AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006403

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006403.t1 MTR_1g102860 93.939 330 16 1 1 326 1 330 0.0 635
MS.gene006403.t1 MTR_7g095680 53.571 336 125 6 17 323 26 359 2.30e-109 323
MS.gene006403.t1 MTR_3g104550 63.426 216 72 4 27 240 33 243 2.87e-91 277
MS.gene006403.t1 MTR_5g029680 58.744 223 80 4 27 239 19 239 4.57e-82 257
MS.gene006403.t1 MTR_1g071360 49.032 310 122 8 23 307 15 313 2.89e-76 238
MS.gene006403.t1 MTR_1g071360 48.875 311 121 9 23 307 12 310 5.68e-76 238
MS.gene006403.t1 MTR_4g077970 56.667 210 80 4 39 240 11 217 7.04e-72 231
MS.gene006403.t1 MTR_1g061170 52.315 216 99 3 27 242 36 247 1.10e-69 224
MS.gene006403.t1 MTR_8g087540 38.062 289 159 5 39 318 11 288 1.35e-56 188
MS.gene006403.t1 MTR_8g105780 50.500 200 85 6 40 227 22 219 1.39e-52 177
MS.gene006403.t1 MTR_6g086805 43.627 204 108 3 40 243 11 207 6.76e-52 175
MS.gene006403.t1 MTR_2g100670 44.737 190 96 2 34 220 27 210 2.04e-51 172
MS.gene006403.t1 MTR_2g100670 44.737 190 96 2 34 220 135 318 2.56e-50 172
MS.gene006403.t1 MTR_6g043060 42.478 226 115 5 40 262 22 235 8.33e-50 169
MS.gene006403.t1 MTR_2g100680 40.271 221 118 4 25 240 14 225 1.70e-49 171
MS.gene006403.t1 MTR_8g083100 45.545 202 98 5 41 239 23 215 2.34e-48 169
MS.gene006403.t1 MTR_2g017890 41.270 189 105 2 31 214 6 193 2.53e-42 150
MS.gene006403.t1 MTR_3g101870 65.049 103 36 0 34 136 18 120 3.71e-41 147
MS.gene006403.t1 MTR_5g089170 71.579 95 27 0 38 132 23 117 1.12e-40 143
MS.gene006403.t1 MTR_5g010680 64.894 94 33 0 38 131 22 115 1.09e-37 138
MS.gene006403.t1 MTR_1g100777 62.766 94 35 0 38 131 16 109 3.76e-37 135
MS.gene006403.t1 MTR_0020s0020 62.766 94 35 0 38 131 31 124 3.88e-37 136
MS.gene006403.t1 MTR_7g091370 52.941 119 49 2 31 142 9 127 1.13e-35 129
MS.gene006403.t1 MTR_5g017470 60.417 96 38 0 37 132 6 101 6.42e-35 129
MS.gene006403.t1 MTR_4g088900 42.331 163 85 3 38 193 31 191 1.47e-32 120
MS.gene006403.t1 MTR_1g061170 45.185 135 72 2 97 231 11 143 9.42e-31 119
MS.gene006403.t1 MTR_4g045757 61.194 67 26 0 31 97 5 71 7.14e-21 85.5
MS.gene006403.t1 MTR_2g043940 34.266 143 73 5 80 214 11 140 1.12e-14 74.3
MS.gene006403.t1 MTR_5g047190 41.304 92 47 2 48 132 1 92 1.22e-14 69.3
MS.gene006403.t1 MTR_6g044340 28.846 156 100 4 92 244 14 161 3.86e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006403.t1 AT3G22830 52.355 361 112 6 22 323 43 402 7.90e-120 351
MS.gene006403.t1 AT2G26150 43.252 326 146 9 27 324 31 345 9.68e-86 262
MS.gene006403.t1 AT2G26150 43.252 326 146 9 27 324 31 345 9.68e-86 262
MS.gene006403.t1 AT3G51910 57.820 211 74 3 31 240 20 216 1.66e-81 248
MS.gene006403.t1 AT4G17750 53.414 249 90 6 16 240 22 268 7.30e-78 246
MS.gene006403.t1 AT5G16820 58.065 217 82 3 36 244 23 238 9.85e-77 243
MS.gene006403.t1 AT5G16820 58.065 217 82 3 36 244 23 238 9.85e-77 243
MS.gene006403.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.11e-76 242
MS.gene006403.t1 AT1G32330 53.750 240 94 4 16 239 11 249 3.22e-76 242
MS.gene006403.t1 AT5G43840 57.732 194 69 1 27 220 6 186 2.89e-75 233
MS.gene006403.t1 AT3G02990 56.604 212 85 2 39 244 22 232 2.28e-73 234
MS.gene006403.t1 AT3G63350 51.339 224 90 3 18 233 6 218 3.62e-73 228
MS.gene006403.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.37e-64 209
MS.gene006403.t1 AT5G03720 41.091 275 161 1 14 288 29 302 2.37e-64 209
MS.gene006403.t1 AT1G67970 48.837 215 101 5 40 248 19 230 3.87e-58 192
MS.gene006403.t1 AT3G24520 44.059 202 91 3 40 241 17 196 7.56e-51 172
MS.gene006403.t1 AT4G13980 43.350 203 102 3 41 239 24 217 3.08e-49 171
MS.gene006403.t1 AT5G54070 40.708 226 122 4 33 254 63 280 6.52e-48 164
MS.gene006403.t1 AT2G41690 39.216 204 107 4 13 209 23 216 2.35e-41 144
MS.gene006403.t1 AT4G18880 44.792 192 102 2 32 220 7 197 3.94e-41 148
MS.gene006403.t1 AT1G46264 64.423 104 37 0 31 134 25 128 8.55e-41 145
MS.gene006403.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene006403.t1 AT5G45710 41.624 197 110 3 39 232 12 206 1.10e-40 145
MS.gene006403.t1 AT2G26150 50.345 145 68 3 100 241 49 192 9.61e-39 139
MS.gene006403.t1 AT2G26150 50.345 145 68 3 100 241 49 192 9.61e-39 139
MS.gene006403.t1 AT4G11660 60.825 97 38 0 38 134 57 153 8.42e-38 139
MS.gene006403.t1 AT4G36990 54.464 112 47 1 38 149 12 119 4.23e-36 132
MS.gene006403.t1 AT5G62020 61.702 94 36 0 38 131 21 114 1.34e-35 131
MS.gene006403.t1 AT4G18870 37.097 124 75 1 29 149 135 258 6.83e-21 91.3
MS.gene006403.t1 AT4G18870 48.315 89 41 2 41 127 14 99 1.08e-19 87.8
MS.gene006403.t1 AT4G19630 39.623 106 52 4 36 131 7 110 1.62e-13 67.0
MS.gene006403.t1 AT1G77570 37.778 90 53 2 41 127 27 116 4.98e-12 63.5

Find 68 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCAAAGCCTCCTATTT+AGG 0.202422 1.3:+70669738 None:intergenic
ACTAACTGTTGCAAGAAATT+AGG 0.251206 1.3:+70670071 None:intergenic
GGAACAATAGCTTTGTTGTT+TGG 0.274853 1.3:-70671210 MS.gene006403:CDS
TAAATTGTAGGGGTTTAAAA+AGG 0.303820 1.3:-70670423 MS.gene006403:intron
TTCAAGTTGATTAATTTGAT+TGG 0.327468 1.3:+70669878 None:intergenic
GTTGATGCAGATGTTGAATT+AGG 0.327469 1.3:-70669966 MS.gene006403:CDS
GAACAATAGCTTTGTTGTTT+GGG 0.327590 1.3:-70671209 MS.gene006403:CDS
TAAGAGATACTGAAGTGTTT+TGG 0.339566 1.3:-70669854 MS.gene006403:CDS
CCACAAATCATATAGTTTCA+TGG 0.352549 1.3:-70671240 MS.gene006403:CDS
TGCCTCTAGTCCTCCTAAAT+AGG 0.370362 1.3:-70669751 None:intergenic
ATTAAGTTGCCGGACAAAAC+TGG 0.370804 1.3:+70671129 None:intergenic
CTTGTCTGTCGCGCCTCAAC+CGG 0.383841 1.3:+70670234 None:intergenic
TTGTTGTGCTTGAAGAATCT+AGG 0.383883 1.3:+70671157 None:intergenic
TGTGTTGAGCTGGGAAGGTT+TGG 0.384498 1.3:-70670278 MS.gene006403:CDS
CATATAGTTTCATGGAGTAC+TGG 0.392040 1.3:-70671232 MS.gene006403:CDS
AAAACAGATGATGAATTTCA+TGG 0.398561 1.3:-70670111 MS.gene006403:CDS
GGAATGGAGAAAAGAGTTAG+AGG 0.408095 1.3:-70670039 MS.gene006403:CDS
TTCTTCTAATGTTCTTCAAA+AGG 0.412252 1.3:+70670345 None:intergenic
CCATGAAACTATATGATTTG+TGG 0.413159 1.3:+70671240 None:intergenic
AGGGAAGGACTTCATGAAAA+TGG 0.418874 1.3:-70671310 MS.gene006403:CDS
TCACATAGGTATTAAGTTGC+CGG 0.435323 1.3:+70671119 None:intergenic
TGAAGTCCTTCCCTTGGTTG+AGG 0.441996 1.3:+70671319 None:intergenic
ACATCTGCATCAACATTACT+AGG 0.447700 1.3:+70669975 None:intergenic
TATTGAAGATGTTGATGTAT+TGG 0.457804 1.3:-70669793 MS.gene006403:CDS
GCTAATGAGATGTTTCTAAG+AGG 0.461550 1.3:-70670377 MS.gene006403:CDS
GGGATGAAGGAGGAGTTTGT+TGG 0.463474 1.3:-70671373 MS.gene006403:CDS
ATCTTGAAGCAATGGAAAGA+AGG 0.466935 1.3:-70670157 MS.gene006403:CDS
GAATCGAAGTGGACCGGTTG+AGG 0.470687 1.3:-70670247 MS.gene006403:CDS
ATGAATATGAATCTTCATCA+TGG 0.483530 1.3:-70671397 MS.gene006403:CDS
CGTCATGTGTTGAGCTGGGA+AGG 0.490133 1.3:-70670283 MS.gene006403:CDS
GCGCGACAGACAAGTTCTAA+TGG 0.493467 1.3:-70670225 MS.gene006403:CDS
AAAGGTTGATGCAGATAGGT+GGG 0.494489 1.3:-70670405 MS.gene006403:CDS
AGACCCGTCATGTGTTGAGC+TGG 0.495058 1.3:-70670288 MS.gene006403:CDS
ATGAAGGAGGAGTTTGTTGG+AGG 0.495698 1.3:-70671370 MS.gene006403:CDS
AGTTAGTTCAGCAGAAGGAA+TGG 0.496467 1.3:-70670055 MS.gene006403:CDS
AGGTTCACCAACCACAGAAA+AGG 0.504219 1.3:+70671339 None:intergenic
AGGGAGAAGAATAATAGAAA+AGG 0.505225 1.3:+70671177 None:intergenic
TGTTGTGCTTGAAGAATCTA+GGG 0.511168 1.3:+70671158 None:intergenic
TCTTCATCATGGTGGGATGA+AGG 0.511768 1.3:-70671386 MS.gene006403:CDS
ATCAAAGCCTCCTATTTAGG+AGG 0.518160 1.3:+70669741 None:intergenic
ACAAGTTCTAATGGTTGAGT+TGG 0.523658 1.3:-70670216 MS.gene006403:CDS
TGGCAAGATTTGTTTAAGGA+GGG 0.525419 1.3:-70669834 MS.gene006403:CDS
CTGGGAAGGTTTGGATTAGA+CGG 0.525469 1.3:-70670269 MS.gene006403:CDS
TTGGCAAGATTTGTTTAAGG+AGG 0.525683 1.3:-70669835 MS.gene006403:CDS
TAGAACTCATCTTGAAGCAA+TGG 0.536822 1.3:-70670165 MS.gene006403:CDS
AAAAGGTTGATGCAGATAGG+TGG 0.546223 1.3:-70670406 MS.gene006403:CDS
TTCCCAGCTCAACACATGAC+GGG 0.552361 1.3:+70670285 None:intergenic
GATGATGAATTTCATGGCAA+GGG 0.556515 1.3:-70670105 MS.gene006403:CDS
ATATAGTTTCATGGAGTACT+GGG 0.559738 1.3:-70671231 MS.gene006403:CDS
GACCCGTCATGTGTTGAGCT+GGG 0.564277 1.3:-70670287 MS.gene006403:CDS
AGATGATGAATTTCATGGCA+AGG 0.575521 1.3:-70670106 MS.gene006403:CDS
CTTCCCAGCTCAACACATGA+CGG 0.580827 1.3:+70670284 None:intergenic
CTCCTATTTAGGAGGACTAG+AGG 0.581849 1.3:+70669749 None:intergenic
GCAACAGTTAGTTCAGCAGA+AGG 0.585939 1.3:-70670060 MS.gene006403:CDS
TGAACAACATCAAGATGTTG+AGG 0.592174 1.3:-70669907 MS.gene006403:CDS
AGAATAATAGAAAAGGCTTG+AGG 0.598445 1.3:+70671184 None:intergenic
TGGATTAGACGGAATCGAAG+TGG 0.602364 1.3:-70670258 MS.gene006403:CDS
GATGTATTGGCTGAGCAACT+TGG 0.605475 1.3:-70669780 MS.gene006403:CDS
AATATGAATCTTCATCATGG+TGG 0.612258 1.3:-70671394 MS.gene006403:CDS
TAGACGGAATCGAAGTGGAC+CGG 0.614296 1.3:-70670253 MS.gene006403:CDS
GAAACTATATGATTTGTGGA+AGG 0.623337 1.3:+70671244 None:intergenic
AGAAGGAGAACTATTGACGA+AGG 0.628728 1.3:-70669999 MS.gene006403:CDS
GAAGGAGAACTATTGACGAA+GGG 0.637249 1.3:-70669998 MS.gene006403:CDS
ATATGAATCTTCATCATGGT+GGG 0.643772 1.3:-70671393 MS.gene006403:CDS
TCATCATGGTGGGATGAAGG+AGG 0.650270 1.3:-70671383 MS.gene006403:CDS
GGTGAACCTCAACCAAGGGA+AGG 0.659511 1.3:-70671325 MS.gene006403:CDS
TGGTTGGTGAACCTCAACCA+AGG 0.664718 1.3:-70671330 MS.gene006403:CDS
GGTTGGTGAACCTCAACCAA+GGG 0.679182 1.3:-70671329 MS.gene006403:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGAAATTAAATTGTA+GGG - chr1.3:70670715-70670734 MS.gene006403:intron 10.0%
!!! AACATTTTTGTTTCATTATA+TGG - chr1.3:70670188-70670207 MS.gene006403:CDS 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG - chr1.3:70670716-70670735 MS.gene006403:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG - chr1.3:70670714-70670733 MS.gene006403:intron 15.0%
!! AAACAAACACTAATTAACAT+TGG + chr1.3:70670648-70670667 None:intergenic 20.0%
!! ATGGAATAATGTAGTAATAA+AGG - chr1.3:70670207-70670226 MS.gene006403:CDS 20.0%
!!! AAATTTTTTCTAAGAAGAGA+AGG - chr1.3:70671133-70671152 MS.gene006403:CDS 20.0%
!!! TAGTAATAAAGGCTATTTTT+GGG - chr1.3:70670218-70670237 MS.gene006403:CDS 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG + chr1.3:70671274-70671293 None:intergenic 20.0%
!!! TTTGACTTTTCTCTATATTA+GGG + chr1.3:70670335-70670354 None:intergenic 20.0%
!!! TTTTGACTTTTCTCTATATT+AGG + chr1.3:70670336-70670355 None:intergenic 20.0%
! AAAACAGATGATGAATTTCA+TGG - chr1.3:70671038-70671057 MS.gene006403:intron 25.0%
! AAAAGTCAAAATGTATTGGA+CGG - chr1.3:70670345-70670364 MS.gene006403:CDS 25.0%
! AGAGAAAAGTCAAAATGTAT+TGG - chr1.3:70670341-70670360 MS.gene006403:CDS 25.0%
! ATGAATATGAATCTTCATCA+TGG - chr1.3:70669752-70669771 MS.gene006403:CDS 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG - chr1.3:70670726-70670745 MS.gene006403:intron 25.0%
! TATCTCATCAGATTAAACAA+AGG + chr1.3:70670115-70670134 None:intergenic 25.0%
! TATTGAAGATGTTGATGTAT+TGG - chr1.3:70671356-70671375 MS.gene006403:CDS 25.0%
! TTAAATACTACTACTCACAT+AGG + chr1.3:70670047-70670066 None:intergenic 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG + chr1.3:70670807-70670826 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG - chr1.3:70670115-70670134 MS.gene006403:CDS 25.0%
!! GTTTTCATTGAATGGAATTA+TGG - chr1.3:70670664-70670683 MS.gene006403:intron 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG - chr1.3:70670296-70670315 MS.gene006403:CDS 25.0%
!!! CTATATCATATGTTTTTGTG+AGG + chr1.3:70669877-70669896 None:intergenic 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG - chr1.3:70670690-70670709 MS.gene006403:intron 25.0%
!!! GTAGTAATAAAGGCTATTTT+TGG - chr1.3:70670217-70670236 MS.gene006403:CDS 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG - chr1.3:70670656-70670675 MS.gene006403:intron 25.0%
AAACACGACATTGATACATT+TGG - chr1.3:70670541-70670560 MS.gene006403:intron 30.0%
AAAGTCAAAATGTATTGGAC+GGG - chr1.3:70670346-70670365 MS.gene006403:CDS 30.0%
AATATGAATCTTCATCATGG+TGG - chr1.3:70669755-70669774 MS.gene006403:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG + chr1.3:70671081-70671100 None:intergenic 30.0%
AGAATAATAGAAAAGGCTTG+AGG + chr1.3:70669968-70669987 None:intergenic 30.0%
AGGGAGAAGAATAATAGAAA+AGG + chr1.3:70669975-70669994 None:intergenic 30.0%
ATATGAATCTTCATCATGGT+GGG - chr1.3:70669756-70669775 MS.gene006403:CDS 30.0%
ATTGTCTCTTATGATGAGAA+GGG + chr1.3:70670147-70670166 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG - chr1.3:70669909-70669928 MS.gene006403:CDS 30.0%
CCATGAAACTATATGATTTG+TGG + chr1.3:70669912-70669931 None:intergenic 30.0%
TATTGTCTCTTATGATGAGA+AGG + chr1.3:70670148-70670167 None:intergenic 30.0%
! ATATAGTTTCATGGAGTACT+GGG - chr1.3:70669918-70669937 MS.gene006403:CDS 30.0%
! CTTTGGAAAGAAATGAATGA+AGG - chr1.3:70670257-70670276 MS.gene006403:CDS 30.0%
! GAAACTATATGATTTGTGGA+AGG + chr1.3:70669908-70669927 None:intergenic 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG - chr1.3:70669940-70669959 MS.gene006403:CDS 30.0%
!! GTTTTGGCAAGATTTGTTTA+AGG - chr1.3:70671311-70671330 MS.gene006403:CDS 30.0%
!! TAAGAGATACTGAAGTGTTT+TGG - chr1.3:70671295-70671314 MS.gene006403:CDS 30.0%
!! TCATATGTTTTTGTGAGGAA+TGG + chr1.3:70669872-70669891 None:intergenic 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG - chr1.3:70670740-70670759 MS.gene006403:intron 30.0%
AAGTCAAAATGTATTGGACG+GGG - chr1.3:70670347-70670366 MS.gene006403:CDS 35.0%
ACATCTGCATCAACATTACT+AGG + chr1.3:70671177-70671196 None:intergenic 35.0%
AGATGATGAATTTCATGGCA+AGG - chr1.3:70671043-70671062 MS.gene006403:intron 35.0%
ATCTTGAAGCAATGGAAAGA+AGG - chr1.3:70670992-70671011 MS.gene006403:intron 35.0%
CATATAGTTTCATGGAGTAC+TGG - chr1.3:70669917-70669936 MS.gene006403:CDS 35.0%
CTAATGATTGAGAACATGTC+TGG - chr1.3:70670503-70670522 MS.gene006403:intron 35.0%
GAGTTAGGAATGAATGACTT+TGG - chr1.3:70670240-70670259 MS.gene006403:CDS 35.0%
GATGATGAATTTCATGGCAA+GGG - chr1.3:70671044-70671063 MS.gene006403:intron 35.0%
GTAGATAATATGACATCACG+AGG - chr1.3:70670462-70670481 MS.gene006403:intron 35.0%
GTTGATGCAGATGTTGAATT+AGG - chr1.3:70671183-70671202 MS.gene006403:CDS 35.0%
TAACATTGGCATAGACATAG+AGG + chr1.3:70670634-70670653 None:intergenic 35.0%
TAGAACTCATCTTGAAGCAA+TGG - chr1.3:70670984-70671003 MS.gene006403:intron 35.0%
TGAACAACATCAAGATGTTG+AGG - chr1.3:70671242-70671261 MS.gene006403:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG + chr1.3:70669994-70670013 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG + chr1.3:70669995-70670014 None:intergenic 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG - chr1.3:70670933-70670952 MS.gene006403:intron 35.0%
! GCTAATGAGATGTTTCTAAG+AGG - chr1.3:70670772-70670791 MS.gene006403:intron 35.0%
! TCACATAGGTATTAAGTTGC+CGG + chr1.3:70670033-70670052 None:intergenic 35.0%
! TGGCAAGATTTGTTTAAGGA+GGG - chr1.3:70671315-70671334 MS.gene006403:CDS 35.0%
! TTGGCAAGATTTGTTTAAGG+AGG - chr1.3:70671314-70671333 MS.gene006403:CDS 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG - chr1.3:70670011-70670030 MS.gene006403:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG - chr1.3:70669939-70669958 MS.gene006403:CDS 35.0%
!! TATGTTTTTGTGAGGAATGG+TGG + chr1.3:70669869-70669888 None:intergenic 35.0%
!!! AAAGGCTATTTTTGGGAGTT+AGG - chr1.3:70670225-70670244 MS.gene006403:CDS 35.0%
AGAAGGAGAACTATTGACGA+AGG - chr1.3:70671150-70671169 MS.gene006403:CDS 40.0%
AGGGAAGGACTTCATGAAAA+TGG - chr1.3:70669839-70669858 MS.gene006403:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG - chr1.3:70671094-70671113 MS.gene006403:intron 40.0%
GAAGGAGAACTATTGACGAA+GGG - chr1.3:70671151-70671170 MS.gene006403:CDS 40.0%
GGAATGGAGAAAAGAGTTAG+AGG - chr1.3:70671110-70671129 MS.gene006403:intron 40.0%
! AGGAAGTTCTTCCTTTTCTG+TGG - chr1.3:70669799-70669818 MS.gene006403:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG - chr1.3:70669803-70669822 MS.gene006403:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG + chr1.3:70670023-70670042 None:intergenic 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG + chr1.3:70669839-70669858 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG - chr1.3:70670743-70670762 MS.gene006403:intron 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG - chr1.3:70670744-70670763 MS.gene006403:intron 40.0%
AGGTTCACCAACCACAGAAA+AGG + chr1.3:70669813-70669832 None:intergenic 45.0%
GCAACAGTTAGTTCAGCAGA+AGG - chr1.3:70671089-70671108 MS.gene006403:intron 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG - chr1.3:70670880-70670899 MS.gene006403:intron 45.0%
! GTTTTTGTGAGGAATGGTGG+AGG + chr1.3:70669866-70669885 None:intergenic 45.0%
! TCTTCATCATGGTGGGATGA+AGG - chr1.3:70669763-70669782 MS.gene006403:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG - chr1.3:70670891-70670910 MS.gene006403:intron 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG - chr1.3:70669779-70669798 MS.gene006403:CDS 45.0%
!! GATGTATTGGCTGAGCAACT+TGG - chr1.3:70671369-70671388 MS.gene006403:CDS 45.0%
CTTCCCAGCTCAACACATGA+CGG + chr1.3:70670868-70670887 None:intergenic 50.0%
GGGATGAAGGAGGAGTTTGT+TGG - chr1.3:70669776-70669795 MS.gene006403:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG - chr1.3:70670896-70670915 MS.gene006403:intron 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG + chr1.3:70669833-70669852 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG - chr1.3:70670871-70670890 MS.gene006403:intron 50.0%
TTCCCAGCTCAACACATGAC+GGG + chr1.3:70670867-70670886 None:intergenic 50.0%
! GCGCGACAGACAAGTTCTAA+TGG - chr1.3:70670924-70670943 MS.gene006403:intron 50.0%
! TCATCATGGTGGGATGAAGG+AGG - chr1.3:70669766-70669785 MS.gene006403:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG - chr1.3:70669820-70669839 MS.gene006403:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG - chr1.3:70669819-70669838 MS.gene006403:CDS 50.0%
AGACCCGTCATGTGTTGAGC+TGG - chr1.3:70670861-70670880 MS.gene006403:intron 55.0%
CGTCATGTGTTGAGCTGGGA+AGG - chr1.3:70670866-70670885 MS.gene006403:intron 55.0%
GAATCGAAGTGGACCGGTTG+AGG - chr1.3:70670902-70670921 MS.gene006403:intron 55.0%
GACCCGTCATGTGTTGAGCT+GGG - chr1.3:70670862-70670881 MS.gene006403:intron 55.0%
GGTGAACCTCAACCAAGGGA+AGG - chr1.3:70669824-70669843 MS.gene006403:CDS 55.0%
CTTGTCTGTCGCGCCTCAAC+CGG + chr1.3:70670918-70670937 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 70669752 70671419 70669752 ID=MS.gene006403
chr1.3 mRNA 70669752 70671419 70669752 ID=MS.gene006403.t1;Parent=MS.gene006403
chr1.3 exon 70671123 70671419 70671123 ID=MS.gene006403.t1.exon1;Parent=MS.gene006403.t1
chr1.3 CDS 70671123 70671419 70671123 ID=cds.MS.gene006403.t1;Parent=MS.gene006403.t1
chr1.3 exon 70669752 70670435 70669752 ID=MS.gene006403.t1.exon2;Parent=MS.gene006403.t1
chr1.3 CDS 70669752 70670435 70669752 ID=cds.MS.gene006403.t1;Parent=MS.gene006403.t1
Gene Sequence

>MS.gene006403

ATGAATATGAATCTTCATCATGGTGGGATGAAGGAGGAGTTTGTTGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACTGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTTAATACCTATGTGAGTAGTAGTATTTAATTTCAACTCTCTACTCAAGTACTGATGATATATATGTTTTTTTTTCCTTTGTTTAATCTGATGAGATAAGGCAACGTCCCTTCTCATCATAAGAGACAATATATATATGACATCACTAGAGAACATTTTTGTTTCATTATATGGAATAATGTAGTAATAAAGGCTATTTTTGGGAGTTAGGAATGAATGACTTTGGAAAGAAATGAATGAAGGACAATCATCTAGCTTGATTGTGTGAGTTATTTTTCTTGGTAGTACAAAATTTCCCTAATATAGAGAAAAGTCAAAATGTATTGGACGGGGATTTTAGAGAATTTCAATAAATTCTTCGAATCATTTTAATGTTTAAATTATACTCTCAAAATTAACATAGACAGACATCTATATAACAAGTTGTAGATAATATGACATCACGAGGAAACATTTTTGTTCGTCTCTAATGATTGAGAACATGTCTGGTATGTGACACGTTTCAAACACGACATTGATACATTTGGTTCTATTCAATTAATTCTATTTTATTTAAAATTATTAATGATGTTTATGTGTGAGTGTCATGTCATACCTCTATGTCTATGCCAATGTTAATTAGTGTTTGTTTTCATTGAATGGAATTATGGATTGCATTTTGATTTGAAAATGAAGGAGAAATTTGAAATTAAATTGTAGGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAACAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGACCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAGCAGAATACTAGAACTCATCTTGAAGCAATGGAAAGAAGGCTTAAAAGAAGTGAACAGAAACAAAAACAGATGATGAATTTCATGGCAAGGGCAATACAAAAGCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGAAGGAGAACTATTGACGAAGGGCCTAGTAATGTTGATGCAGATGTTGAATTAGGATATGTTGATAAAGATTGCTTAAATTTTGTCAAACTTGAACAACATCAAGATGTTGAGGAAAACTCCAATCAAATTAATCAACTTGAAGTAAGAGATACTGAAGTGTTTTGGCAAGATTTGTTTAAGGAGGGTATTGAAGATGAAATAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG
Protein sequence

>MS.gene006403.t1

MNMNLHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLRGQKILLKNIRRRKTNQSQVMQALDPSCVELGRFGLDGIEVDRLRRDRQVLMVELVKLRQQQQNTRTHLEAMERRLKRSEQKQKQMMNFMARAIQKPNFLQQLVQQKEWRKELEEIFSKKRRRTIDEGPSNVDADVELGYVDKDCLNFVKLEQHQDVEENSNQINQLEVRDTEVFWQDLFKEGIEDEIDIEDVDVLAEQLGYLASSPPK