AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006422

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006422.t1 MTR_1g103190 76.678 283 34 4 136 417 4 255 2.24e-137 393
MS.gene006422.t1 MTR_1g103230 53.666 341 108 9 99 413 193 509 1.11e-86 276
MS.gene006422.t1 MTR_5g006530 35.423 319 146 9 110 415 66 337 3.79e-35 137
MS.gene006422.t1 MTR_5g006530 35.647 317 144 9 112 415 292 561 4.80e-35 137
MS.gene006422.t1 MTR_1g103220 46.784 171 69 3 50 208 76 236 5.13e-32 122
MS.gene006422.t1 MTR_2g049305 45.263 95 41 3 320 407 45 135 6.66e-17 81.3
MS.gene006422.t1 MTR_1g103180 33.333 117 64 1 265 381 107 209 2.30e-14 74.3
MS.gene006422.t1 MTR_1g012020 42.683 82 43 2 326 404 480 560 7.60e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006422.t1 AT3G22760 51.515 99 44 2 314 409 175 272 1.27e-21 97.1
MS.gene006422.t1 AT3G22760 51.515 99 44 2 314 409 298 395 1.99e-21 97.1
MS.gene006422.t1 AT3G22780 54.762 84 35 1 329 409 385 468 2.49e-20 94.0
MS.gene006422.t1 AT4G14770 55.682 88 31 3 326 409 359 442 1.28e-19 91.7
MS.gene006422.t1 AT4G14770 55.682 88 31 3 326 409 340 423 1.46e-19 91.7
MS.gene006422.t1 AT4G14770 55.682 88 31 3 326 409 339 422 1.52e-19 91.7
MS.gene006422.t1 AT3G04850 50.704 71 32 1 342 409 450 520 6.55e-17 83.2

Find 79 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCCCATGTTGCTTTAA+TGG 0.092114 1.3:-70896695 MS.gene006422:CDS
GATGAAATTAACTATGTTCT+TGG 0.205080 1.3:-70896787 MS.gene006422:CDS
CCGATGGATCCATCTTCTTC+TGG 0.296926 1.3:-70895746 MS.gene006422:CDS
CTACACTTTCCTCTTCCTTT+GGG 0.315047 1.3:+70895673 None:intergenic
GAAAACGAAAATATGTCTTC+TGG 0.316083 1.3:-70896010 MS.gene006422:CDS
ACTACACTTTCCTCTTCCTT+TGG 0.336631 1.3:+70895672 None:intergenic
GTATATAGCTTGCACATATT+AGG 0.337557 1.3:-70896252 MS.gene006422:intron
TTGAGGGTGCAACAAATATT+CGG 0.338203 1.3:-70896741 MS.gene006422:CDS
GTTCACAGCCAAGCAATTCA+TGG 0.367351 1.3:+70896965 None:intergenic
ATATCCTGAGACAAAACTTC+AGG 0.375494 1.3:+70896901 None:intergenic
ATAGTTGTTCCTTTGCGAAT+TGG 0.377643 1.3:+70896186 None:intergenic
CCTTGCAAAACACAACTTTG+TGG 0.386938 1.3:+70896067 None:intergenic
TCAAGGAAGGACTCAGTTGC+AGG 0.389511 1.3:-70896934 MS.gene006422:CDS
TCATCATCCACTCTCTGAAA+TGG 0.397883 1.3:+70896664 None:intergenic
CGAGCTTCCAGATCTGTATC+AGG 0.402443 1.3:+70895129 None:intergenic
ATATTTGTTGCACCCTCAAT+TGG 0.411515 1.3:+70896745 None:intergenic
GCCATCAGAGAATGAAGTTC+AGG 0.423427 1.3:-70895888 MS.gene006422:CDS
TCAAATTTAACTAGGAAAGA+AGG 0.424293 1.3:-70895542 MS.gene006422:CDS
TTCTGGTTCAAATCATGAAA+AGG 0.431681 1.3:-70895729 MS.gene006422:CDS
TGAGGGTGCAACAAATATTC+GGG 0.440869 1.3:-70896740 MS.gene006422:CDS
ATTTCATCAATTGAGATTTG+AGG 0.455082 1.3:+70896802 None:intergenic
TCAATTGAGATTTGAGGATC+AGG 0.460451 1.3:+70896808 None:intergenic
TCACCAATGGAAACACAGTT+GGG 0.472250 1.3:-70895911 MS.gene006422:CDS
TGATTTGAACCAGAAGAAGA+TGG 0.476712 1.3:+70895737 None:intergenic
TATTGTGAGTGCTATGCTGC+TGG 0.485810 1.3:-70895198 MS.gene006422:CDS
TTCACCAATGGAAACACAGT+TGG 0.485894 1.3:-70895912 MS.gene006422:CDS
AAATAAACCTGATACAGATC+TGG 0.488763 1.3:-70895136 MS.gene006422:CDS
TTTCATCTTTCTGCAAGGCA+AGG 0.494083 1.3:-70895956 MS.gene006422:CDS
CGAAGAGTAGACTGGTGATA+AGG 0.502503 1.3:+70897007 None:intergenic
TTCATCTTTCTGCAAGGCAA+GGG 0.505954 1.3:-70895955 MS.gene006422:CDS
AACTGTGTTTCCATTGGTGA+AGG 0.508980 1.3:+70895914 None:intergenic
TACACTTTCCTCTTCCTTTG+GGG 0.513200 1.3:+70895674 None:intergenic
GTCGATATCCATGAATTGCT+TGG 0.513227 1.3:-70896973 MS.gene006422:CDS
CGACGGCTCAGAACCAATTG+AGG 0.520716 1.3:-70896758 MS.gene006422:CDS
GCCTGAACTTCATTCTCTGA+TGG 0.525870 1.3:+70895887 None:intergenic
CTTAATGCATGGCAATATGC+AGG 0.526334 1.3:-70897049 None:intergenic
GGCCCCAACTGTGTTTCCAT+TGG 0.528912 1.3:+70895908 None:intergenic
GAGAAGGACAATGATAGCGC+AGG 0.533624 1.3:-70895777 MS.gene006422:CDS
ATCACTGGTCCCTTCACCAA+TGG 0.541219 1.3:-70895924 MS.gene006422:CDS
GCTGTGAACAAGACGGCTCA+AGG 0.547419 1.3:-70896951 MS.gene006422:CDS
TTCAAATCATGAAAAGGAAG+AGG 0.548313 1.3:-70895723 MS.gene006422:CDS
CAAATTTAACTAGGAAAGAA+GGG 0.549343 1.3:-70895541 MS.gene006422:CDS
TTGGTGAAGGGACCAGTGAT+AGG 0.549970 1.3:+70895927 None:intergenic
CCCGAAAAGGACAATGAAAG+TGG 0.550988 1.3:-70895840 MS.gene006422:CDS
AGGCTACAAAAGATTTCAGT+CGG 0.553198 1.3:-70895868 MS.gene006422:CDS
GCAAGGGCATTGCCTATCAC+TGG 0.554620 1.3:-70895939 MS.gene006422:CDS
TCAGTCGGAGTACCCCGAAA+AGG 0.559557 1.3:-70895853 MS.gene006422:CDS
TGTTATCCATTAAAGCAACA+TGG 0.566696 1.3:+70896689 None:intergenic
AGGACTCAGTTGCAGGTGAA+AGG 0.567399 1.3:-70896927 MS.gene006422:CDS
TACAGATCTGGAAGCTCGCA+CGG 0.571736 1.3:-70895124 MS.gene006422:CDS
CCAGAAGAAGATGGATCCAT+CGG 0.573274 1.3:+70895746 None:intergenic
TGAACAAGACGGCTCAAGGA+AGG 0.575400 1.3:-70896947 MS.gene006422:CDS
CATGCATGAGTTGAATCTGT+TGG 0.576261 1.3:+70896850 None:intergenic
GTTATCCATTAAAGCAACAT+GGG 0.577336 1.3:+70896690 None:intergenic
TGCAGAAAGATGAAAAGAAG+AGG 0.577553 1.3:+70895964 None:intergenic
TAACAATCCATTTCAGAGAG+TGG 0.579054 1.3:-70896671 MS.gene006422:CDS
AGAAGGACAATGATAGCGCA+GGG 0.582541 1.3:-70895776 MS.gene006422:CDS
TTTCTCATCGAAGAGTAGAC+TGG 0.584654 1.3:+70896999 None:intergenic
GACGGCTCAGAACCAATTGA+GGG 0.585234 1.3:-70896757 MS.gene006422:CDS
CAACAGATTCAACTCATGCA+TGG 0.591788 1.3:-70896849 MS.gene006422:CDS
AGTTAAATCAAAACATGAGA+AGG 0.592480 1.3:-70895793 MS.gene006422:CDS
ACAGCTTTAGGAACAAATGC+AGG 0.596314 1.3:+70895081 None:intergenic
ACACTTTCCTCTTCCTTTGG+GGG 0.596466 1.3:+70895675 None:intergenic
TATGTTCTTGGATTACTCGA+CGG 0.597063 1.3:-70896775 MS.gene006422:CDS
GTACAACAAAATTTGACAGA+AGG 0.600348 1.3:-70896138 MS.gene006422:CDS
TTCGGGAAGATAATCAAACA+TGG 0.601812 1.3:-70896723 MS.gene006422:CDS
ACTGTGTTTCCATTGGTGAA+GGG 0.604064 1.3:+70895915 None:intergenic
GGCACAAGTCAAATTTAACT+AGG 0.609841 1.3:-70895550 MS.gene006422:CDS
GCTGCTGGAGTCTACTGCAA+AGG 0.622581 1.3:-70895183 MS.gene006422:CDS
ATATTAGGCGCTGTGTAGAG+AGG 0.625695 1.3:-70896237 MS.gene006422:CDS
GCTTTAGGAACAAATGCAGG+TGG 0.636351 1.3:+70895084 None:intergenic
AGCGCAGGGGAAACGTCCGA+TGG 0.637023 1.3:-70895762 MS.gene006422:CDS
AGAGTAGACTGGTGATAAGG+AGG 0.642260 1.3:+70897010 None:intergenic
CTGAGATGACCAATTCGCAA+AGG 0.656692 1.3:-70896195 MS.gene006422:CDS
ATTTCAGAGAGTGGATGATG+AGG 0.656749 1.3:-70896662 MS.gene006422:intron
CACCAATGGAAACACAGTTG+GGG 0.660851 1.3:-70895910 MS.gene006422:CDS
TCGGGAAGATAATCAAACAT+GGG 0.661683 1.3:-70896722 MS.gene006422:CDS
TTGCTTGGCTGTGAACAAGA+CGG 0.667927 1.3:-70896958 MS.gene006422:CDS
GAAGGACAATGATAGCGCAG+GGG 0.746995 1.3:-70895775 MS.gene006422:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTAACATATAATAA+TGG + chr1.3:70896474-70896493 None:intergenic 10.0%
!!! TGAAAGTAATTTTATATTTA+CGG + chr1.3:70896758-70896777 None:intergenic 10.0%
!!! ATTGTTTTTTTTTAGTTAGA+TGG - chr1.3:70896691-70896710 MS.gene006422:CDS 15.0%
!! AACAAATTGCATACAATTAA+AGG + chr1.3:70896826-70896845 None:intergenic 20.0%
!! ACAATAACTGAAAAATAAAG+GGG + chr1.3:70896871-70896890 None:intergenic 20.0%
!! CACAATAACTGAAAAATAAA+GGG + chr1.3:70896872-70896891 None:intergenic 20.0%
!! TCACAATAACTGAAAAATAA+AGG + chr1.3:70896873-70896892 None:intergenic 20.0%
!! TTGCAATTCAATATTATTGT+TGG - chr1.3:70895682-70895701 MS.gene006422:CDS 20.0%
! AGTTAAATCAAAACATGAGA+AGG - chr1.3:70896290-70896309 MS.gene006422:intron 25.0%
! AGTTTATTCAAACTTGTGAA+TGG + chr1.3:70895603-70895622 None:intergenic 25.0%
! ATTCACAAGTTTGAATAAAC+TGG - chr1.3:70895602-70895621 MS.gene006422:intron 25.0%
! ATTTCATCAATTGAGATTTG+AGG + chr1.3:70895284-70895303 None:intergenic 25.0%
! CAAATTTAACTAGGAAAGAA+GGG - chr1.3:70896542-70896561 MS.gene006422:intron 25.0%
! GATGAAATTAACTATGTTCT+TGG - chr1.3:70895296-70895315 MS.gene006422:intron 25.0%
! TCAAATTTAACTAGGAAAGA+AGG - chr1.3:70896541-70896560 MS.gene006422:intron 25.0%
! TCATCAAGTAGATTCTATAT+GGG - chr1.3:70896775-70896794 MS.gene006422:CDS 25.0%
! TTCATCAAGTAGATTCTATA+TGG - chr1.3:70896774-70896793 MS.gene006422:CDS 25.0%
!! GTTAGATGGTTTTTAAACTA+AGG - chr1.3:70896705-70896724 MS.gene006422:CDS 25.0%
!!! AATGGATTAAACAATCCTAA+TGG + chr1.3:70895585-70895604 None:intergenic 25.0%
!!! AATTGCAATTCTAAAGCATA+TGG + chr1.3:70895670-70895689 None:intergenic 25.0%
!!! ATGTGTTTTTTATGTCCATT+AGG - chr1.3:70895567-70895586 MS.gene006422:intron 25.0%
!!! TTCTGTCAAATTTTGTTGTA+CGG + chr1.3:70895946-70895965 None:intergenic 25.0%
AAATAAACCTGATACAGATC+TGG - chr1.3:70896947-70896966 MS.gene006422:CDS 30.0%
CAACTAGACAAAAGATAGTA+TGG + chr1.3:70895531-70895550 None:intergenic 30.0%
GAAAACGAAAATATGTCTTC+TGG - chr1.3:70896073-70896092 MS.gene006422:CDS 30.0%
GAATAAAGATTATCAAGCAG+TGG + chr1.3:70896452-70896471 None:intergenic 30.0%
GTACAACAAAATTTGACAGA+AGG - chr1.3:70895945-70895964 MS.gene006422:CDS 30.0%
GTTATCCATTAAAGCAACAT+GGG + chr1.3:70895396-70895415 None:intergenic 30.0%
TGGTCATATAAATATGCAGA+AGG + chr1.3:70895650-70895669 None:intergenic 30.0%
TGTTATCCATTAAAGCAACA+TGG + chr1.3:70895397-70895416 None:intergenic 30.0%
TTCAAATCATGAAAAGGAAG+AGG - chr1.3:70896360-70896379 MS.gene006422:intron 30.0%
! GTATATAGCTTGCACATATT+AGG - chr1.3:70895831-70895850 MS.gene006422:CDS 30.0%
! TATTTTCTGAGCTCAATTTG+AGG + chr1.3:70897047-70897066 None:intergenic 30.0%
! TCAGAATTTTGTACAGCTTT+AGG + chr1.3:70897017-70897036 None:intergenic 30.0%
!! CAAAATCAAACTTTGGTGTT+AGG + chr1.3:70896511-70896530 None:intergenic 30.0%
!! TCTAAAACTTGCACCTTTTT+GGG - chr1.3:70896615-70896634 MS.gene006422:intron 30.0%
!! TCTGTCAAATTTTGTTGTAC+GGG + chr1.3:70895945-70895964 None:intergenic 30.0%
!! TTCTGGTTCAAATCATGAAA+AGG - chr1.3:70896354-70896373 MS.gene006422:intron 30.0%
!!! TTCTAAAACTTGCACCTTTT+TGG - chr1.3:70896614-70896633 MS.gene006422:intron 30.0%
AGGCTACAAAAGATTTCAGT+CGG - chr1.3:70896215-70896234 MS.gene006422:CDS 35.0%
ATAGTTGTTCCTTTGCGAAT+TGG + chr1.3:70895900-70895919 None:intergenic 35.0%
ATATCCTGAGACAAAACTTC+AGG + chr1.3:70895185-70895204 None:intergenic 35.0%
GGCACAAGTCAAATTTAACT+AGG - chr1.3:70896533-70896552 MS.gene006422:intron 35.0%
TAACAATCCATTTCAGAGAG+TGG - chr1.3:70895412-70895431 MS.gene006422:intron 35.0%
TATGTTCTTGGATTACTCGA+CGG - chr1.3:70895308-70895327 MS.gene006422:intron 35.0%
TCAATTGAGATTTGAGGATC+AGG + chr1.3:70895278-70895297 None:intergenic 35.0%
TCGGGAAGATAATCAAACAT+GGG - chr1.3:70895361-70895380 MS.gene006422:intron 35.0%
TGATTTGAACCAGAAGAAGA+TGG + chr1.3:70896349-70896368 None:intergenic 35.0%
TGCAGAAAGATGAAAAGAAG+AGG + chr1.3:70896122-70896141 None:intergenic 35.0%
TTCGGGAAGATAATCAAACA+TGG - chr1.3:70895360-70895379 MS.gene006422:intron 35.0%
! AGTTGTGTTTTGCAAGGAAA+TGG - chr1.3:70896022-70896041 MS.gene006422:CDS 35.0%
! ATATTTGTTGCACCCTCAAT+TGG + chr1.3:70895341-70895360 None:intergenic 35.0%
! CTAAAACTTGCACCTTTTTG+GGG - chr1.3:70896616-70896635 MS.gene006422:intron 35.0%
! CTTCTTTTCATCTTTCTGCA+AGG - chr1.3:70896122-70896141 MS.gene006422:CDS 35.0%
! TAAAACTTGCACCTTTTTGG+GGG - chr1.3:70896617-70896636 MS.gene006422:intron 35.0%
! TCCACTTTCATTGTCCTTTT+CGG + chr1.3:70896247-70896266 None:intergenic 35.0%
! TTGAGGGTGCAACAAATATT+CGG - chr1.3:70895342-70895361 MS.gene006422:intron 35.0%
!! ACACCAAAGTTTGATTTTGC+AGG - chr1.3:70896512-70896531 MS.gene006422:intron 35.0%
AACTGTGTTTCCATTGGTGA+AGG + chr1.3:70896172-70896191 None:intergenic 40.0%
ACTACACTTTCCTCTTCCTT+TGG + chr1.3:70896414-70896433 None:intergenic 40.0%
ACTGTGTTTCCATTGGTGAA+GGG + chr1.3:70896171-70896190 None:intergenic 40.0%
ATTTCAGAGAGTGGATGATG+AGG - chr1.3:70895421-70895440 MS.gene006422:intron 40.0%
CAACAGATTCAACTCATGCA+TGG - chr1.3:70895234-70895253 MS.gene006422:intron 40.0%
CCTTGCAAAACACAACTTTG+TGG + chr1.3:70896019-70896038 None:intergenic 40.0%
CTACACTTTCCTCTTCCTTT+GGG + chr1.3:70896413-70896432 None:intergenic 40.0%
GTCGATATCCATGAATTGCT+TGG - chr1.3:70895110-70895129 MS.gene006422:CDS 40.0%
GTGCCTGCAAAATCAAACTT+TGG + chr1.3:70896518-70896537 None:intergenic 40.0%
TACACTTTCCTCTTCCTTTG+GGG + chr1.3:70896412-70896431 None:intergenic 40.0%
TATGTCAGATTATCCCCCAA+AGG - chr1.3:70896395-70896414 MS.gene006422:intron 40.0%
TCACCAATGGAAACACAGTT+GGG - chr1.3:70896172-70896191 MS.gene006422:CDS 40.0%
TTCACCAATGGAAACACAGT+TGG - chr1.3:70896171-70896190 MS.gene006422:CDS 40.0%
TTCATCTTTCTGCAAGGCAA+GGG - chr1.3:70896128-70896147 MS.gene006422:CDS 40.0%
TTTCATCTTTCTGCAAGGCA+AGG - chr1.3:70896127-70896146 MS.gene006422:CDS 40.0%
TTTCTCATCGAAGAGTAGAC+TGG + chr1.3:70895087-70895106 None:intergenic 40.0%
! CACTTTCATTGTCCTTTTCG+GGG + chr1.3:70896245-70896264 None:intergenic 40.0%
! CATGCATGAGTTGAATCTGT+TGG + chr1.3:70895236-70895255 None:intergenic 40.0%
! CCACAAAGTTGTGTTTTGCA+AGG - chr1.3:70896016-70896035 MS.gene006422:CDS 40.0%
! CCACTTTCATTGTCCTTTTC+GGG + chr1.3:70896246-70896265 None:intergenic 40.0%
! GGATCACTAGTGTGTTTTCT+AGG + chr1.3:70895998-70896017 None:intergenic 40.0%
! TCATCATCCACTCTCTGAAA+TGG + chr1.3:70895422-70895441 None:intergenic 40.0%
! TCGCAGTTTTTACATCTGCA+AGG + chr1.3:70896927-70896946 None:intergenic 40.0%
! TGAGGGTGCAACAAATATTC+GGG - chr1.3:70895343-70895362 MS.gene006422:intron 40.0%
!! ACAGCTTTAGGAACAAATGC+AGG + chr1.3:70897005-70897024 None:intergenic 40.0%
!! AGTGTGTTTTCTAGGAAGCA+CGG + chr1.3:70895990-70896009 None:intergenic 40.0%
!! GAAACCTGAAGTTTTGTCTC+AGG - chr1.3:70895178-70895197 MS.gene006422:CDS 40.0%
!! TCTTGCCCATGTTGCTTTAA+TGG - chr1.3:70895388-70895407 MS.gene006422:intron 40.0%
ACACTTTCCTCTTCCTTTGG+GGG + chr1.3:70896411-70896430 None:intergenic 45.0%
AGAGTAGACTGGTGATAAGG+AGG + chr1.3:70895076-70895095 None:intergenic 45.0%
AGATTATCCCCCAAAGGAAG+AGG - chr1.3:70896401-70896420 MS.gene006422:intron 45.0%
CACCAATGGAAACACAGTTG+GGG - chr1.3:70896173-70896192 MS.gene006422:CDS 45.0%
CCAGAAGAAGATGGATCCAT+CGG + chr1.3:70896340-70896359 None:intergenic 45.0%
CCCGAAAAGGACAATGAAAG+TGG - chr1.3:70896243-70896262 MS.gene006422:CDS 45.0%
CGAAGAGTAGACTGGTGATA+AGG + chr1.3:70895079-70895098 None:intergenic 45.0%
CTGAGATGACCAATTCGCAA+AGG - chr1.3:70895888-70895907 MS.gene006422:CDS 45.0%
GCCATCAGAGAATGAAGTTC+AGG - chr1.3:70896195-70896214 MS.gene006422:CDS 45.0%
GCCTGAACTTCATTCTCTGA+TGG + chr1.3:70896199-70896218 None:intergenic 45.0%
GTTCACAGCCAAGCAATTCA+TGG + chr1.3:70895121-70895140 None:intergenic 45.0%
TATTGTGAGTGCTATGCTGC+TGG - chr1.3:70896885-70896904 MS.gene006422:CDS 45.0%
TTGCTTGGCTGTGAACAAGA+CGG - chr1.3:70895125-70895144 MS.gene006422:CDS 45.0%
TTTGTGCATCACCCCCAAAA+AGG + chr1.3:70896631-70896650 None:intergenic 45.0%
! AGAAGGACAATGATAGCGCA+GGG - chr1.3:70896307-70896326 MS.gene006422:intron 45.0%
! ATATTAGGCGCTGTGTAGAG+AGG - chr1.3:70895846-70895865 MS.gene006422:CDS 45.0%
!! GCTTTAGGAACAAATGCAGG+TGG + chr1.3:70897002-70897021 None:intergenic 45.0%
!! GTGTGTTTTCTAGGAAGCAC+GGG + chr1.3:70895989-70896008 None:intergenic 45.0%
!! AAAAAAAAACAATATAAATA+TGG + chr1.3:70896684-70896703 None:intergenic 5.0%
AGGACTCAGTTGCAGGTGAA+AGG - chr1.3:70895156-70895175 MS.gene006422:CDS 50.0%
ATCACTGGTCCCTTCACCAA+TGG - chr1.3:70896159-70896178 MS.gene006422:CDS 50.0%
CCGATGGATCCATCTTCTTC+TGG - chr1.3:70896337-70896356 MS.gene006422:intron 50.0%
CGAGCTTCCAGATCTGTATC+AGG + chr1.3:70896957-70896976 None:intergenic 50.0%
GACGGCTCAGAACCAATTGA+GGG - chr1.3:70895326-70895345 MS.gene006422:intron 50.0%
TACAGATCTGGAAGCTCGCA+CGG - chr1.3:70896959-70896978 MS.gene006422:CDS 50.0%
TCAAGGAAGGACTCAGTTGC+AGG - chr1.3:70895149-70895168 MS.gene006422:CDS 50.0%
TGAACAAGACGGCTCAAGGA+AGG - chr1.3:70895136-70895155 MS.gene006422:CDS 50.0%
TTGGTGAAGGGACCAGTGAT+AGG + chr1.3:70896159-70896178 None:intergenic 50.0%
! GAAGGACAATGATAGCGCAG+GGG - chr1.3:70896308-70896327 MS.gene006422:intron 50.0%
! GAGAAGGACAATGATAGCGC+AGG - chr1.3:70896306-70896325 MS.gene006422:intron 50.0%
CGACGGCTCAGAACCAATTG+AGG - chr1.3:70895325-70895344 MS.gene006422:intron 55.0%
GCTGCTGGAGTCTACTGCAA+AGG - chr1.3:70896900-70896919 MS.gene006422:CDS 55.0%
GCTGTGAACAAGACGGCTCA+AGG - chr1.3:70895132-70895151 MS.gene006422:CDS 55.0%
GGCCCCAACTGTGTTTCCAT+TGG + chr1.3:70896178-70896197 None:intergenic 55.0%
! TCAGTCGGAGTACCCCGAAA+AGG - chr1.3:70896230-70896249 MS.gene006422:CDS 55.0%
!! GCAAGGGCATTGCCTATCAC+TGG - chr1.3:70896144-70896163 MS.gene006422:CDS 55.0%
AGCGCAGGGGAAACGTCCGA+TGG - chr1.3:70896321-70896340 MS.gene006422:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 70895038 70897067 70895038 ID=MS.gene006422
chr1.3 mRNA 70895038 70897067 70895038 ID=MS.gene006422.t1;Parent=MS.gene006422
chr1.3 exon 70896663 70897067 70896663 ID=MS.gene006422.t1.exon1;Parent=MS.gene006422.t1
chr1.3 CDS 70896663 70897067 70896663 ID=cds.MS.gene006422.t1;Parent=MS.gene006422.t1
chr1.3 exon 70895677 70896266 70895677 ID=MS.gene006422.t1.exon2;Parent=MS.gene006422.t1
chr1.3 CDS 70895677 70896266 70895677 ID=cds.MS.gene006422.t1;Parent=MS.gene006422.t1
chr1.3 exon 70895497 70895571 70895497 ID=MS.gene006422.t1.exon3;Parent=MS.gene006422.t1
chr1.3 CDS 70895497 70895571 70895497 ID=cds.MS.gene006422.t1;Parent=MS.gene006422.t1
chr1.3 exon 70895038 70895221 70895038 ID=MS.gene006422.t1.exon4;Parent=MS.gene006422.t1
chr1.3 CDS 70895038 70895221 70895038 ID=cds.MS.gene006422.t1;Parent=MS.gene006422.t1
Gene Sequence

>MS.gene006422

ATGCATGGCAATATGCAGGATGATTATTTGTTTCACCTCCTTATCACCAGTCTACTCTTCGATGAGAAACTTGTCGATATCCATGAATTGCTTGGCTGTGAACAAGACGGCTCAAGGAAGGACTCAGTTGCAGGTGAAAGGAAACCTGAAGTTTTGTCTCAGGATATAAATAATATTAATTCAAATGAAGAAGCTCCAACAGATTCAACTCATGCATGGATTGACACAAGTGAGCTACCTGATCCTCAAATCTCAATTGATGAAATTAACTATGTTCTTGGATTACTCGACGGCTCAGAACCAATTGAGGGTGCAACAAATATTCGGGAAGATAATCAAACATGGGACAATCTTGCCCATGTTGCTTTAATGGATAACAATCCATTTCAGAGAGTGGATGATGAGGTCAGAAAATCAAATCTATTTGAGTTACAGTCAATTTTGTGCATAACTTATCATGCATGTTTGTAAATTATTTATCAGTTATCATCCATACTATCTTTTGTCTAGTTGTGTCTTTATCTTCTTCATGTGTTTTTTATGTCCATTAGGATTGTTTAATCCATTCACAAGTTTGAATAAACTGGTGAAGTTATATTATATATTGATCCTTCTGCATATTTATATGACCATATGCTTTAGAATTGCAATTCAATATTATTGTTGGTACGTATTTGCTTCGTCAATATTGTCATATAGTCAATTTTTACTTTGAAAATACAGTCGATCTTTTCTTTCTAATTGTGTTGATGTGTTTTTACAAATCAATCATTGTAAACATACTTTTGTTTTTGTATATAGCTTGCACATATTAGGCGCTGTGTAGAGAGGAGCTGTCAAGACTATGCGTCTGAGATGACCAATTCGCAAAGGAACAACTATGCTTCTACTTCAAACATCAGTTCCCGTACAACAAAATTTGACAGAAGGAATGCTTTCAATGAAAAGCCCGTGCTTCCTAGAAAACACACTAGTGATCCACAAAGTTGTGTTTTGCAAGGAAATGGTTCTTGCTTAAATCATTACAATGACAAAGAAAACGAAAATATGTCTTCTGGAAGAAAAACTGAATCGCAGAGCTCCTCTTCTTTTCATCTTTCTGCAAGGCAAGGGCATTGCCTATCACTGGTCCCTTCACCAATGGAAACACAGTTGGGGCCATCAGAGAATGAAGTTCAGGCTACAAAAGATTTCAGTCGGAGTACCCCGAAAAGGACAATGAAAGTGGAGTTCAAGAACATAATGAATCAACAGTTAAATCAAAACATGAGAAGGACAATGATAGCGCAGGGGAAACGTCCGATGGATCCATCTTCTTCTGGTTCAAATCATGAAAAGGAAGAGGAAAGTGCAGATTTATGTCAGATTATCCCCCAAAGGAAGAGGAAAGTGTAGTTTTTTATTATCGATTCCACTGCTTGATAATCTTTATTCCATTATTATATGTTAGTTTTTAACTTTCTTCATTAACCTAACACCAAAGTTTGATTTTGCAGGCACAAGTCAAATTTAACTAGGAAAGAAGGGTCATGCAAAAGCTGTCGCTGTAAGAAATCGAAGTGTAAGCAACTGTAAGTTCTAAAACTTGCACCTTTTTGGGGGTGATGCACAAAGATAAAGCTACTATTATAAGTTGTGAATTACCATATTTATATTGTTTTTTTTTAGTTAGATGGTTTTTAAACTAAGGTTTATTTTGAAAAAAAAAATCAGCATACCGTAAATATAAAATTACTTTCATCAAGTAGATTCTATATGGGACACTAGTTGTAATCTTATCAATTTCCTTTAATTGTATGCAATTTGTTCTCTTTCTGTAAACTTTTTTTTCCCCTTTATTTTTCAGTTATTGTGAGTGCTATGCTGCTGGAGTCTACTGCAAAGGACCTTGCAGATGTAAAAACTGCGAAAATAAACCTGATACAGATCTGGAAGCTCGCACGGAGATTGAGTCTTGCAAACCACCTGCATTTGTTCCTAAAGCTGTACAAAATTCTGATTCGTCTCCTCAAATTGAGCTCAGAAAATAA
Protein sequence

>MS.gene006422.t1

MHGNMQDDYLFHLLITSLLFDEKLVDIHELLGCEQDGSRKDSVAGERKPEVLSQDINNINSNEEAPTDSTHAWIDTSELPDPQISIDEINYVLGLLDGSEPIEGATNIREDNQTWDNLAHVALMDNNPFQRVDDELAHIRRCVERSCQDYASEMTNSQRNNYASTSNISSRTTKFDRRNAFNEKPVLPRKHTSDPQSCVLQGNGSCLNHYNDKENENMSSGRKTESQSSSSFHLSARQGHCLSLVPSPMETQLGPSENEVQATKDFSRSTPKRTMKVEFKNIMNQQLNQNMRRTMIAQGKRPMDPSSSGSNHEKEEESADLCQIIPQRKRKVHKSNLTRKEGSCKSCRCKKSKCKQLYCECYAAGVYCKGPCRCKNCENKPDTDLEARTEIESCKPPAFVPKAVQNSDSSPQIELRK