AlfalfaGEDB | MS.gene006380

M. sativa cultivar XinJiangDaYe / MS.gene006380

KEGG: K15153
GO: GO:0003674 GO:0003712 GO:0005575 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF05669.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006380.t1	XP_013469726.1	94.6	204	11	0	1	204	54	257	1.10E-79	306.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006380.t1	Q8VYB1	85.3	129	19	0	1	129	1	129	1.7e-60	233.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006380.t1	A0A072VP09	94.6	204	11	0	1	204	54	257	8.1e-80	306.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene006380.t1	TR	SOH1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006380.t1	MTR_1g102540	97.059	204	6	0	1	204	54	257	9.42e-148	411
MS.gene006380.t1	MTR_1g102540	96.791	187	6	0	18	204	12	198	9.00e-135	375

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006380.t1	AT5G19910	70.531	207	44	4	1	204	1	193	4.08e-89	260
MS.gene006380.t1	AT5G19910	61.603	237	44	5	1	204	1	223	1.67e-82	244

Showing 1 to 2 of 2 entries

Previous1Next

Find 51 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGTTGTCGCCCATCATC+TGG	0.352900	1.3:-70419375	None:intergenic
AATGGCACATCCTACCAATA+AGG	0.389767	1.3:+70420655	MS.gene006380:CDS
AATTATACTTACGGTGATGG+TGG	0.525463	1.3:-70417711	None:intergenic
ACACTTGTAGCAGGTACTGG+TGG	0.693490	1.3:-70421238	None:intergenic
ACCATACAGTGGATGTAGGT+AGG	0.594759	1.3:-70419435	None:intergenic
ACTGGTGGTAGTGCATGCAC+AGG	0.653824	1.3:-70421223	None:intergenic
ACTTAAAGTATCTTCAATAT+TGG	0.293258	1.3:+70420302	MS.gene006380:CDS
AGGTGGCTGGGGTTGAGTCG+AGG	0.574599	1.3:-70421203	None:intergenic
AGTGCATGCACAGGTGGCTG+GGG	0.456575	1.3:-70421214	None:intergenic
ATACCGTATGGCATTGGAGA+AGG	0.568373	1.3:-70421289	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTGTTAGTGGTTGTG+AGG	+	chr1.3:70418402-70418421	MS.gene006380:intron	30.0%
AAAGAAGAAAGACGTATCAA+GGG	+	chr1.3:70417949-70417968	MS.gene006380:intron	30.0%
AACAATAGTCTATCGTAGAA+GGG	+	chr1.3:70417826-70417845	MS.gene006380:intron	30.0%
ACAAAGGTCGATCATAAAAA+AGG	-	chr1.3:70418993-70419012	None:intergenic	30.0%
ACCAAAAATTTCTCTGTTGT+AGG	+	chr1.3:70421069-70421088	MS.gene006380:intron	30.0%
ATGTAATGTCTGTCACTAAT+AGG	+	chr1.3:70420948-70420967	MS.gene006380:intron	30.0%
ATTTCCATATAGTTAAAGGC+GGG	+	chr1.3:70418356-70418375	MS.gene006380:intron	30.0%
CAAGGAATAAGTTGTGAAAA+AGG	+	chr1.3:70419568-70419587	MS.gene006380:intron	30.0%
CATTTCCATATAGTTAAAGG+CGG	+	chr1.3:70418355-70418374	MS.gene006380:intron	30.0%
CTATTGTTAATAGCTTCTGT+TGG	+	chr1.3:70418136-70418155	MS.gene006380:intron	30.0%

Showing 1 to 10 of 293 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	70417672	70421381	70417672	ID=MS.gene006380
chr1.3	mRNA	70417672	70421381	70417672	ID=MS.gene006380.t1;Parent=MS.gene006380
chr1.3	exon	70417672	70417721	70417672	ID=MS.gene006380.t1.exon1;Parent=MS.gene006380.t1
chr1.3	CDS	70417672	70417721	70417672	ID=cds.MS.gene006380.t1;Parent=MS.gene006380.t1
chr1.3	exon	70419353	70419450	70419353	ID=MS.gene006380.t1.exon2;Parent=MS.gene006380.t1
chr1.3	CDS	70419353	70419450	70419353	ID=cds.MS.gene006380.t1;Parent=MS.gene006380.t1
chr1.3	exon	70420257	70420353	70420257	ID=MS.gene006380.t1.exon3;Parent=MS.gene006380.t1
chr1.3	CDS	70420257	70420353	70420257	ID=cds.MS.gene006380.t1;Parent=MS.gene006380.t1
chr1.3	exon	70420598	70420676	70420598	ID=MS.gene006380.t1.exon4;Parent=MS.gene006380.t1
chr1.3	CDS	70420598	70420676	70420598	ID=cds.MS.gene006380.t1;Parent=MS.gene006380.t1
chr1.3	exon	70421091	70421381	70421091	ID=MS.gene006380.t1.exon5;Parent=MS.gene006380.t1
chr1.3	CDS	70421091	70421381	70421091	ID=cds.MS.gene006380.t1;Parent=MS.gene006380.t1

Gene Sequence

>MS.gene006380

ATGGCCTCTAAAACTGAAAGCGGGAGTCCAAGAGATACCCCACCATCACCGTAAGTATAATTGTAATCTTTTTTAATTTCAATGCCTTTTGCATATCACATTATCATGGCCACATTTTTTTTAAGGTTGTGTTTAATATTGATAGGCCCAACACAACAATAGTCTATCGTAGAAGGGGAGCAAAGGGGAAAAGTAAGCAAGGGGTTGGGTCTACTATCTCAACCCAACCCGAGGACAATAAGGGGACAAATAGAGTAGGCCTCCAAGTTTATACAAGAAAGAAGAAAGACGTATCAAGGGGAACAACAAAAGTTGTTGTGGGAGAAAACACAGTTAGAGGAGGAATAACAGAAGGGACAAATGGCAATGGGAGAGTGTAGTGTTAGAGATAGTGTATGGACTGGGCCTTGAGCCCAGCCTCTGTATGTTAGGTGTTACAGCTGTCTGTTGACAGCTGAATTTCTCTATTGTTAATAGCTTCTGTTGGAAGCTTCTAGTTAGTTAGAGTCAGTAGCTTGTTCTACAGGCTTCAAGTTAGCTAGAGTTTGTTACACTATGTATCTGTAATAAATAAAAAAGTAGTATAATTGTTATCATTCAACCAATTATAATGAATTCTGAAAATCAAACTTTCTCTCATTTTCTTGTATTCTATCTTTCTAACATGGAGAGAGATATGGAATCATTTCCATATAGTTAAAGGCGGGGGGTCAGAAAGTGGACATGTTAGAAAAATTGTTAGTGGTTGTGAGGCTTAACCTTTGTGATGAATGTTTTCCCTTCCTCTGTGACTCCCCACTCATTAGTCATGATCAACCCTTGTATGACAAGCCACGGCTGCTCTCACTGCAAGCATTAGAGTGTCCATCATTAGCCTCTTTTCCTGTCAATTACCTTCCTGTTTCGTCCATTTGTTTCTAAGGCTTCCCTTCCTGTAGATTTCATACTCTCCCAAGATTGGGAGCTTTGATACAAATTTGATAAAACAGAGATTGGTAAGCCTAAAAAATTAAAGGTGAGAGCTAAACAGGAAAGGTGGAATGACGGTAAAAAAAATGTAGAAACGAGTGCCAACAAGTGCTGCACAATAGATAGAGCTGATTCTTTATTGCTCCACTCCCCAATTGGCATATGTCCCTTCTGTCATTCCTCCTCTAACTGTTTTATCCGTCTCTGATTTTTTATTTTTGTTGTTCCCCTTGATACATCGTTCATCCTTCTTGTACAAAACTTTGAGACTCAGTCTTTCTAGTTTCTTATTCTCCTCGGATTGGGTTTAGACAGCAGCTCATCCCTTTGATCAGTCTGCTCTTTTGCTCCTTTTTTATGATCGACCTTTGTTATAATTGGCATATCTGGTATCAGTTTGAAAATTTAATATATGGTGCAAAAAGATTAGGAGAGGCACTTTATGCTGGAAAAGTTATGAGTGTAAGCCAACCAGGCCTGGTTGGTTTTTCAAAGGAAGTTCTCAAGCCACCCTGCATAAATTGGTTATAACCAATAGTATTTGTGTTCCATTCAGCGTGAAGTGTGTGCCCTTTTCAAGGGCTTTCCGTATACTACAGATTTTAATTTATCCTGTCTTGATCAATTTCATTTTTCATTAATAGAAGTATGATTTTGGGATTTGTTGGACCTGTTGAGCTGTACTTAAGCGCTGATGGTTGTTTTTCTCTAGGCCAAAGAATATATACAAGGATCCAGATGATGGGCGACAACGGTTTTTGCTGGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTGTATGGTTTTCATTTTATCAATATGTTTTAAGAGTTTCAGCTTCTTTAAGCAATAGCTGCATATGTGGTTGTCGAGTCATGTATTTGAAAGGGCAAACAAATTGTTTAGTTAGAAAACAAGGAATAAGTTGTGAAAAAGGATGTTGGAATTATAAGTAATCGGTATCTTTGATACAGCAGATTATTCTAGAGTAGATTAGGTGTTTGGCTTTTATTTAATTTCAAGTACATGGTCTGTTTAACGGGTTGCACTTGGATGACATTGAGTTTAGTGACATTGGTGACTTTGTCTCTATCTCTCTCATAATCAATCATTCTCTCATCAAAATAATTTATTTTAATCCTTCATCTATCATATTCTCTCATCAAAATACACTAAAGTCACCGATGTCACAAAGGCTCAATGTCACGGAAACTACTTGGGTGACATTGAGCTTTTGTGACATCGGTGACTTTAGTGGATTTTGATGAGAGAGAATGATAGATGAATGATTAAAATAAATTATTTTGATGAGAGAGAATGATTGATTATGAAAGAGTTATCGCCAATGTCATCCAAGTGCAACTCCAATGTCACCCAAGTAGTTTCCCTGTTGGGTTGCACTGAGAGGGTTCCGCTTAATAGATGTATTGAGGAAGATTCCTTTCCTTGAAACACATTGTAATTTCTCTTAATCCAGGTGAAATTCCCCTTTTTTGACAAAAAATCATGGCATGCTTTGTCATTGCTGCTTGGTGCGTGAGTTAGTTAGTATTGTAGCTTTTGTTTGTGTTCTTTTTCTTATAGTTGTTACTCTTTTGAACAGATTTGGCTCAGAACCGATATTTTGAGGACGAAGCATTCATTGGGTACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATCATGTGAGCATTATATTCTTATTGTCCCACTAAAGTCTGGAAGAGGGATTATGTTTTACAATTCTACTTAAGGGCACTGAATTATGTTAAATAGGGAAACTCTATAAGAATTTTACACAGGGATAAATGAAATTCAACATTCAATACGACAAAAGAATTTGAACCAGTTCTGTCATTTTTATTCTAGCGATGCTTTGTTCAAATGGGTGGCTTTCTGATTTAGTTGCTCATTTTTTATGAATGCTAGGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCACATCCTACCAATAAGGTAAATAGTGATATCTTTGTATCCTTTTACAAAATCATGATTTCTCCTGGATTTCATATTATAGTACTCATGTGATATACGATTCTCTATAAGTTTTTATTTAGAAGTCCTCGAGAACAAATTTTGTTGTAAATTGTATGAATTGAGACAGATAGACAGATATGGATTCTGTGTCATTTTACTTAACTTGAACAATCTATTCATACCGAAATTGTGATGCAGTAGGTATTGATAAGAATTTATTTGATTCTCAGCTTGATGTATCTATCTTATGTAATGTCTGTCACTAATAGGTTCTTTGTTTGCTTGGTTAATTACGTACATAGATGTATCAAGCCAGATTACTTGCATTTTAAGTTTAGGAATTTCTTTGCCTTGTGTTTCTTGGATTGACCAAAAATTTCTCTGTTGTAGGAATTGACACATAGACAGCAGTTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAGACCACTTCCAGAACCTAGTGCTGCGCTTCCTGGTCCGGCCTCGACTCAACCCCAGCCACCTGTGCATGCACTACCACCAGTACCTGCTACAAGTGTTGCTGTGACAACATCGTCTAGTCAAGCTCCTTCTCCAATGCCATACGGTATACCCCCTGGCTCCGGTAGTGCAAAAAATGACATGAGAAATACTTCAGCTGATAGAAGGAAAAGAAAGTGA

Protein sequence

>MS.gene006380.t1

MASKTESGSPRDTPPSPPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWKNYRNNRLKHILPRPLPEPSAALPGPASTQPQPPVHALPPVPATSVAVTTSSSQAPSPMPYGIPPGSGSAKNDMRNTSADRRKRK