AlfalfaGEDB | MS.gene00633

M. sativa cultivar XinJiangDaYe / MS.gene00633

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00633.t1	RHN71500.1	87.5	321	32	4	1	316	1	318	1.30E-156	562.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00633.t1	Q84WU6	36.4	343	162	10	16	312	16	348	1.4e-48	194.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00633.t1	G7INQ9	87.5	321	32	4	1	316	1	318	9.7e-157	562.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00633.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00633.t1	MTR_2g006380	89.097	321	27	4	1	316	1	318	0.0	570
MS.gene00633.t1	MTR_2g006270	72.240	317	74	7	10	316	4	316	5.46e-156	444
MS.gene00633.t1	MTR_1g058210	48.447	322	141	10	12	316	5	318	5.32e-87	268
MS.gene00633.t1	MTR_2g024430	48.276	319	141	11	12	316	13	321	3.41e-83	260
MS.gene00633.t1	MTR_5g040880	43.849	317	161	8	10	316	2	311	7.51e-82	257
MS.gene00633.t1	MTR_5g061220	46.377	345	134	12	13	316	13	347	2.27e-81	256
MS.gene00633.t1	MTR_5g040740	46.395	319	150	10	11	316	4	314	2.49e-80	249
MS.gene00633.t1	MTR_5g060780	41.975	324	154	12	13	316	6	315	2.88e-72	229
MS.gene00633.t1	MTR_5g061890	42.284	324	153	12	13	316	6	315	2.09e-71	226
MS.gene00633.t1	MTR_5g460920	41.975	324	154	12	13	316	6	315	2.79e-71	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00633.t1	AT1G77850	36.337	344	163	10	15	312	15	348	1.09e-60	203
MS.gene00633.t1	AT1G77850	36.337	344	163	10	15	312	15	348	1.34e-60	203
MS.gene00633.t1	AT4G30080	34.174	357	170	10	16	316	16	363	1.82e-53	186
MS.gene00633.t1	AT2G28350	32.527	372	173	14	11	316	2	361	2.52e-48	171
MS.gene00633.t1	AT2G28350	32.527	372	173	14	11	316	2	361	3.52e-48	171
MS.gene00633.t1	AT4G23980	30.530	321	198	9	15	316	8	322	1.09e-38	144
MS.gene00633.t1	AT4G23980	30.530	321	198	9	15	316	8	322	1.09e-38	144
MS.gene00633.t1	AT2G33860	31.804	327	182	11	19	316	54	368	1.89e-36	138
MS.gene00633.t1	AT1G35540	31.790	324	187	12	14	316	22	332	5.72e-36	137
MS.gene00633.t1	AT1G34310	31.269	323	190	11	14	316	22	332	3.09e-35	134

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Find 87 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTGAAGATCATGAA+GGG	0.620045	2.1:+75662845	None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG	0.605720	2.1:-75662340	MS.gene00633:CDS
AAATCTCCATGCCAAGCGGA+GGG	0.609417	2.1:+75662574	None:intergenic
AACGACGATGATGAGGTAAT+TGG	0.328138	2.1:-75662678	MS.gene00633:CDS
AAGAGGAAGAAACTCGACGT+CGG	0.718798	2.1:-75662438	MS.gene00633:CDS
AAGGAGAAGCATATTCTAAG+TGG	0.626940	2.1:+75662892	None:intergenic
AAGGGAGTGAATGTAAGCAT+TGG	0.561164	2.1:+75662863	None:intergenic
AAGTTTCACCATGCCTGCCA+CGG	0.506565	2.1:-75662510	MS.gene00633:CDS
AATGGAGTTCGTTTGTTAAG+AGG	0.407313	2.1:-75662455	MS.gene00633:CDS
AATTATTTGTTGGGATTCGC+AGG	0.462606	2.1:-75662380	MS.gene00633:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACGTTGAAGATCATGAA+GGG	+	chr2.1:75662276-75662295	None:intergenic	30.0%
CAACGGGAAAATTATTTGTT+GGG	-	chr2.1:75662729-75662748	MS.gene00633:CDS	30.0%
GATATAAAACACGTTTCTCT+TGG	+	chr2.1:75662639-75662658	None:intergenic	30.0%
TAAACTCTTGAATGCAACTT+TGG	+	chr2.1:75662191-75662210	None:intergenic	30.0%
TATCTCGTACGTCTAATTTA+TGG	-	chr2.1:75663005-75663024	MS.gene00633:CDS	30.0%
TATGCTTGCTTACATTAGTA+GGG	+	chr2.1:75662487-75662506	None:intergenic	30.0%
TCAACGGGAAAATTATTTGT+TGG	-	chr2.1:75662728-75662747	MS.gene00633:CDS	30.0%
TCATCTTAACTCTCATTCTA+GGG	+	chr2.1:75662937-75662956	None:intergenic	30.0%
TGAAGACTGATAAATCTTCA+AGG	-	chr2.1:75662954-75662973	MS.gene00633:CDS	30.0%
TTCATCTTAACTCTCATTCT+AGG	+	chr2.1:75662938-75662957	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	75662095	75663045	75662095	ID=MS.gene00633
chr2.1	mRNA	75662095	75663045	75662095	ID=MS.gene00633.t1;Parent=MS.gene00633
chr2.1	exon	75662095	75663045	75662095	ID=MS.gene00633.t1.exon1;Parent=MS.gene00633.t1
chr2.1	CDS	75662095	75663045	75662095	ID=cds.MS.gene00633.t1;Parent=MS.gene00633.t1

Gene Sequence

>MS.gene00633

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTATAA

Protein sequence

>MS.gene00633.t1

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQV