AlfalfaGEDB | MS.gene006326

M. sativa cultivar XinJiangDaYe / MS.gene006326

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006326.t1	XP_024625341.1	94.8	885	44	1	18	902	1	883	0.00E+00	1706.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006326.t1	Q9SZL8	31.0	691	453	6	30	699	6	693	4.4e-92	340.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006326.t1	A0A396K1J9	94.8	885	44	1	18	902	1	883	0.0e+00	1706.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene006326.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006326.t1	MTR_6g051425	28.477	302	190	7	82	361	19	316	2.31e-32	129
MS.gene006326.t1	MTR_5g015480	46.364	110	58	1	71	179	47	156	2.56e-23	100
MS.gene006326.t1	MTR_0558s0020	24.214	318	190	7	33	322	1	295	1.85e-22	99.4
MS.gene006326.t1	MTR_0402s0040	31.795	195	129	3	71	264	17	208	7.68e-22	100
MS.gene006326.t1	MTR_6g017200	39.535	129	73	2	48	175	30	154	3.97e-21	91.3
MS.gene006326.t1	MTR_2g070590	41.818	110	63	1	71	179	8	117	1.27e-20	88.6
MS.gene006326.t1	MTR_4g067290	35.669	157	89	5	44	197	27	174	1.56e-19	89.4
MS.gene006326.t1	MTR_4g067290	35.099	151	89	4	44	194	27	168	2.36e-19	88.6
MS.gene006326.t1	MTR_4g067290	35.669	157	89	5	44	197	47	194	2.57e-19	89.0
MS.gene006326.t1	MTR_1g057920	45.455	88	47	1	82	168	36	123	3.28e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006326.t1	AT4G38180	32.120	632	405	6	30	640	6	634	1.09e-103	340
MS.gene006326.t1	AT4G15090	26.984	819	532	14	83	894	54	813	1.65e-91	308
MS.gene006326.t1	AT4G15090	26.984	819	532	14	83	894	54	813	1.65e-91	308
MS.gene006326.t1	AT4G15090	26.984	819	532	14	83	894	54	813	1.65e-91	308
MS.gene006326.t1	AT4G15090	26.984	819	532	14	83	894	54	813	1.65e-91	308
MS.gene006326.t1	AT4G15090	26.984	819	532	14	83	894	54	813	1.65e-91	308
MS.gene006326.t1	AT3G06250	30.658	623	374	10	83	702	193	760	5.62e-90	302
MS.gene006326.t1	AT3G06250	35.354	99	51	1	82	180	30	115	6.55e-12	70.1
MS.gene006326.t1	AT3G06250	30.658	623	374	10	83	702	193	760	5.62e-90	302
MS.gene006326.t1	AT3G06250	35.354	99	51	1	82	180	30	115	6.55e-12	70.1

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Find 178 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGGATTCTGAATG+AGG	0.519697	1.1:+72909921	None:intergenic
AAAGGCAAGGAGAACTCTGT+TGG	0.577643	1.1:+72910241	None:intergenic
AAATTTACCTGCTCCAGAGA+GGG	0.588352	1.1:-72912608	MS.gene006326:CDS
AACAAACAACATCCCCAAAA+TGG	0.411804	1.1:+72912078	None:intergenic
AACAACATGTTAGAATTGAT+TGG	0.361206	1.1:+72912431	None:intergenic
AACAAGTATGCCAGATTGAT+GGG	0.458593	1.1:-72912692	MS.gene006326:CDS
AACATTGAACCCCATCAATC+TGG	0.425557	1.1:+72912682	None:intergenic
AAGAATTTACTCATGCTTGG+GGG	0.622092	1.1:-72911692	MS.gene006326:CDS
AAGAGCTTCTGAATCTGTGG+AGG	0.588474	1.1:-72910953	MS.gene006326:CDS
AAGATAATTGTCATAATTCA+TGG	0.332546	1.1:+72912271	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACAGGATTCTGAATG+AGG	+	chr1.1:72915142-72915161	None:intergenic	30.0%
AATCCTTTGCAAATGATCTA+AGG	-	chr1.1:72913317-72913336	MS.gene006326:intron	30.0%
AATTCAAGATAACCCTAAGA+TGG	-	chr1.1:72914032-72914051	MS.gene006326:intron	30.0%
ACAATTATCTTCATTCTGTG+AGG	-	chr1.1:72912801-72912820	MS.gene006326:CDS	30.0%
ACACCTAAAAACTGTACAAA+TGG	+	chr1.1:72913043-72913062	None:intergenic	30.0%
ACCGGTCTACAAATTTATAA+TGG	+	chr1.1:72910399-72910418	None:intergenic	30.0%
ACTTAAAGCTGAACTAGATT+TGG	+	chr1.1:72912723-72912742	None:intergenic	30.0%
AGACCATCGAATCATTTAAT+TGG	-	chr1.1:72913113-72913132	MS.gene006326:intron	30.0%
AGATTGGATTAATAGGAGTA+AGG	-	chr1.1:72912406-72912425	MS.gene006326:CDS	30.0%
ATGAAAAACCTTCACCAAAT+TGG	+	chr1.1:72912113-72912132	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	72909881	72915201	72909881	ID=MS.gene006326
chr1.1	mRNA	72909881	72915201	72909881	ID=MS.gene006326.t1;Parent=MS.gene006326
chr1.1	exon	72915158	72915201	72915158	ID=MS.gene006326.t1.exon1;Parent=MS.gene006326.t1
chr1.1	CDS	72915158	72915201	72915158	ID=cds.MS.gene006326.t1;Parent=MS.gene006326.t1
chr1.1	exon	72910594	72912958	72910594	ID=MS.gene006326.t1.exon2;Parent=MS.gene006326.t1
chr1.1	CDS	72910594	72912958	72910594	ID=cds.MS.gene006326.t1;Parent=MS.gene006326.t1
chr1.1	exon	72910227	72910379	72910227	ID=MS.gene006326.t1.exon3;Parent=MS.gene006326.t1
chr1.1	CDS	72910227	72910379	72910227	ID=cds.MS.gene006326.t1;Parent=MS.gene006326.t1
chr1.1	exon	72910085	72910144	72910085	ID=MS.gene006326.t1.exon4;Parent=MS.gene006326.t1
chr1.1	CDS	72910085	72910144	72910085	ID=cds.MS.gene006326.t1;Parent=MS.gene006326.t1
chr1.1	exon	72909881	72909967	72909881	ID=MS.gene006326.t1.exon5;Parent=MS.gene006326.t1
chr1.1	CDS	72909881	72909967	72909881	ID=cds.MS.gene006326.t1;Parent=MS.gene006326.t1

Gene Sequence

>MS.gene006326

ATGCGAAAAGCTTATATTAGACCTCACATCCTACCTAGCTCAACGTAAGTTATTTATTATTAGACTAGTGGGTCAAAGAGGACTACATTCACTCATGATTAAATCTTTAAATACTCAGCAATATATAAAGAGAGCTAATATTTAAACAACCAAGATTTTGATACCGTATTAGACCGTATAGTTTTTCCTCTTCTAATGATGTGTACGAAAGCTGAGGTAGATAAAATATATAGATAAAATATATGCATTGAAAAGCTATAAATTGTATCCGATTGTATGAATATACGTTTGTGCATTTTGGTTGTTTATGAATCATATCTCATATATAAATTGTAGTATTCTAAGCCATGAAAGCATGAAATCTTTACTTTCTTCTTTCATAGAAAACATGACCCTTTTCTCCTAGAAATCGGAGGGTTAACGAAAACAAGAAAAGGTTGGATCAATATTTGATCGACCAATAAAAATCCTTCGAGATGTATTTATGATACTCCCTCTTGCAACAAATATAATTTCCATTATAAATTTGTAGACCGGTAAAACCAACATCAAATATCATTGATGAATTGAGGGTAATTTATCCATGATGATGTGTAAGATTCGATTTTATAACGAATGAGATGGAAATCATATGTTGAATGAAAGAGATGAATTTTTTTTATGTTTTTAAAATGAAAATGGTAACTAATTATAAGAAGAAGAAAAAAAACCATTTTCTATTGGTTTAGATCCTTCGGGATGTAATCAATTAGAATTTTAAAAAATAAAAATAAAAGACTTCTTTATGATGAAAAAACTCTATGGTATGCAATCAAGACTTTTAATTGATCTAAATAAATCTTATATTCAATTAAAATAATATGAATTTTTTAACTGGGTATAAAAATATATTGATCAATCAAGACTTTTTACAATTTTAAAAATAGTTTGTGGTATTAAAAAATATTTTGATGGATTATTTAATAAATAGTATAGTATTTTAATAGACTTAATGAGACATTTTAGTTAGTTTTTAACATTAAAAAGCCTTTCATCAAGACATAAGATTTCTATGAATTTCCATTTCATGTGTTTCTTGTCCATGACCTAATATATTTTCATCCAACAAAAACATGATTTCTATTTTACTTTAAAATAAAAATCAACATAAACTTTTTTTGATTAAATTTTTATAAACATGGATAAATTATAGACTATTAATAATTTAATATAACAGAATTTTAGATAATGAAAGTTGACTTAATTGATAAGATGTCAACACACATGGAAGCTCGTGAGTTCAACTTTTCTTATTAATATGAGACTTTTAAGTGATTTGTAAATTTACACTCTTTGAGACTTTAGATTTGTTCTGACCTTATAAAACCCCAAAAATTCAAAACCTCTGTAATAGAGAAGTCGTATGTCTGCACTCTTTAAAATTAATCATTATGAACTTCGAAACTCAATTCACCCAAACTTTCTTTTCAACAAAAAAAAGTATATAATAATAAAATTTTAATAAAAAATAACAAATAATTGTATTCTTTTTTATCAAGGGGATTTTTTTTTTTTGAAGGAATTGATCGAGGGGAAAATAACAAATAATAATTGTAATAAAACAAACAAATCGATTTTCTTTTTGTTGAGGAAAGAAAACAAGCAAATTGAATTGAAACTGAGCGTTTTAACACACTTCAAAAGAAGCGCATGATTCTCTTCCCCATAGATACCCACCGTGTTAGGGTTTGCAGAATTGTCATACCCTTGTGAAATCAATTGAGCTTCAAATTATGCAATTTCCCCACCTCAATTTGAATTCATCGCGGTTCATCTATTGTTTCATTTCACCTATAACTCGCCAAGCTTAAAGACTATGGATAGTGTCGTGCGTCCACTGCATCATATTTCTTCCTTCCTTCTCCTGAATCAGTGATCAATTTCACAGTTCCAGTTTGTCTCAGTTAATACTGGTAAGGGTTGTTTCTTTCAATCAAAATGACATTTTTATGCAAATTAAAGCTTCTTTTCTTTTCTTTTTTTTTTTGTTGGATTTTTGTATGATCGATTTAGCATATTATTGTCTACTCAAATCAAATATGTAAATTGAAAAATGTAGCTATTTGGGTTTTGAGAATCATTGTGCATTCTGCATGTGATAAGTTATAGCCTTTTTTGGGGTTTTTTTTTATGTGATCATTTTGTTTTTTATATAAGTTGGAGTGAATTGAGTTAATTTAATTAGTTCTTCCAATTTGGTGAAGGTTTTTCATGGATGGTGATCATAACAACTTAGGTAATGTGCATGTAGAAAATGTTGATGTTGGACTTGGAACATCCAATAGTTTGGACTTGAATGTGGACCAAAATTGTTGCAGTCCGAACGTTCTTCACGCTAATGGCTCTCAAACTCAATCTGGTAATGCATCAGCAAATGGAGGCTTTGTCAACACAGTGTTCGGAATCGGTACGGTATTTGAGTCTGATGAACATGCATATAGATTCTATAACAAGTATGCCAGATTGATGGGGTTCAATGTTAGAAAAGATTGGATTAATAGGAGTAAGGTACATGGTATGGTGGTTTCTAGGAAATTTACCTGCTCCAGAGAGGGATATCGTAGGAAAGACAAGAGAGATTTTACTGTGAAGAAACATCGGAAGGAGACGAGAACTGGATGTTTGGCACACATGATCATTACTCGTCAACAAGATGGAAAATACCAGGTTACCCATTTTGAAGCACAACATAATCATGATGATATAAACCCAATCAATTCTAACATGTTGTTACTAGAGTTGCAAAATGAATTTTGTGTTGCTCAAGCTGTGGAGGTTGACTCGTATCATAATTTGGGACCCAAATCTAGTTCAGCTTTAAGTATGACGAATACAAAATTAGGTGCACGTGATACTCTTGATCAACTTTCCATGAATTATGACAATTATCTTCATTCTGTGAGGGAAAGAGATATGGGTAAAGGAGAAGCTGGACGTTTGATGGGTTATTTTCAAAGGCAACACTTTGAAAATCCAGCATTTTTTTATGCCATACAGCTCGATGTTGATGACAAGATAACAAATCTTTTCTGGGCTGATGACAATATGGTGGTAGATTACGACCATTTTGGGGATGTTGTTTGTTTGGATACAACTTGCAGAACAGACAGAGCTTTTCGGCCATTTGTACAGTTTTTAGGTGTTAATCATCACAAACAAGTATTAATATTTGCTGCTGCTTTTTTGTATGATGAGACCATCGAATCATTTAATTGGCTGTTTCGAACTTTCATTGGCGCAATGTCTGGGAAAAAGCCTAAGGCCATTATCACAGAACAAGATGCTGCAATCATCGAAGCAATCAATGTGGTTTTACCTGAAACAGACCGGTATACATGTGTTTGGCAGATGTATGAGAACACTCTTAAACATCTCAGCCATTTGGTTAAAGATGACGAATCCTTTGCAAATGATCTAAGGAGTTGTATATATGACCCCAAGGACGAGGAAGAATTTACTCATGCTTGGGGGGTTATGCTGGAGAAATATAAACTCCAGCGAAATGAATGGTTGAGATGGATGTATAGAGAAAGGGAGAAATGGGCTGTCTGCTTTGGTCAGAATAGATTTTTTGTAGATGTCAAAGGCTTTCATTTAGGTGAGATGTTGTCTCACAAGCTTAGAAGCTATCTAAATCCTGACCTTGATGTAGTTCAATTTCTTAACCATTTTGAAAGGATAGTGGAGGAGCAACGATATAAAGAAATAGAAGCTAGTGATGAAATGAAGGGATGTCTTCCAAAGCTAATGGGTAATGTGGTTGTGTTGAAACATGCTAGTGTTGCTTATACTCCAAGAGCATTTGAAATATTTCAGCAACGATATGAGAACTCTTTGAATGTTATTGTCAACCAGCACAAAAGAGATGGATATTTGTTTGAGTATAAAGTGAATACATTTGGACATGCTAGACAGTACACTGTCACCTTCAATTCTTCAGATAATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTAGGTTTTCTTTGTAGCCATGCACTAAAAGTTCTTGATAATAGAAACATAAAAGTAGTTCCATCTCGATATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGTAATGTCAGGGAGATTAAGCAATTTAAAATTCAAGATAACCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTATGCCACAGACTTGTCAAGTTATCGGCAAGAGCTTCTGAATCTGTGGAGGGTTATCGGTTTGCTGTGAGGCAACTTGACGAAGTTATGGAAGGAGTGCAGAAAATCTTGATATTGAAAAGTGAGGAAGCTCAAGTTATCACCTCAAATAGTATTCATGTAGATGCTTCAGAAAGTGAGCCTGCGGTGATCTTTCCGAATGGACATGCGACTGAGGATCAGGATGAAAGTAACAGAGTAAGCGAAGAAATTGACAGGACCGCTACACTGGATAGGTGCCAACCAACGGTGAATTATAATCAAACTGATTCAGATAGGATTTTAAATGTAGAACCTTCTTCAAATACTGTTGTCTGCATTTCATGCCCCCCATCTCCATATGTTTCATCTCAACCAAATCTCCCTTTGCAGGTAAGCTTTTATCATTTATTTGATTGATATATGGTAGCTTGTATTCTTGTGATCATATAGAGCATATTTGATATAGAGATCAGGAAGTTTAATGCTCTTTCTTTTTTTGCAATGAAGTTTTATGCTCGTTAACTTTTGGAGAATATGCTCTGTATAATTTTGAAATAAAAAATAAAGAGAACGGCATTTGTTGATTTTCTCATTTGTTTTACAGGGCTTATTTGGTTTTGAAACCAATGAAGTGGTTCAATGCATGTATGAACAGCCTGATCTTGTGTTAGATCATCAATCTAATACTAACCTGTTCCAACCGCCAAACTTCTATTCTAACCAACAGAGTTCTCCTTGCCTTTCTCAACTATCGCAGGTGTTAATTTTTCCAGTCATTAGGTTTTTTTTATATGCAGAATATGTTACTTTGTATAACATATCATGAATATTTTACTCAGGAGCCTATAATCCAAAACACATACCATGAGTCCGTGCCAAGCAATAATCAGATGCAACAGGTAAACATTTACTTAATGGTCATAATTTGAACAAACCCCCTTCCCAAACTTTTGGTGGGTTATCGGGTGTTTATGGTGGAAAACTAATTGCATCTGCTTTGTGTATATTTGCTGTAGGGTATGGATCTTGATATCCAAAATCCTCATTCAGAATCCTGTATTTTGCTGTGTGACCATAGATACCGAAGTTCTGACTCTGCATAA

Protein sequence

>MS.gene006326.t1

MRKAYIRPHILPSSTFFMDGDHNNLGNVHVENVDVGLGTSNSLDLNVDQNCCSPNVLHANGSQTQSGNASANGGFVNTVFGIGTVFESDEHAYRFYNKYARLMGFNVRKDWINRSKVHGMVVSRKFTCSREGYRRKDKRDFTVKKHRKETRTGCLAHMIITRQQDGKYQVTHFEAQHNHDDINPINSNMLLLELQNEFCVAQAVEVDSYHNLGPKSSSALSMTNTKLGARDTLDQLSMNYDNYLHSVRERDMGKGEAGRLMGYFQRQHFENPAFFYAIQLDVDDKITNLFWADDNMVVDYDHFGDVVCLDTTCRTDRAFRPFVQFLGVNHHKQVLIFAAAFLYDETIESFNWLFRTFIGAMSGKKPKAIITEQDAAIIEAINVVLPETDRYTCVWQMYENTLKHLSHLVKDDESFANDLRSCIYDPKDEEEFTHAWGVMLEKYKLQRNEWLRWMYREREKWAVCFGQNRFFVDVKGFHLGEMLSHKLRSYLNPDLDVVQFLNHFERIVEEQRYKEIEASDEMKGCLPKLMGNVVVLKHASVAYTPRAFEIFQQRYENSLNVIVNQHKRDGYLFEYKVNTFGHARQYTVTFNSSDNTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNVREIKQFKIQDNPKMVVASCYKDLCHRLVKLSARASESVEGYRFAVRQLDEVMEGVQKILILKSEEAQVITSNSIHVDASESEPAVIFPNGHATEDQDESNRVSEEIDRTATLDRCQPTVNYNQTDSDRILNVEPSSNTVVCISCPPSPYVSSQPNLPLQGLFGFETNEVVQCMYEQPDLVLDHQSNTNLFQPPNFYSNQQSSPCLSQLSQEPIIQNTYHESVPSNNQMQQGMDLDIQNPHSESCILLCDHRYRSSDSA