AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006619

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006619.t1 MTR_4g078660 90.852 317 5 2 1 293 1 317 0.0 581
MS.gene006619.t1 MTR_2g090605 48.185 303 89 10 1 242 1 296 4.80e-78 243
MS.gene006619.t1 MTR_8g102100 51.813 193 84 4 54 241 75 263 1.30e-62 202
MS.gene006619.t1 MTR_6g090380 70.248 121 34 1 43 163 88 206 3.46e-62 201
MS.gene006619.t1 MTR_3g103960 55.280 161 51 3 56 215 49 189 8.01e-57 184
MS.gene006619.t1 MTR_7g092070 63.333 120 44 0 56 175 260 379 7.85e-54 186
MS.gene006619.t1 MTR_3g029590 49.708 171 76 4 56 221 260 425 1.10e-51 181
MS.gene006619.t1 MTR_3g435680 36.154 260 132 4 56 292 147 395 1.19e-48 166
MS.gene006619.t1 MTR_5g082830 50.000 166 77 1 56 221 213 372 3.54e-48 170
MS.gene006619.t1 MTR_1g050438 57.500 120 49 1 56 175 224 341 3.12e-47 167
MS.gene006619.t1 MTR_5g071070 55.000 120 54 0 56 175 144 263 3.45e-47 167
MS.gene006619.t1 MTR_0728s0020 57.500 120 49 1 56 175 240 357 5.48e-47 166
MS.gene006619.t1 MTR_5g071070 55.000 120 54 0 56 175 226 345 8.54e-47 167
MS.gene006619.t1 MTR_1g075890 54.167 120 55 0 56 175 225 344 3.46e-45 162
MS.gene006619.t1 MTR_3g070880 42.197 173 94 2 8 174 105 277 1.33e-43 155
MS.gene006619.t1 MTR_3g435590 39.336 211 113 5 22 231 206 402 2.65e-43 154
MS.gene006619.t1 MTR_3g464270 40.719 167 87 3 53 216 2 159 8.96e-36 132
MS.gene006619.t1 MTR_3g464260 49.474 95 48 0 91 185 212 306 1.30e-28 115
MS.gene006619.t1 MTR_3g464290 51.163 86 41 1 56 140 96 181 1.50e-26 108
MS.gene006619.t1 MTR_3g464280 38.532 109 33 1 56 164 184 258 9.34e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006619.t1 AT1G03790 57.082 233 57 8 53 253 75 296 2.14e-78 243
MS.gene006619.t1 AT5G44260 57.789 199 48 5 29 199 17 207 1.25e-68 218
MS.gene006619.t1 AT4G29190 62.963 135 47 1 33 164 49 183 1.06e-61 199
MS.gene006619.t1 AT2G25900 74.775 111 28 0 54 164 84 194 2.21e-61 197
MS.gene006619.t1 AT2G25900 74.775 111 28 0 54 164 84 194 2.21e-61 197
MS.gene006619.t1 AT2G19810 72.973 111 30 0 54 164 72 182 2.42e-61 198
MS.gene006619.t1 AT2G41900 60.833 120 47 0 56 175 257 376 3.38e-52 182
MS.gene006619.t1 AT5G07500 64.865 111 39 0 52 162 44 154 2.47e-50 167
MS.gene006619.t1 AT5G58620 59.167 120 49 0 56 175 205 324 3.42e-50 175
MS.gene006619.t1 AT5G12850 47.024 168 83 2 56 222 253 415 2.20e-49 174
MS.gene006619.t1 AT2G40140 42.077 183 97 2 34 216 190 363 2.35e-45 162
MS.gene006619.t1 AT2G40140 42.077 183 97 2 34 216 190 363 2.35e-45 162
MS.gene006619.t1 AT3G55980 40.314 191 86 4 36 220 189 357 4.38e-45 160
MS.gene006619.t1 AT3G55980 40.314 191 86 4 36 220 256 424 1.27e-44 160

Find 71 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTTGAATTATAATATT+TGG 0.138763 4.4:+31996030 None:intergenic
AATGATGTCACACCAGATTT+TGG 0.197364 4.4:-31995959 MS.gene006619:CDS
GAGAGATGAACAAAGGATTA+AGG 0.262097 4.4:-31995990 MS.gene006619:CDS
TAATGAGCTTATTCGTTCTA+TGG 0.266931 4.4:-31996110 MS.gene006619:CDS
CACATCTTTAAAATTTGAAT+TGG 0.299963 4.4:+31996141 None:intergenic
GTCAGTGACGGCGGTGGAGG+TGG 0.303772 4.4:+31996672 None:intergenic
CGGAAATGGTCCGAGGAATA+AGG 0.321371 4.4:+31996631 None:intergenic
TCCAGTCGTGGCTCCGGCTA+CGG 0.353618 4.4:+31996578 None:intergenic
CGGTGGAGGTGGGTGAGCGG+CGG 0.371274 4.4:+31996683 None:intergenic
CAGTTTCCACGGCGGTAATC+AGG 0.380359 4.4:+31996475 None:intergenic
GGGTGTAGGAGAAGGAGAAA+GGG 0.382653 4.4:+31996291 None:intergenic
GGTGTAGGAGAAGGAGAAAG+GGG 0.386886 4.4:+31996292 None:intergenic
GGGGTGTAGGAGAAGGAGAA+AGG 0.391140 4.4:+31996290 None:intergenic
TGAACTCGTACATTCGGAAA+TGG 0.412475 4.4:+31996617 None:intergenic
CCAGTCGTGGCTCCGGCTAC+GGG 0.415412 4.4:+31996579 None:intergenic
TAATATTTGGAAGCAGAAAC+AGG 0.417260 4.4:+31996043 None:intergenic
TCATTCACCCACCCAAAATC+TGG 0.421911 4.4:+31995947 None:intergenic
AGTGCTGGTTGCACCCTTCA+AGG 0.423216 4.4:-31996411 MS.gene006619:CDS
CCCACTTCTACTTTGTTAAG+TGG 0.437563 4.4:-31996208 MS.gene006619:CDS
CGCCGTGGAAACTGCGACCG+CGG 0.439207 4.4:-31996466 MS.gene006619:CDS
GCTTCAGTTCTATACCTTGA+AGG 0.441697 4.4:+31996397 None:intergenic
GGTGGAGGTGGGTGAGCGGC+GGG 0.446091 4.4:+31996684 None:intergenic
GACTGCCCTTTCGCCCATCC+AGG 0.447522 4.4:-31996553 MS.gene006619:CDS
TCCGGCTACGGGTGCATCGC+CGG 0.451200 4.4:+31996590 None:intergenic
CCCGTAGCCGGAGCCACGAC+TGG 0.463023 4.4:-31996579 MS.gene006619:CDS
CGATGAGGATCCTTATTCCT+CGG 0.469526 4.4:-31996641 MS.gene006619:CDS
CGGCGGGTGAGTAGCTTCCT+AGG 0.471531 4.4:+31996700 None:intergenic
CATGTCAGTGACGGCGGTGG+AGG 0.473061 4.4:+31996669 None:intergenic
TTTCGCCCATCCAGGCGAAA+AGG 0.492467 4.4:-31996545 MS.gene006619:CDS
CCACTTCTACTTTGTTAAGT+GGG 0.493579 4.4:-31996207 MS.gene006619:CDS
AGTCAGTCCAGTCGTGGCTC+CGG 0.493879 4.4:+31996572 None:intergenic
AGAACTGAAGCTTGTAAAGA+TGG 0.494694 4.4:-31996385 MS.gene006619:CDS
CACCGCGGTCGCAGTTTCCA+CGG 0.495031 4.4:+31996464 None:intergenic
CACTCTAAGGGACACTATCA+TGG 0.497717 4.4:-31996734 MS.gene006619:CDS
TATAATTCAAGTGGTGGTAG+TGG 0.499612 4.4:-31996022 MS.gene006619:CDS
TCAGTGACGGCGGTGGAGGT+GGG 0.503377 4.4:+31996673 None:intergenic
TCCGGCGATGCACCCGTAGC+CGG 0.506464 4.4:-31996591 MS.gene006619:CDS
TCCAAATATTATAATTCAAG+TGG 0.525309 4.4:-31996031 MS.gene006619:CDS
CTTCAGTTCTATACCTTGAA+GGG 0.525702 4.4:+31996398 None:intergenic
TTTCGCCTGGATGGGCGAAA+GGG 0.529164 4.4:+31996548 None:intergenic
TTAAAATTTGAATTGGACAA+AGG 0.542814 4.4:+31996148 None:intergenic
CGGCGGTGGAGGTGGGTGAG+CGG 0.570782 4.4:+31996680 None:intergenic
GAATGTACGAGTTCAAAATC+CGG 0.577680 4.4:-31996609 MS.gene006619:CDS
CCCACTTAACAAAGTAGAAG+TGG 0.579402 4.4:+31996207 None:intergenic
AAACATGTCAGTGACGGCGG+TGG 0.580438 4.4:+31996666 None:intergenic
AAATATTATAATTCAAGTGG+TGG 0.586798 4.4:-31996028 MS.gene006619:CDS
GGGTGAGTAGCTTCCTAGGT+GGG 0.590238 4.4:+31996704 None:intergenic
CGGGTGAGTAGCTTCCTAGG+TGG 0.603813 4.4:+31996703 None:intergenic
ACCGGAGTACTGATACCTGA+GGG 0.606467 4.4:+31996507 None:intergenic
CCCCTCAGGTATCAGTACTC+CGG 0.607988 4.4:-31996508 MS.gene006619:CDS
AAGGGCAGTCAGTCCAGTCG+TGG 0.612908 4.4:+31996566 None:intergenic
TGGTGATGATATTGTTCATG+AGG 0.613976 4.4:-31996074 MS.gene006619:CDS
GAATTGGACAAAGGTGACAA+AGG 0.615578 4.4:+31996157 None:intergenic
ATCGGAAAACATGTCAGTGA+CGG 0.625042 4.4:+31996660 None:intergenic
GTAATCAGGACACACCTCAC+CGG 0.640259 4.4:+31996489 None:intergenic
GTAGGAGAAGGAGAAAGGGG+TGG 0.646237 4.4:+31996295 None:intergenic
CGAGGAATAAGGATCCTCAT+CGG 0.647314 4.4:+31996642 None:intergenic
GAAGCGTGTGAATTCTCCCA+CGG 0.655675 4.4:-31996442 MS.gene006619:CDS
CCACTTAACAAAGTAGAAGT+GGG 0.659131 4.4:+31996208 None:intergenic
AGCAAAACTCTAAGTTGACG+AGG 0.664102 4.4:+31996322 None:intergenic
GTGTGTCCTGATTACCGCCG+TGG 0.679034 4.4:-31996481 MS.gene006619:CDS
TCATGGACAACATCCCACCT+AGG 0.683628 4.4:-31996717 MS.gene006619:CDS
GGAAAACATGTCAGTGACGG+CGG 0.684057 4.4:+31996663 None:intergenic
CACCGGAGTACTGATACCTG+AGG 0.684435 4.4:+31996506 None:intergenic
GTACATTCGGAAATGGTCCG+AGG 0.686670 4.4:+31996624 None:intergenic
CAGGTATCAGTACTCCGGTG+AGG 0.694360 4.4:-31996503 MS.gene006619:CDS
CGGAGTACTGATACCTGAGG+GGG 0.701089 4.4:+31996509 None:intergenic
CCGGAGTACTGATACCTGAG+GGG 0.737115 4.4:+31996508 None:intergenic
CGCGGTCGCAGTTTCCACGG+CGG 0.739171 4.4:+31996467 None:intergenic
TTGGACAAAGGTGACAAAGG+TGG 0.748749 4.4:+31996160 None:intergenic
AGAATTCACACGCTTCACCG+CGG 0.764375 4.4:+31996449 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGTTGTTTTTTTGA+GGG + chr4.4:31996461-31996480 None:intergenic 15.0%
!! AAATATTATAATTCAAGTGG+TGG - chr4.4:31996699-31996718 MS.gene006619:CDS 20.0%
!! ACCACTTGAATTATAATATT+TGG + chr4.4:31996700-31996719 None:intergenic 20.0%
!! TCCAAATATTATAATTCAAG+TGG - chr4.4:31996696-31996715 MS.gene006619:CDS 20.0%
!! TGAATTTGAAGAAGAAAAAT+GGG + chr4.4:31996547-31996566 None:intergenic 20.0%
!! TTAAAATTTGAATTGGACAA+AGG + chr4.4:31996582-31996601 None:intergenic 20.0%
!!! CACATCTTTAAAATTTGAAT+TGG + chr4.4:31996589-31996608 None:intergenic 20.0%
!!! CATTTTTTGTTGTTTTTTTG+AGG + chr4.4:31996462-31996481 None:intergenic 20.0%
!!! TTTTTTGTTGTTTTTTTGAG+GGG + chr4.4:31996460-31996479 None:intergenic 20.0%
! GAATTTGAAGAAGAAAAATG+GGG + chr4.4:31996546-31996565 None:intergenic 25.0%
! GTGAATTTGAAGAAGAAAAA+TGG + chr4.4:31996548-31996567 None:intergenic 25.0%
!!! TTTTTGTTGTTTTTTTGAGG+GGG + chr4.4:31996459-31996478 None:intergenic 25.0%
TAATATTTGGAAGCAGAAAC+AGG + chr4.4:31996687-31996706 None:intergenic 30.0%
TAATGAGCTTATTCGTTCTA+TGG - chr4.4:31996617-31996636 MS.gene006619:CDS 30.0%
!! TGTTTTTGAGAGATGAACAA+AGG - chr4.4:31996730-31996749 MS.gene006619:CDS 30.0%
!!! TCTATGGAGAGTTTTAACTT+TGG - chr4.4:31996633-31996652 MS.gene006619:CDS 30.0%
AGAACTGAAGCTTGTAAAGA+TGG - chr4.4:31996342-31996361 MS.gene006619:CDS 35.0%
CCACTTAACAAAGTAGAAGT+GGG + chr4.4:31996522-31996541 None:intergenic 35.0%
CCACTTCTACTTTGTTAAGT+GGG - chr4.4:31996520-31996539 MS.gene006619:CDS 35.0%
CTTCAGTTCTATACCTTGAA+GGG + chr4.4:31996332-31996351 None:intergenic 35.0%
GAAAAAGTCTCTCACTCTAA+GGG - chr4.4:31995981-31996000 MS.gene006619:CDS 35.0%
GAATGTACGAGTTCAAAATC+CGG - chr4.4:31996118-31996137 MS.gene006619:CDS 35.0%
GAGAGATGAACAAAGGATTA+AGG - chr4.4:31996737-31996756 MS.gene006619:CDS 35.0%
TATAATTCAAGTGGTGGTAG+TGG - chr4.4:31996705-31996724 MS.gene006619:CDS 35.0%
TGAAAAAGTCTCTCACTCTA+AGG - chr4.4:31995980-31995999 MS.gene006619:CDS 35.0%
! AATGATGTCACACCAGATTT+TGG - chr4.4:31996768-31996787 MS.gene006619:CDS 35.0%
! ATGATGTCACACCAGATTTT+GGG - chr4.4:31996769-31996788 MS.gene006619:CDS 35.0%
! GGATTTTGAACTCGTACATT+CGG + chr4.4:31996119-31996138 None:intergenic 35.0%
! TGGTGATGATATTGTTCATG+AGG - chr4.4:31996653-31996672 MS.gene006619:CDS 35.0%
!! TTAGAGTGAGAGACTTTTTC+AGG + chr4.4:31995981-31996000 None:intergenic 35.0%
!!! TAGAGTGAGAGACTTTTTCA+GGG + chr4.4:31995980-31995999 None:intergenic 35.0%
ATCGGAAAACATGTCAGTGA+CGG + chr4.4:31996070-31996089 None:intergenic 40.0%
CCCACTTAACAAAGTAGAAG+TGG + chr4.4:31996523-31996542 None:intergenic 40.0%
CCCACTTCTACTTTGTTAAG+TGG - chr4.4:31996519-31996538 MS.gene006619:CDS 40.0%
GAATTGGACAAAGGTGACAA+AGG + chr4.4:31996573-31996592 None:intergenic 40.0%
GCTTCAGTTCTATACCTTGA+AGG + chr4.4:31996333-31996352 None:intergenic 40.0%
TGAACTCGTACATTCGGAAA+TGG + chr4.4:31996113-31996132 None:intergenic 40.0%
! AGCAAAACTCTAAGTTGACG+AGG + chr4.4:31996408-31996427 None:intergenic 40.0%
!!! TGAGAGACTTTTTCAGGGAA+AGG + chr4.4:31995975-31995994 None:intergenic 40.0%
!!! TTGTTTTTTTGAGGGGGTGT+AGG + chr4.4:31996453-31996472 None:intergenic 40.0%
CGAGGAATAAGGATCCTCAT+CGG + chr4.4:31996088-31996107 None:intergenic 45.0%
CGATGAGGATCCTTATTCCT+CGG - chr4.4:31996086-31996105 MS.gene006619:CDS 45.0%
TCATTCACCCACCCAAAATC+TGG + chr4.4:31996783-31996802 None:intergenic 45.0%
TTGGACAAAGGTGACAAAGG+TGG + chr4.4:31996570-31996589 None:intergenic 45.0%
! ATGTCACACCAGATTTTGGG+TGG - chr4.4:31996772-31996791 MS.gene006619:CDS 45.0%
! CACTCTAAGGGACACTATCA+TGG - chr4.4:31995993-31996012 MS.gene006619:CDS 45.0%
! CACTGACATGTTTTCCGATG+AGG - chr4.4:31996071-31996090 MS.gene006619:CDS 45.0%
!! TGTCACACCAGATTTTGGGT+GGG - chr4.4:31996773-31996792 MS.gene006619:CDS 45.0%
ACCAGCACTCAAAAACTCCG+TGG + chr4.4:31996305-31996324 None:intergenic 50.0%
AGAATTCACACGCTTCACCG+CGG + chr4.4:31996281-31996300 None:intergenic 50.0%
CCAGCACTCAAAAACTCCGT+GGG + chr4.4:31996304-31996323 None:intergenic 50.0%
CGGAAATGGTCCGAGGAATA+AGG + chr4.4:31996099-31996118 None:intergenic 50.0%
GAAGCGTGTGAATTCTCCCA+CGG - chr4.4:31996285-31996304 MS.gene006619:CDS 50.0%
GGAAAACATGTCAGTGACGG+CGG + chr4.4:31996067-31996086 None:intergenic 50.0%
GGGTGTAGGAGAAGGAGAAA+GGG + chr4.4:31996439-31996458 None:intergenic 50.0%
GGTGTAGGAGAAGGAGAAAG+GGG + chr4.4:31996438-31996457 None:intergenic 50.0%
GTAATCAGGACACACCTCAC+CGG + chr4.4:31996241-31996260 None:intergenic 50.0%
GTACATTCGGAAATGGTCCG+AGG + chr4.4:31996106-31996125 None:intergenic 50.0%
TCATGGACAACATCCCACCT+AGG - chr4.4:31996010-31996029 MS.gene006619:CDS 50.0%
!! ACCGGAGTACTGATACCTGA+GGG + chr4.4:31996223-31996242 None:intergenic 50.0%
!! TTTTGAGGGGGTGTAGGAGA+AGG + chr4.4:31996447-31996466 None:intergenic 50.0%
AAACATGTCAGTGACGGCGG+TGG + chr4.4:31996064-31996083 None:intergenic 55.0%
CAGGTATCAGTACTCCGGTG+AGG - chr4.4:31996224-31996243 MS.gene006619:CDS 55.0%
CAGTTTCCACGGCGGTAATC+AGG + chr4.4:31996255-31996274 None:intergenic 55.0%
CCCCTCAGGTATCAGTACTC+CGG - chr4.4:31996219-31996238 MS.gene006619:CDS 55.0%
GGGGTGTAGGAGAAGGAGAA+AGG + chr4.4:31996440-31996459 None:intergenic 55.0%
GGGTGAGTAGCTTCCTAGGT+GGG + chr4.4:31996026-31996045 None:intergenic 55.0%
GTAGGAGAAGGAGAAAGGGG+TGG + chr4.4:31996435-31996454 None:intergenic 55.0%
TTTCGCCCATCCAGGCGAAA+AGG - chr4.4:31996182-31996201 MS.gene006619:CDS 55.0%
TTTCGCCTGGATGGGCGAAA+GGG + chr4.4:31996182-31996201 None:intergenic 55.0%
! TTTTCGCCTGGATGGGCGAA+AGG + chr4.4:31996183-31996202 None:intergenic 55.0%
!! AGTGCTGGTTGCACCCTTCA+AGG - chr4.4:31996316-31996335 MS.gene006619:CDS 55.0%
!! CACCGGAGTACTGATACCTG+AGG + chr4.4:31996224-31996243 None:intergenic 55.0%
!! CCGGAGTACTGATACCTGAG+GGG + chr4.4:31996222-31996241 None:intergenic 55.0%
!! CGGAGTACTGATACCTGAGG+GGG + chr4.4:31996221-31996240 None:intergenic 55.0%
!!! CCCACGGAGTTTTTGAGTGC+TGG - chr4.4:31996301-31996320 MS.gene006619:CDS 55.0%
AAGGGCAGTCAGTCCAGTCG+TGG + chr4.4:31996164-31996183 None:intergenic 60.0%
AGTCAGTCCAGTCGTGGCTC+CGG + chr4.4:31996158-31996177 None:intergenic 60.0%
CGGGTGAGTAGCTTCCTAGG+TGG + chr4.4:31996027-31996046 None:intergenic 60.0%
GATACCTGAGGGGGTCACGA+CGG + chr4.4:31996212-31996231 None:intergenic 60.0%
GTGTGTCCTGATTACCGCCG+TGG - chr4.4:31996246-31996265 MS.gene006619:CDS 60.0%
! GCGAGCCTTTTCGCCTGGAT+GGG + chr4.4:31996190-31996209 None:intergenic 60.0%
CACCGCGGTCGCAGTTTCCA+CGG + chr4.4:31996266-31996285 None:intergenic 65.0%
CATGTCAGTGACGGCGGTGG+AGG + chr4.4:31996061-31996080 None:intergenic 65.0%
CGGCGGGTGAGTAGCTTCCT+AGG + chr4.4:31996030-31996049 None:intergenic 65.0%
GACTGCCCTTTCGCCCATCC+AGG - chr4.4:31996174-31996193 MS.gene006619:CDS 65.0%
TCAGTGACGGCGGTGGAGGT+GGG + chr4.4:31996057-31996076 None:intergenic 65.0%
TCCAGTCGTGGCTCCGGCTA+CGG + chr4.4:31996152-31996171 None:intergenic 65.0%
! GGCGAGCCTTTTCGCCTGGA+TGG + chr4.4:31996191-31996210 None:intergenic 65.0%
CCAGTCGTGGCTCCGGCTAC+GGG + chr4.4:31996151-31996170 None:intergenic 70.0%
CGCCGTGGAAACTGCGACCG+CGG - chr4.4:31996261-31996280 MS.gene006619:CDS 70.0%
CGCGGTCGCAGTTTCCACGG+CGG + chr4.4:31996263-31996282 None:intergenic 70.0%
GTCAGTGACGGCGGTGGAGG+TGG + chr4.4:31996058-31996077 None:intergenic 70.0%
TCCGGCGATGCACCCGTAGC+CGG - chr4.4:31996136-31996155 MS.gene006619:CDS 70.0%
TCCGGCTACGGGTGCATCGC+CGG + chr4.4:31996140-31996159 None:intergenic 70.0%
! CGACGGCGAGCCTTTTCGCC+TGG + chr4.4:31996195-31996214 None:intergenic 70.0%
CCCGTAGCCGGAGCCACGAC+TGG - chr4.4:31996148-31996167 MS.gene006619:CDS 75.0%
CGGCGGTGGAGGTGGGTGAG+CGG + chr4.4:31996050-31996069 None:intergenic 75.0%
CGGTGGAGGTGGGTGAGCGG+CGG + chr4.4:31996047-31996066 None:intergenic 75.0%
CTCGCCGTCGTGACCCCCTC+AGG - chr4.4:31996205-31996224 MS.gene006619:CDS 75.0%
GGTGGAGGTGGGTGAGCGGC+GGG + chr4.4:31996046-31996065 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31995934 31996815 31995934 ID=MS.gene006619
chr4.4 mRNA 31995934 31996815 31995934 ID=MS.gene006619.t1;Parent=MS.gene006619
chr4.4 exon 31995934 31996815 31995934 ID=MS.gene006619.t1.exon1;Parent=MS.gene006619.t1
chr4.4 CDS 31995934 31996815 31995934 ID=cds.MS.gene006619.t1;Parent=MS.gene006619.t1
Gene Sequence

>MS.gene006619

ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCCTGAAAAAGTCTCTCACTCTAAGGGACACTATCATGGACAACATCCCACCTAGGAAGCTACTCACCCGCCGCTCACCCACCTCCACCGCCGTCACTGACATGTTTTCCGATGAGGATCCTTATTCCTCGGACCATTTCCGAATGTACGAGTTCAAAATCCGGCGATGCACCCGTAGCCGGAGCCACGACTGGACTGACTGCCCTTTCGCCCATCCAGGCGAAAAGGCTCGCCGTCGTGACCCCCTCAGGTATCAGTACTCCGGTGAGGTGTGTCCTGATTACCGCCGTGGAAACTGCGACCGCGGTGAAGCGTGTGAATTCTCCCACGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGTAAAAATTGTAAGCGCAAAATTTGTTTTTTTGCTCATACACCTCGTCAACTTAGAGTTTTGCTTTTACCACCCCTTTCTCCTTCTCCTACACCCCCTCAAAAAAACAACAAAAAATGTTGTTCTTTCTGTCATTGCTGTTCAAATTCTTCTTCACCCACTTCTACTTTGTTAAGTGGGCCCCATTTTTCTTCTTCAAATTCACCACCTTTGTCACCTTTGTCCAATTCAAATTTTAAAGATGTGCATGTGCTTAATGAGCTTATTCGTTCTATGGAGAGTTTTAACTTTGGTGATGATATTGTTCATGAGGCTAATTCACCTGTTTCTGCTTCCAAATATTATAATTCAAGTGGTGGTAGTGGCATGTTTTTGAGAGATGAACAAAGGATTAAGGTTGTTGATAATGATGTCACACCAGATTTTGGGTGGGTGAATGAGCTGCTGATGTAG
Protein sequence

>MS.gene006619.t1

MSSVLCEEQQKLLLSLKKSLTLRDTIMDNIPPRKLLTRRSPTSTAVTDMFSDEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRYQYSGEVCPDYRRGNCDRGEACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPLSPSPTPPQKNNKKCCSFCHCCSNSSSPTSTLLSGPHFSSSNSPPLSPLSNSNFKDVHVLNELIRSMESFNFGDDIVHEANSPVSASKYYNSSGGSGMFLRDEQRIKVVDNDVTPDFGWVNELLM