AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006349

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006349.t1 MTR_1g101810 88.724 337 24 3 1 323 1 337 0.0 557
MS.gene006349.t1 MTR_1g101810 88.724 337 24 3 1 323 31 367 0.0 556
MS.gene006349.t1 MTR_8g033070 51.661 271 101 11 61 315 76 332 9.23e-73 228
MS.gene006349.t1 MTR_2g006150 58.475 118 45 1 39 152 101 218 9.79e-38 140
MS.gene006349.t1 MTR_2g006150 58.475 118 45 1 39 152 101 218 1.04e-37 140
MS.gene006349.t1 MTR_7g028160 71.765 85 24 0 57 141 43 127 1.80e-36 132
MS.gene006349.t1 MTR_4g108370 54.264 129 48 3 14 131 36 164 3.95e-34 130
MS.gene006349.t1 MTR_5g039600 67.059 85 28 0 61 145 64 148 2.91e-33 127
MS.gene006349.t1 MTR_1g063870 82.090 67 12 0 60 126 45 111 9.30e-33 120
MS.gene006349.t1 MTR_1g038650 71.053 76 22 0 51 126 19 94 1.79e-31 118
MS.gene006349.t1 MTR_1g114380 68.750 80 25 0 57 136 26 105 3.81e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006349.t1 AT5G51910 49.533 321 108 12 1 309 1 279 1.24e-76 237
MS.gene006349.t1 AT5G51910 49.533 321 108 12 1 309 1 279 1.24e-76 237
MS.gene006349.t1 AT2G45680 50.890 281 110 8 61 314 72 351 1.33e-67 216
MS.gene006349.t1 AT1G58100 71.264 87 18 2 61 140 57 143 3.16e-34 129
MS.gene006349.t1 AT3G27010 59.322 118 33 4 10 125 35 139 1.59e-33 125
MS.gene006349.t1 AT3G27010 59.322 118 33 4 10 125 35 139 1.59e-33 125
MS.gene006349.t1 AT1G69690 77.465 71 16 0 61 131 49 119 1.87e-33 125
MS.gene006349.t1 AT1G72010 69.620 79 24 0 58 136 57 135 3.94e-33 126
MS.gene006349.t1 AT3G47620 63.918 97 20 2 36 126 92 179 1.30e-32 126
MS.gene006349.t1 AT1G35560 68.966 87 20 2 61 140 52 138 5.74e-32 122
MS.gene006349.t1 AT5G23280 65.909 88 27 1 39 126 17 101 1.81e-31 119
MS.gene006349.t1 AT5G08330 78.261 69 15 0 58 126 25 93 4.59e-31 117
MS.gene006349.t1 AT5G41030 60.256 78 31 0 52 129 56 133 7.69e-28 108
MS.gene006349.t1 AT2G37000 76.667 60 14 0 64 123 43 102 1.27e-25 101
MS.gene006349.t1 AT3G45150 60.317 63 25 0 60 122 13 75 1.83e-21 89.7
MS.gene006349.t1 AT1G58100 86.111 36 5 0 61 96 57 92 1.12e-14 74.3

Find 102 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCATTAAACTTGAATT+TGG 0.121922 1.1:-73236258 None:intergenic
TAAGAAAGAGTTGCAGTTTA+TGG 0.151782 1.1:+73236494 MS.gene006349:CDS
GGGTTGTTCTTCTGCAAATT+TGG 0.196594 1.1:+73236515 MS.gene006349:CDS
CCGTATGCGGTTTGAGCAAT+TGG 0.261841 1.1:-73236120 None:intergenic
TTTGAACCGGCATCGGAATA+AGG 0.270424 1.1:-73235726 None:intergenic
GATCAAGTTTCAATGTGTTC+TGG 0.294475 1.1:+73236090 MS.gene006349:CDS
GGCGGCGGTGGTGGTGAAAA+TGG 0.305547 1.1:+73236159 MS.gene006349:CDS
TAATGAATCAGCCACAGTTT+TGG 0.305680 1.1:+73236271 MS.gene006349:CDS
CCTCGTCAGTTGAAAGATTC+TGG 0.326356 1.1:-73235845 None:intergenic
AAGAAAGAGTTGCAGTTTAT+GGG 0.351004 1.1:+73236495 MS.gene006349:CDS
AGGGACGTGGTCGGAGAATC+AGG 0.360591 1.1:+73235803 MS.gene006349:CDS
GATTCATTAAACTTGAATTT+GGG 0.361250 1.1:-73236257 None:intergenic
CGTATGCGGTTTGAGCAATT+GGG 0.365708 1.1:-73236119 None:intergenic
GCAGAAACAAAATCAGAAAT+AGG 0.368459 1.1:-73236333 None:intergenic
CTTCAAATACTCAGATGATA+AGG 0.371896 1.1:+73236448 MS.gene006349:CDS
AACTTAAAGCTTCAATTTGA+AGG 0.378942 1.1:-73236558 None:intergenic
TTCAAATACTCAGATGATAA+GGG 0.380031 1.1:+73236449 MS.gene006349:CDS
TTCAAATGCTTCATCTACTT+TGG 0.380509 1.1:+73236377 MS.gene006349:CDS
ACCTCCGGTGGCGGCGGTGG+TGG 0.384186 1.1:+73236150 MS.gene006349:CDS
CAGAAAACATCGCCGCCGTT+AGG 0.396092 1.1:-73235601 None:intergenic
GTGGTGGTTTAGTTCCATTA+TGG 0.415083 1.1:+73236181 MS.gene006349:CDS
ACCACCTCCGGTGGCGGCGG+TGG 0.420445 1.1:+73236147 MS.gene006349:CDS
GACAACGGAGCCTGCGGCGG+CGG 0.427457 1.1:+73235666 MS.gene006349:CDS
TTACTTACAACAGGCCATAA+TGG 0.429653 1.1:-73236195 None:intergenic
TGGTCGGAGAATCAGGATTC+CGG 0.442503 1.1:+73235810 MS.gene006349:CDS
ACCACCGCCGCCACCGGAGG+TGG 0.448519 1.1:-73236148 None:intergenic
ATTCTGGCGGCGCATGTCGC+CGG 0.450483 1.1:-73235829 None:intergenic
AAAGTAGATGAAGCATTTGA+AGG 0.463468 1.1:-73236375 None:intergenic
GCCACTGTCATCGTTTGAAC+CGG 0.470202 1.1:-73235739 None:intergenic
ATCATCGAAGCTACCGGCAC+TGG 0.470702 1.1:+73235931 MS.gene006349:CDS
AACATCATCTCCGGCGAGAC+CGG 0.479647 1.1:+73236002 MS.gene006349:CDS
AGAAAACATCGCCGCCGTTA+GGG 0.488008 1.1:-73235600 None:intergenic
ACCGCCGCCACCGGAGGTGG+TGG 0.490467 1.1:-73236145 None:intergenic
GGTGCCACCACCTCCGGTGG+CGG 0.492237 1.1:+73236141 MS.gene006349:CDS
CTGTTGTAAGTAACGGTGTT+GGG 0.497781 1.1:+73236205 MS.gene006349:CDS
GCATACGGTGCCACCACCTC+CGG 0.499218 1.1:+73236135 MS.gene006349:CDS
CATCTGAGTATTTGAAGAAG+TGG 0.499530 1.1:-73236442 None:intergenic
TCTTTCATTACCGCCGCCGC+AGG 0.501320 1.1:-73235676 None:intergenic
CCAACACCGTTACTTACAAC+AGG 0.501497 1.1:-73236204 None:intergenic
GCCACCACCTCCGGTGGCGG+CGG 0.501891 1.1:+73236144 MS.gene006349:CDS
GGTGTTGGGTCTAATACAAC+AGG 0.506356 1.1:+73236219 MS.gene006349:CDS
ACCGGACGGTGAAGATGCTC+CGG 0.509905 1.1:+73236020 MS.gene006349:CDS
GAAAGAAGAGCTAACGGAAA+CGG 0.511043 1.1:+73235693 MS.gene006349:CDS
TTCACCACCACCGCCGCCAC+CGG 0.512971 1.1:-73236154 None:intergenic
TTTCAACTGACGAGGGAGCT+AGG 0.517084 1.1:+73235853 MS.gene006349:CDS
GTCCCTCCACCTTCGTGTGA+CGG 0.518085 1.1:-73235786 None:intergenic
ACCGGAGCATCTTCACCGTC+CGG 0.521868 1.1:-73236021 None:intergenic
CCGGTAGCTTCGATGATAGA+AGG 0.522884 1.1:-73235925 None:intergenic
CCAATTGCTCAAACCGCATA+CGG 0.529239 1.1:+73236120 MS.gene006349:CDS
CAGCTTGTTCTAGTAACCAC+CGG 0.530941 1.1:-73235900 None:intergenic
CCTTCTATCATCGAAGCTAC+CGG 0.531231 1.1:+73235925 MS.gene006349:CDS
GTCATCGTTTGAACCGGCAT+CGG 0.531689 1.1:-73235733 None:intergenic
CAATTTGAAGGATTTGAAGA+GGG 0.533413 1.1:-73236546 None:intergenic
CAACAGCCTTATTCCGATGC+CGG 0.533446 1.1:+73235720 MS.gene006349:CDS
GGCCGGCACAGTTCCAGTGC+CGG 0.539294 1.1:-73235944 None:intergenic
GAAGCATTTGAAGGTTCTTG+TGG 0.545348 1.1:-73236366 None:intergenic
CACACGAAGGTGGAGGGACG+TGG 0.552204 1.1:+73235790 MS.gene006349:CDS
GAAGATTCCAACATCATCTC+CGG 0.553576 1.1:+73235993 MS.gene006349:CDS
AGTATCTCCGTCGGAGACAA+CGG 0.553999 1.1:+73235651 MS.gene006349:CDS
AGACCGTCACACGAAGGTGG+AGG 0.559373 1.1:+73235783 MS.gene006349:CDS
CCGGCCATCGCTGTTTCCGT+CGG 0.560469 1.1:+73235961 MS.gene006349:CDS
GCCATCGCTGTTTCCGTCGG+AGG 0.562359 1.1:+73235964 MS.gene006349:CDS
ACCACCACCGCCGCCACCGG+AGG 0.563360 1.1:-73236151 None:intergenic
CCACCGGATTGTTTCTCCGT+CGG 0.564902 1.1:-73235884 None:intergenic
TCAATTTGAAGGATTTGAAG+AGG 0.565283 1.1:-73236547 None:intergenic
CCGACGGAAACAGCGATGGC+CGG 0.568312 1.1:-73235961 None:intergenic
CCAGAATCTTTCAACTGACG+AGG 0.568890 1.1:+73235845 MS.gene006349:CDS
CCTGTTGTAAGTAACGGTGT+TGG 0.571104 1.1:+73236204 MS.gene006349:CDS
TCAAACGATGACAGTGGCGG+CGG 0.571801 1.1:+73235744 MS.gene006349:CDS
GCAGGCTCCGTTGTCTCCGA+CGG 0.573037 1.1:-73235658 None:intergenic
TCTTCACCGTCCGGTCTCGC+CGG 0.573077 1.1:-73236012 None:intergenic
GAAGTTGCTGAACTCAAACT+AGG 0.587727 1.1:-73236402 None:intergenic
TACCGGCACTGGAACTGTGC+CGG 0.588215 1.1:+73235942 MS.gene006349:CDS
AATCCGACGGAGAAACAATC+CGG 0.589954 1.1:+73235881 MS.gene006349:CDS
GGAGGTGGTGGCACCGTATG+CGG 0.590501 1.1:-73236133 None:intergenic
GGAGACAACGGAGCCTGCGG+CGG 0.591612 1.1:+73235663 MS.gene006349:CDS
GTCGGAGACAACGGAGCCTG+CGG 0.596750 1.1:+73235660 MS.gene006349:CDS
TTATGGCCTGTTGTAAGTAA+CGG 0.597870 1.1:+73236198 MS.gene006349:CDS
GGTCTCGCCGGAGATGATGT+TGG 0.599874 1.1:-73236000 None:intergenic
TGACAGTGGCGGCGGCGAAG+AGG 0.607175 1.1:+73235752 MS.gene006349:CDS
GGTGGTGGTGAAAATGGTGG+TGG 0.608962 1.1:+73236165 MS.gene006349:CDS
GACCGTCACACGAAGGTGGA+GGG 0.613473 1.1:+73235784 MS.gene006349:CDS
TACGGTGCCACCACCTCCGG+TGG 0.613749 1.1:+73236138 MS.gene006349:CDS
ACCTCCGACGGAAACAGCGA+TGG 0.615156 1.1:-73235965 None:intergenic
CGAAGGTGGAGGGACGTGGT+CGG 0.617193 1.1:+73235794 MS.gene006349:CDS
TCATCTCCGGCGAGACCGGA+CGG 0.619808 1.1:+73236006 MS.gene006349:CDS
GTATGCGGTTTGAGCAATTG+GGG 0.623066 1.1:-73236118 None:intergenic
GGCGGTGGTGGTGAAAATGG+TGG 0.629936 1.1:+73236162 MS.gene006349:CDS
GAAAGACCGTCACACGAAGG+TGG 0.637908 1.1:+73235780 MS.gene006349:CDS
CAATACTGAAGTATCTCCGT+CGG 0.638733 1.1:+73235642 MS.gene006349:CDS
AGGATGGAAGTGAACCCTAA+CGG 0.640403 1.1:+73235586 None:intergenic
CAGAATCTTTCAACTGACGA+GGG 0.645062 1.1:+73235846 MS.gene006349:CDS
GGTAATGAAAGAAGAGCTAA+CGG 0.657643 1.1:+73235687 MS.gene006349:CDS
GAGCTAGGTCACAAATCCGA+CGG 0.657749 1.1:+73235868 MS.gene006349:CDS
AATCTTCAACGTACCTCCGA+CGG 0.665588 1.1:-73235977 None:intergenic
GGTTCAAACGATGACAGTGG+CGG 0.668294 1.1:+73235741 MS.gene006349:CDS
CGTCAGTTGAAAGATTCTGG+CGG 0.698563 1.1:-73235842 None:intergenic
GTCGAAAGACCGTCACACGA+AGG 0.707956 1.1:+73235777 MS.gene006349:CDS
GCCGGTTCAAACGATGACAG+TGG 0.712883 1.1:+73235738 MS.gene006349:CDS
GCAGGAATAGCCCAAAACTG+TGG 0.725268 1.1:-73236282 None:intergenic
CCGACGGAGAAACAATCCGG+TGG 0.744089 1.1:+73235884 MS.gene006349:CDS
ATGGAAGTGAACCCTAACGG+CGG 0.769753 1.1:+73235589 MS.gene006349:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTCATTAAACTTGAATTT+GGG - chr1.1:73236260-73236279 None:intergenic 20.0%
!! TGATTCATTAAACTTGAATT+TGG - chr1.1:73236261-73236280 None:intergenic 20.0%
! CTTGTTTGCACATTAAAAAA+TGG - chr1.1:73236312-73236331 None:intergenic 25.0%
! TTCAAATACTCAGATGATAA+GGG + chr1.1:73236449-73236468 MS.gene006349:CDS 25.0%
AAGAAAGAGTTGCAGTTTAT+GGG + chr1.1:73236495-73236514 MS.gene006349:CDS 30.0%
CAATTTGAAGGATTTGAAGA+GGG - chr1.1:73236549-73236568 None:intergenic 30.0%
CTTCAAATACTCAGATGATA+AGG + chr1.1:73236448-73236467 MS.gene006349:CDS 30.0%
GAATTTGGGAACATGAAAAA+TGG - chr1.1:73236246-73236265 None:intergenic 30.0%
GCAGAAACAAAATCAGAAAT+AGG - chr1.1:73236336-73236355 None:intergenic 30.0%
TAAGAAAGAGTTGCAGTTTA+TGG + chr1.1:73236494-73236513 MS.gene006349:CDS 30.0%
TCAATTTGAAGGATTTGAAG+AGG - chr1.1:73236550-73236569 None:intergenic 30.0%
TTCAAATGCTTCATCTACTT+TGG + chr1.1:73236377-73236396 MS.gene006349:CDS 30.0%
! AAAGTAGATGAAGCATTTGA+AGG - chr1.1:73236378-73236397 None:intergenic 30.0%
! GATGATAAGGGATTTTTCTT+TGG + chr1.1:73236461-73236480 MS.gene006349:CDS 30.0%
CATCTGAGTATTTGAAGAAG+TGG - chr1.1:73236445-73236464 None:intergenic 35.0%
GATCAAGTTTCAATGTGTTC+TGG + chr1.1:73236090-73236109 MS.gene006349:CDS 35.0%
GGTAATGAAAGAAGAGCTAA+CGG + chr1.1:73235687-73235706 MS.gene006349:CDS 35.0%
TTACTTACAACAGGCCATAA+TGG - chr1.1:73236198-73236217 None:intergenic 35.0%
TTATGGCCTGTTGTAAGTAA+CGG + chr1.1:73236198-73236217 MS.gene006349:CDS 35.0%
! AATGAATCAGCCACAGTTTT+GGG + chr1.1:73236272-73236291 MS.gene006349:CDS 35.0%
! TAATGAATCAGCCACAGTTT+TGG + chr1.1:73236271-73236290 MS.gene006349:CDS 35.0%
!! ACATTAAAAAATGGTGCTGC+AGG - chr1.1:73236303-73236322 None:intergenic 35.0%
CAGAATCTTTCAACTGACGA+GGG + chr1.1:73235846-73235865 MS.gene006349:CDS 40.0%
CTGTTGTAAGTAACGGTGTT+GGG + chr1.1:73236205-73236224 MS.gene006349:CDS 40.0%
GAAAGAAGAGCTAACGGAAA+CGG + chr1.1:73235693-73235712 MS.gene006349:CDS 40.0%
GAAGATTCCAACATCATCTC+CGG + chr1.1:73235993-73236012 MS.gene006349:CDS 40.0%
GAAGTTGCTGAACTCAAACT+AGG - chr1.1:73236405-73236424 None:intergenic 40.0%
GGGTTGTTCTTCTGCAAATT+TGG + chr1.1:73236515-73236534 MS.gene006349:CDS 40.0%
! CAATACTGAAGTATCTCCGT+CGG + chr1.1:73235642-73235661 MS.gene006349:CDS 40.0%
! GAAGCATTTGAAGGTTCTTG+TGG - chr1.1:73236369-73236388 None:intergenic 40.0%
! GCTCTTCTTCTTCTTTTCAC+CGG - chr1.1:73236042-73236061 None:intergenic 40.0%
! GTGGTGGTTTAGTTCCATTA+TGG + chr1.1:73236181-73236200 MS.gene006349:CDS 40.0%
AATCCGACGGAGAAACAATC+CGG + chr1.1:73235881-73235900 MS.gene006349:CDS 45.0%
AATCTTCAACGTACCTCCGA+CGG - chr1.1:73235980-73235999 None:intergenic 45.0%
CCAACACCGTTACTTACAAC+AGG - chr1.1:73236207-73236226 None:intergenic 45.0%
CCAATTGCTCAAACCGCATA+CGG + chr1.1:73236120-73236139 MS.gene006349:CDS 45.0%
CCAGAATCTTTCAACTGACG+AGG + chr1.1:73235845-73235864 MS.gene006349:CDS 45.0%
CCTCGTCAGTTGAAAGATTC+TGG - chr1.1:73235848-73235867 None:intergenic 45.0%
CCTGTTGTAAGTAACGGTGT+TGG + chr1.1:73236204-73236223 MS.gene006349:CDS 45.0%
CCTTCTATCATCGAAGCTAC+CGG + chr1.1:73235925-73235944 MS.gene006349:CDS 45.0%
CGTATGCGGTTTGAGCAATT+GGG - chr1.1:73236122-73236141 None:intergenic 45.0%
CGTCAGTTGAAAGATTCTGG+CGG - chr1.1:73235845-73235864 None:intergenic 45.0%
GTATGCGGTTTGAGCAATTG+GGG - chr1.1:73236121-73236140 None:intergenic 45.0%
! CAGCTTGTTCTAGTAACCAC+CGG - chr1.1:73235903-73235922 None:intergenic 45.0%
! GGTGTTGGGTCTAATACAAC+AGG + chr1.1:73236219-73236238 MS.gene006349:CDS 45.0%
! TTTGAACCGGCATCGGAATA+AGG - chr1.1:73235729-73235748 None:intergenic 45.0%
AGAAAACATCGCCGCCGTTA+GGG - chr1.1:73235603-73235622 None:intergenic 50.0%
AGTATCTCCGTCGGAGACAA+CGG + chr1.1:73235651-73235670 MS.gene006349:CDS 50.0%
ATGGAAGTGAACCCTAACGG+CGG + chr1.1:73235589-73235608 MS.gene006349:CDS 50.0%
CCGGTAGCTTCGATGATAGA+AGG - chr1.1:73235928-73235947 None:intergenic 50.0%
CCGTATGCGGTTTGAGCAAT+TGG - chr1.1:73236123-73236142 None:intergenic 50.0%
GAGCTAGGTCACAAATCCGA+CGG + chr1.1:73235868-73235887 MS.gene006349:CDS 50.0%
GCAGGAATAGCCCAAAACTG+TGG - chr1.1:73236285-73236304 None:intergenic 50.0%
GCCACTGTCATCGTTTGAAC+CGG - chr1.1:73235742-73235761 None:intergenic 50.0%
GGTTCAAACGATGACAGTGG+CGG + chr1.1:73235741-73235760 MS.gene006349:CDS 50.0%
GTCATCGTTTGAACCGGCAT+CGG - chr1.1:73235736-73235755 None:intergenic 50.0%
TGGTCGGAGAATCAGGATTC+CGG + chr1.1:73235810-73235829 MS.gene006349:CDS 50.0%
TTTCAACTGACGAGGGAGCT+AGG + chr1.1:73235853-73235872 MS.gene006349:CDS 50.0%
!! CAACAGCCTTATTCCGATGC+CGG + chr1.1:73235720-73235739 MS.gene006349:CDS 50.0%
AACATCATCTCCGGCGAGAC+CGG + chr1.1:73236002-73236021 MS.gene006349:CDS 55.0%
ATCATCGAAGCTACCGGCAC+TGG + chr1.1:73235931-73235950 MS.gene006349:CDS 55.0%
CAGAAAACATCGCCGCCGTT+AGG - chr1.1:73235604-73235623 None:intergenic 55.0%
GAAAGACCGTCACACGAAGG+TGG + chr1.1:73235780-73235799 MS.gene006349:CDS 55.0%
GTCGAAAGACCGTCACACGA+AGG + chr1.1:73235777-73235796 MS.gene006349:CDS 55.0%
TCAAACGATGACAGTGGCGG+CGG + chr1.1:73235744-73235763 MS.gene006349:CDS 55.0%
! CCACCGGATTGTTTCTCCGT+CGG - chr1.1:73235887-73235906 None:intergenic 55.0%
! GCCGGTTCAAACGATGACAG+TGG + chr1.1:73235738-73235757 MS.gene006349:CDS 55.0%
! GGTGGTGGTGAAAATGGTGG+TGG + chr1.1:73236165-73236184 MS.gene006349:CDS 55.0%
ACCGGACGGTGAAGATGCTC+CGG + chr1.1:73236020-73236039 MS.gene006349:CDS 60.0%
ACCTCCGACGGAAACAGCGA+TGG - chr1.1:73235968-73235987 None:intergenic 60.0%
AGACCGTCACACGAAGGTGG+AGG + chr1.1:73235783-73235802 MS.gene006349:CDS 60.0%
AGGGACGTGGTCGGAGAATC+AGG + chr1.1:73235803-73235822 MS.gene006349:CDS 60.0%
CCGACGGAGAAACAATCCGG+TGG + chr1.1:73235884-73235903 MS.gene006349:CDS 60.0%
GACCGTCACACGAAGGTGGA+GGG + chr1.1:73235784-73235803 MS.gene006349:CDS 60.0%
GGTCTCGCCGGAGATGATGT+TGG - chr1.1:73236003-73236022 None:intergenic 60.0%
GTCCCTCCACCTTCGTGTGA+CGG - chr1.1:73235789-73235808 None:intergenic 60.0%
TCTTTCATTACCGCCGCCGC+AGG - chr1.1:73235679-73235698 None:intergenic 60.0%
! ACCGGAGCATCTTCACCGTC+CGG - chr1.1:73236024-73236043 None:intergenic 60.0%
! GGCGGTGGTGGTGAAAATGG+TGG + chr1.1:73236162-73236181 MS.gene006349:CDS 60.0%
! TACCGGCACTGGAACTGTGC+CGG + chr1.1:73235942-73235961 MS.gene006349:CDS 60.0%
ATTCTGGCGGCGCATGTCGC+CGG - chr1.1:73235832-73235851 None:intergenic 65.0%
CACACGAAGGTGGAGGGACG+TGG + chr1.1:73235790-73235809 MS.gene006349:CDS 65.0%
CCGACGGAAACAGCGATGGC+CGG - chr1.1:73235964-73235983 None:intergenic 65.0%
CGAAGGTGGAGGGACGTGGT+CGG + chr1.1:73235794-73235813 MS.gene006349:CDS 65.0%
GCAGGCTCCGTTGTCTCCGA+CGG - chr1.1:73235661-73235680 None:intergenic 65.0%
GTCGGAGACAACGGAGCCTG+CGG + chr1.1:73235660-73235679 MS.gene006349:CDS 65.0%
TCATCTCCGGCGAGACCGGA+CGG + chr1.1:73236006-73236025 MS.gene006349:CDS 65.0%
TCTTCACCGTCCGGTCTCGC+CGG - chr1.1:73236015-73236034 None:intergenic 65.0%
! CCGGCCATCGCTGTTTCCGT+CGG + chr1.1:73235961-73235980 MS.gene006349:CDS 65.0%
! GCCATCGCTGTTTCCGTCGG+AGG + chr1.1:73235964-73235983 MS.gene006349:CDS 65.0%
! GGAGGTGGTGGCACCGTATG+CGG - chr1.1:73236136-73236155 None:intergenic 65.0%
! GGCGGCGGTGGTGGTGAAAA+TGG + chr1.1:73236159-73236178 MS.gene006349:CDS 65.0%
!! GCATACGGTGCCACCACCTC+CGG + chr1.1:73236135-73236154 MS.gene006349:CDS 65.0%
GGAGACAACGGAGCCTGCGG+CGG + chr1.1:73235663-73235682 MS.gene006349:CDS 70.0%
GGCCGGCACAGTTCCAGTGC+CGG - chr1.1:73235947-73235966 None:intergenic 70.0%
TGACAGTGGCGGCGGCGAAG+AGG + chr1.1:73235752-73235771 MS.gene006349:CDS 70.0%
TTCACCACCACCGCCGCCAC+CGG - chr1.1:73236157-73236176 None:intergenic 70.0%
!! TACGGTGCCACCACCTCCGG+TGG + chr1.1:73236138-73236157 MS.gene006349:CDS 70.0%
GACAACGGAGCCTGCGGCGG+CGG + chr1.1:73235666-73235685 MS.gene006349:CDS 75.0%
! GGTGCCACCACCTCCGGTGG+CGG + chr1.1:73236141-73236160 MS.gene006349:CDS 75.0%
! ACCACCACCGCCGCCACCGG+AGG - chr1.1:73236154-73236173 None:intergenic 80.0%
! ACCACCGCCGCCACCGGAGG+TGG - chr1.1:73236151-73236170 None:intergenic 80.0%
! ACCGCCGCCACCGGAGGTGG+TGG - chr1.1:73236148-73236167 None:intergenic 80.0%
!! ACCACCTCCGGTGGCGGCGG+TGG + chr1.1:73236147-73236166 MS.gene006349:CDS 80.0%
!! ACCTCCGGTGGCGGCGGTGG+TGG + chr1.1:73236150-73236169 MS.gene006349:CDS 80.0%
!! GCCACCACCTCCGGTGGCGG+CGG + chr1.1:73236144-73236163 MS.gene006349:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 73235589 73236569 73235589 ID=MS.gene006349
chr1.1 mRNA 73235589 73236569 73235589 ID=MS.gene006349.t1;Parent=MS.gene006349
chr1.1 exon 73235589 73236569 73235589 ID=MS.gene006349.t1.exon1;Parent=MS.gene006349.t1
chr1.1 CDS 73235589 73236569 73235589 ID=cds.MS.gene006349.t1;Parent=MS.gene006349.t1
Gene Sequence

>MS.gene006349

ATGGAAGTGAACCCTAACGGCGGCGATGTTTTCTGTGAAGAAAACAACACTGACAATACTGAAGTATCTCCGTCGGAGACAACGGAGCCTGCGGCGGCGGTAATGAAAGAAGAGCTAACGGAAACGGAAAACAACAGCCTTATTCCGATGCCGGTTCAAACGATGACAGTGGCGGCGGCGAAGAGGTCGTCGAAAGACCGTCACACGAAGGTGGAGGGACGTGGTCGGAGAATCAGGATTCCGGCGACATGCGCCGCCAGAATCTTTCAACTGACGAGGGAGCTAGGTCACAAATCCGACGGAGAAACAATCCGGTGGTTACTAGAACAAGCTGAACCTTCTATCATCGAAGCTACCGGCACTGGAACTGTGCCGGCCATCGCTGTTTCCGTCGGAGGTACGTTGAAGATTCCAACATCATCTCCGGCGAGACCGGACGGTGAAGATGCTCCGGTGAAAAGAAGAAGAAGAGCTTCAAACAGTGAGTTTGTTGACTTGAATGATCAAGTTTCAATGTGTTCTGGATTAGCCCCAATTGCTCAAACCGCATACGGTGCCACCACCTCCGGTGGCGGCGGTGGTGGTGAAAATGGTGGTGGTTTAGTTCCATTATGGCCTGTTGTAAGTAACGGTGTTGGGTCTAATACAACAGGACCATTTTTCATGTTCCCAAATTCAAGTTTAATGAATCAGCCACAGTTTTGGGCTATTCCTGCAGCACCATTTTTTAATGTGCAAACAAGACCTATTTCTGATTTTGTTTCTGCTATGCAAATGCCACAAGAACCTTCAAATGCTTCATCTACTTTGGCTCCTAGTTTGAGTTCAGCAACTTCAACTAGTTGTTCTGCTACCACTTCTTCAAATACTCAGATGATAAGGGATTTTTCTTTGGATATCTTTGATAAGAAAGAGTTGCAGTTTATGGGTTGTTCTTCTGCAAATTTGGAATCATCTCCCTCTTCAAATCCTTCAAATTGA
Protein sequence

>MS.gene006349.t1

MEVNPNGGDVFCEENNTDNTEVSPSETTEPAAAVMKEELTETENNSLIPMPVQTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPARPDGEDAPVKRRRRASNSEFVDLNDQVSMCSGLAPIAQTAYGATTSGGGGGGENGGGLVPLWPVVSNGVGSNTTGPFFMFPNSSLMNQPQFWAIPAAPFFNVQTRPISDFVSAMQMPQEPSNASSTLAPSLSSATSTSCSATTSSNTQMIRDFSLDIFDKKELQFMGCSSANLESSPSSNPSN