Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006587.t1 | AFK43143.1 | 96.4 | 306 | 11 | 0 | 229 | 534 | 88 | 393 | 1.40E-153 | 553.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006587.t1 | Q5Z807 | 34.5 | 319 | 160 | 8 | 235 | 533 | 97 | 386 | 4.7e-33 | 144.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006587.t1 | G7JSU2 | 96.4 | 306 | 11 | 0 | 229 | 534 | 88 | 393 | 1.0e-153 | 553.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene006587.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006587.t1 | MTR_4g078160 | 96.721 | 305 | 10 | 0 | 230 | 534 | 89 | 393 | 0.0 | 607 |
MS.gene006587.t1 | MTR_4g078170 | 91.080 | 213 | 16 | 1 | 1 | 210 | 1 | 213 | 1.30e-139 | 402 |
MS.gene006587.t1 | MTR_5g007230 | 69.907 | 216 | 55 | 4 | 1 | 210 | 1 | 212 | 5.36e-98 | 296 |
MS.gene006587.t1 | MTR_5g030130 | 70.312 | 192 | 55 | 1 | 1 | 190 | 21 | 212 | 1.73e-96 | 293 |
MS.gene006587.t1 | MTR_8g066820 | 68.394 | 193 | 58 | 1 | 3 | 192 | 21 | 213 | 2.28e-91 | 280 |
MS.gene006587.t1 | MTR_5g030130 | 77.465 | 142 | 32 | 0 | 1 | 142 | 21 | 162 | 2.08e-82 | 254 |
MS.gene006587.t1 | MTR_7g102790 | 59.627 | 161 | 57 | 4 | 15 | 171 | 7 | 163 | 2.01e-61 | 201 |
MS.gene006587.t1 | MTR_1g062160 | 52.406 | 187 | 82 | 3 | 15 | 194 | 7 | 193 | 1.39e-59 | 196 |
MS.gene006587.t1 | MTR_2g060500 | 48.889 | 135 | 59 | 3 | 16 | 140 | 11 | 145 | 1.70e-40 | 144 |
MS.gene006587.t1 | MTR_2g060540 | 50.370 | 135 | 57 | 4 | 16 | 140 | 11 | 145 | 3.19e-40 | 143 |
MS.gene006587.t1 | MTR_4g116300 | 48.031 | 127 | 65 | 1 | 15 | 141 | 6 | 131 | 3.42e-35 | 132 |
MS.gene006587.t1 | MTR_2g084495 | 46.667 | 135 | 62 | 3 | 16 | 140 | 5 | 139 | 1.21e-33 | 127 |
MS.gene006587.t1 | MTR_2g084525 | 48.936 | 141 | 62 | 4 | 16 | 146 | 5 | 145 | 1.35e-33 | 128 |
MS.gene006587.t1 | MTR_2g055210 | 43.846 | 130 | 71 | 2 | 12 | 141 | 99 | 226 | 4.46e-33 | 129 |
MS.gene006587.t1 | MTR_4g094680 | 44.118 | 136 | 69 | 2 | 12 | 141 | 19 | 153 | 8.74e-33 | 125 |
MS.gene006587.t1 | MTR_2g084510 | 44.681 | 141 | 68 | 3 | 16 | 146 | 4 | 144 | 3.20e-32 | 124 |
MS.gene006587.t1 | MTR_2g036170 | 41.732 | 127 | 67 | 2 | 15 | 141 | 37 | 156 | 1.17e-27 | 112 |
MS.gene006587.t1 | MTR_8g105930 | 33.951 | 162 | 82 | 6 | 1 | 141 | 1 | 158 | 1.65e-16 | 79.7 |
MS.gene006587.t1 | MTR_8g097310 | 33.673 | 98 | 61 | 2 | 54 | 147 | 4 | 101 | 2.29e-14 | 71.2 |
MS.gene006587.t1 | MTR_5g077740 | 30.216 | 139 | 85 | 6 | 15 | 147 | 23 | 155 | 4.16e-14 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006587.t1 | AT4G17900 | 68.229 | 192 | 51 | 3 | 3 | 190 | 22 | 207 | 7.55e-88 | 270 |
MS.gene006587.t1 | AT4G17900 | 68.333 | 180 | 53 | 2 | 12 | 190 | 17 | 193 | 3.73e-83 | 258 |
MS.gene006587.t1 | AT1G32700 | 67.725 | 189 | 55 | 3 | 6 | 190 | 2 | 188 | 3.15e-80 | 250 |
MS.gene006587.t1 | AT1G21000 | 68.841 | 138 | 43 | 0 | 9 | 146 | 10 | 147 | 1.81e-67 | 218 |
MS.gene006587.t1 | AT1G21000 | 68.841 | 138 | 43 | 0 | 9 | 146 | 7 | 144 | 1.89e-67 | 218 |
MS.gene006587.t1 | AT1G76590 | 61.745 | 149 | 57 | 0 | 15 | 163 | 18 | 166 | 3.22e-64 | 209 |
MS.gene006587.t1 | AT5G46710 | 52.432 | 185 | 87 | 1 | 9 | 192 | 22 | 206 | 1.11e-60 | 200 |
MS.gene006587.t1 | AT5G46710 | 52.432 | 185 | 87 | 1 | 9 | 192 | 6 | 190 | 1.17e-60 | 199 |
MS.gene006587.t1 | AT1G32700 | 67.550 | 151 | 44 | 2 | 43 | 190 | 1 | 149 | 9.19e-60 | 196 |
MS.gene006587.t1 | AT1G43000 | 52.432 | 185 | 75 | 2 | 15 | 186 | 16 | 200 | 1.38e-59 | 197 |
MS.gene006587.t1 | AT1G43000 | 52.432 | 185 | 75 | 2 | 15 | 186 | 9 | 193 | 1.38e-59 | 196 |
MS.gene006587.t1 | AT5G46710 | 61.940 | 134 | 50 | 1 | 9 | 141 | 22 | 155 | 3.29e-57 | 188 |
MS.gene006587.t1 | AT1G75340 | 39.692 | 325 | 151 | 9 | 235 | 533 | 73 | 378 | 5.58e-57 | 195 |
MS.gene006587.t1 | AT1G75340 | 39.692 | 325 | 151 | 9 | 235 | 533 | 93 | 398 | 7.82e-57 | 195 |
MS.gene006587.t1 | AT1G75340 | 36.438 | 365 | 164 | 10 | 235 | 533 | 73 | 435 | 3.50e-49 | 176 |
MS.gene006587.t1 | AT2G27930 | 53.957 | 139 | 54 | 2 | 15 | 143 | 4 | 142 | 1.33e-44 | 156 |
MS.gene006587.t1 | AT2G27930 | 53.957 | 139 | 54 | 2 | 15 | 143 | 4 | 142 | 1.33e-44 | 156 |
MS.gene006587.t1 | AT2G27930 | 54.015 | 137 | 53 | 2 | 15 | 141 | 4 | 140 | 5.52e-44 | 154 |
MS.gene006587.t1 | AT2G27930 | 54.015 | 137 | 53 | 2 | 15 | 141 | 4 | 140 | 5.52e-44 | 154 |
MS.gene006587.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 8.93e-37 | 137 |
MS.gene006587.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 6 | 139 | 8.93e-37 | 137 |
MS.gene006587.t1 | AT2G12646 | 48.148 | 135 | 69 | 1 | 15 | 149 | 3 | 136 | 9.72e-37 | 137 |
MS.gene006587.t1 | AT3G60670 | 46.970 | 132 | 69 | 1 | 10 | 141 | 2 | 132 | 8.38e-35 | 131 |
MS.gene006587.t1 | AT1G31040 | 46.457 | 127 | 66 | 2 | 15 | 141 | 19 | 143 | 2.41e-33 | 127 |
MS.gene006587.t1 | AT2G27930 | 60.000 | 85 | 25 | 1 | 68 | 143 | 61 | 145 | 1.36e-26 | 107 |
MS.gene006587.t1 | AT2G27930 | 60.000 | 85 | 25 | 1 | 68 | 143 | 61 | 145 | 1.36e-26 | 107 |
MS.gene006587.t1 | AT2G01818 | 39.597 | 149 | 81 | 4 | 8 | 147 | 4 | 152 | 4.01e-23 | 98.2 |
MS.gene006587.t1 | AT2G01818 | 46.250 | 80 | 37 | 3 | 74 | 147 | 9 | 88 | 4.29e-12 | 64.7 |
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGTCGTGGAGTGCCGTTC+TGG | 0.175879 | 4.4:-32417660 | None:intergenic |
TTCTGAGATACAGAAATTTC+TGG | 0.238023 | 4.4:+32412228 | MS.gene006587:CDS |
TTTATTCTTCCTCAACTTCT+TGG | 0.252653 | 4.4:-32412906 | None:intergenic |
CTGTCGTGGAGTGCCGTTCT+GGG | 0.271318 | 4.4:-32417659 | None:intergenic |
TCCTTCAGCTTCTGCTCTCT+TGG | 0.285072 | 4.4:+32412379 | MS.gene006587:CDS |
TAGCTCCACTACAATGTTTC+AGG | 0.285865 | 4.4:+32421558 | MS.gene006587:CDS |
CAACGGGTGGTTGTTGGAAC+TGG | 0.317831 | 4.4:-32421522 | None:intergenic |
GGCATTTACATTGGCTCCAT+TGG | 0.328283 | 4.4:-32419938 | None:intergenic |
GGATGATAGTATCTGGTTAA+AGG | 0.329999 | 4.4:+32422302 | MS.gene006587:CDS |
CTTCTGCTCTCTTGGTTGTA+AGG | 0.335637 | 4.4:+32412387 | MS.gene006587:CDS |
CTATCTGGAGGAGCTTGTTC+TGG | 0.339340 | 4.4:-32422675 | None:intergenic |
TGGCTTTGGTGCCCTGTTGT+GGG | 0.340895 | 4.4:-32414232 | None:intergenic |
GGCATTTGCATTGGCTCCAT+TGG | 0.343025 | 4.4:-32419989 | None:intergenic |
TGGAGTGCCGTTCTGGGGCT+TGG | 0.345747 | 4.4:-32417653 | None:intergenic |
TGCACTGGAGTACTCATTAA+TGG | 0.355560 | 4.4:-32421272 | None:intergenic |
GTCTACCAAACAAATCTATC+TGG | 0.360641 | 4.4:-32422690 | None:intergenic |
AGTCTCAAGCTTTAGCCAAC+TGG | 0.360859 | 4.4:+32420047 | MS.gene006587:CDS |
AACAGGTTTCTTACAATTTG+TGG | 0.374910 | 4.4:-32419534 | None:intergenic |
CAAACAACATAGAACAATTC+AGG | 0.377021 | 4.4:+32411801 | MS.gene006587:CDS |
CCTACACCAGCGGGGTTGAC+AGG | 0.380081 | 4.4:+32421481 | MS.gene006587:CDS |
TGGAATTAGGGAGGTGGAGG+AGG | 0.387306 | 4.4:+32411613 | MS.gene006587:intron |
TTGGCTTTGGTGCCCTGTTG+TGG | 0.391248 | 4.4:-32414233 | None:intergenic |
CAGAAATACATAAAACATAA+TGG | 0.402136 | 4.4:+32414203 | MS.gene006587:intron |
GCGGGGTTGACAGGGTTTCC+AGG | 0.404696 | 4.4:+32421490 | MS.gene006587:CDS |
CTCAACCTAGGCCTGGAAAA+GGG | 0.405265 | 4.4:+32412314 | MS.gene006587:CDS |
TAATGGTAAAACCCCACAAC+AGG | 0.405412 | 4.4:+32414220 | MS.gene006587:CDS |
AAGAAACTTGTTTGAAGAAG+TGG | 0.413060 | 4.4:-32411676 | None:intergenic |
CTTTGCACTGTTTATAACAT+AGG | 0.413289 | 4.4:-32412269 | None:intergenic |
TTCATACCATGATGTGATAA+GGG | 0.415618 | 4.4:+32412204 | MS.gene006587:CDS |
CAACAGGGCACCAAAGCCAA+AGG | 0.415987 | 4.4:+32414236 | MS.gene006587:CDS |
CTAAAGCTTGAGACTGATAA+AGG | 0.416164 | 4.4:-32420039 | None:intergenic |
CTTCATACCATGATGTGATA+AGG | 0.416229 | 4.4:+32412203 | MS.gene006587:CDS |
CATGCTACGGTCACTGTAAA+GGG | 0.418201 | 4.4:+32418412 | MS.gene006587:CDS |
AGCAAGACAAACAGAACAAA+GGG | 0.420807 | 4.4:-32411773 | None:intergenic |
GTATCTGGTTAAAGGAGAAA+TGG | 0.421007 | 4.4:+32422310 | MS.gene006587:CDS |
ATATTAGCTATGAAGAATTA+CGG | 0.425378 | 4.4:+32419472 | MS.gene006587:CDS |
CCTCAACCTAGGCCTGGAAA+AGG | 0.425716 | 4.4:+32412313 | MS.gene006587:CDS |
GCTGAAAATCTTCTACAATC+TGG | 0.429867 | 4.4:-32418365 | None:intergenic |
GCTGTTGGAGGTGGTGTTGA+AGG | 0.439304 | 4.4:-32413019 | None:intergenic |
CCGAATAGATTTCCTGAGTT+GGG | 0.442288 | 4.4:-32421424 | None:intergenic |
CTCCTCCAGATAGATTTGTT+TGG | 0.444104 | 4.4:+32422685 | MS.gene006587:CDS |
ATCTGGTGCTTGCAAGCCTC+AGG | 0.444194 | 4.4:-32418348 | None:intergenic |
TGAACCCAACGGGTGGTTGT+TGG | 0.446347 | 4.4:-32421528 | None:intergenic |
ATTCTTCCTCAACTTCTTGG+AGG | 0.449130 | 4.4:-32412903 | None:intergenic |
CTATTCGGCAGTGGAATCTC+AGG | 0.451076 | 4.4:+32421439 | MS.gene006587:CDS |
CAACCAGCCACTCAAAATAA+TGG | 0.452627 | 4.4:+32420015 | MS.gene006587:CDS |
GTGACTTACAACTGAACATC+TGG | 0.457439 | 4.4:-32421586 | None:intergenic |
AACAGGGCACCAAAGCCAAA+GGG | 0.459405 | 4.4:+32414237 | MS.gene006587:CDS |
CATTGTTACCTTTCAAAGCC+AGG | 0.459429 | 4.4:-32420084 | None:intergenic |
CCCAACTCAGGAAATCTATT+CGG | 0.463482 | 4.4:+32421424 | MS.gene006587:CDS |
AGCCCCTTGAAAACAACAAA+TGG | 0.465513 | 4.4:+32417617 | MS.gene006587:CDS |
TATTAGCTATGAAGAATTAC+GGG | 0.470165 | 4.4:+32419473 | MS.gene006587:CDS |
TTGCATTGGCTCCATTGGAT+TGG | 0.473295 | 4.4:-32419984 | None:intergenic |
ATTACGGGCAGCAGCTTATG+AGG | 0.475626 | 4.4:+32419488 | MS.gene006587:CDS |
AGTTCCAACAACCACCCGTT+GGG | 0.480716 | 4.4:+32421524 | MS.gene006587:CDS |
AACCCCTTTCCTACACCAGC+GGG | 0.481599 | 4.4:+32421472 | MS.gene006587:CDS |
TTACATTGGCTCCATTGGAT+TGG | 0.483725 | 4.4:-32419933 | None:intergenic |
ACATGCTACGGTCACTGTAA+AGG | 0.484237 | 4.4:+32418411 | MS.gene006587:CDS |
AACCCCGCTGGTGTAGGAAA+GGG | 0.485644 | 4.4:-32421475 | None:intergenic |
CCTCCACCTCCAGTGGAACT+AGG | 0.487210 | 4.4:-32421296 | None:intergenic |
AGTGCTCCTTGTGACATTGT+TGG | 0.492049 | 4.4:+32419447 | MS.gene006587:intron |
CCACAGACACATTCTCCACT+TGG | 0.493241 | 4.4:-32422281 | None:intergenic |
GTCTCAAGCTTTAGCCAACT+GGG | 0.494261 | 4.4:+32420048 | MS.gene006587:CDS |
CAGCCTAGTTCCACTGGAGG+TGG | 0.494311 | 4.4:+32421293 | MS.gene006587:CDS |
CCAGTGGAACTAGGCTGCAC+TGG | 0.496298 | 4.4:-32421287 | None:intergenic |
GAAAGGCCTCAACCTAGGCC+TGG | 0.497293 | 4.4:+32412307 | MS.gene006587:CDS |
CCTAGTTCCACTGGAGGTGG+AGG | 0.504842 | 4.4:+32421296 | MS.gene006587:CDS |
TAACTCACTGCTGTTGGAGG+TGG | 0.507231 | 4.4:-32413028 | None:intergenic |
CCAGTGCAGCCTAGTTCCAC+TGG | 0.507921 | 4.4:+32421287 | MS.gene006587:CDS |
CACTGAACCCTGGCTTTGAA+AGG | 0.511359 | 4.4:+32420076 | MS.gene006587:CDS |
TTTGTTAAACTCAACCAACT+TGG | 0.511788 | 4.4:-32419854 | None:intergenic |
GCCGAATAGATTTCCTGAGT+TGG | 0.514471 | 4.4:-32421425 | None:intergenic |
CTTTGGATTCTTACATGCTA+CGG | 0.517734 | 4.4:+32418399 | MS.gene006587:CDS |
CTGTAACTCACTGCTGTTGG+AGG | 0.521807 | 4.4:-32413031 | None:intergenic |
TGGTTGAAAGGCATTTGCAT+TGG | 0.523106 | 4.4:-32419998 | None:intergenic |
GGCTTTGGTGCCCTGTTGTG+GGG | 0.524559 | 4.4:-32414231 | None:intergenic |
AAATGTTGAGTCAGAAAGAC+GGG | 0.526940 | 4.4:+32412927 | MS.gene006587:CDS |
TCAATGAATGGCATTAGTAA+TGG | 0.528017 | 4.4:+32412965 | MS.gene006587:CDS |
TTAAAGGAGAAATGGAATCC+TGG | 0.531099 | 4.4:+32422318 | MS.gene006587:CDS |
TGTCTGTGGATGATAGTATC+TGG | 0.532717 | 4.4:+32422295 | MS.gene006587:CDS |
GAAGGCTACGGTCACAGACT+TGG | 0.533320 | 4.4:-32412351 | None:intergenic |
AAACATATTACAATCCAAGT+TGG | 0.534996 | 4.4:+32419840 | MS.gene006587:CDS |
TAGAAGACTATTACCTCTCC+AGG | 0.535337 | 4.4:-32422336 | None:intergenic |
ATCAATGTTGATAGATAAGG+AGG | 0.535527 | 4.4:+32412179 | MS.gene006587:intron |
TGGAACTGGGAAGTAGAACC+TGG | 0.538756 | 4.4:-32421508 | None:intergenic |
TGAATGCAATATGTATTGCT+TGG | 0.542264 | 4.4:+32411735 | MS.gene006587:CDS |
TTCAGCAAGAGAAACCACTT+TGG | 0.543236 | 4.4:+32418382 | MS.gene006587:CDS |
CTAGTGTTATTGAACCCAAC+GGG | 0.544107 | 4.4:-32421538 | None:intergenic |
CAACCCCGCTGGTGTAGGAA+AGG | 0.545368 | 4.4:-32421476 | None:intergenic |
CAGAAACCCTTATCACATCA+TGG | 0.550564 | 4.4:-32412210 | None:intergenic |
GCTTATGAGGATAATAAGAA+AGG | 0.550923 | 4.4:+32419501 | MS.gene006587:CDS |
CCTGTCAACCCCGCTGGTGT+AGG | 0.552858 | 4.4:-32421481 | None:intergenic |
GGAAACCCTGTCAACCCCGC+TGG | 0.553188 | 4.4:-32421487 | None:intergenic |
GCTACGGTCACAGACTTGGC+AGG | 0.558501 | 4.4:-32412347 | None:intergenic |
CTACACCAGCGGGGTTGACA+GGG | 0.559612 | 4.4:+32421482 | MS.gene006587:CDS |
AACGGGTGGTTGTTGGAACT+GGG | 0.561218 | 4.4:-32421521 | None:intergenic |
GTTCAAAACTTCCAATCCAA+TGG | 0.564091 | 4.4:+32419922 | MS.gene006587:CDS |
AATGGCATTAGTAATGGAAG+TGG | 0.564357 | 4.4:+32412971 | MS.gene006587:CDS |
TGTCGTGGAGTGCCGTTCTG+GGG | 0.567364 | 4.4:-32417658 | None:intergenic |
ACTCAAAACTTCCAATCCAA+TGG | 0.568860 | 4.4:+32419973 | MS.gene006587:CDS |
TCAACCTAGGCCTGGAAAAG+GGG | 0.568882 | 4.4:+32412315 | MS.gene006587:CDS |
ATTGTTACCTTTCAAAGCCA+GGG | 0.569637 | 4.4:-32420083 | None:intergenic |
TGAATGAAAGGCCTCAACCT+AGG | 0.570401 | 4.4:+32412302 | MS.gene006587:CDS |
TTGGAACCTCCAAGAAGTTG+AGG | 0.571156 | 4.4:+32412897 | MS.gene006587:CDS |
AGTCAGAAAGACGGGTCTGA+TGG | 0.574132 | 4.4:+32412935 | MS.gene006587:CDS |
GTCACAGACTTGGCAGGTGT+TGG | 0.575139 | 4.4:-32412341 | None:intergenic |
CAGTTCCAACAACCACCCGT+TGG | 0.575425 | 4.4:+32421523 | MS.gene006587:CDS |
TGAAGAAGTGGTTGCAACCA+TGG | 0.585315 | 4.4:-32411664 | None:intergenic |
ACCCCGCTGGTGTAGGAAAG+GGG | 0.586779 | 4.4:-32421474 | None:intergenic |
AGAAGCTGAAGGAATCAAGA+AGG | 0.586801 | 4.4:-32412369 | None:intergenic |
CTGGGTGCTTCACTGAACCC+TGG | 0.589919 | 4.4:+32420066 | MS.gene006587:CDS |
TCAGGAAATCTATTCGGCAG+TGG | 0.590143 | 4.4:+32421430 | MS.gene006587:CDS |
GTACTCATTAATGGTGCAGA+GGG | 0.590273 | 4.4:-32421263 | None:intergenic |
GTTCTGTAACTCACTGCTGT+TGG | 0.597323 | 4.4:-32413034 | None:intergenic |
ATACATACCTCCACCTCCAG+TGG | 0.598583 | 4.4:-32421303 | None:intergenic |
AAGAAAACAAGTGGCCACCA+TGG | 0.602626 | 4.4:+32411647 | MS.gene006587:CDS |
TGAAGGAATCAAGAAGGCTA+CGG | 0.603890 | 4.4:-32412363 | None:intergenic |
CACAGACACATTCTCCACTT+GGG | 0.605135 | 4.4:-32422280 | None:intergenic |
AAGCAAGACAAACAGAACAA+AGG | 0.605554 | 4.4:-32411774 | None:intergenic |
TATTGCTTGGATTGTAACAA+TGG | 0.606739 | 4.4:+32411748 | MS.gene006587:CDS |
AGGTTGAAAGGCATTTACAT+TGG | 0.610948 | 4.4:-32419947 | None:intergenic |
AAAATGTTGAGTCAGAAAGA+CGG | 0.611575 | 4.4:+32412926 | MS.gene006587:CDS |
TTGAAGATGTACAGATCCTG+AGG | 0.613427 | 4.4:+32418332 | MS.gene006587:intron |
GTGCAGCCTAGTTCCACTGG+AGG | 0.621175 | 4.4:+32421290 | MS.gene006587:CDS |
GATGGTGAAGAGTCAATGAA+TGG | 0.621483 | 4.4:+32412953 | MS.gene006587:CDS |
TTGCAGAAATGCGTCCCAAG+TGG | 0.622726 | 4.4:+32422266 | MS.gene006587:intron |
GAAATTTCTGGACATAGCAG+AGG | 0.630359 | 4.4:+32412240 | MS.gene006587:CDS |
ACCAAGAGAGCAGAAGCTGA+AGG | 0.631097 | 4.4:-32412380 | None:intergenic |
TTGAAAACAACAAATGGAGT+CGG | 0.631566 | 4.4:+32417623 | MS.gene006587:CDS |
GCTAGTGTTATTGAACCCAA+CGG | 0.631795 | 4.4:-32421539 | None:intergenic |
TCTTCATCCAAGCCCCAGAA+CGG | 0.633134 | 4.4:+32417646 | MS.gene006587:CDS |
TACCAAACAAATCTATCTGG+AGG | 0.634565 | 4.4:-32422687 | None:intergenic |
CACTCTTGTGTGAATCTGAG+TGG | 0.634730 | 4.4:-32411714 | None:intergenic |
TGCTGCCTGAAACATTGTAG+TGG | 0.637731 | 4.4:-32421563 | None:intergenic |
GGTTCAGTGAAGCACCCAGT+TGG | 0.640946 | 4.4:-32420062 | None:intergenic |
GTGTTATTGAACCCAACGGG+TGG | 0.644954 | 4.4:-32421535 | None:intergenic |
ACAATGAAGAAGAAAACAAG+TGG | 0.648499 | 4.4:+32411638 | MS.gene006587:CDS |
TTCGGCAGTGGAATCTCAGG+TGG | 0.654074 | 4.4:+32421442 | MS.gene006587:CDS |
GATTTGTTATCAGACTGTCG+TGG | 0.655760 | 4.4:-32417673 | None:intergenic |
AGTACTCATTAATGGTGCAG+AGG | 0.660040 | 4.4:-32421264 | None:intergenic |
GGAGAAATGGAATCCTGGAG+AGG | 0.663151 | 4.4:+32422323 | MS.gene006587:CDS |
CAACCCCTTTCCTACACCAG+CGG | 0.664582 | 4.4:+32421471 | MS.gene006587:CDS |
ATATCTCCAACAATGTCACA+AGG | 0.680130 | 4.4:-32419453 | None:intergenic |
CCAAGTGGAGAATGTGTCTG+TGG | 0.682566 | 4.4:+32422281 | MS.gene006587:CDS |
AATGGTAAAACCCCACAACA+GGG | 0.685348 | 4.4:+32414221 | MS.gene006587:CDS |
TAGCATGTAAGAATCCAAAG+TGG | 0.705426 | 4.4:-32418396 | None:intergenic |
ACCCCTTTCCTACACCAGCG+GGG | 0.708861 | 4.4:+32421473 | MS.gene006587:CDS |
ACGTTGAGAGAAGACGTCAG+AGG | 0.742655 | 4.4:-32419901 | None:intergenic |
AGAAGTGGTTGCAACCATGG+TGG | 0.773987 | 4.4:-32411661 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 32411516 | 32422710 | 32411516 | ID=MS.gene006587 |
chr4.4 | mRNA | 32411516 | 32422710 | 32411516 | ID=MS.gene006587.t1;Parent=MS.gene006587 |
chr4.4 | exon | 32411516 | 32411518 | 32411516 | ID=MS.gene006587.t1.exon1;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32411516 | 32411518 | 32411516 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32411622 | 32411822 | 32411622 | ID=MS.gene006587.t1.exon2;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32411622 | 32411822 | 32411622 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32412193 | 32412408 | 32412193 | ID=MS.gene006587.t1.exon3;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32412193 | 32412408 | 32412193 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32412893 | 32413042 | 32412893 | ID=MS.gene006587.t1.exon4;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32412893 | 32413042 | 32412893 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32414206 | 32414297 | 32414206 | ID=MS.gene006587.t1.exon5;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32414206 | 32414297 | 32414206 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32417591 | 32417713 | 32417591 | ID=MS.gene006587.t1.exon6;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32417591 | 32417713 | 32417591 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32418338 | 32418433 | 32418338 | ID=MS.gene006587.t1.exon7;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32418338 | 32418433 | 32418338 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32419449 | 32419542 | 32419449 | ID=MS.gene006587.t1.exon8;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32419449 | 32419542 | 32419449 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32419826 | 32420097 | 32419826 | ID=MS.gene006587.t1.exon9;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32419826 | 32420097 | 32419826 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32421262 | 32421317 | 32421262 | ID=MS.gene006587.t1.exon10;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32421262 | 32421317 | 32421262 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32421410 | 32421599 | 32421410 | ID=MS.gene006587.t1.exon11;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32421410 | 32421599 | 32421410 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32422272 | 32422344 | 32422272 | ID=MS.gene006587.t1.exon12;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32422272 | 32422344 | 32422272 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
chr4.4 | exon | 32422672 | 32422710 | 32422672 | ID=MS.gene006587.t1.exon13;Parent=MS.gene006587.t1 |
chr4.4 | CDS | 32422672 | 32422710 | 32422672 | ID=cds.MS.gene006587.t1;Parent=MS.gene006587.t1 |
Gene Sequence |
Protein sequence |