561 MS.gene006320:CDS 35.0%
TGATATGTCTTGGTGAGAAA+CGG - chr1.1:72806663-72806682 None:intergenic 35.0%
AAAAAGTTGTACCTGATCGG+TGG + chr1.1:72806933-72806952 MS.gene006320:CDS 40.0%
AAAAGTTGTACCTGATCGGT+GGG + chr1.1:72806934-72806953 MS.gene006320:CDS 40.0%
AAGCAAATCCCTAGCGAAAA+CGG - chr1.1:72806763-72806782 None:intergenic 40.0%
AATCAGAGCCGTTTGATTCA+AGG + chr1.1:72807515-72807534 MS.gene006320:CDS 40.0%
ATAGAAACCCGAAGCTGTTT+GGG + chr1.1:72807401-72807420 MS.gene006320:CDS 40.0%
ATTCAAGGAAGGGTGAAAAG+AGG + chr1.1:72807530-72807549 MS.gene006320:CDS 40.0%
ATTCCACGAAATCACATCGT+TGG - chr1.1:72806706-72806725 None:intergenic 40.0%
CGTCATGAACAGAATGATTC+AGG - chr1.1:72807492-72807511 None:intergenic 40.0%
GGAGAACATGCAGTTAACAA+AGG + chr1.1:72807201-72807220 MS.gene006320:CDS 40.0%
GTGATTTCGTGGAATGATAC+TGG + chr1.1:72806711-72806730 MS.gene006320:CDS 40.0%
TCACCCTTCCTTGAATCAAA+CGG - chr1.1:72807526-72807545 None:intergenic 40.0%
TCTAATGAATCTTTCCGACG+AGG + chr1.1:72806962-72806981 MS.gene006320:CDS 40.0%
TTCTCTGTGATATTCAGCGA+CGG + chr1.1:72806996-72807015 MS.gene006320:CDS 40.0%
! AACAAACGAAGTGTCTTCAC+TGG - chr1.1:72807340-72807359 None:intergenic 40.0%
! ACAAACGAAGTGTCTTCACT+GGG - chr1.1:72807339-72807358 None:intergenic 40.0%
! GAAGACACTTCGTTTGTTAC+CGG + chr1.1:72807342-72807361 MS.gene006320:CDS 40.0%
AAATCCCTAGCGAAAACGGT+AGG - chr1.1:72806759-72806778 None:intergenic 45.0%
AATCCCTAGCGAAAACGGTA+GGG - chr1.1:72806758-72806777 None:intergenic 45.0%
ACGGTGTATTGAGGATGATG+TGG + chr1.1:72807459-72807478 MS.gene006320:CDS 45.0%
AGAGCCGTTTGATTCAAGGA+AGG + chr1.1:72807519-72807538 MS.gene006320:CDS 45.0%
ATCGCTATCCCAAACAGCTT+CGG - chr1.1:72807412-72807431 None:intergenic 45.0%
CGAGAATGAGAGGTTGAGAA+AGG + chr1.1:72807180-72807199 MS.gene006320:CDS 45.0%
CGCTATTAGACGAGAATGAG+AGG + chr1.1:72807170-72807189 MS.gene006320:CDS 45.0%
CTGGAACAACGTTCATCGTT+TGG + chr1.1:72806730-72806749 MS.gene006320:CDS 45.0%
GAAAATCGTTTCAGCATCGC+CGG + chr1.1:72807018-72807037 MS.gene006320:CDS 45.0%
GAGCCGTTTGATTCAAGGAA+GGG + chr1.1:72807520-72807539 MS.gene006320:CDS 45.0%
GATAGAAACCCGAAGCTGTT+TGG + chr1.1:72807400-72807419 MS.gene006320:CDS 45.0%
GCGAATTCTCAATCGGAAAG+CGG + chr1.1:72807280-72807299 MS.gene006320:CDS 45.0%
TTAGAGAATTCCCACCGATC+AGG - chr1.1:72806947-72806966 None:intergenic 45.0%
! CAAACGAAGTGTCTTCACTG+GGG - chr1.1:72807338-72807357 None:intergenic 45.0%
! TGGTGGCGATTTCATCAACA+AGG - chr1.1:72806686-72806705 None:intergenic 45.0%
AGGAGAAGGACGGTGTATTG+AGG + chr1.1:72807450-72807469 MS.gene006320:CDS 50.0%
CCACCAACGATGTGATTTCG+TGG + chr1.1:72806700-72806719 MS.gene006320:CDS 50.0%
CCACGAAATCACATCGTTGG+TGG - chr1.1:72806703-72806722 None:intergenic 50.0%
CGGCACGACTGTAACAAAAG+CGG + chr1.1:72807057-72807076 MS.gene006320:CDS 50.0%
GGGATAGCGATTGATGCGAA+GGG + chr1.1:72807421-72807440 MS.gene006320:CDS 50.0%
TCGCTATCCCAAACAGCTTC+GGG - chr1.1:72807411-72807430 None:intergenic 50.0%
TGCTCCTCCCCTGAAATTGA+CGG - chr1.1:72807109-72807128 None:intergenic 50.0%
TGGGATAGCGATTGATGCGA+AGG + chr1.1:72807420-72807439 MS.gene006320:CDS 50.0%
TTACCGGAGAAGCGATGCAA+CGG + chr1.1:72807358-72807377 MS.gene006320:CDS 50.0%
TTCTCAATCGGAAAGCGGTG+CGG + chr1.1:72807285-72807304 MS.gene006320:CDS 50.0%
! CGCTTTTGTTACAGTCGTGC+CGG - chr1.1:72807059-72807078 None:intergenic 50.0%
! GAACCCTACCGTTTTCGCTA+GGG + chr1.1:72806752-72806771 MS.gene006320:CDS 50.0%
AATCGTTTCAGCATCGCCGG+CGG + chr1.1:72807021-72807040 MS.gene006320:CDS 55.0%
ATCGCGTCGCCGTCAATTTC+AGG + chr1.1:72807097-72807116 MS.gene006320:CDS 55.0%
ATTGATGCGAAGGGAGCGAG+AGG + chr1.1:72807430-72807449 MS.gene006320:CDS 55.0%
GAAATTGACGGCGACGCGAT+AGG - chr1.1:72807097-72807116 None:intergenic 55.0%
GCTCCGTCGGTGGAACATAA+CGG + chr1.1:72806612-72806631 MS.gene006320:CDS 55.0%
GTCAATTTCAGGGGAGGAGC+AGG + chr1.1:72807108-72807127 MS.gene006320:CDS 55.0%
GTCTTGGTGAGAAACGGCGT+CGG - chr1.1:72806657-72806676 None:intergenic 55.0%
TCGCCGTTATGTTCCACCGA+CGG - chr1.1:72806618-72806637 None:intergenic 55.0%
TCGCGTCGCCGTCAATTTCA+GGG + chr1.1:72807098-72807117 MS.gene006320:CDS 55.0%
TGAATCTTTCCGACGAGGCG+AGG + chr1.1:72806967-72806986 MS.gene006320:CDS 55.0%
TTCCTCGCCGTCAGTTTCTC+CGG + chr1.1:72807144-72807163 MS.gene006320:CDS 55.0%
TTCTCGTCTAATAGCGCCGC+CGG - chr1.1:72807166-72807185 None:intergenic 55.0%
! GACGCGATAGGCTTTGCTGT+CGG - chr1.1:72807085-72807104 None:intergenic 55.0%
! GGAACCCTACCGTTTTCGCT+AGG + chr1.1:72806751-72806770 MS.gene006320:CDS 55.0%
! TGTTACAGTCGTGCCGGCAT+TGG - chr1.1:72807053-72807072 None:intergenic 55.0%
AGGGAGCGAGAGGAGAAGGA+CGG + chr1.1:72807440-72807459 MS.gene006320:CDS 60.0%
ATGCAACGGCGAAGATGCGG+CGG + chr1.1:72807372-72807391 MS.gene006320:CDS 60.0%
CAATCGGAAAGCGGTGCGGA+AGG + chr1.1:72807289-72807308 MS.gene006320:CDS 60.0%
CGCGTCGCCGTCAATTTCAG+GGG + chr1.1:72807099-72807118 MS.gene006320:CDS 60.0%
CTTTCCGACGAGGCGAGGAA+CGG + chr1.1:72806972-72806991 MS.gene006320:CDS 60.0%
GCGATGCAACGGCGAAGATG+CGG + chr1.1:72807369-72807388 MS.gene006320:CDS 60.0%
GTCGCCGTCAATTTCAGGGG+AGG + chr1.1:72807102-72807121 MS.gene006320:CDS 60.0%
TCGCCGTTGCATCGCTTCTC+CGG - chr1.1:72807364-72807383 None:intergenic 60.0%
AGCGCCGCCGGAGAAACTGA+CGG - chr1.1:72807154-72807173 None:intergenic 65.0%
CTCGCCGTCAGTTTCTCCGG+CGG + chr1.1:72807147-72807166 MS.gene006320:CDS 65.0%
GAAGCCGTTCCTCGCCTCGT+CGG - chr1.1:72806979-72806998 None:intergenic 65.0%
GCGAAGGGAGCGAGAGGAGA+AGG + chr1.1:72807436-72807455 MS.gene006320:CDS 65.0%
! GGTGAGAAACGGCGTCGGAG+TGG - chr1.1:72806652-72806671 None:intergenic 65.0%
CAACGGCGAAGATGCGGCGG+TGG + chr1.1:72807375-72807394 MS.gene006320:CDS 70.0%
CCGGCGGCAGCTTCCAATGC+CGG + chr1.1:72807037-72807056 MS.gene006320:CDS 70.0%
CGCCGGAGAAACTGACGGCG+AGG - chr1.1:72807149-72807168 None:intergenic 70.0%
! CCGGCATTGGAAGCTGCCGC+CGG - chr1.1:72807040-72807059 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72806609 72807606 72806609 ID=MS.gene006320
chr1.1 mRNA 72806609 72807606 72806609 ID=MS.gene006320.t1;Parent=MS.gene006320
chr1.1 exon 72806609 72806839 72806609 ID=MS.gene006320.t1.exon1;Parent=MS.gene006320.t1
chr1.1 CDS 72806609 72806839 72806609 ID=cds.MS.gene006320.t1;Parent=MS.gene006320.t1
chr1.1 exon 72806926 72807606 72806926 ID=MS.gene006320.t1.exon2;Parent=MS.gene006320.t1
chr1.1 CDS 72806926 72807606 72806926 ID=cds.MS.gene006320.t1;Parent=MS.gene006320.t1
Gene Sequence

>MS.gene006320

ATGGCTCCGTCGGTGGAACATAACGGCGAGTCTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACATATCACCTTGTTGATGAAATCGCCACCAACGATGTGATTTCGTGGAATGATACTGGAACAACGTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGTAATTCACTCATCATCATCGAAGCTATTTGATTTTTTTTTTATTTGAATTTATTTTTTATTTGTGTTAATTTTGGTTATTTTCAGGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAATGAATCTTTCCGACGAGGCGAGGAACGGCTTCTCTGTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGGCAGCTTCCAATGCCGGCACGACTGTAACAAAAGCGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGGGAGGAGCAGGTGATTTCTTCGAATTCCTCGCCGTCAGTTTCTCCGGCGGCGCTATTAGACGAGAATGAGAGGTTGAGAAAGGAGAACATGCAGTTAACAAAGGAAATAGAGGACATGAAATCGCTCTACAACAATATATTCAATCTTCTGTCAAATTACGCGAATTCTCAATCGGAAAGCGGTGCGGAAGGAAAAGAATGTTGCTCAACGGCGTCCCCAGTGAAGACACTTCGTTTGTTACCGGAGAAGCGATGCAACGGCGAAGATGCGGCGGTGGAAGATAGAAACCCGAAGCTGTTTGGGATAGCGATTGATGCGAAGGGAGCGAGAGGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTGAATCATTCTGTTCATGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGATGCGGTTAAATCAGTGCTATAGAGCGAATCAGAGTGTGTGCAATTGA
Protein sequence

>MS.gene006320.t1

MAPSVEHNGESQRSTPTPFLTKTYHLVDEIATNDVISWNDTGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLCDIQRRKIVSASPAAASNAGTTVTKAVPTAKPIASPSISGEEQVISSNSSPSVSPAALLDENERLRKENMQLTKEIEDMKSLYNNIFNLLSNYANSQSESGAEGKECCSTASPVKTLRLLPEKRCNGEDAAVEDRNPKLFGIAIDAKGARGEGRCIEDDVVLSLNHSVHDVKSEPFDSRKGEKRKMMRLNQCYRANQSVCN